####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS147_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS147_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 351 - 370 4.97 11.01 LCS_AVERAGE: 56.09 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 351 - 357 1.03 11.71 LONGEST_CONTINUOUS_SEGMENT: 7 361 - 367 1.96 14.52 LONGEST_CONTINUOUS_SEGMENT: 7 362 - 368 1.65 14.32 LCS_AVERAGE: 19.15 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.85 11.36 LCS_AVERAGE: 14.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 7 20 5 6 8 9 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT A 352 A 352 6 7 20 5 6 8 9 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT E 353 E 353 6 7 20 5 6 8 9 9 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT E 354 E 354 6 7 20 5 6 8 9 9 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT L 355 L 355 6 7 20 5 6 8 9 9 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT G 356 G 356 6 7 20 4 4 8 9 9 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT N 357 N 357 5 7 20 4 4 8 8 9 10 11 12 14 18 19 20 21 22 23 24 26 30 31 31 LCS_GDT I 358 I 358 4 5 20 4 4 4 4 5 11 13 16 17 18 19 20 21 22 23 24 26 30 31 31 LCS_GDT I 359 I 359 4 5 20 4 4 6 7 8 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT V 360 V 360 3 4 20 3 3 4 7 9 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT A 361 A 361 3 7 20 0 3 4 4 7 7 8 11 12 13 18 19 21 22 23 24 27 30 31 31 LCS_GDT W 362 W 362 3 7 20 3 3 4 6 7 7 9 11 12 13 14 17 21 22 23 24 27 30 31 31 LCS_GDT N 363 N 363 5 7 20 3 5 5 6 7 7 10 11 12 13 14 19 21 22 23 24 27 30 31 31 LCS_GDT P 364 P 364 5 7 20 3 5 5 6 7 7 8 11 12 13 14 19 21 22 23 24 27 30 31 31 LCS_GDT N 365 N 365 5 7 20 3 5 5 6 7 7 8 11 12 13 14 17 21 22 23 24 27 30 31 31 LCS_GDT L 366 L 366 5 7 20 3 5 5 6 7 7 8 11 12 12 14 17 21 22 23 24 26 30 31 31 LCS_GDT W 367 W 367 5 7 20 3 5 5 6 7 7 7 11 12 13 14 17 21 22 23 24 27 30 31 31 LCS_GDT K 368 K 368 4 7 20 3 3 4 6 7 7 8 11 12 13 14 17 21 22 23 24 26 29 31 31 LCS_GDT K 369 K 369 4 5 20 3 3 4 4 5 5 7 7 10 13 14 17 21 22 23 24 27 30 31 31 LCS_GDT G 370 G 370 4 5 20 3 3 4 4 5 5 8 11 12 13 14 17 21 22 23 24 27 30 31 31 LCS_GDT T 371 T 371 4 5 19 1 4 4 4 5 6 7 9 11 14 15 20 21 22 23 24 27 30 31 31 LCS_GDT N 372 N 372 4 5 12 3 4 6 9 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT G 373 G 373 4 5 12 4 4 5 5 5 7 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT Y 374 Y 374 4 5 12 4 4 5 7 9 10 14 16 17 18 19 20 21 22 23 24 27 30 31 31 LCS_GDT P 375 P 375 4 5 12 4 4 5 5 5 6 8 9 13 14 19 20 21 22 23 24 27 30 31 31 LCS_GDT I 376 I 376 4 5 12 4 4 6 7 9 10 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT F 377 F 377 4 5 12 4 4 7 7 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT Q 378 Q 378 4 5 12 4 4 4 5 6 7 10 13 15 17 19 20 21 21 23 24 27 30 31 31 LCS_GDT W 379 W 379 4 5 12 4 4 7 7 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT S 380 S 380 4 5 12 4 6 8 9 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_GDT