####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS142_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS142_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 361 - 374 4.85 14.51 LCS_AVERAGE: 40.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 373 - 379 1.98 17.08 LCS_AVERAGE: 16.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.83 16.54 LCS_AVERAGE: 12.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 10 3 3 3 4 4 4 4 5 6 7 8 10 12 14 14 15 17 19 19 20 LCS_GDT A 352 A 352 3 4 10 3 3 3 4 4 4 4 5 5 7 8 10 12 14 14 16 18 19 19 20 LCS_GDT E 353 E 353 3 4 10 3 3 3 4 4 4 4 5 7 8 9 10 12 14 15 16 18 19 19 20 LCS_GDT E 354 E 354 3 4 10 0 3 3 4 4 4 5 5 7 8 9 10 12 14 15 16 18 19 19 22 LCS_GDT L 355 L 355 3 4 11 0 3 3 3 3 4 5 5 8 8 9 10 12 14 15 16 18 19 19 22 LCS_GDT G 356 G 356 3 4 11 3 3 3 3 4 5 5 5 8 9 11 11 12 14 15 16 18 19 19 20 LCS_GDT N 357 N 357 3 4 11 3 3 3 3 4 5 5 6 8 9 11 11 13 14 15 16 18 19 20 22 LCS_GDT I 358 I 358 3 3 11 3 3 3 3 4 5 6 7 8 10 11 12 13 16 17 18 19 19 20 22 LCS_GDT I 359 I 359 3 3 13 3 3 3 3 4 6 7 8 10 10 11 12 14 16 17 18 19 19 20 22 LCS_GDT V 360 V 360 3 3 13 3 3 3 4 5 5 7 8 10 10 11 12 14 16 17 18 19 19 20 22 LCS_GDT A 361 A 361 3 3 14 3 3 3 4 5 6 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT W 362 W 362 4 5 14 3 4 5 6 6 7 9 9 9 10 11 12 14 16 17 18 19 19 20 22 LCS_GDT N 363 N 363 4 5 14 3 4 5 6 6 7 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT P 364 P 364 4 6 14 3 4 4 6 6 7 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT N 365 N 365 4 6 14 3 4 5 6 6 7 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT L 366 L 366 4 6 14 3 3 4 5 6 7 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT W 367 W 367 4 6 14 3 3 4 5 5 6 7 8 9 10 11 11 13 14 16 18 19 19 20 22 LCS_GDT K 368 K 368 4 6 14 3 4 4 5 6 7 9 9 9 11 11 12 13 16 17 18 19 19 20 22 LCS_GDT K 369 K 369 4 6 14 3 4 4 4 6 7 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT G 370 G 370 4 6 14 3 4 4 4 5 6 9 9 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT T 371 T 371 4 6 14 3 4 4 4 5 6 7 7 9 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT N 372 N 372 5 6 14 3 4 5 6 6 6 7 7 9 10 11 11 12 14 17 18 19 19 20 22 LCS_GDT G 373 G 373 5 7 14 4 4 5 6 6 6 7 8 10 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT Y 374 Y 374 5 7 14 4 4 5 6 6 6 7 8 10 11 11 12 14 16 17 18 19 19 20 22 LCS_GDT P 375 P 375 5 7 13 4 4 5 6 6 6 7 8 10 10 11 12 14 16 17 18 19 19 20 22 LCS_GDT I 376 I 376 5 7 11 4 4 5 6 6 6 7 8 9 10 11 12 13 15 17 18 19 19 20 22 LCS_GDT F 377 F 377 4 7 11 3 3 4 6 6 6 7 8 10 10 11 12 12 13 14 15 17 17 18 19 LCS_GDT Q 378 Q 378 4 7 11 3 3 4 5 6 6 7 8 10 10 11 12 12 13 13 14 17 17 17 19 LCS_GDT W 379 W 379 4 7 11 3 3 4 5 6 6 7 8 10 10 11 12 12 13 13 14 17 17 17 19 LCS_GDT S 380 S 380 3 4 11 3 3 3 3 4 5 5 5 10 10 11 12 12 13 13 14 17 17 17 17 LCS_GDT E 381 E 381 3 4 11 3 3 3 3 3 6 6 7 10 10 11 12 12 13 13 14 17 17 17 19 LCS_AVERAGE LCS_A: 22.96 ( 12.07 16.75 40.