####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 27 ( 215), selected 27 , name T0537TS165_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 27 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS165_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 351 - 367 4.91 11.54 LCS_AVERAGE: 51.25 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 365 - 371 1.69 20.29 LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.89 18.48 LCS_AVERAGE: 18.64 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 365 - 369 1.00 19.52 LCS_AVERAGE: 12.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 27 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 17 3 3 3 4 4 5 5 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT A 352 A 352 3 4 17 3 3 3 4 4 5 5 7 8 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT E 353 E 353 3 4 17 3 3 3 4 4 5 5 8 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT E 354 E 354 3 4 17 3 3 3 4 4 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT L 355 L 355 3 4 17 3 3 4 4 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT G 356 G 356 3 6 17 3 3 4 6 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT N 357 N 357 4 6 17 4 4 5 5 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT I 358 I 358 4 6 17 4 4 4 6 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT I 359 I 359 4 6 17 4 4 4 5 6 6 7 8 10 11 13 15 15 16 16 17 17 18 21 21 LCS_GDT V 360 V 360 4 6 17 4 4 4 5 6 6 7 8 10 12 13 15 15 16 16 17 17 18 21 21 LCS_GDT A 361 A 361 3 6 17 3 3 4 5 6 6 7 8 10 12 14 15 15 16 16 17 17 18 21 21 LCS_GDT W 362 W 362 4 6 17 3 4 5 6 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT N 363 N 363 4 5 17 3 4 5 6 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT P 364 P 364 4 5 17 3 4 5 6 6 6 7 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT N 365 N 365 5 7 17 3 4 5 6 6 7 8 9 12 13 14 15 15 16 16 17 17 18 21 21 LCS_GDT L 366 L 366 5 7 17 3 4 5 5 7 7 8 9 12 13 14 14 15 16 16 17 17 18 21 21 LCS_GDT W 367 W 367 5 7 17 3 4 5 5 7 7 8 9 11 12 12 12 12 15 15 17 17 18 21 21 LCS_GDT K 368 K 368 5 7 14 3 4 5 5 7 7 8 9 11 12 12 12 12 13 15 16 17 18 21 21 LCS_GDT K 369 K 369 5 7 14 3 4 5 5 7 7 8 9 11 12 12 12 12 13 15 16 16 18 21 21 LCS_GDT G 370 G 370 4 7 14 3 4 5 5 7 7 8 9 11 12 12 12 12 13 15 16 16 17 21 21 LCS_GDT T 371 T 371 4 7 14 3 4 5 5 7 7 8 9 11 12 12 12 12 13 15 16 16 18 21 21 LCS_GDT N 372 N 372 4 7 14 3 4 4 5 7 7 8 9 11 12 12 12 12 13 13 15 16 16 17 20 LCS_GDT G 373 G 373 4 6 14 3 4 4 5 6 6 7 8 11 12 12 12 12 13 13 14 14 14 15 15 LCS_GDT Y 374 Y 374 4 6 14 3 4 4 5 6 6 7 8 11 12 12 12 12 13 13 14 14 14 15 15 LCS_GDT P 375 P 375 3 6 14 3 3 4 5 6 6 7 8 11 12 12 12 12 13 13 14 14 14 15 