####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS153_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS153_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 353 - 365 4.82 13.43 LONGEST_CONTINUOUS_SEGMENT: 13 354 - 366 4.90 12.75 LCS_AVERAGE: 39.75 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.94 18.81 LCS_AVERAGE: 16.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 355 - 358 0.98 23.64 LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.60 12.64 LONGEST_CONTINUOUS_SEGMENT: 4 367 - 370 0.45 16.02 LONGEST_CONTINUOUS_SEGMENT: 4 369 - 372 0.82 21.30 LONGEST_CONTINUOUS_SEGMENT: 4 372 - 375 0.42 17.94 LONGEST_CONTINUOUS_SEGMENT: 4 374 - 377 0.72 12.49 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.91 13.82 LONGEST_CONTINUOUS_SEGMENT: 4 378 - 381 0.46 11.82 LCS_AVERAGE: 12.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 0 3 3 3 6 7 9 9 11 12 12 13 14 16 16 17 17 20 21 LCS_GDT A 352 A 352 3 3 10 0 3 3 3 4 4 7 9 9 11 12 12 13 16 17 17 18 19 22 23 LCS_GDT E 353 E 353 3 3 13 3 3 5 5 5 5 5 7 10 11 12 12 13 16 17 19 20 23 23 23 LCS_GDT E 354 E 354 3 4 13 3 4 5 5 5 6 7 9 10 11 11 14 15 17 18 20 20 23 23 23 LCS_GDT L 355 L 355 4 5 13 3 4 5 5 5 6 7 9 10 11 11 14 15 17 18 20 20 23 23 23 LCS_GDT G 356 G 356 4 5 13 3 3 4 4 5 5 5 6 9 11 11 12 14 14 15 17 19 23 23 23 LCS_GDT N 357 N 357 4 5 13 3 3 4 4 5 5 5 6 8 8 9 12 12 14 14 16 17 18 19 20 LCS_GDT I 358 I 358 4 5 13 3 4 5 5 5 6 7 9 10 11 11 14 14 17 18 20 20 23 23 23 LCS_GDT I 359 I 359 3 5 13 3 3 3 4 5 5 5 9 10 11 11 14 14 17 18 20 20 23 23 23 LCS_GDT V 360 V 360 3 3 13 3 3 3 4 4 5 7 9 10 11 11 14 14 17 18 20 20 23 23 23 LCS_GDT A 361 A 361 3 3 13 1 3 4 5 5 6 7 7 9 11 11 14 15 17 18 20 20 23 23 23 LCS_GDT W 362 W 362 4 4 13 3 4 5 5 5 6 7 7 9 11 11 12 15 17 18 20 20 23 23 23 LCS_GDT N 363 N 363 4 4 13 3 4 5 5 5 6 7 7 9 11 11 12 15 17 18 20 20 23 23 23 LCS_GDT P 364 P 364 4 4 13 3 4 5 5 5 6 7 7 9 11 11 12 15 17 18 20 20 23 23 23 LCS_GDT N 365 N 365 4 4 13 3 4 5 5 5 6 7 7 9 11 11 12 15 16 18 20 20 23 23 23 LCS_GDT L 366 L 366 3 4 13 3 3 3 4 4 5 6 9 9 11 12 12 15 16 18 20 20 23 23 23 LCS_GDT W 367 W 367 4 5 12 3 4 4 5 6 6 7 9 9 11 12 12 13 16 17 18 19 21 22 23 LCS_GDT K 368 K 368 4 5 12 3 4 4 5 6 6 7 9 9 11 12 12 15 16 18 20 20 23 23 23 LCS_GDT K 369 K 369 4 5 12 3 4 4 4 6 6 7 9 9 11 12 12 15 17 18 20 20 23 23 23 LCS_GDT G 370 G 370 4 5 12 3 4 4 5 6 6 7 9 9 11 12 12 15 17 18 20 20 23 23 23 LCS_GDT T 371 T 371 4 5 12 3 4 5 5 5 7 9 9 10 10 12 14 14 17 18 20 20 23 23 23 LCS_GDT N 372 N 372 4 8 12 3 4 5 6 7 8 9 9 10 11 12 14 15 17 18 20 20 23 23 23 LCS_GDT G 373 G 373 4 8 12 3 4 5 6 7 8 9 9 9 9 10 14 15 17 18 20 20 23 23 23 LCS_GDT Y 374 Y 374 4 8 12 3 4 5 6 7 8 9 9 9 11 12 14 15 17 18 20 20 23 23 23 LCS_GDT P 375 P 375 4 8 12 3 4 5 6 7 8 9 9 9 11 12 14 15 17 18 20 20 23 23 23 LCS_GDT I 376 I 376 4 8 12 3 4 4 6 6 8 9 9 9 10 11 14 15 17 18 20 20 23 23 23 LCS_GDT F 377 F 377 4 8 12 3 4 5 6 7 8 9 9 10 10 11 14 14 15 16 17 20 23 23 23 LCS_GDT Q 378 