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 6 7 9 9 10 11 11 12 14 16 17 18 19 19 20 22 GDT PERCENT_AT 12.90 12.90 16.13 19.35 19.35 22.58 29.03 29.03 32.26 35.48 35.48 38.71 45.16 51.61 54.84 58.06 61.29 61.29 64.52 70.97 GDT RMS_LOCAL 0.35 0.35 0.83 1.23 1.23 1.90 2.78 2.78 3.12 4.31 3.41 3.99 4.93 5.23 5.38 5.60 5.84 5.84 6.26 7.04 GDT RMS_ALL_AT 15.59 15.59 16.54 13.19 13.19 19.14 17.83 17.83 15.05 14.31 15.05 11.65 13.49 13.56 13.58 13.72 13.44 13.44 13.14 12.66 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 33.236 0 0.493 0.733 36.708 0.000 0.000 LGA A 352 A 352 33.919 0 0.069 0.065 35.788 0.000 0.000 LGA E 353 E 353 32.254 0 0.587 0.826 36.775 0.000 0.000 LGA E 354 E 354 25.894 0 0.607 1.377 28.246 0.000 0.000 LGA L 355 L 355 21.900 0 0.646 0.945 23.328 0.000 0.000 LGA G 356 G 356 21.926 0 0.589 0.589 21.926 0.000 0.000 LGA N 357 N 357 18.231 0 0.596 1.358 19.681 0.000 0.000 LGA I 358 I 358 11.951 0 0.596 1.241 14.055 0.119 0.119 LGA I 359 I 359 9.811 0 0.600 1.599 13.662 0.357 0.179 LGA V 360 V 360 9.382 0 0.625 0.646 12.598 5.000 2.857 LGA A 361 A 361 4.089 0 0.684 0.614 6.108 47.976 48.381 LGA W 362 W 362 1.932 0 0.625 1.107 7.296 55.476 41.973 LGA N 363 N 363 2.393 0 0.182 1.397 7.484 75.119 51.429 LGA P 364 P 364 1.805 0 0.678 0.715 3.480 77.143 66.531 LGA N 365 N 365 1.682 0 0.267 1.178 7.159 72.976 49.821 LGA L 366 L 366 2.691 0 0.488 1.169 3.834 54.167 54.881 LGA W 367 W 367 6.095 0 0.109 0.325 15.966 32.619 9.660 LGA K 368 K 368 3.058 0 0.084 1.211 7.875 43.929 33.862 LGA K 369 K 369 2.922 0 0.132 0.806 13.313 62.976 32.063 LGA G 370 G 370 3.489 0 0.277 0.277 6.378 38.333 38.333 LGA T 371 T 371 9.550 0 0.670 0.959 13.360 2.619 1.497 LGA N 372 N 372 12.084 0 0.703 1.176 13.716 0.000 0.000 LGA G 373 G 373 12.213 0 0.635 0.635 12.213 0.000 0.000 LGA Y 374 Y 374 12.198 0 0.276 0.403 13.335 0.000 0.000 LGA P 375 P 375 12.547 0 0.056 0.426 13.016 0.000 0.000 LGA I 376 I 376 14.403 0 0.382 0.492 18.846 0.000 0.000 LGA F 377 F 377 17.390 0 0.035 1.119 19.720 0.000 0.000 LGA Q 378 Q 378 22.952 0 0.656 1.189 26.706 0.000 0.000 LGA W 379 W 379 26.385 0 0.682 1.007 26.736 0.000 0.000 LGA S 380 S 380 27.953 0 0.069 0.726 30.614 0.000 0.000 LGA E 381 E 381 30.934 0 0.095 0.381 33.771 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 11.017 10.993 12.433 18.349 13.922 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.78 29.839 26.076 0.312 LGA_LOCAL RMSD: 2.780 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.831 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.017 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.189551 * X + 0.607461 * Y + 0.771403 * Z + -48.455524 Y_new = 0.972621 * X + -0.008577 * Y + -0.232240 * Z + 11.007586 Z_new = -0.134460 * X + 0.794303 * Y + -0.592455 * Z + 26.109907 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.378322 0.134869 2.211655 [DEG: 78.9720 7.7274 126.7185 ] ZXZ: 1.278365 2.204899 -0.167691 [DEG: 73.2449 126.3314 -9.6080 