15 LCS_GDT I 376 I 376 3 5 14 3 3 4 4 5 5 7 8 11 12 12 12 12 13 13 14 14 14 15 17 LCS_GDT F 377 F 377 3 5 14 3 3 3 4 5 5 5 6 8 9 10 10 10 13 13 13 14 14 14 15 LCS_AVERAGE LCS_A: 27.40 ( 12.31 18.64 51.25 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 7 7 8 9 12 13 14 15 15 16 16 17 17 18 21 21 GDT PERCENT_AT 12.90 12.90 16.13 19.35 22.58 22.58 25.81 29.03 38.71 41.94 45.16 48.39 48.39 51.61 51.61 54.84 54.84 58.06 67.74 67.74 GDT RMS_LOCAL 0.14 0.14 0.95 1.32 1.89 1.69 2.16 2.73 3.64 3.74 3.93 4.33 4.33 4.51 4.51 4.91 4.91 5.39 6.68 6.68 GDT RMS_ALL_AT 23.64 23.64 14.16 14.16 18.48 20.29 20.69 16.10 11.45 11.55 11.59 12.70 12.70 11.86 11.86 11.54 11.54 11.21 10.37 10.37 # Checking swapping # possible swapping detected: E 354 E 354 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 30.731 0 0.515 0.692 31.659 0.000 0.000 LGA A 352 A 352 30.411 0 0.355 0.365 31.821 0.000 0.000 LGA E 353 E 353 27.591 0 0.610 0.569 29.014 0.000 0.000 LGA E 354 E 354 26.335 0 0.626 1.136 30.936 0.000 0.000 LGA L 355 L 355 25.751 0 0.636 0.818 27.156 0.000 0.000 LGA G 356 G 356 22.940 0 0.614 0.614 24.314 0.000 0.000 LGA N 357 N 357 17.954 0 0.415 1.124 19.550 0.000 0.000 LGA I 358 I 358 20.288 0 0.036 1.082 26.475 0.000 0.000 LGA I 359 I 359 21.995 0 0.450 1.080 29.361 0.000 0.000 LGA V 360 V 360 17.300 0 0.124 0.274 18.629 0.000 0.000 LGA A 361 A 361 14.034 0 0.350 0.348 15.365 0.000 0.000 LGA W 362 W 362 11.009 0 0.630 1.025 16.362 0.238 0.068 LGA N 363 N 363 6.566 0 0.264 0.985 8.154 13.214 22.500 LGA P 364 P 364 4.360 0 0.684 0.658 6.713 40.714 32.109 LGA N 365 N 365 3.020 0 0.691 1.383 7.613 59.405 36.429 LGA L 366 L 366 1.474 0 0.137 1.055 3.681 85.952 70.000 LGA W 367 W 367 0.593 0 0.030 1.072 5.349 86.190 70.068 LGA K 368 K 368 3.127 0 0.040 1.581 4.688 65.238 50.370 LGA K 369 K 369 2.525 0 0.091 0.676 4.467 55.476 48.836 LGA G 370 G 370 1.178 0 0.088 0.088 1.776 81.548 81.548 LGA T 371 T 371 2.444 0 0.600 1.342 5.914 70.952 55.986 LGA N 372 N 372 3.561 0 0.686 0.679 6.868 45.238 32.917 LGA G 373 G 373 8.585 0 0.113 0.113 10.786 4.167 4.167 LGA Y 374 Y 374 10.185 0 0.289 0.429 13.689 2.500 0.833 LGA P 375 P 375 10.005 0 0.032 0.160 13.090 0.119 0.068 LGA I 376 I 376 9.012 0 0.249 1.140 10.393 1.548 8.512 LGA F 377 F 377 13.351 0 0.044 1.051 20.231 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 27 108 108 100.00 215 215 100.00 31 SUMMARY(RMSD_GDC): 9.458 9.472 10.289 19.758 16.594 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 27 31 4.0 9 2.73 29.032 27.764 0.319 LGA_LOCAL RMSD: 2.725 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.096 Number of assigned atoms: 27 Std_ASGN_ATOMS RMSD: 9.458 Standard rmsd on all 27 