E 381 E 381 3 5 12 4 4 6 9 9 11 14 16 17 18 19 20 21 21 23 24 27 30 31 31 LCS_AVERAGE LCS_A: 29.86 ( 14.36 19.15 56.09 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 8 9 9 11 14 16 17 18 19 20 21 22 23 24 27 30 31 31 GDT PERCENT_AT 16.13 19.35 25.81 29.03 29.03 35.48 45.16 51.61 54.84 58.06 61.29 64.52 67.74 70.97 74.19 77.42 87.10 96.77 100.00 100.00 GDT RMS_LOCAL 0.24 0.72 1.00 1.49 1.18 2.10 2.58 2.82 2.92 3.15 3.31 3.53 3.75 5.64 5.78 5.42 6.23 6.76 6.90 6.90 GDT RMS_ALL_AT 10.24 11.51 12.00 10.97 12.02 9.60 9.43 9.30 9.50 9.80 9.77 9.59 9.41 9.03 8.93 7.31 7.03 6.92 6.90 6.90 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 1.331 0 0.626 0.921 4.429 71.905 64.921 LGA A 352 A 352 2.250 0 0.041 0.060 3.268 73.095 68.476 LGA E 353 E 353 1.615 0 0.126 0.754 2.748 77.143 73.069 LGA E 354 E 354 1.944 0 0.207 1.086 3.634 65.595 66.931 LGA L 355 L 355 1.779 0 0.081 0.298 5.058 71.071 56.250 LGA G 356 G 356 2.995 0 0.077 0.077 4.874 49.643 49.643 LGA N 357 N 357 5.973 0 0.148 1.084 11.693 31.786 16.905 LGA I 358 I 358 3.529 0 0.604 1.631 9.898 52.619 33.869 LGA I 359 I 359 3.461 0 0.594 1.548 10.393 59.167 34.048 LGA V 360 V 360 2.596 0 0.637 0.911 6.471 43.333 41.156 LGA A 361 A 361 8.819 0 0.629 0.566 12.774 4.048 3.238 LGA W 362 W 362 14.249 0 0.645 1.108 16.207 0.000 0.068 LGA N 363 N 363 16.826 0 0.366 1.131 18.922 0.000 0.000 LGA P 364 P 364 16.851 0 0.732 0.628 17.956 0.000 0.000 LGA N 365 N 365 21.644 0 0.098 0.718 25.550 0.000 0.000 LGA L 366 L 366 18.671 0 0.087 1.047 19.288 0.000 0.000 LGA W 367 W 367 15.823 0 0.546 0.562 17.785 0.000 0.000 LGA K 368 K 368 16.207 0 0.619 0.530 18.927 0.000 0.000 LGA K 369 K 369 12.374 0 0.680 0.999 14.872 0.000 0.000 LGA G 370 G 370 11.099 0 0.499 0.499 11.099 2.500 2.500 LGA T 371 T 371 7.016 0 0.683 1.058 10.789 19.405 11.361 LGA N 372 N 372 1.456 0 0.726 1.309 6.078 67.500 50.238 LGA G 373 G 373 4.396 0 0.551 0.551 6.113 37.143 37.143 LGA Y 374 Y 374 3.150 0 0.106 1.612 13.538 55.476 24.484 LGA P 375 P 375 5.158 0 0.607 0.713 7.693 26.548 20.068 LGA I 376 I 376 3.179 0 0.597 1.504 7.688 59.643 39.583 LGA F 377 F 377 3.648 0 0.627 1.236 6.742 45.595 28.788 LGA Q 378 Q 378 6.520 0 0.037 0.863 11.338 23.095 11.587 LGA W 379 W 379 2.629 0 0.271 1.297 5.405 65.833 44.456 LGA S 380 S 380 2.914 0 0.119 0.184 4.235 54.167 48.492 LGA E 381 E 381 4.926 0 0.361 1.143 8.695 25.833 21.143 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 6.904 6.871 7.732 34.908 27.368 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 16 2.81 44.355 38.898 0.549 LGA_LOCAL RMSD: 2.814 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.434 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 6.904 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.995404 * X + 0.094606 * Y + 0.014843 * Z + 20.113552 Y_new = 0.084602 * X + 0.796149 * Y + 0.599158 * Z + -23.072380 Z_new = 0.044866 * X + 0.597660 * Y + -0.800493 * Z + 20.132685 