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS142_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS142_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.78 26.076 11.02 REMARK ---------------------------------------------------------- MOLECULE T0537TS142_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1dab_A ATOM 2529 N SER 351 33.538 6.926 37.977 1.00 90.45 N ATOM 2530 CA SER 351 34.275 7.258 36.794 1.00 90.45 C ATOM 2531 CB SER 351 35.634 6.541 36.703 1.00 90.45 C ATOM 2532 OG SER 351 36.301 6.922 35.507 1.00 90.45 O ATOM 2533 C SER 351 33.529 6.886 35.547 1.00 90.45 C ATOM 2534 O SER 351 33.065 7.752 34.806 1.00 90.45 O ATOM 2535 N ALA 352 33.408 5.565 35.290 1.00 55.05 N ATOM 2536 CA ALA 352 32.873 5.098 34.038 1.00 55.05 C ATOM 2537 CB ALA 352 33.023 3.576 33.854 1.00 55.05 C ATOM 2538 C ALA 352 31.429 5.442 33.855 1.00 55.05 C ATOM 2539 O ALA 352 31.067 6.056 32.853 1.00 55.05 O ATOM 2540 N GLU 353 30.552 5.084 34.812 1.00122.42 N ATOM 2541 CA GLU 353 29.190 5.480 34.609 1.00122.42 C ATOM 2542 CB GLU 353 28.549 5.045 33.278 1.00122.42 C ATOM 2543 CG GLU 353 27.217 5.776 33.043 1.00122.42 C ATOM 2544 CD GLU 353 26.744 5.542 31.616 1.00122.42 C ATOM 2545 OE1 GLU 353 26.564 4.355 31.235 1.00122.42 O ATOM 2546 OE2 GLU 353 26.545 6.553 30.892 1.00122.42 O ATOM 2547 C GLU 353 28.339 4.983 35.722 1.00122.42 C ATOM 2548 O GLU 353 28.643 3.990 36.381 1.00122.42 O ATOM 2549 N GLU 354 27.214 5.682 35.938 1.00136.01 N ATOM 2550 CA GLU 354 26.353 5.383 37.033 1.00136.01 C ATOM 2551 CB GLU 354 26.146 6.601 37.950 1.00136.01 C ATOM 2552 CG GLU 354 25.091 6.397 39.039 1.00136.01 C ATOM 2553 CD GLU 354 23.734 6.802 38.475 1.00136.01 C ATOM 2554 OE1 GLU 354 23.691 7.275 37.308 1.00136.01 O ATOM 2555 OE2 GLU 354 22.720 6.642 39.207 1.00136.01 O ATOM 2556 C GLU 354 25.008 4.994 36.533 1.00136.01 C ATOM 2557 O GLU 354 24.542 5.450 35.490 1.00136.01 O ATOM 2558 N LEU 355 24.369 4.084 37.286 1.00160.40 N ATOM 2559 CA LEU 355 23.023 3.681 37.033 1.00160.40 C ATOM 2560 CB LEU 355 22.896 2.545 35.998 1.00160.40 C ATOM 2561 CG LEU 355 21.465 2.001 35.776 1.00160.40 C ATOM 2562 CD1 LEU 355 21.002 1.094 36.930 1.00160.40 C ATOM 2563 CD2 LEU 355 20.470 3.138 35.485 1.00160.40 C ATOM 2564 C LEU 355 22.499 3.197 38.338 1.00160.40 C ATOM 2565 O LEU 355 23.241 2.631 39.139 1.00160.40 O ATOM 2566 N GLY 356 21.208 3.439 38.618 1.00 55.58 N ATOM 2567 CA GLY 356 20.695 2.854 39.816 1.00 55.58 C ATOM 2568 C GLY 356 19.626 3.713 40.396 1.00 55.58 C ATOM 2569 O GLY 356 19.503 4.897 40.083 1.00 55.58 O ATOM 2570 N ASN 357 18.822 3.088 41.276 1.00106.32 N ATOM 2571 CA ASN 357 17.766 3.733 41.993 1.00106.32 C ATOM 2572 CB ASN 357 16.398 3.067 41.756 1.00106.32 C ATOM 2573 CG ASN 357 15.299 3.997 42.245 1.00106.32 C ATOM 2574 OD1 ASN 357 14.119 3.649 42.220 1.00106.32 O ATOM 2575 ND2 ASN 357 15.692 5.219 42.693 1.00106.32 N ATOM 2576 C ASN 357 18.116 3.520 43.428 1.00106.32 C ATOM 2577 O ASN 357 17.923 2.428 43.962 1.00106.32 O ATOM 2578 N ILE 358 18.606 4.576 44.101 1.00158.40 N ATOM 2579 CA ILE 358 19.099 