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.722055 * X + -0.557111 * Y + 0.410201 * Z + 15.554234 Y_new = 0.665108 * X + 0.722194 * Y + -0.189914 * Z + -24.639549 Z_new = -0.190441 * X + 0.409956 * Y + 0.892002 * Z + 33.937347 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.744369 0.191612 0.430801 [DEG: 42.6492 10.9785 24.6831 ] ZXZ: 1.137203 0.469041 -0.434880 [DEG: 65.1569 26.8741 -24.9168 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS165_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS165_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 27 31 4.0 9 2.73 27.764 9.46 REMARK ---------------------------------------------------------- MOLECULE T0537TS165_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1pe9_A ATOM 2529 N SER 351 11.183 4.706 78.139 1.00214.44 N ATOM 2530 CA SER 351 10.700 4.250 79.413 1.00214.44 C ATOM 2531 CB SER 351 11.507 3.066 79.978 1.00214.44 C ATOM 2532 OG SER 351 10.970 2.658 81.231 1.00214.44 O ATOM 2533 C SER 351 10.762 5.390 80.390 1.00214.44 C ATOM 2534 O SER 351 11.133 5.210 81.547 1.00214.44 O ATOM 2535 N ALA 352 10.374 6.596 79.938 1.00228.74 N ATOM 2536 CA ALA 352 10.325 7.760 80.785 1.00228.74 C ATOM 2537 CB ALA 352 9.350 7.599 81.964 1.00228.74 C ATOM 2538 C ALA 352 11.680 8.073 81.335 1.00228.74 C ATOM 2539 O ALA 352 11.793 8.607 82.437 1.00228.74 O ATOM 2540 N GLU 353 12.750 7.760 80.581 1.00 94.44 N ATOM 2541 CA GLU 353 14.067 8.099 81.037 1.00 94.44 C ATOM 2542 CB GLU 353 14.868 6.902 81.569 1.00 94.44 C ATOM 2543 CG GLU 353 16.226 7.304 82.145 1.00 94.44 C ATOM 2544 CD GLU 353 16.904 6.048 82.667 1.00 94.44 C ATOM 2545 OE1 GLU 353 16.287 4.954 82.561 1.00 94.44 O ATOM 2546 OE2 GLU 353 18.048 6.165 83.182 1.00 94.44 O ATOM 2547 C GLU 353 14.801 8.647 79.857 1.00 94.44 C ATOM 2548 O GLU 353 14.425 8.390 78.715 1.00 94.44 O ATOM 2549 N GLU 354 15.863 9.438 80.100 1.00 60.25 N ATOM 2550 CA GLU 354 16.593 9.992 78.999 1.00 60.25 C ATOM 2551 CB GLU 354 17.665 11.020 79.404 1.00 60.25 C ATOM 2552 CG GLU 354 18.350 11.678 78.203 1.00 60.25 C ATOM 2553 CD GLU 354 19.382 12.668 78.723 1.00 60.25 C ATOM 2554 OE1 GLU 354 19.491 12.819 79.969 1.00 60.25 O ATOM 2555 OE2 GLU 354 20.073 13.295 77.875 1.00 60.25 O ATOM 2556 C GLU 354 17.268 8.868 78.296 1.00 60.25 C ATOM 2557 O GLU 354 17.729 7.908 78.921 1.00 60.25 O ATOM 2558 N LEU 355 17.326 8.956 76.959 1.00108.96 N ATOM 2559 CA LEU 355 17.895 7.907 76.169 1.00108.96 C ATOM 2560 CB LEU 355 16.863 7.393 75.136 1.00108.96 C ATOM 2561 CG LEU 355 17.288 6.260 74.185 1.00108.96 C ATOM 2562 CD1 LEU 355 16.085 5.740 73.380 1.00108.96 C ATOM 2563 CD2 LEU 355 18.409 6.699 73.236 1.00108.96 C ATOM 2564 C LEU 355 19.087 8.478 75.478 