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.056803 -0.044882 2.500262 [DEG: 175.1419 -2.5715 143.2545 ] ZXZ: 3.116825 2.498914 0.074930 [DEG: 178.5809 143.1772 4.2932 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS147_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS147_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 16 2.81 38.898 6.90 REMARK ---------------------------------------------------------- MOLECULE T0537TS147_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2qy1_A 1pe9_A ATOM 2529 N SER 351 2.574 12.890 52.258 1.00 5.70 N ATOM 2530 CA SER 351 3.477 13.368 51.248 1.00 5.70 C ATOM 2531 CB SER 351 2.759 14.163 50.146 1.00 5.70 C ATOM 2532 OG SER 351 1.854 13.319 49.450 1.00 5.70 O ATOM 2533 C SER 351 4.482 14.285 51.866 1.00 5.70 C ATOM 2534 O SER 351 5.631 14.353 51.433 1.00 5.70 O ATOM 2535 N ALA 352 4.052 15.040 52.885 1.00 4.17 N ATOM 2536 CA ALA 352 4.879 15.981 53.573 1.00 4.17 C ATOM 2537 CB ALA 352 4.035 16.653 54.652 1.00 4.17 C ATOM 2538 C ALA 352 6.005 15.242 54.239 1.00 4.17 C ATOM 2539 O ALA 352 7.168 15.637 54.169 1.00 4.17 O ATOM 2540 N GLU 353 5.667 14.133 54.913 1.00 4.83 N ATOM 2541 CA GLU 353 6.603 13.285 55.587 1.00 4.83 C ATOM 2542 CB GLU 353 5.918 12.225 56.473 1.00 4.83 C ATOM 2543 CG GLU 353 5.174 12.822 57.671 1.00 4.83 C ATOM 2544 CD GLU 353 4.489 11.693 58.429 1.00 4.83 C ATOM 2545 OE1 GLU 353 4.804 10.507 58.136 1.00 4.83 O ATOM 2546 OE2 GLU 353 3.641 12.002 59.308 1.00 4.83 O ATOM 2547 C GLU 353 7.412 12.549 54.571 1.00 4.83 C ATOM 2548 O GLU 353 8.491 12.092 54.893 1.00 4.83 O ATOM 2549 N GLU 354 6.883 12.315 53.360 1.00 4.72 N ATOM 2550 CA GLU 354 7.536 11.618 52.275 1.00 4.72 C ATOM 2551 CB GLU 354 6.558 11.116 51.198 1.00 4.72 C ATOM 2552 CG GLU 354 5.624 10.011 51.696 1.00 4.72 C ATOM 2553 CD GLU 354 6.476 8.850 52.189 1.00 4.72 C ATOM 2554 OE1 GLU 354 7.453 8.476 51.487 1.00 4.72 O ATOM 2555 OE2 GLU 354 6.152 8.321 53.285 1.00 4.72 O ATOM 2556 C GLU 354 8.578 12.462 51.574 1.00 4.72 C ATOM 2557 O GLU 354 9.238 11.993 50.657 1.00 4.72 O ATOM 2558 N LEU 355 8.654 13.766 51.854 1.00 4.21 N ATOM 2559 CA LEU 355 9.574 14.718 51.267 1.00 4.21 C ATOM 2560 CB LEU 355 9.283 16.132 51.774 1.00 4.21 C ATOM 2561 CG LEU 355 8.337 16.968 50.902 1.00 4.21 C ATOM 2562 CD1 LEU 355 7.755 18.153 51.683 1.00 4.21 C ATOM 2563 CD2 LEU 355 9.119 17.516 49.698 1.00 4.21 C ATOM 2564 C LEU 355 11.044 14.506 51.553 1.00 4.21 C ATOM 2565 O LEU 355 11.894 14.908 50.773 1.00 4.21 O ATOM 2566 N GLY 356 11.436 13.978 52.708 1.00 3.15 N ATOM 2567 CA GLY 356 12.825 13.826 53.087 1.00 3.15 C ATOM 2568 C GLY 356 13.714 12.821 52.372 1.00 3.15 C ATOM 2569 O GLY 356 14.732 13.226 51.840 1.00 3.15 O ATOM 2570 N ASN 357 13.404 11.510 52.281 1.00 3.05 N ATOM 2571 CA ASN 357 14.350 10.535 51.781 1.00 3.05 C ATOM 2572 CB ASN 357 14.959 10.809 50.386 1.00 3.05 C ATOM 2573 CG ASN 357 14.150 10.085 49.321 1.00 3.05 C ATOM 2574 OD1 ASN 357 14.023 10.528 48.181 1.00 3.05 O ATOM 2575 ND2 ASN 357 13.562 8.924 49.714 