4.417 45.437 1.00158.40 C ATOM 2580 CB ILE 358 20.527 4.896 45.535 1.00158.40 C ATOM 2581 CG2 ILE 358 20.521 6.390 45.176 1.00158.40 C ATOM 2582 CG1 ILE 358 21.191 4.593 46.891 1.00158.40 C ATOM 2583 CD1 ILE 358 20.707 5.481 48.033 1.00158.40 C ATOM 2584 C ILE 358 18.240 5.216 46.371 1.00158.40 C ATOM 2585 O ILE 358 17.718 6.266 46.002 1.00158.40 O ATOM 2586 N ILE 359 18.034 4.694 47.602 1.00104.43 N ATOM 2587 CA ILE 359 17.268 5.383 48.604 1.00104.43 C ATOM 2588 CB ILE 359 16.226 4.526 49.277 1.00104.43 C ATOM 2589 CG2 ILE 359 15.213 4.078 48.212 1.00104.43 C ATOM 2590 CG1 ILE 359 16.875 3.355 50.037 1.00104.43 C ATOM 2591 CD1 ILE 359 15.914 2.600 50.959 1.00104.43 C ATOM 2592 C ILE 359 18.235 5.826 49.659 1.00104.43 C ATOM 2593 O ILE 359 19.033 5.034 50.160 1.00104.43 O ATOM 2594 N VAL 360 18.205 7.124 50.017 1.00 53.41 N ATOM 2595 CA VAL 360 19.140 7.622 50.981 1.00 53.41 C ATOM 2596 CB VAL 360 19.841 8.873 50.522 1.00 53.41 C ATOM 2597 CG1 VAL 360 20.754 9.379 51.650 1.00 53.41 C ATOM 2598 CG2 VAL 360 20.577 8.576 49.204 1.00 53.41 C ATOM 2599 C VAL 360 18.394 7.982 52.224 1.00 53.41 C ATOM 2600 O VAL 360 17.360 8.645 52.169 1.00 53.41 O ATOM 2601 N ALA 361 18.901 7.530 53.390 1.00 43.07 N ATOM 2602 CA ALA 361 18.288 7.903 54.631 1.00 43.07 C ATOM 2603 CB ALA 361 18.368 6.815 55.718 1.00 43.07 C ATOM 2604 C ALA 361 19.087 9.072 55.089 1.00 43.07 C ATOM 2605 O ALA 361 20.310 8.993 55.195 1.00 43.07 O ATOM 2606 N TRP 362 18.415 10.202 55.366 1.00151.96 N ATOM 2607 CA TRP 362 19.181 11.374 55.644 1.00151.96 C ATOM 2608 CB TRP 362 18.442 12.686 55.340 1.00151.96 C ATOM 2609 CG TRP 362 19.371 13.874 55.368 1.00151.96 C ATOM 2610 CD2 TRP 362 20.020 14.382 54.189 1.00151.96 C ATOM 2611 CD1 TRP 362 19.780 14.654 56.407 1.00151.96 C ATOM 2612 NE1 TRP 362 20.662 15.610 55.956 1.00151.96 N ATOM 2613 CE2 TRP 362 20.812 15.456 54.595 1.00151.96 C ATOM 2614 CE3 TRP 362 19.961 13.983 52.889 1.00151.96 C ATOM 2615 CZ2 TRP 362 21.566 16.151 53.689 1.00151.96 C ATOM 2616 CZ3 TRP 362 20.717 14.687 51.978 1.00151.96 C ATOM 2617 CH2 TRP 362 21.503 15.749 52.372 1.00151.96 C ATOM 2618 C TRP 362 19.553 11.419 57.083 1.00151.96 C ATOM 2619 O TRP 362 18.763 11.094 57.967 1.00151.96 O ATOM 2620 N ASN 363 20.807 11.830 57.340 1.00101.12 N ATOM 2621 CA ASN 363 21.264 12.047 58.675 1.00101.12 C ATOM 2622 CB ASN 363 22.627 11.401 58.981 1.00101.12 C ATOM 2623 CG ASN 363 22.484 9.887 58.950 1.00101.12 C ATOM 2624 OD1 ASN 363 23.158 9.210 58.175 1.00101.12 O ATOM 2625 ND2 ASN 363 21.593 9.338 59.817 1.00101.12 N ATOM 2626 C ASN 363 21.513 13.512 58.713 1.00101.12 C ATOM 2627 O ASN 363 22.283 14.020 57.902 1.00101.12 O ATOM 2628 N PRO 364 20.880 14.239 59.584 1.00 90.70 N ATOM 2629 CA PRO 364 21.141 15.639 59.659 1.00 90.70 C ATOM 2630 CD PRO 364 19.696 13.835 60.318 1.00 90.70 C ATOM 2631 CB PRO 364 20.055 16.224 60.561 1.00 90.70 C ATOM 2632 CG PRO 364 19.470 15.001 61.298 1.00 90.70 C ATOM 2633 C PRO 364 22.526 15.764 60.185 1.00 90.70 C ATOM 2634 O PRO 364 