1.00108.96 C ATOM 2565 O LEU 355 19.127 9.669 75.165 1.00108.96 O ATOM 2566 N GLY 356 20.123 7.651 75.262 1.00108.13 N ATOM 2567 CA GLY 356 21.238 8.143 74.515 1.00108.13 C ATOM 2568 C GLY 356 21.532 7.113 73.480 1.00108.13 C ATOM 2569 O GLY 356 21.954 6.004 73.803 1.00108.13 O ATOM 2570 N ASN 357 21.308 7.449 72.195 1.00119.75 N ATOM 2571 CA ASN 357 21.623 6.484 71.187 1.00119.75 C ATOM 2572 CB ASN 357 20.582 6.426 70.055 1.00119.75 C ATOM 2573 CG ASN 357 19.327 5.758 70.594 1.00119.75 C ATOM 2574 OD1 ASN 357 18.234 6.317 70.522 1.00119.75 O ATOM 2575 ND2 ASN 357 19.484 4.521 71.136 1.00119.75 N ATOM 2576 C ASN 357 22.913 6.921 70.581 1.00119.75 C ATOM 2577 O ASN 357 23.100 6.852 69.367 1.00119.75 O ATOM 2578 N ILE 358 23.857 7.352 71.435 1.00103.52 N ATOM 2579 CA ILE 358 25.113 7.835 70.950 1.00103.52 C ATOM 2580 CB ILE 358 25.969 8.434 72.033 1.00103.52 C ATOM 2581 CG2 ILE 358 26.229 7.368 73.111 1.00103.52 C ATOM 2582 CG1 ILE 358 27.245 9.048 71.432 1.00103.52 C ATOM 2583 CD1 ILE 358 28.011 9.939 72.410 1.00103.52 C ATOM 2584 C ILE 358 25.869 6.715 70.320 1.00103.52 C ATOM 2585 O ILE 358 26.420 6.873 69.232 1.00103.52 O ATOM 2586 N ILE 359 25.910 5.541 70.978 1.00171.21 N ATOM 2587 CA ILE 359 26.706 4.493 70.416 1.00171.21 C ATOM 2588 CB ILE 359 27.473 3.750 71.477 1.00171.21 C ATOM 2589 CG2 ILE 359 26.453 3.112 72.434 1.00171.21 C ATOM 2590 CG1 ILE 359 28.485 2.766 70.863 1.00171.21 C ATOM 2591 CD1 ILE 359 29.486 2.222 71.883 1.00171.21 C ATOM 2592 C ILE 359 25.818 3.511 69.716 1.00171.21 C ATOM 2593 O ILE 359 25.979 2.301 69.855 1.00171.21 O ATOM 2594 N VAL 360 24.845 4.008 68.932 1.00112.75 N ATOM 2595 CA VAL 360 24.080 3.104 68.134 1.00112.75 C ATOM 2596 CB VAL 360 22.769 3.600 67.626 1.00112.75 C ATOM 2597 CG1 VAL 360 22.116 2.415 66.888 1.00112.75 C ATOM 2598 CG2 VAL 360 21.933 4.126 68.803 1.00112.75 C ATOM 2599 C VAL 360 24.961 2.791 66.967 1.00112.75 C ATOM 2600 O VAL 360 24.735 1.830 66.233 1.00112.75 O ATOM 2601 N ALA 361 26.022 3.615 66.802 1.00241.38 N ATOM 2602 CA ALA 361 26.961 3.559 65.711 1.00241.38 C ATOM 2603 CB ALA 361 27.563 2.159 65.506 1.00241.38 C ATOM 2604 C ALA 361 26.342 3.983 64.418 1.00241.38 C ATOM 2605 O ALA 361 26.457 3.300 63.401 1.00241.38 O ATOM 2606 N TRP 362 25.664 5.150 64.445 1.00 89.67 N ATOM 2607 CA TRP 362 25.079 5.739 63.275 1.00 89.67 C ATOM 2608 CB TRP 362 23.605 6.105 63.446 1.00 89.67 C ATOM 2609 CG TRP 362 22.692 4.924 63.593 1.00 89.67 C ATOM 2610 CD2 TRP 362 22.222 4.158 62.482 1.00 89.67 C ATOM 2611 CD1 TRP 362 22.140 4.373 64.707 1.00 89.67 C ATOM 2612 NE1 TRP 362 21.334 3.317 64.359 1.00 89.67 N ATOM 2613 CE2 TRP 362 21.375 3.171 62.991 1.00 89.67 C ATOM 2614 CE3 TRP 362 22.482 4.268 