1.00 3.05 N ATOM 2576 C ASN 357 15.518 10.419 52.706 1.00 3.05 C ATOM 2577 O ASN 357 15.660 9.450 53.447 1.00 3.05 O ATOM 2578 N ILE 358 16.461 11.368 52.595 1.00 3.24 N ATOM 2579 CA ILE 358 17.533 11.403 53.523 1.00 3.24 C ATOM 2580 CB ILE 358 18.877 11.786 52.919 1.00 3.24 C ATOM 2581 CG2 ILE 358 19.222 10.692 51.898 1.00 3.24 C ATOM 2582 CG1 ILE 358 18.933 13.195 52.307 1.00 3.24 C ATOM 2583 CD1 ILE 358 20.339 13.776 52.323 1.00 3.24 C ATOM 2584 C ILE 358 17.041 12.413 54.516 1.00 3.24 C ATOM 2585 O ILE 358 17.151 13.603 54.280 1.00 3.24 O ATOM 2586 N ILE 359 16.506 11.950 55.669 1.00 3.11 N ATOM 2587 CA ILE 359 15.784 12.736 56.655 1.00 3.11 C ATOM 2588 CB ILE 359 15.879 12.268 58.078 1.00 3.11 C ATOM 2589 CG2 ILE 359 15.094 10.975 58.309 1.00 3.11 C ATOM 2590 CG1 ILE 359 17.346 12.230 58.502 1.00 3.11 C ATOM 2591 CD1 ILE 359 17.508 12.215 60.016 1.00 3.11 C ATOM 2592 C ILE 359 16.223 14.111 56.740 1.00 3.11 C ATOM 2593 O ILE 359 17.409 14.296 56.675 1.00 3.11 O ATOM 2594 N VAL 360 15.309 15.085 56.876 1.00 2.98 N ATOM 2595 CA VAL 360 15.629 16.483 56.835 1.00 2.98 C ATOM 2596 CB VAL 360 15.288 16.824 55.403 1.00 2.98 C ATOM 2597 CG1 VAL 360 13.861 16.351 55.100 1.00 2.98 C ATOM 2598 CG2 VAL 360 15.656 18.233 55.006 1.00 2.98 C ATOM 2599 C VAL 360 14.843 17.105 57.978 1.00 2.98 C ATOM 2600 O VAL 360 13.742 16.672 58.309 1.00 2.98 O ATOM 2601 N ALA 361 15.413 18.131 58.642 1.00 2.72 N ATOM 2602 CA ALA 361 14.925 18.646 59.898 1.00 2.72 C ATOM 2603 CB ALA 361 16.078 19.196 60.754 1.00 2.72 C ATOM 2604 C ALA 361 13.957 19.766 59.727 1.00 2.72 C ATOM 2605 O ALA 361 14.292 20.798 59.169 1.00 2.72 O ATOM 2606 N TRP 362 12.733 19.581 60.260 1.00 2.91 N ATOM 2607 CA TRP 362 11.643 20.521 60.316 1.00 2.91 C ATOM 2608 CB TRP 362 10.276 19.917 59.975 1.00 2.91 C ATOM 2609 CG TRP 362 9.919 19.771 58.525 1.00 2.91 C ATOM 2610 CD2 TRP 362 10.830 19.395 57.483 1.00 2.91 C ATOM 2611 CD1 TRP 362 8.724 20.005 57.926 1.00 2.91 C ATOM 2612 NE1 TRP 362 8.825 19.749 56.590 1.00 2.91 N ATOM 2613 CE2 TRP 362 10.111 19.387 56.294 1.00 2.91 C ATOM 2614 CE3 TRP 362 12.149 19.069 57.518 1.00 2.91 C ATOM 2615 CZ2 TRP 362 10.699 19.053 55.111 1.00 2.91 C ATOM 2616 CZ3 TRP 362 12.737 18.744 56.327 1.00 2.91 C ATOM 2617 CH2 TRP 362 12.033 18.733 55.141 1.00 2.91 H ATOM 2618 C TRP 362 11.465 20.827 61.758 1.00 2.91 C ATOM 2619 O TRP 362 12.014 20.143 62.619 1.00 2.91 O ATOM 2620 N ASN 363 10.658 21.856 62.058 1.00 4.19 N ATOM 2621 CA ASN 363 10.449 22.207 63.426 1.00 4.19 C ATOM 2622 CB ASN 363 10.653 23.703 63.715 1.00 4.19 C ATOM 2623 CG ASN 363 12.126 24.044 63.510 1.00 4.19 C ATOM 2624 OD1 ASN 363 12.983 23.165 63.418 1.00 4.19 O ATOM 2625 ND2 ASN 363 12.437 25.366 63.450 1.00 4.19 N ATOM 2626 C ASN 363 9.037 21.877 63.737 1.00 4.19 C ATOM 2627 O ASN 363 8.307 21.319 62.919 1.00 4.19 O ATOM 2628 N PRO 364 8.660 22.167 64.940 1.00 4.14 N ATOM 2629 CA PRO 364 7.298 21.958 65.307 1.00 4.14 C ATOM 2630 CD PRO 364 9.561 22.036 66.070 1.00 