22.796 15.230 61.259 1.00 90.70 O ATOM 2635 N ASN 365 23.421 16.454 59.459 1.00179.77 N ATOM 2636 CA ASN 365 24.749 16.627 59.964 1.00179.77 C ATOM 2637 CB ASN 365 25.811 15.869 59.142 1.00179.77 C ATOM 2638 CG ASN 365 25.816 16.416 57.717 1.00179.77 C ATOM 2639 OD1 ASN 365 26.748 17.106 57.304 1.00179.77 O ATOM 2640 ND2 ASN 365 24.747 16.095 56.938 1.00179.77 N ATOM 2641 C ASN 365 25.061 18.079 59.848 1.00179.77 C ATOM 2642 O ASN 365 26.206 18.462 59.609 1.00179.77 O ATOM 2643 N LEU 366 24.027 18.920 60.033 1.00141.04 N ATOM 2644 CA LEU 366 24.141 20.347 59.925 1.00141.04 C ATOM 2645 CB LEU 366 23.653 20.923 58.583 1.00141.04 C ATOM 2646 CG LEU 366 24.543 20.607 57.372 1.00141.04 C ATOM 2647 CD1 LEU 366 25.910 21.296 57.506 1.00141.04 C ATOM 2648 CD2 LEU 366 24.638 19.097 57.113 1.00141.04 C ATOM 2649 C LEU 366 23.198 20.918 60.927 1.00141.04 C ATOM 2650 O LEU 366 22.915 20.307 61.955 1.00141.04 O ATOM 2651 N TRP 367 22.713 22.146 60.637 1.00138.29 N ATOM 2652 CA TRP 367 21.717 22.782 61.453 1.00138.29 C ATOM 2653 CB TRP 367 21.264 24.182 60.994 1.00138.29 C ATOM 2654 CG TRP 367 22.252 25.321 61.058 1.00138.29 C ATOM 2655 CD2 TRP 367 22.898 25.761 62.260 1.00138.29 C ATOM 2656 CD1 TRP 367 22.706 26.129 60.057 1.00138.29 C ATOM 2657 NE1 TRP 367 23.575 27.064 60.566 1.00138.29 N ATOM 2658 CE2 TRP 367 23.707 26.844 61.920 1.00138.29 C ATOM 2659 CE3 TRP 367 22.819 25.300 63.543 1.00138.29 C ATOM 2660 CZ2 TRP 367 24.454 27.487 62.865 1.00138.29 C ATOM 2661 CZ3 TRP 367 23.577 25.948 64.491 1.00138.29 C ATOM 2662 CH2 TRP 367 24.377 27.021 64.159 1.00138.29 C ATOM 2663 C TRP 367 20.490 21.961 61.252 1.00138.29 C ATOM 2664 O TRP 367 20.402 21.204 60.286 1.00138.29 O ATOM 2665 N LYS 368 19.509 22.067 62.168 1.00155.65 N ATOM 2666 CA LYS 368 18.313 21.307 61.964 1.00155.65 C ATOM 2667 CB LYS 368 17.296 21.437 63.110 1.00155.65 C ATOM 2668 CG LYS 368 17.789 20.787 64.403 1.00155.65 C ATOM 2669 CD LYS 368 18.067 19.289 64.254 1.00155.65 C ATOM 2670 CE LYS 368 16.870 18.407 64.614 1.00155.65 C ATOM 2671 NZ LYS 368 15.687 18.812 63.825 1.00155.65 N ATOM 2672 C LYS 368 17.691 21.813 60.707 1.00155.65 C ATOM 2673 O LYS 368 17.641 23.019 60.464 1.00155.65 O ATOM 2674 N LYS 369 17.212 20.886 59.856 1.00262.14 N ATOM 2675 CA LYS 369 16.687 21.299 58.590 1.00262.14 C ATOM 2676 CB LYS 369 17.554 20.864 57.398 1.00262.14 C ATOM 2677 CG LYS 369 18.968 21.443 57.421 1.00262.14 C ATOM 2678 CD LYS 369 19.926 20.754 56.444 1.00262.14 C ATOM 2679 CE LYS 369 19.796 21.248 55.003 1.00262.14 C ATOM 2680 NZ LYS 369 20.313 22.632 54.893 1.00262.14 N ATOM 2681 C LYS 369 15.365 20.650 58.377 1.00262.14 C ATOM 2682 O LYS 369 14.893 19.855 59.189 1.00262.14 O ATOM 2683 N GLY 370 14.732 21.019 57.250 1.00 83.63 N ATOM 2684 CA GLY 370 13.477 20.472 56.848 1.00 83.63 C ATOM 2685 C GLY 370 13.785 19.473 55.785 1.00 83.63 C ATOM 2686 O GLY 370 14.587 18.562 55.982 1.00 83.63 O ATOM 2687 N THR 371 13.138 19.630 54.618 1.00 36.67 N ATOM 2688 CA THR 371 13.341 18.723 53.533 