61.153 1.00 89.67 C ATOM 2615 CZ2 TRP 362 20.763 2.272 62.165 1.00 89.67 C ATOM 2616 CZ3 TRP 362 21.858 3.368 60.330 1.00 89.67 C ATOM 2617 CH2 TRP 362 21.012 2.394 60.817 1.00 89.67 H ATOM 2618 C TRP 362 25.775 7.041 63.048 1.00 89.67 C ATOM 2619 O TRP 362 26.545 7.496 63.892 1.00 89.67 O ATOM 2620 N ASN 363 25.532 7.669 61.880 1.00 78.90 N ATOM 2621 CA ASN 363 26.125 8.946 61.599 1.00 78.90 C ATOM 2622 CB ASN 363 26.549 9.112 60.125 1.00 78.90 C ATOM 2623 CG ASN 363 27.341 10.405 59.980 1.00 78.90 C ATOM 2624 OD1 ASN 363 26.947 11.301 59.233 1.00 78.90 O ATOM 2625 ND2 ASN 363 28.487 10.511 60.705 1.00 78.90 N ATOM 2626 C ASN 363 25.100 9.989 61.929 1.00 78.90 C ATOM 2627 O ASN 363 23.895 9.747 61.859 1.00 78.90 O ATOM 2628 N PRO 364 25.569 11.139 62.336 1.00 79.37 N ATOM 2629 CA PRO 364 24.686 12.206 62.734 1.00 79.37 C ATOM 2630 CD PRO 364 26.828 11.192 63.056 1.00 79.37 C ATOM 2631 CB PRO 364 25.501 13.119 63.656 1.00 79.37 C ATOM 2632 CG PRO 364 26.959 12.662 63.476 1.00 79.37 C ATOM 2633 C PRO 364 24.041 12.936 61.596 1.00 79.37 C ATOM 2634 O PRO 364 24.563 12.919 60.485 1.00 79.37 O ATOM 2635 N ASN 365 22.889 13.575 61.874 1.00102.09 N ATOM 2636 CA ASN 365 22.141 14.348 60.928 1.00102.09 C ATOM 2637 CB ASN 365 20.681 14.543 61.394 1.00102.09 C ATOM 2638 CG ASN 365 19.808 15.273 60.370 1.00102.09 C ATOM 2639 OD1 ASN 365 18.607 15.418 60.610 1.00102.09 O ATOM 2640 ND2 ASN 365 20.383 15.744 59.229 1.00102.09 N ATOM 2641 C ASN 365 22.809 15.687 60.885 1.00102.09 C ATOM 2642 O ASN 365 23.143 16.259 61.922 1.00102.09 O ATOM 2643 N LEU 366 23.044 16.217 59.668 1.00152.70 N ATOM 2644 CA LEU 366 23.699 17.487 59.548 1.00152.70 C ATOM 2645 CB LEU 366 25.072 17.307 58.851 1.00152.70 C ATOM 2646 CG LEU 366 25.990 18.540 58.673 1.00152.70 C ATOM 2647 CD1 LEU 366 27.363 18.101 58.145 1.00152.70 C ATOM 2648 CD2 LEU 366 25.405 19.609 57.740 1.00152.70 C ATOM 2649 C LEU 366 22.805 18.377 58.731 1.00152.70 C ATOM 2650 O LEU 366 22.896 19.601 58.795 1.00152.70 O ATOM 2651 N TRP 367 21.840 17.775 58.010 1.00111.94 N ATOM 2652 CA TRP 367 21.016 18.514 57.095 1.00111.94 C ATOM 2653 CB TRP 367 20.102 17.599 56.249 1.00111.94 C ATOM 2654 CG TRP 367 19.329 18.286 55.144 1.00111.94 C ATOM 2655 CD2 TRP 367 19.933 18.741 53.923 1.00111.94 C ATOM 2656 CD1 TRP 367 18.011 18.627 55.076 1.00111.94 C ATOM 2657 NE1 TRP 367 17.751 19.267 53.886 1.00111.94 N ATOM 2658 CE2 TRP 367 18.927 19.347 53.170 1.00111.94 C ATOM 2659 CE3 TRP 367 21.220 18.666 53.472 1.00111.94 C ATOM 2660 CZ2 TRP 367 19.196 19.892 51.946 1.00111.94 C ATOM 2661 CZ3 TRP 367 21.489 19.212 52.236 1.00111.94 C ATOM 2662 CH2 TRP 367 20.495 19.813 51.491 1.00111.94 H ATOM 2663 C TRP 367 20.199 