4.14 C ATOM 2631 CB PRO 364 7.245 22.141 66.819 1.00 4.14 C ATOM 2632 CG PRO 364 8.656 21.712 67.271 1.00 4.14 C ATOM 2633 C PRO 364 6.517 22.946 64.509 1.00 4.14 C ATOM 2634 O PRO 364 7.053 24.002 64.178 1.00 4.14 O ATOM 2635 N ASN 365 5.252 22.614 64.213 1.00 4.63 N ATOM 2636 CA ASN 365 4.358 23.360 63.377 1.00 4.63 C ATOM 2637 CB ASN 365 4.503 24.887 63.528 1.00 4.63 C ATOM 2638 CG ASN 365 3.824 25.326 64.817 1.00 4.63 C ATOM 2639 OD1 ASN 365 2.869 26.101 64.795 1.00 4.63 O ATOM 2640 ND2 ASN 365 4.325 24.820 65.974 1.00 4.63 N ATOM 2641 C ASN 365 4.619 23.029 61.932 1.00 4.63 C ATOM 2642 O ASN 365 3.688 23.058 61.128 1.00 4.63 O ATOM 2643 N LEU 366 5.868 22.672 61.557 1.00 3.13 N ATOM 2644 CA LEU 366 6.121 22.213 60.210 1.00 3.13 C ATOM 2645 CB LEU 366 7.589 21.986 59.790 1.00 3.13 C ATOM 2646 CG LEU 366 8.401 23.192 59.298 1.00 3.13 C ATOM 2647 CD1 LEU 366 8.758 24.139 60.442 1.00 3.13 C ATOM 2648 CD2 LEU 366 9.628 22.740 58.487 1.00 3.13 C ATOM 2649 C LEU 366 5.556 20.848 60.062 1.00 3.13 C ATOM 2650 O LEU 366 5.106 20.466 58.983 1.00 3.13 O ATOM 2651 N TRP 367 5.610 20.061 61.149 1.00 3.62 N ATOM 2652 CA TRP 367 5.185 18.696 61.074 1.00 3.62 C ATOM 2653 CB TRP 367 5.043 18.053 62.456 1.00 3.62 C ATOM 2654 CG TRP 367 6.299 17.731 63.212 1.00 3.62 C ATOM 2655 CD2 TRP 367 7.017 16.519 62.986 1.00 3.62 C ATOM 2656 CD1 TRP 367 6.929 18.381 64.232 1.00 3.62 C ATOM 2657 NE1 TRP 367 7.978 17.620 64.688 1.00 3.62 N ATOM 2658 CE2 TRP 367 8.045 16.473 63.925 1.00 3.62 C ATOM 2659 CE3 TRP 367 6.803 15.513 62.092 1.00 3.62 C ATOM 2660 CZ2 TRP 367 8.876 15.398 63.993 1.00 3.62 C ATOM 2661 CZ3 TRP 367 7.679 14.459 62.131 1.00 3.62 C ATOM 2662 CH2 TRP 367 8.693 14.402 63.062 1.00 3.62 H ATOM 2663 C TRP 367 3.779 18.672 60.571 1.00 3.62 C ATOM 2664 O TRP 367 3.461 17.984 59.604 1.00 3.62 O ATOM 2665 N LYS 368 2.904 19.428 61.252 1.00 4.21 N ATOM 2666 CA LYS 368 1.500 19.485 60.962 1.00 4.21 C ATOM 2667 CB LYS 368 0.717 20.218 62.065 1.00 4.21 C ATOM 2668 CG LYS 368 1.208 21.643 62.340 1.00 4.21 C ATOM 2669 CD LYS 368 0.310 22.421 63.303 1.00 4.21 C ATOM 2670 CE LYS 368 0.844 23.811 63.654 1.00 4.21 C ATOM 2671 NZ LYS 368 -0.086 24.488 64.588 1.00 4.21 N ATOM 2672 C LYS 368 1.214 20.169 59.653 1.00 4.21 C ATOM 2673 O LYS 368 0.326 19.750 58.911 1.00 4.21 O ATOM 2674 N LYS 369 1.963 21.243 59.342 1.00 5.80 N ATOM 2675 CA LYS 369 1.733 22.105 58.208 1.00 5.80 C ATOM 2676 CB LYS 369 2.523 23.426 58.254 1.00 5.80 C ATOM 2677 CG LYS 369 1.975 24.419 59.283 1.00 5.80 C ATOM 2678 CD LYS 369 2.790 25.709 59.392 1.00 5.80 C ATOM 2679 CE LYS 369 2.490 26.691 58.254 1.00 5.80 C ATOM 2680 NZ LYS 369 3.347 27.894 58.354 1.00 5.80 N ATOM 2681 C LYS 369 2.002 21.454 56.881 1.00 5.80 C ATOM 2682 O LYS 369 1.622 21.982 55.840 1.00 5.80 O ATOM 2683 N GLY 370 2.745 20.345 56.882 1.00 5.77 N ATOM 2684 CA GLY 370 3.131 19.580 55.746 1.00 5.77 C ATOM 2685 C GLY 370 4.614 19.664 55.751 1.00 5.77 C ATOM 2686 O GLY 370 5.288 18.669 55.943 1.00 5.77 