1.00 36.67 C ATOM 2689 CB THR 371 12.459 19.054 52.362 1.00 36.67 C ATOM 2690 OG1 THR 371 11.096 19.039 52.769 1.00 36.67 O ATOM 2691 CG2 THR 371 12.681 18.021 51.248 1.00 36.67 C ATOM 2692 C THR 371 14.777 18.834 53.125 1.00 36.67 C ATOM 2693 O THR 371 15.398 19.884 53.278 1.00 36.67 O ATOM 2694 N ASN 372 15.350 17.724 52.615 1.00134.86 N ATOM 2695 CA ASN 372 16.735 17.695 52.228 1.00134.86 C ATOM 2696 CB ASN 372 17.513 16.451 52.701 1.00134.86 C ATOM 2697 CG ASN 372 18.117 16.747 54.064 1.00134.86 C ATOM 2698 OD1 ASN 372 17.763 16.157 55.083 1.00134.86 O ATOM 2699 ND2 ASN 372 19.089 17.698 54.071 1.00134.86 N ATOM 2700 C ASN 372 16.850 17.723 50.744 1.00134.86 C ATOM 2701 O ASN 372 15.866 17.885 50.024 1.00134.86 O ATOM 2702 N GLY 373 18.102 17.603 50.258 1.00 64.75 N ATOM 2703 CA GLY 373 18.357 17.614 48.850 1.00 64.75 C ATOM 2704 C GLY 373 19.830 17.410 48.656 1.00 64.75 C ATOM 2705 O GLY 373 20.513 16.858 49.517 1.00 64.75 O ATOM 2706 N TYR 374 20.335 17.872 47.495 1.00198.53 N ATOM 2707 CA TYR 374 21.718 17.801 47.114 1.00198.53 C ATOM 2708 CB TYR 374 22.589 18.903 47.741 1.00198.53 C ATOM 2709 CG TYR 374 22.161 20.151 47.039 1.00198.53 C ATOM 2710 CD1 TYR 374 21.104 20.901 47.498 1.00198.53 C ATOM 2711 CD2 TYR 374 22.816 20.554 45.899 1.00198.53 C ATOM 2712 CE1 TYR 374 20.715 22.044 46.834 1.00198.53 C ATOM 2713 CE2 TYR 374 22.434 21.692 45.230 1.00198.53 C ATOM 2714 CZ TYR 374 21.382 22.441 45.699 1.00198.53 C ATOM 2715 OH TYR 374 20.985 23.609 45.014 1.00198.53 O ATOM 2716 C TYR 374 22.302 16.442 47.309 1.00198.53 C ATOM 2717 O TYR 374 23.180 16.184 48.139 1.00198.53 O ATOM 2718 N PRO 375 21.801 15.586 46.470 1.00121.21 N ATOM 2719 CA PRO 375 22.191 14.206 46.435 1.00121.21 C ATOM 2720 CD PRO 375 21.322 16.048 45.177 1.00121.21 C ATOM 2721 CB PRO 375 21.563 13.641 45.163 1.00121.21 C ATOM 2722 CG PRO 375 21.533 14.861 44.225 1.00121.21 C ATOM 2723 C PRO 375 23.675 14.129 46.376 1.00121.21 C ATOM 2724 O PRO 375 24.296 14.875 45.624 1.00121.21 O ATOM 2725 N ILE 376 24.279 13.213 47.145 1.00240.80 N ATOM 2726 CA ILE 376 25.700 13.171 47.084 1.00240.80 C ATOM 2727 CB ILE 376 26.330 12.844 48.414 1.00240.80 C ATOM 2728 CG2 ILE 376 26.081 14.033 49.357 1.00240.80 C ATOM 2729 CG1 ILE 376 25.822 11.500 48.968 1.00240.80 C ATOM 2730 CD1 ILE 376 26.601 11.003 50.186 1.00240.80 C ATOM 2731 C ILE 376 26.074 12.160 46.050 1.00240.80 C ATOM 2732 O ILE 376 26.279 10.980 46.327 1.00240.80 O ATOM 2733 N PHE 377 26.152 12.620 44.788 1.00133.75 N ATOM 2734 CA PHE 377 26.548 11.719 43.761 1.00133.75 C ATOM 2735 CB PHE 377 25.384 10.947 43.119 1.00133.75 C ATOM 2736 CG PHE 377 26.011 9.957 42.203 1.00133.75 C ATOM 2737 CD1 PHE 377 26.663 8.866 42.730 1.00133.75 C ATOM 2738 CD2 PHE 377 25.940 10.099 40.838 1.00133.75 C ATOM 2739 CE1 PHE 377 27.250 7.935 41.909 1.00133.75 C ATOM 2740 CE2 PHE 377 26.526 9.169 40.011 1.00133.75 C ATOM 2741 CZ PHE 377 27.182 8.086 40.544 1.00133.75 C ATOM 2742 C PHE 377 27.203 12.511 42.681 1.00133.75 C ATOM 2743 O