19.526 57.841 1.00111.94 C ATOM 2664 O TRP 367 19.796 19.311 58.984 1.00111.94 O ATOM 2665 N LYS 368 19.973 20.688 57.189 1.00120.24 N ATOM 2666 CA LYS 368 19.236 21.800 57.730 1.00120.24 C ATOM 2667 CB LYS 368 19.581 23.146 57.080 1.00120.24 C ATOM 2668 CG LYS 368 21.014 23.601 57.366 1.00120.24 C ATOM 2669 CD LYS 368 21.337 23.732 58.857 1.00120.24 C ATOM 2670 CE LYS 368 21.535 22.388 59.564 1.00120.24 C ATOM 2671 NZ LYS 368 21.970 22.599 60.964 1.00120.24 N ATOM 2672 C LYS 368 17.775 21.572 57.529 1.00120.24 C ATOM 2673 O LYS 368 17.377 20.683 56.782 1.00120.24 O ATOM 2674 N LYS 369 16.932 22.388 58.193 1.00 87.66 N ATOM 2675 CA LYS 369 15.525 22.142 58.138 1.00 87.66 C ATOM 2676 CB LYS 369 14.974 21.840 59.536 1.00 87.66 C ATOM 2677 CG LYS 369 13.637 21.112 59.512 1.00 87.66 C ATOM 2678 CD LYS 369 13.344 20.472 60.868 1.00 87.66 C ATOM 2679 CE LYS 369 12.020 19.713 60.947 1.00 87.66 C ATOM 2680 NZ LYS 369 12.006 18.862 62.154 1.00 87.66 N ATOM 2681 C LYS 369 14.817 23.355 57.615 1.00 87.66 C ATOM 2682 O LYS 369 15.390 24.442 57.545 1.00 87.66 O ATOM 2683 N GLY 370 13.538 23.173 57.209 1.00111.47 N ATOM 2684 CA GLY 370 12.747 24.273 56.737 1.00111.47 C ATOM 2685 C GLY 370 11.328 23.848 56.853 1.00111.47 C ATOM 2686 O GLY 370 10.980 22.736 56.464 1.00111.47 O ATOM 2687 N THR 371 10.471 24.732 57.393 1.00264.70 N ATOM 2688 CA THR 371 9.100 24.375 57.575 1.00264.70 C ATOM 2689 CB THR 371 8.879 23.656 58.869 1.00264.70 C ATOM 2690 OG1 THR 371 7.589 23.069 58.863 1.00264.70 O ATOM 2691 CG2 THR 371 9.058 24.658 60.039 1.00264.70 C ATOM 2692 C THR 371 8.319 25.653 57.582 1.00264.70 C ATOM 2693 O THR 371 8.778 26.657 57.027 1.00264.70 O ATOM 2694 N ASN 372 7.129 25.629 58.220 1.00234.84 N ATOM 2695 CA ASN 372 6.224 26.730 58.398 1.00234.84 C ATOM 2696 CB ASN 372 6.563 27.677 59.578 1.00234.84 C ATOM 2697 CG ASN 372 7.933 28.334 59.376 1.00234.84 C ATOM 2698 OD1 ASN 372 8.974 27.701 59.350 1.00234.84 O ATOM 2699 ND2 ASN 372 7.904 29.693 59.199 1.00234.84 N ATOM 2700 C ASN 372 6.037 27.519 57.138 1.00234.84 C ATOM 2701 O ASN 372 6.489 27.152 56.057 1.00234.84 O ATOM 2702 N GLY 373 5.286 28.626 57.279 1.00123.34 N ATOM 2703 CA GLY 373 4.923 29.502 56.204 1.00123.34 C ATOM 2704 C GLY 373 6.146 30.144 55.641 1.00123.34 C ATOM 2705 O GLY 373 6.262 30.324 54.428 1.00123.34 O ATOM 2706 N TYR 374 7.101 30.507 56.511 1.00267.87 N ATOM 2707 CA TYR 374 8.286 31.161 56.051 1.00267.87 C ATOM 2708 CB TYR 374 8.449 32.588 56.616 1.00267.87 C ATOM 2709 CG TYR 374 7.392 33.392 55.933 1.00267.87 C ATOM 2710 CD1 TYR 374 7.647 33.913 54.688 1.00267.87 C ATOM 2711 CD2 TYR 374 6.153 33.616 56.498 1.00267.87 C ATOM 2712 CE1 TYR 374 6.704 34.649 54.016 1.00267.87 