O ATOM 2687 N THR 371 5.182 20.864 55.609 1.00 4.80 N ATOM 2688 CA THR 371 6.604 21.010 55.571 1.00 4.80 C ATOM 2689 CB THR 371 7.238 20.358 54.340 1.00 4.80 C ATOM 2690 OG1 THR 371 7.266 18.941 54.390 1.00 4.80 O ATOM 2691 CG2 THR 371 8.643 20.885 54.073 1.00 4.80 C ATOM 2692 C THR 371 6.858 22.463 55.371 1.00 4.80 C ATOM 2693 O THR 371 6.049 23.156 54.756 1.00 4.80 O ATOM 2694 N ASN 372 8.004 22.953 55.874 1.00 3.74 N ATOM 2695 CA ASN 372 8.424 24.296 55.602 1.00 3.74 C ATOM 2696 CB ASN 372 8.748 25.122 56.862 1.00 3.74 C ATOM 2697 CG ASN 372 7.444 25.438 57.589 1.00 3.74 C ATOM 2698 OD1 ASN 372 7.455 25.920 58.720 1.00 3.74 O ATOM 2699 ND2 ASN 372 6.291 25.159 56.924 1.00 3.74 N ATOM 2700 C ASN 372 9.692 24.139 54.811 1.00 3.74 C ATOM 2701 O ASN 372 10.191 23.030 54.672 1.00 3.74 O ATOM 2702 N GLY 373 10.244 25.216 54.224 1.00 3.49 N ATOM 2703 CA GLY 373 11.470 25.064 53.483 1.00 3.49 C ATOM 2704 C GLY 373 12.539 24.779 54.465 1.00 3.49 C ATOM 2705 O GLY 373 13.158 25.700 54.959 1.00 3.49 O ATOM 2706 N TYR 374 12.960 23.511 54.540 1.00 3.83 N ATOM 2707 CA TYR 374 13.597 22.876 55.649 1.00 3.83 C ATOM 2708 CB TYR 374 13.617 21.381 55.392 1.00 3.83 C ATOM 2709 CG TYR 374 14.988 21.026 55.573 1.00 3.83 C ATOM 2710 CD1 TYR 374 15.731 21.173 54.465 1.00 3.83 C ATOM 2711 CD2 TYR 374 15.515 20.567 56.736 1.00 3.83 C ATOM 2712 CE1 TYR 374 17.040 20.897 54.500 1.00 3.83 C ATOM 2713 CE2 TYR 374 16.848 20.300 56.708 1.00 3.83 C ATOM 2714 CZ TYR 374 17.631 20.476 55.596 1.00 3.83 C ATOM 2715 OH TYR 374 19.016 20.293 55.401 1.00 3.83 H ATOM 2716 C TYR 374 14.834 23.478 56.253 1.00 3.83 C ATOM 2717 O TYR 374 15.710 24.081 55.640 1.00 3.83 O ATOM 2718 N PRO 375 14.779 23.367 57.569 1.00 3.69 N ATOM 2719 CA PRO 375 15.741 23.990 58.435 1.00 3.69 C ATOM 2720 CD PRO 375 13.476 23.301 58.213 1.00 3.69 C ATOM 2721 CB PRO 375 15.243 23.733 59.852 1.00 3.69 C ATOM 2722 CG PRO 375 13.713 23.741 59.674 1.00 3.69 C ATOM 2723 C PRO 375 17.182 23.759 58.204 1.00 3.69 C ATOM 2724 O PRO 375 17.966 24.696 58.278 1.00 3.69 O ATOM 2725 N ILE 376 17.618 22.529 58.060 1.00 3.24 N ATOM 2726 CA ILE 376 18.992 22.295 57.821 1.00 3.24 C ATOM 2727 CB ILE 376 19.359 20.871 58.089 1.00 3.24 C ATOM 2728 CG2 ILE 376 20.744 20.492 57.570 1.00 3.24 C ATOM 2729 CG1 ILE 376 19.211 20.783 59.610 1.00 3.24 C ATOM 2730 CD1 ILE 376 19.476 19.464 60.306 1.00 3.24 C ATOM 2731 C ILE 376 19.365 22.957 56.521 1.00 3.24 C ATOM 2732 O ILE 376 20.482 23.420 56.383 1.00 3.24 O ATOM 2733 N PHE 377 18.482 23.093 55.516 1.00 3.92 N ATOM 2734 CA PHE 377 18.941 23.775 54.336 1.00 3.92 C ATOM 2735 CB PHE 377 18.017 23.941 53.098 1.00 3.92 C ATOM 2736 CG PHE 377 17.931 22.643 52.383 1.00 3.92 C ATOM 2737 CD1 PHE 377 19.029 21.830 52.276 1.00 3.92 C ATOM 2738 CD2 PHE 377 16.733 22.175 51.912 1.00 3.92 C ATOM 2739 CE1 PHE 377 18.942 20.609 51.657 1.00 3.92 C ATOM 2740 CE2 PHE 377 16.617 20.961 51.292 1.00 3.92 C ATOM 2741 CZ PHE 377 17.736 20.186 51.170 1.00 3.92 C ATOM 2742 C