Q 378 4 8 12 3 4 4 5 7 8 9 9 10 10 11 14 14 14 16 17 17 18 21 21 LCS_GDT W 379 W 379 4 8 12 3 4 5 6 7 8 9 9 9 10 10 11 14 14 15 17 17 18 19 21 LCS_GDT S 380 S 380 4 4 12 3 4 4 4 5 5 5 7 9 10 10 11 14 14 15 16 17 18 19 20 LCS_GDT E 381 E 381 4 4 12 3 4 4 4 5 5 5 6 7 9 10 10 14 14 15 16 17 18 19 19 LCS_AVERAGE LCS_A: 22.86 ( 12.07 16.75 39.75 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 7 8 9 9 10 11 12 14 15 17 18 20 20 23 23 23 GDT PERCENT_AT 9.68 12.90 16.13 19.35 22.58 25.81 29.03 29.03 32.26 35.48 38.71 45.16 48.39 54.84 58.06 64.52 64.52 74.19 74.19 74.19 GDT RMS_LOCAL 0.01 0.42 0.78 1.36 1.67 1.94 2.47 2.47 3.03 3.85 3.88 4.63 5.48 5.83 6.00 6.24 6.24 6.82 6.82 6.82 GDT RMS_ALL_AT 21.24 17.94 13.57 18.53 18.50 18.81 18.53 18.53 11.59 12.62 13.95 11.01 11.57 10.69 10.83 10.92 10.92 10.42 10.42 10.42 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 27.422 0 0.103 0.540 28.142 0.000 0.000 LGA A 352 A 352 23.439 0 0.605 0.593 25.166 0.000 0.000 LGA E 353 E 353 24.334 0 0.589 0.920 25.519 0.000 0.000 LGA E 354 E 354 28.517 0 0.532 0.909 36.235 0.000 0.000 LGA L 355 L 355 25.090 0 0.598 1.337 25.872 0.000 0.000 LGA G 356 G 356 23.740 0 0.325 0.325 25.600 0.000 0.000 LGA N 357 N 357 26.410 0 0.353 0.426 28.122 0.000 0.000 LGA I 358 I 358 26.876 0 0.587 0.908 27.157 0.000 0.000 LGA I 359 I 359 24.279 0 0.581 0.611 27.046 0.000 0.000 LGA V 360 V 360 18.972 0 0.610 0.612 21.448 0.000 0.000 LGA A 361 A 361 22.446 0 0.677 0.615 23.251 0.000 0.000 LGA W 362 W 362 22.950 0 0.625 1.022 26.359 0.000 0.000 LGA N 363 N 363 21.775 0 0.024 0.139 23.087 0.000 0.000 LGA P 364 P 364 22.127 0 0.682 0.597 25.521 0.000 0.000 LGA N 365 N 365 22.855 0 0.689 0.695 24.914 0.000 0.000 LGA L 366 L 366 22.643 0 0.085 1.417 22.886 0.000 0.000 LGA W 367 W 367 20.726 0 0.532 1.336 23.391 0.000 0.000 LGA K 368 K 368 18.407 0 0.023 0.868 20.980 0.000 0.000 LGA K 369 K 369 15.175 0 0.670 0.560 23.660 0.000 0.000 LGA G 370 G 370 9.274 0 0.034 0.034 11.210 7.024 7.024 LGA T 371 T 371 3.780 0 0.101 0.125 5.909 48.095 48.095 LGA N 372 N 372 3.066 0 0.482 1.161 10.149 57.500 33.571 LGA G 373 G 373 2.106 0 0.088 0.088 2.106 70.952 70.952 LGA Y 374 Y 374 1.532 0 0.594 1.402 7.396 75.238 48.254 LGA P 375 P 375 3.162 0 0.041 0.369 6.537 59.643 42.789 LGA I 376 I 376 2.075 0 0.575 1.601 8.053 75.238 47.143 LGA F 377 F 377 1.165 0 0.022 1.135 2.350 81.548 77.706 LGA Q 378 Q 378 1.986 0 0.632 0.968 10.350 79.405 42.646 LGA W 379 W 379 2.223 0 0.528 1.457 9.540 60.476 43.061 LGA S 380 S 380 7.533 0 0.626 0.827 9.287 8.571 6.746 LGA E 381 E 381 12.083 1 0.403 0.770 17.064 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.475 9.467 10.573 20.119 15.096 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.47 31.452 27.406 0.350 LGA_LOCAL RMSD: 2.473 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.527 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.475 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.242037 * X + 0.351225 * Y + -0.904466 * Z + 5.903486 Y_new = -0.283185 * X + -0.917167 * Y + -0.280377 * Z + 60.115211 Z_new = -0.928022 * X + 0.188270 * Y + 0.321450 * Z + 36.170990 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.278011 1.189067 0.529830 [DEG: -130.5204 68.1285 30.3570 ] ZXZ: -1.270199 1.243536 -1.370641 [DEG: -72.7770 71.2494 -78.5319 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS153_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS153_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.47 27.406 9.47 REMARK ---------------------------------------------------------- MOLECULE T0537TS153_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 15.794 37.426 55.773 1.00 0.00 N ATOM 2530 CA SER 351 14.793 37.929 56.706 1.00 0.00 C ATOM 2531 C SER 351 14.584 36.961 57.863 1.00 0.00 C ATOM 2532 O SER 351 14.445 35.755 57.661 1.00 0.00 O ATOM 2533 CB SER 351 13.485 38.179 55.982 1.00 0.00 C ATOM 2534 OG SER 351 12.476 38.612 56.853 1.00 0.00 O ATOM 2535 N ALA 352 14.563 37.497 59.080 1.00 0.00 N ATOM 2536 CA ALA 352 14.477 36.673 60.280 1.00 0.00 C ATOM 2537 C ALA 352 13.682 37.373 61.375 1.00 0.00 C ATOM 2538 O ALA 352 13.665 38.602 61.453 1.00 0.00 O ATOM 2539 CB ALA 352 15.870 36.316 60.776 1.00 0.00 C ATOM 2540 N GLU 353 13.023 36.584 62.217 1.00 0.00 N ATOM 2541 CA GLU 353 12.263 37.127 63.337 1.00 0.00 C ATOM 2542 C GLU 353 12.621 36.423 64.639 1.00 0.00 C ATOM 2543 O GLU 353 12.980 35.245 64.640 1.00 0.00 O ATOM 2544 CB GLU 353 10.760 37.008 63.071 1.00 0.00 C ATOM 2545 CG GLU 353 10.271 37.795 61.864 1.00 0.00 C ATOM 2546 CD GLU 353 8.786 37.646 61.678 1.00 0.00 C ATOM 2547 OE1 GLU 353 8.183 36.921 62.434 1.00 0.00 O ATOM 2548 OE2 GLU 353 8.237 38.340 60.857 1.00 0.00 O ATOM 2549 N GLU 354 12.523 37.150 65.745 1.00 0.00 N ATOM 2550 CA GLU 354 12.877 36.609 67.053 1.00 0.00 C ATOM 2551 C GLU 354 11.805 35.650 67.559 1.00 0.00 C ATOM 2552 O GLU 354 11.030 35.987 68.451 1.00 0.00 O ATOM 2553 CB GLU 354 13.091 37.740 68.060 1.00 0.00 C ATOM 2554 CG GLU 354 13.743 37.305 69.365 1.00 0.00 C ATOM 2555 CD GLU 354 14.003 38.481 70.265 1.00 0.00 C ATOM 2556 OE1 GLU 354 13.801 39.590 69.834 1.00 0.00 O ATOM 2557 OE2 GLU 354 14.295 38.268 71.418 1.00 0.00 O ATOM 2558 N LEU 355 11.774 34.451 66.986 1.00 0.00 N ATOM 2559 CA LEU 355 10.842 33.418 67.422 1.00 0.00 C ATOM 2560 C LEU 355 11.122 32.996 68.858 1.00 0.00 C ATOM 2561 O LEU 355 12.137 32.360 69.141 1.00 0.00 O ATOM 2562 CB LEU 355 10.918 32.207 66.485 1.00 0.00 C ATOM 2563 CG LEU 355 9.918 31.084 66.788 1.00 0.00 C ATOM 2564 CD1 LEU 355 8.497 31.560 66.518 1.00 0.00 C ATOM 2565 CD2 LEU 355 10.249 29.864 65.941 1.00 0.00 C ATOM 2566 N GLY 356 10.215 33.351 69.761 1.00 0.00 N ATOM 2567 CA GLY 356 10.399 33.076 71.182 1.00 0.00 C ATOM 2568 C GLY 356 11.598 33.832 71.739 1.00 0.00 C ATOM 2569 O GLY 356 11.570 35.056 71.862 1.00 0.00 O ATOM 2570 N ASN 357 12.652 33.096 72.076 1.00 0.00 N ATOM 2571 CA ASN 357 13.875 33.699 72.592 1.00 0.00 C ATOM 2572 C ASN 357 15.054 