PHE 377 26.820 13.647 42.404 1.00133.75 O ATOM 2744 N GLN 378 28.234 11.916 42.055 1.00 51.22 N ATOM 2745 CA GLN 378 28.898 12.563 40.968 1.00 51.22 C ATOM 2746 CB GLN 378 30.391 12.813 41.235 1.00 51.22 C ATOM 2747 CG GLN 378 31.109 13.503 40.075 1.00 51.22 C ATOM 2748 CD GLN 378 30.588 14.932 39.973 1.00 51.22 C ATOM 2749 OE1 GLN 378 31.065 15.839 40.653 1.00 51.22 O ATOM 2750 NE2 GLN 378 29.575 15.140 39.090 1.00 51.22 N ATOM 2751 C GLN 378 28.783 11.617 39.818 1.00 51.22 C ATOM 2752 O GLN 378 29.159 10.450 39.923 1.00 51.22 O ATOM 2753 N TRP 379 28.250 12.116 38.689 1.00109.32 N ATOM 2754 CA TRP 379 27.976 11.297 37.546 1.00109.32 C ATOM 2755 CB TRP 379 26.453 11.170 37.351 1.00109.32 C ATOM 2756 CG TRP 379 25.949 10.507 36.094 1.00109.32 C ATOM 2757 CD2 TRP 379 25.313 11.229 35.027 1.00109.32 C ATOM 2758 CD1 TRP 379 25.917 9.190 35.746 1.00109.32 C ATOM 2759 NE1 TRP 379 25.298 9.042 34.526 1.00109.32 N ATOM 2760 CE2 TRP 379 24.917 10.289 34.075 1.00109.32 C ATOM 2761 CE3 TRP 379 25.063 12.560 34.862 1.00109.32 C ATOM 2762 CZ2 TRP 379 24.270 10.674 32.935 1.00109.32 C ATOM 2763 CZ3 TRP 379 24.418 12.945 33.709 1.00109.32 C ATOM 2764 CH2 TRP 379 24.027 12.018 32.765 1.00109.32 C ATOM 2765 C TRP 379 28.568 11.970 36.352 1.00109.32 C ATOM 2766 O TRP 379 28.643 13.196 36.302 1.00109.32 O ATOM 2767 N SER 380 29.035 11.181 35.362 1.00 31.09 N ATOM 2768 CA SER 380 29.614 11.804 34.208 1.00 31.09 C ATOM 2769 CB SER 380 30.620 10.938 33.422 1.00 31.09 C ATOM 2770 OG SER 380 29.962 9.901 32.712 1.00 31.09 O ATOM 2771 C SER 380 28.502 12.183 33.288 1.00 31.09 C ATOM 2772 O SER 380 27.420 11.602 33.318 1.00 31.09 O ATOM 2773 N GLU 381 28.753 13.186 32.431 1.00 58.35 N ATOM 2774 CA GLU 381 27.722 13.642 31.557 1.00 58.35 C ATOM 2775 CB GLU 381 28.150 14.849 30.719 1.00 58.35 C ATOM 2776 CG GLU 381 27.019 15.449 29.891 1.00 58.35 C ATOM 2777 CD GLU 381 27.572 16.732 29.302 1.00 58.35 C ATOM 2778 OE1 GLU 381 27.709 17.720 30.073 1.00 58.35 O ATOM 2779 OE2 GLU 381 27.880 16.740 28.081 1.00 58.35 O ATOM 2780 C GLU 381 27.342 12.516 30.605 1.00 58.35 C ATOM 2781 O GLU 381 28.218 12.087 29.807 1.00 58.35 O ATOM 2782 OXT GLU 381 26.162 12.075 30.660 1.00 58.35 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 98.66 28.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 123.34 9.1 22 100.0 22 ARMSMC SURFACE . . . . . . . . 96.60 28.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 108.34 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.96 26.9 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 98.87 24.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 94.82 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 98.74 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 81.97 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.34 31.8 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 81.33 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 99.55 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 100.91 30.