PHE 377 19.273 25.170 54.720 1.00 3.92 C ATOM 2743 O PHE 377 20.187 25.745 54.144 1.00 3.92 O ATOM 2744 N GLN 378 18.529 25.771 55.669 1.00 3.73 N ATOM 2745 CA GLN 378 18.892 27.111 56.026 1.00 3.73 C ATOM 2746 CB GLN 378 17.945 27.884 56.968 1.00 3.73 C ATOM 2747 CG GLN 378 17.970 27.418 58.425 1.00 3.73 C ATOM 2748 CD GLN 378 17.521 28.579 59.297 1.00 3.73 C ATOM 2749 OE1 GLN 378 18.134 29.644 59.255 1.00 3.73 O ATOM 2750 NE2 GLN 378 16.446 28.380 60.106 1.00 3.73 N ATOM 2751 C GLN 378 20.227 27.132 56.732 1.00 3.73 C ATOM 2752 O GLN 378 20.981 28.084 56.543 1.00 3.73 O ATOM 2753 N TRP 379 20.564 26.150 57.609 1.00 4.05 N ATOM 2754 CA TRP 379 21.852 26.321 58.246 1.00 4.05 C ATOM 2755 CB TRP 379 22.295 25.405 59.362 1.00 4.05 C ATOM 2756 CG TRP 379 23.733 25.804 59.606 1.00 4.05 C ATOM 2757 CD2 TRP 379 24.935 25.108 59.192 1.00 4.05 C ATOM 2758 CD1 TRP 379 24.156 26.955 60.208 1.00 4.05 C ATOM 2759 NE1 TRP 379 25.529 27.001 60.233 1.00 4.05 N ATOM 2760 CE2 TRP 379 26.023 25.879 59.606 1.00 4.05 C ATOM 2761 CE3 TRP 379 25.136 23.925 58.543 1.00 4.05 C ATOM 2762 CZ2 TRP 379 27.308 25.473 59.385 1.00 4.05 C ATOM 2763 CZ3 TRP 379 26.432 23.529 58.301 1.00 4.05 C ATOM 2764 CH2 TRP 379 27.501 24.288 58.717 1.00 4.05 H ATOM 2765 C TRP 379 22.980 26.210 57.278 1.00 4.05 C ATOM 2766 O TRP 379 23.852 27.076 57.230 1.00 4.05 O ATOM 2767 N SER 380 23.026 25.135 56.463 1.00 3.57 N ATOM 2768 CA SER 380 23.939 25.242 55.375 1.00 3.57 C ATOM 2769 CB SER 380 24.040 24.045 54.418 1.00 3.57 C ATOM 2770 OG SER 380 24.945 23.088 54.946 1.00 3.57 O ATOM 2771 C SER 380 23.448 26.427 54.611 1.00 3.57 C ATOM 2772 O SER 380 22.325 26.885 54.775 1.00 3.57 O ATOM 2773 N GLU 381 24.296 27.033 53.794 1.00 4.23 N ATOM 2774 CA GLU 381 23.845 28.219 53.145 1.00 4.23 C ATOM 2775 CB GLU 381 25.020 29.168 52.859 1.00 4.23 C ATOM 2776 CG GLU 381 24.637 30.471 52.163 1.00 4.23 C ATOM 2777 CD GLU 381 25.905 31.301 52.021 1.00 4.23 C ATOM 2778 OE1 GLU 381 27.010 30.724 52.199 1.00 4.23 O ATOM 2779 OE2 GLU 381 25.785 32.522 51.737 1.00 4.23 O ATOM 2780 C GLU 381 23.261 27.794 51.809 1.00 4.23 C ATOM 2781 O GLU 381 22.219 27.084 51.801 1.00 4.23 O ATOM 2782 OXT GLU 381 23.860 28.180 50.770 1.00 4.23 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 97.97 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 84.55 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 93.70 38.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 116.98 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.69 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 90.47 52.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 86.75 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 90.59 52.2 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 99.71 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.83 72.7 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 63.68 81.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 94.30 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 79.50 70.