33.433 71.664 1.00 0.00 C ATOM 2573 O ASN 357 16.206 33.428 72.096 1.00 0.00 O ATOM 2574 CB ASN 357 14.187 33.206 73.993 1.00 0.00 C ATOM 2575 CG ASN 357 13.156 33.595 75.015 1.00 0.00 C ATOM 2576 OD1 ASN 357 13.009 34.773 75.361 1.00 0.00 O ATOM 2577 ND2 ASN 357 12.497 32.604 75.558 1.00 0.00 N ATOM 2578 N ILE 358 14.758 33.213 70.388 1.00 0.00 N ATOM 2579 CA ILE 358 15.795 32.948 69.396 1.00 0.00 C ATOM 2580 C ILE 358 15.405 33.502 68.032 1.00 0.00 C ATOM 2581 O ILE 358 14.248 33.411 67.621 1.00 0.00 O ATOM 2582 CB ILE 358 16.080 31.441 69.265 1.00 0.00 C ATOM 2583 CG1 ILE 358 17.255 31.201 68.313 1.00 0.00 C ATOM 2584 CG2 ILE 358 14.840 30.704 68.782 1.00 0.00 C ATOM 2585 CD1 ILE 358 17.798 29.792 68.358 1.00 0.00 C ATOM 2586 N ILE 359 16.377 34.077 67.333 1.00 0.00 N ATOM 2587 CA ILE 359 16.139 34.641 66.009 1.00 0.00 C ATOM 2588 C ILE 359 16.200 33.564 64.933 1.00 0.00 C ATOM 2589 O ILE 359 17.234 32.925 64.736 1.00 0.00 O ATOM 2590 CB ILE 359 17.157 35.746 65.675 1.00 0.00 C ATOM 2591 CG1 ILE 359 17.038 36.902 66.673 1.00 0.00 C ATOM 2592 CG2 ILE 359 16.954 36.245 64.252 1.00 0.00 C ATOM 2593 CD1 ILE 359 18.146 37.924 66.559 1.00 0.00 C ATOM 2594 N VAL 360 15.085 33.369 64.238 1.00 0.00 N ATOM 2595 CA VAL 360 14.996 32.342 63.206 1.00 0.00 C ATOM 2596 C VAL 360 14.741 32.957 61.836 1.00 0.00 C ATOM 2597 O VAL 360 13.820 33.756 61.665 1.00 0.00 O ATOM 2598 CB VAL 360 13.883 31.323 63.515 1.00 0.00 C ATOM 2599 CG1 VAL 360 13.773 30.298 62.396 1.00 0.00 C ATOM 2600 CG2 VAL 360 14.146 30.633 64.845 1.00 0.00 C ATOM 2601 N ALA 361 15.563 32.581 60.862 1.00 0.00 N ATOM 2602 CA ALA 361 15.370 33.017 59.485 1.00 0.00 C ATOM 2603 C ALA 361 14.241 32.243 58.816 1.00 0.00 C ATOM 2604 O ALA 361 14.063 31.049 59.062 1.00 0.00 O ATOM 2605 CB ALA 361 16.661 32.866 58.695 1.00 0.00 C ATOM 2606 N TRP 362 13.481 32.926 57.967 1.00 0.00 N ATOM 2607 CA TRP 362 12.292 32.342 57.360 1.00 0.00 C ATOM 2608 C TRP 362 12.377 32.376 55.839 1.00 0.00 C ATOM 2609 O TRP 362 12.851 33.352 55.257 1.00 0.00 O ATOM 2610 CB TRP 362 11.035 33.076 57.831 1.00 0.00 C ATOM 2611 CG TRP 362 10.866 33.078 59.322 1.00 0.00 C ATOM 2612 CD1 TRP 362 11.244 34.064 60.182 1.00 0.00 C ATOM 2613 CD2 TRP 362 10.277 32.047 60.123 1.00 0.00 C ATOM 2614 NE1 TRP 362 10.928 33.712 61.472 1.00 0.00 N ATOM 2615 CE2 TRP 362 10.332 32.476 61.460 1.00 0.00 C ATOM 2616 CE3 TRP 362 9.707 30.800 59.836 1.00 0.00 C ATOM 2617 CZ2 TRP 362 9.844 31.710 62.508 1.00 0.00 C ATOM 2618 CZ3 TRP 362 9.217 30.032 60.886 1.00 0.00 C ATOM 2619 CH2 TRP 362 9.283 30.474 62.183 1.00 0.00 H ATOM 2620 N ASN 363 11.912 31.307 55.202 1.00 0.00 N ATOM 2621 CA ASN 363 11.896 31.231 53.746 1.00 0.00 C ATOM 2622 C ASN 363 10.781 30.315 53.254 1.00 0.00 C ATOM 2623 O ASN 363 10.966 29.104 53.141 1.00 0.00 O ATOM 2624 CB ASN 363 13.235 30.770 53.201 1.00 0.00 C ATOM 2625 CG ASN 363 13.375 30.943 51.714 1.00 0.00 C ATOM 2626 OD1 ASN 363 12.382 31.080 50.989 1.00 0.00 O ATOM 2627 ND2 ASN 363 14.594 