C ATOM 2713 CE2 TYR 374 5.200 34.356 55.826 1.00267.87 C ATOM 2714 CZ TYR 374 5.476 34.874 54.579 1.00267.87 C ATOM 2715 OH TYR 374 4.524 35.630 53.862 1.00267.87 H ATOM 2716 C TYR 374 9.428 30.291 56.431 1.00267.87 C ATOM 2717 O TYR 374 9.179 29.145 56.823 1.00267.87 O ATOM 2718 N PRO 375 10.655 30.725 56.315 1.00297.46 N ATOM 2719 CA PRO 375 11.739 29.824 56.586 1.00297.46 C ATOM 2720 CD PRO 375 11.027 31.727 55.320 1.00297.46 C ATOM 2721 CB PRO 375 13.003 30.585 56.170 1.00297.46 C ATOM 2722 CG PRO 375 12.502 31.465 55.003 1.00297.46 C ATOM 2723 C PRO 375 11.647 29.252 57.968 1.00297.46 C ATOM 2724 O PRO 375 11.258 29.963 58.901 1.00297.46 O ATOM 2725 N ILE 376 11.979 27.953 58.095 1.00319.84 N ATOM 2726 CA ILE 376 11.767 27.167 59.275 1.00319.84 C ATOM 2727 CB ILE 376 12.522 25.875 59.287 1.00319.84 C ATOM 2728 CG2 ILE 376 14.008 26.221 59.109 1.00319.84 C ATOM 2729 CG1 ILE 376 12.215 25.090 60.584 1.00319.84 C ATOM 2730 CD1 ILE 376 12.939 23.758 60.679 1.00319.84 C ATOM 2731 C ILE 376 12.160 27.848 60.535 1.00319.84 C ATOM 2732 O ILE 376 13.287 28.310 60.743 1.00319.84 O ATOM 2733 N PHE 377 11.164 27.906 61.420 1.00363.49 N ATOM 2734 CA PHE 377 11.387 28.351 62.751 1.00363.49 C ATOM 2735 CB PHE 377 12.208 29.644 62.879 1.00363.49 C ATOM 2736 CG PHE 377 12.660 29.683 64.291 1.00363.49 C ATOM 2737 CD1 PHE 377 13.746 28.925 64.653 1.00363.49 C ATOM 2738 CD2 PHE 377 12.018 30.439 65.243 1.00363.49 C ATOM 2739 CE1 PHE 377 14.208 28.934 65.944 1.00363.49 C ATOM 2740 CE2 PHE 377 12.480 30.450 66.538 1.00363.49 C ATOM 2741 CZ PHE 377 13.571 29.694 66.894 1.00363.49 C ATOM 2742 C PHE 377 10.045 28.645 63.309 1.00363.49 C ATOM 2743 O PHE 377 9.131 29.033 62.582 1.00363.49 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 215 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.10 30.8 52 86.7 60 ARMSMC SECONDARY STRUCTURE . . 98.32 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 95.79 26.2 42 84.0 50 ARMSMC BURIED . . . . . . . . 67.98 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.71 40.9 22 84.6 26 ARMSSC1 RELIABLE SIDE CHAINS . 84.61 38.1 21 84.0 25 ARMSSC1 SECONDARY STRUCTURE . . 73.48 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 85.71 36.8 19 82.6 23 ARMSSC1 BURIED . . . . . . . . 60.40 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.99 47.4 19 86.4 22 ARMSSC2 RELIABLE SIDE CHAINS . 71.44 61.5 13 81.2 16 ARMSSC2 SECONDARY STRUCTURE . . 69.09 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 89.83 41.2 17 85.0 20 ARMSSC2 BURIED . . . . . . . . 5.60 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 52.40 75.0 4 66.7 6 ARMSSC3 RELIABLE SIDE CHAINS . 52.40 75.0 4 80.0 5 ARMSSC3 SECONDARY STRUCTURE . . 