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 6.73 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.14 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 60.75 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 32.56 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 67.14 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.51 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.51 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.51 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.90 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.90 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2227 CRMSCA SECONDARY STRUCTURE . . 6.22 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.04 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.14 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.03 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.42 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.17 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.17 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.51 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 8.32 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.27 41 100.0 41 CRMSSC SURFACE . . . . . . . . 8.64 120 100.0 120 CRMSSC BURIED . . . . . . . . 6.71 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.75 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.24 85 100.0 85 CRMSALL SURFACE . . . . . . . . 7.92 224 100.0 224 CRMSALL BURIED . . . . . . . . 6.34 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.920 0.266 0.145 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 2.949 0.299 0.184 11 100.0 11 ERRCA SURFACE . . . . . . . . 3.069 0.276 0.152 26 100.0 26 ERRCA BURIED . . . . . . . . 2.144 0.217 0.109 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.055 0.274 0.149 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 3.114 0.307 0.186 54 100.0 54 ERRMC SURFACE . . . . . . . . 3.182 0.280 0.154 129 100.0 129 ERRMC BURIED . . . . . . . . 2.341 0.240 0.120 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.450 0.352 0.187 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 4.267 0.343 0.184 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 4.734 0.400 0.234 41 100.0 41 ERRSC SURFACE . . . . . . . . 4.540 0.354 0.189 120 100.0 120 ERRSC BURIED . . . . . . . . 3.371 0.334 0.167 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.706 0.311 0.167 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 3.791 0.346 0.207 85 100.0 85 ERRALL SURFACE . . . . . . . . 3.850 0.317 0.172 224 100.0 224 ERRALL BURIED . . . . . . . . 2.629 0.266 0.133 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 7 28 31 31 DISTCA CA (P) 0.00 3.23 3.23 22.58 90.32 31 DISTCA CA (RMS) 0.00 1.80 1.80 3.97 6.48 DISTCA ALL (N) 0 3 10 39 212 254 254 DISTALL ALL (P) 0.00 1.18 3.94 15.35 83.46 254 DISTALL ALL (RMS) 0.00 1.68 2.23 3.84 6.86 DISTALL END of the results output