30.855 51.247 1.00 0.00 N ATOM 2628 N PRO 364 9.626 30.903 52.964 1.00 0.00 N ATOM 2629 CA PRO 364 8.470 30.136 52.515 1.00 0.00 C ATOM 2630 C PRO 364 8.803 29.309 51.279 1.00 0.00 C ATOM 2631 O PRO 364 9.568 29.744 50.418 1.00 0.00 O ATOM 2632 CB PRO 364 7.404 31.199 52.228 1.00 0.00 C ATOM 2633 CG PRO 364 7.780 32.346 53.104 1.00 0.00 C ATOM 2634 CD PRO 364 9.285 32.346 53.139 1.00 0.00 C ATOM 2635 N ASN 365 8.223 28.116 51.198 1.00 0.00 N ATOM 2636 CA ASN 365 8.393 27.261 50.030 1.00 0.00 C ATOM 2637 C ASN 365 7.821 27.916 48.779 1.00 0.00 C ATOM 2638 O ASN 365 7.005 28.834 48.865 1.00 0.00 O ATOM 2639 CB ASN 365 7.761 25.898 50.243 1.00 0.00 C ATOM 2640 CG ASN 365 8.395 24.802 49.433 1.00 0.00 C ATOM 2641 OD1 ASN 365 9.138 25.060 48.478 1.00 0.00 O ATOM 2642 ND2 ASN 365 8.044 23.585 49.756 1.00 0.00 N ATOM 2643 N LEU 366 8.255 27.442 47.618 1.00 0.00 N ATOM 2644 CA LEU 366 7.729 27.926 46.346 1.00 0.00 C ATOM 2645 C LEU 366 6.288 27.480 46.139 1.00 0.00 C ATOM 2646 O LEU 366 5.487 28.192 45.535 1.00 0.00 O ATOM 2647 CB LEU 366 8.609 27.440 45.188 1.00 0.00 C ATOM 2648 CG LEU 366 10.017 28.050 45.137 1.00 0.00 C ATOM 2649 CD1 LEU 366 10.838 27.376 44.046 1.00 0.00 C ATOM 2650 CD2 LEU 366 9.913 29.547 44.886 1.00 0.00 C ATOM 2651 N TRP 367 5.963 26.294 46.645 1.00 0.00 N ATOM 2652 CA TRP 367 4.606 25.767 46.550 1.00 0.00 C ATOM 2653 C TRP 367 3.720 26.322 47.657 1.00 0.00 C ATOM 2654 O TRP 367 2.711 26.972 47.390 1.00 0.00 O ATOM 2655 CB TRP 367 4.625 24.238 46.609 1.00 0.00 C ATOM 2656 CG TRP 367 3.261 23.620 46.534 1.00 0.00 C ATOM 2657 CD1 TRP 367 2.120 24.216 46.088 1.00 0.00 C ATOM 2658 CD2 TRP 367 2.897 22.288 46.917 1.00 0.00 C ATOM 2659 NE1 TRP 367 1.066 23.339 46.169 1.00 0.00 N ATOM 2660 CE2 TRP 367 1.518 22.147 46.674 1.00 0.00 C ATOM 2661 CE3 TRP 367 3.605 21.200 47.442 1.00 0.00 C ATOM 2662 CZ2 TRP 367 0.835 20.971 46.938 1.00 0.00 C ATOM 2663 CZ3 TRP 367 2.919 20.020 47.704 1.00 0.00 C ATOM 2664 CH2 TRP 367 1.573 19.908 47.459 1.00 0.00 H ATOM 2665 N LYS 368 4.104 26.060 48.902 1.00 0.00 N ATOM 2666 CA LYS 368 3.303 26.464 50.052 1.00 0.00 C ATOM 2667 C LYS 368 3.992 27.569 50.842 1.00 0.00 C ATOM 2668 O LYS 368 5.210 27.727 50.775 1.00 0.00 O ATOM 2669 CB LYS 368 3.026 25.264 50.958 1.00 0.00 C ATOM 2670 CG LYS 368 2.171 24.177 50.320 1.00 0.00 C ATOM 2671 CD LYS 368 1.870 23.057 51.306 1.00 0.00 C ATOM 2672 CE LYS 368 0.961 22.005 50.689 1.00 0.00 C ATOM 2673 NZ LYS 368 0.596 20.943 51.666 1.00 0.00 N ATOM 2674 N LYS 369 3.203 28.332 51.591 1.00 0.00 N ATOM 2675 CA LYS 369 3.729 29.453 52.363 1.00 0.00 C ATOM 2676 C LYS 369 4.448 28.968 53.615 1.00 0.00 C ATOM 2677 O LYS 369 5.138 29.739 54.283 1.00 0.00 O ATOM 2678 CB LYS 369 2.604 30.418 52.741 1.00 0.00 C ATOM 2679 CG LYS 369 1.974 31.144 51.560 1.00 0.00 C ATOM 2680 CD LYS 369 0.863 32.078 52.014 1.00 0.00 C ATOM 2681 CE LYS 369 0.244 32.817 50.837 1.00 0.00 C ATOM 2682 NZ LYS 369 -0.855 33.725 51.264 1.00 0.00 N ATOM 2683 N GLY 370 4.278 27.690 