7.84 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 52.40 75.0 4 66.7 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 12.29 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 12.29 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 12.29 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.46 (Number of atoms: 27) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.46 27 87.1 31 CRMSCA CRN = ALL/NP . . . . . 0.3503 CRMSCA SECONDARY STRUCTURE . . 9.02 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.92 22 84.6 26 CRMSCA BURIED . . . . . . . . 11.53 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.52 132 86.8 152 CRMSMC SECONDARY STRUCTURE . . 9.09 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.94 109 84.5 129 CRMSMC BURIED . . . . . . . . 11.92 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.26 107 82.3 130 CRMSSC RELIABLE SIDE CHAINS . 11.55 93 81.6 114 CRMSSC SECONDARY STRUCTURE . . 9.81 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.63 97 80.8 120 CRMSSC BURIED . . . . . . . . 16.14 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.40 215 84.6 254 CRMSALL SECONDARY STRUCTURE . . 9.36 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.88 185 82.6 224 CRMSALL BURIED . . . . . . . . 13.19 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 153.182 0.888 0.895 27 87.1 31 ERRCA SECONDARY STRUCTURE . . 122.110 0.865 0.874 11 100.0 11 ERRCA SURFACE . . . . . . . . 154.148 0.895 0.902 22 84.6 26 ERRCA BURIED . . . . . . . . 148.934 0.857 0.867 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 154.211 0.888 0.895 132 86.8 152 ERRMC SECONDARY STRUCTURE . . 122.495 0.864 0.873 54 100.0 54 ERRMC SURFACE . . . . . . . . 154.481 0.895 0.901 109 84.5 129 ERRMC BURIED . . . . . . . . 152.931 0.856 0.866 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 151.249 0.873 0.882 107 82.3 130 ERRSC RELIABLE SIDE CHAINS . 155.738 0.874 0.883 93 81.6 114 ERRSC SECONDARY STRUCTURE . . 100.516 0.845 0.857 41 100.0 41 ERRSC SURFACE . . . . . . . . 148.737 0.877 0.886 97 80.8 120 ERRSC BURIED . . . . . . . . 175.619 0.834 0.847 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 152.206 0.880 0.888 215 84.6 254 ERRALL SECONDARY STRUCTURE . . 111.739 0.855 0.866 85 100.0 85 ERRALL SURFACE . . . . . . . . 151.288 0.885 0.893 185 82.6 224 ERRALL BURIED . . . . . . . . 157.864 0.850 0.861 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 5 17 27 31 DISTCA CA (P) 0.00 0.00 6.45 16.13 54.84 31 DISTCA CA (RMS) 0.00 0.00 2.90 3.45 6.59 DISTCA ALL (N) 0 3 11 40 137 215 254 DISTALL ALL (P) 0.00 1.18 4.33 15.75 53.94 254 DISTALL ALL (RMS) 0.00 1.50 2.32 3.53 6.84 DISTALL END of the results output