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 48.92 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.65 16.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 74.06 20.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 48.84 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 70.65 16.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 119.30 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 119.30 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 119.30 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.02 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.02 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3554 CRMSCA SECONDARY STRUCTURE . . 8.28 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.43 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.57 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.12 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.44 54 100.0 54 CRMSMC SURFACE . . . . . . . . 11.58 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.08 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.78 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 14.23 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.30 41 100.0 41 CRMSSC SURFACE . . . . . . . . 14.17 120 100.0 120 CRMSSC BURIED . . . . . . . . 7.63 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.50 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.32 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.98 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.12 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 105.292 0.797 0.819 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 96.577 0.843 0.857 11 100.0 11 ERRCA SURFACE . . . . . . . . 110.845 0.790 0.813 26 100.0 26 ERRCA BURIED . . . . . . . . 76.415 0.831 0.848 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 106.118 0.796 0.818 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 97.349 0.842 0.856 54 100.0 54 ERRMC SURFACE . . . . . . . . 111.127 0.788 0.811 129 100.0 129 ERRMC BURIED . . . . . . . . 78.021 0.840 0.856 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 118.683 0.793 0.817 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 120.242 0.786 0.811 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 117.101 0.858 0.869 41 100.0 41 ERRSC SURFACE . . . . . . . . 121.257 0.786 0.811 120 100.0 120 ERRSC BURIED . . . . . . . . 87.793 0.881 0.889 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 112.141 0.794 0.817 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 106.438 0.849 0.862 85 100.0 85 ERRALL SURFACE . . . . . . . . 116.411 0.787 0.811 224 100.0 224 ERRALL BURIED . . . . . . . . 80.260 0.847 0.861 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 7 17 31 31 DISTCA CA (P) 0.00 0.00 3.23 22.58 54.84 31 DISTCA CA (RMS) 0.00 0.00 2.11 3.82 6.33 DISTCA ALL (N) 0 4 8 36 111 254 254 DISTALL ALL (P) 0.00 1.57 3.15 14.17 43.70 254 DISTALL ALL (RMS) 0.00 1.65 2.12 3.73 6.37 DISTALL END of the results output