53.932 1.00 0.00 N ATOM 2684 CA GLY 370 4.918 27.099 55.102 1.00 0.00 C ATOM 2685 C GLY 370 6.428 27.023 54.924 1.00 0.00 C ATOM 2686 O GLY 370 6.936 27.076 53.804 1.00 0.00 O ATOM 2687 N THR 371 7.144 26.900 56.038 1.00 0.00 N ATOM 2688 CA THR 371 8.599 26.812 56.007 1.00 0.00 C ATOM 2689 C THR 371 9.085 25.499 56.607 1.00 0.00 C ATOM 2690 O THR 371 10.256 25.142 56.475 1.00 0.00 O ATOM 2691 CB THR 371 9.251 27.984 56.765 1.00 0.00 C ATOM 2692 OG1 THR 371 8.888 27.921 58.150 1.00 0.00 O ATOM 2693 CG2 THR 371 8.796 29.314 56.185 1.00 0.00 C ATOM 2694 N ASN 372 8.180 24.785 57.266 1.00 0.00 N ATOM 2695 CA ASN 372 8.531 23.550 57.956 1.00 0.00 C ATOM 2696 C ASN 372 8.889 22.448 56.967 1.00 0.00 C ATOM 2697 O ASN 372 8.023 21.924 56.268 1.00 0.00 O ATOM 2698 CB ASN 372 7.414 23.089 58.873 1.00 0.00 C ATOM 2699 CG ASN 372 7.787 21.919 59.742 1.00 0.00 C ATOM 2700 OD1 ASN 372 8.668 21.123 59.401 1.00 0.00 O ATOM 2701 ND2 ASN 372 7.065 21.767 60.823 1.00 0.00 N ATOM 2702 N GLY 373 10.172 22.101 56.912 1.00 0.00 N ATOM 2703 CA GLY 373 10.642 21.044 56.028 1.00 0.00 C ATOM 2704 C GLY 373 11.252 21.619 54.756 1.00 0.00 C ATOM 2705 O GLY 373 11.771 20.883 53.916 1.00 0.00 O ATOM 2706 N TYR 374 11.187 22.939 54.620 1.00 0.00 N ATOM 2707 CA TYR 374 11.742 23.617 53.453 1.00 0.00 C ATOM 2708 C TYR 374 13.261 23.503 53.422 1.00 0.00 C ATOM 2709 O TYR 374 13.844 23.144 52.399 1.00 0.00 O ATOM 2710 CB TYR 374 11.327 25.090 53.442 1.00 0.00 C ATOM 2711 CG TYR 374 12.036 25.919 52.395 1.00 0.00 C ATOM 2712 CD1 TYR 374 11.593 25.940 51.081 1.00 0.00 C ATOM 2713 CD2 TYR 374 13.148 26.682 52.724 1.00 0.00 C ATOM 2714 CE1 TYR 374 12.238 26.695 50.120 1.00 0.00 C ATOM 2715 CE2 TYR 374 13.800 27.441 51.773 1.00 0.00 C ATOM 2716 CZ TYR 374 13.342 27.445 50.472 1.00 0.00 C ATOM 2717 OH TYR 374 13.988 28.200 49.520 1.00 0.00 H ATOM 2718 N PRO 375 13.896 23.811 54.546 1.00 0.00 N ATOM 2719 CA PRO 375 15.351 23.780 54.638 1.00 0.00 C ATOM 2720 C PRO 375 15.863 22.354 54.809 1.00 0.00 C ATOM 2721 O PRO 375 15.140 21.480 55.287 1.00 0.00 O ATOM 2722 CB PRO 375 15.666 24.657 55.855 1.00 0.00 C ATOM 2723 CG PRO 375 14.509 24.450 56.772 1.00 0.00 C ATOM 2724 CD PRO 375 13.305 24.335 55.876 1.00 0.00 C ATOM 2725 N ILE 376 17.112 22.130 54.417 1.00 0.00 N ATOM 2726 CA ILE 376 17.713 20.804 54.502 1.00 0.00 C ATOM 2727 C ILE 376 18.765 20.746 55.603 1.00 0.00 C ATOM 2728 O ILE 376 18.837 19.776 56.356 1.00 0.00 O ATOM 2729 CB ILE 376 18.359 20.390 53.167 1.00 0.00 C ATOM 2730 CG1 ILE 376 17.315 20.391 52.047 1.00 0.00 C ATOM 2731 CG2 ILE 376 19.008 19.020 53.293 1.00 0.00 C ATOM 2732 CD1 ILE 376 16.168 19.433 52.279 1.00 0.00 C ATOM 2733 N PHE 377 19.580 21.791 55.689 1.00 0.00 N ATOM 2734 CA PHE 377 20.720 21.801 56.601 1.00 0.00 C ATOM 2735 C PHE 377 21.036 23.213 57.074 1.00 0.00 C ATOM 2736 O PHE 377 20.694 24.191 56.409 1.00 0.00 O ATOM 2737 CB PHE 377 21.947 21.184 55.928 1.00 0.00 C ATOM 2738 CG PHE 377 22.438 21.958 54.737 1.00 0.00 C ATOM 2739 CD1 PHE 377 23.416 22.930 54.880 1.00 0.00 C ATOM 2740 CD2 PHE 377 21.923 21.715 53.472 1.00 0.00 C ATOM 2741 CE1 PHE 377 23.869 23.643 53.785 1.00 0.00 C ATOM 2742 CE2 PHE 377 22.374 22.425 52.377 1.00 0.00 C ATOM 2743 CZ PHE 377 23.347 23.391 52.534 1.00 0.00 C ATOM 2744 N GLN 378 21.689 23.312 58.227 1.00 0.00 N ATOM 2745 CA GLN 378 22.201 24.590 58.708 1.00 0.00 C ATOM 2746 C GLN 378 23.295 24.388 59.747 1.00 0.00 C ATOM 2747 O GLN 378 23.108 23.667 60.728 1.00 0.00 O ATOM 2748 CB GLN 378 21.071 25.431 59.306 1.00 0.00 C ATOM 2749 CG GLN 378 21.503 26.807 59.781 1.00 0.00 C ATOM 2750 CD GLN 378 20.326 27.680 60.174 1.00 0.00 C ATOM 2751 OE1 GLN 378 19.169 27.250 60.116 1.00 0.00 O ATOM 2752 NE2 GLN 378 20.612 28.914 60.573 1.00 0.00 N ATOM 2753 N TRP 379 24.440 25.027 59.527 1.00 0.00 N ATOM 2754 CA TRP 379 25.572 24.907 60.439 1.00 0.00 C ATOM 2755 C TRP 379 26.175 26.271 60.749 1.00 0.00 C ATOM 2756 O TRP 379 26.793 26.896 59.889 1.00 0.00 O ATOM 2757 CB TRP 379 26.638 23.984 59.844 1.00 0.00 C ATOM 2758 CG TRP 379 26.071 22.829 59.078 1.00 0.00 C ATOM 2759 CD1 TRP 379 26.074 22.668 57.724 1.00 0.00 C ATOM 2760 CD2 TRP 379 25.418 21.673 59.618 1.00 0.00 C ATOM 2761 NE1 TRP 379 25.462 21.486 57.386 1.00 0.00 N ATOM 2762 CE2 TRP 379 25.051 20.856 58.533 1.00 0.00 C ATOM 2763 CE3 TRP 379 25.108 21.251 60.917 1.00 0.00 C ATOM 2764 CZ2 TRP 379 24.395 19.648 58.702 1.00 0.00 C ATOM 2765 CZ3 TRP 379 24.449 20.039 61.085 1.00 0.00 C ATOM 2766 CH2 TRP 379 24.103 19.260 60.010 1.00 0.00 H ATOM 2767 N SER 380 25.991 26.724 61.984 1.00 0.00 N ATOM 2768 CA SER 380 26.399 28.070 62.374 1.00 0.00 C ATOM 2769 C SER 380 26.937 28.089 63.799 1.00 0.00 C ATOM 2770 O SER 380 27.246 29.151 64.341 1.00 0.00 O ATOM 2771 CB SER 380 25.234 29.030 62.236 1.00 0.00 C ATOM 2772 OG SER 380 24.174 28.697 63.091 1.00 0.00 O ATOM 2773 N GLU 381 27.047 26.910 64.402 1.00 0.00 N ATOM 2774 CA GLU 381 27.468 26.797 65.793 1.00 0.00 C ATOM 2775 C GLU 381 27.979 25.396 66.101 1.00 0.00 C ATOM 2776 O GLU 381 29.094 25.081 65.790 1.00 0.00 O ATOM 2777 CB GLU 381 26.315 27.156 66.733 1.00 0.00 C ATOM 2778 CG GLU 381 26.691 27.185 68.207 1.00 0.00 C ATOM 2779 CD GLU 381 25.518 27.574 69.062 1.00 0.00 C ATOM 2780 OE1 GLU 381 24.476 27.848 68.519 1.00 0.00 O ATOM 2781 OE2 GLU 381 25.629 27.491 70.263 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 95.39 38.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 114.94 18.2 22 100.0 22 ARMSMC SURFACE . . . . . . . . 96.68 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 88.65 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.35 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 91.11 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 73.61 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 94.21 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 33.76 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.36 59.1 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 65.88 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 65.13 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 68.70 60.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 52.06 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 31.94 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 31.59 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 6.23 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 31.94 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.86 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.86 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.86 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.47 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.47 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3056 CRMSCA SECONDARY STRUCTURE . . 8.28 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.72 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.08 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.56 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.44 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.78 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.25 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.64 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.80 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.30 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.94 119 99.2 120 CRMSSC BURIED . . . . . . . . 7.07 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.63 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 8.83 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.94 223 99.6 224 CRMSALL BURIED . . . . . . . . 8.02 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.967 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 7.828 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 9.155 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.991 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.030 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 7.930 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 9.194 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 8.113 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.702 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 10.829 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.846 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.010 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 7.037 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.850 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 8.346 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 10.113 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 7.894 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 19 31 31 DISTCA CA (P) 0.00 0.00 0.00 9.68 61.29 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.31 7.23 DISTCA ALL (N) 0 0 2 19 144 253 254 DISTALL ALL (P) 0.00 0.00 0.79 7.48 56.69 254 DISTALL ALL (RMS) 0.00 0.00 2.29 4.16 7.37 DISTALL END of the results output