####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 297), selected 31 , name T0537TS129_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS129_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 351 - 368 4.64 8.20 LONGEST_CONTINUOUS_SEGMENT: 18 357 - 374 4.67 7.91 LONGEST_CONTINUOUS_SEGMENT: 18 358 - 375 4.78 7.77 LCS_AVERAGE: 55.78 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 359 - 365 1.94 8.64 LONGEST_CONTINUOUS_SEGMENT: 7 360 - 366 1.88 10.10 LONGEST_CONTINUOUS_SEGMENT: 7 361 - 367 1.81 11.08 LONGEST_CONTINUOUS_SEGMENT: 7 362 - 368 1.98 13.47 LCS_AVERAGE: 19.25 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 362 - 366 0.43 13.56 LONGEST_CONTINUOUS_SEGMENT: 5 377 - 381 0.87 17.30 LCS_AVERAGE: 13.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 18 3 3 3 4 7 7 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT A 352 A 352 3 4 18 3 3 3 3 5 6 9 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT E 353 E 353 3 6 18 3 3 3 6 7 10 10 11 13 17 18 19 20 22 24 25 25 27 28 29 LCS_GDT E 354 E 354 4 6 18 3 3 5 6 7 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT L 355 L 355 4 6 18 3 4 5 6 7 7 7 9 12 13 14 16 18 21 22 25 25 27 28 29 LCS_GDT G 356 G 356 4 6 18 3 4 5 6 7 7 7 9 10 11 12 13 14 17 18 18 21 23 25 26 LCS_GDT N 357 N 357 4 6 18 3 4 5 6 7 7 7 9 10 11 13 13 14 17 18 21 23 25 28 29 LCS_GDT I 358 I 358 4 6 18 3 4 5 6 7 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT I 359 I 359 3 7 18 3 3 5 6 7 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT V 360 V 360 4 7 18 3 4 4 4 6 8 10 11 13 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT A 361 A 361 4 7 18 3 4 6 6 8 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT W 362 W 362 5 7 18 4 5 5 5 8 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT N 363 N 363 5 7 18 4 5 6 6 8 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT P 364 P 364 5 7 18 4 5 6 6 8 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT N 365 N 365 5 7 18 4 5 5 6 7 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT L 366 L 366 5 7 18 4 5 5 6 7 10 10 11 14 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT W 367 W 367 4 7 18 3 4 4 5 6 7 8 11 14 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT K 368 K 368 3 7 18 3 4 4 5 7 8 9 13 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT K 369 K 369 3 5 18 3 3 3 4 5 6 8 9 11 14 16 21 21 22 24 25 25 27 28 29 LCS_GDT G 370 G 370 3 5 18 3 4 6 6 8 8 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT T 371 T 371 4 6 18 4 4 6 6 8 8 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT N 372 N 372 4 6 18 4 4 6 6 8 8 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT G 373 G 373 4 6 18 4 4 5 6 6 8 9 10 11 14 16 21 21 22 24 25 25 27 28 29 LCS_GDT Y 374 Y 374 4 6 18 4 4 5 6 6 6 7 9 11 13 15 17 18 22 23 24 25 27 28 29 LCS_GDT P 375 P 375 4 6 18 3 3 5 6 6 6 7 9 9 11 12 12 12 12 13 18 24 27 27 28 LCS_GDT I 376 I 376 4 6 17 0 3 5 6 6 6 7 9 9 11 12 12 15 20 20 21 25 27 27 29 LCS_GDT F 377 F 377 5 5 17 4 4 6 6 6 6 7 8 9 11 14 17 20 22 24 25 25 27 28 29 LCS_GDT Q 378 Q 378 5 5 13 4 4 6 6 6 6 7 9 9 11 12 12 12 14 18 19 25 27 28 29 LCS_GDT W 379 W 379 5 5 13 4 4 6 6 6 6 7 9 10 13 14 15 20 21 24 25 25 27 28 29 LCS_GDT S 380 S 380 5 5 13 4 4 6 6 8 8 10 14 15 17 19 21 21 22 24 25 25 27 28 29 LCS_GDT E 381 E 381 5 5 13 3 3 6 6 6 6 7 9 11 16 19 21 21 22 24 25 25 27 28 29 LCS_AVERAGE LCS_A: 29.41 ( 13.22 19.25 55.78 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 6 8 10 10 14 15 17 19 21 21 22 24 25 25 27 28 29 GDT PERCENT_AT 12.90 16.13 19.35 19.35 25.81 32.26 32.26 45.16 48.39 54.84 61.29 67.74 67.74 70.97 77.42 80.65 80.65 87.10 90.32 93.55 GDT RMS_LOCAL 0.13 0.43 0.92 0.92 1.75 2.01 2.01 3.19 3.27 3.52 3.82 4.19 4.19 4.40 4.93 5.10 5.10 5.68 5.85 6.07 GDT RMS_ALL_AT 15.80 13.56 18.68 18.68 7.41 7.67 7.67 6.89 6.93 6.96 6.99 7.02 7.02 6.96 6.77 6.79 6.79 6.74 6.69 6.67 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 3.874 0 0.192 0.330 5.553 34.762 43.492 LGA A 352 A 352 3.754 0 0.588 0.555 5.119 37.738 41.619 LGA E 353 E 353 7.563 0 0.210 0.675 14.767 11.667 5.344 LGA E 354 E 354 4.189 0 0.467 1.113 6.720 25.714 44.444 LGA L 355 L 355 8.123 0 0.366 1.403 11.829 5.595 2.857 LGA G 356 G 356 12.762 0 0.235 0.235 13.186 0.000 0.000 LGA N 357 N 357 11.058 0 0.582 1.340 15.690 1.429 0.714 LGA I 358 I 358 4.020 0 0.586 0.576 6.481 35.238 48.214 LGA I 359 I 359 2.435 0 0.578 0.553 3.917 53.810 63.393 LGA V 360 V 360 5.260 0 0.590 0.609 9.633 42.619 25.850 LGA A 361 A 361 0.647 0 0.108 0.112 2.533 73.452 76.857 LGA W 362 W 362 3.352 0 0.031 1.460 14.478 52.262 18.980 LGA N 363 N 363 1.622 0 0.074 0.938 2.514 75.000 73.036 LGA P 364 P 364 1.421 0 0.058 0.112 2.591 70.952 68.367 LGA N 365 N 365 3.904 0 0.055 0.904 8.621 39.524 29.464 LGA L 366 L 366 5.287 0 0.012 0.044 8.247 27.738 18.452 LGA W 367 W 367 5.753 0 0.461 0.517 12.772 26.310 9.626 LGA K 368 K 368 4.403 0 0.524 1.228 10.381 27.619 22.063 LGA K 369 K 369 6.761 0 0.511 0.502 17.748 25.595 11.534 LGA G 370 G 370 2.925 0 0.180 0.180 4.293 46.905 46.905 LGA T 371 T 371 3.324 0 0.268 0.259 3.862 50.000 47.143 LGA N 372 N 372 3.669 0 0.045 1.296 7.691 36.071 28.929 LGA G 373 G 373 7.410 0 0.253 0.253 9.791 9.167 9.167 LGA Y 374 Y 374 9.888 0 0.171 1.219 14.458 2.024 0.675 LGA P 375 P 375 13.205 0 0.598 0.623 17.220 0.000 0.000 LGA I 376 I 376 11.513 0 0.550 0.502 12.197 0.000 0.417 LGA F 377 F 377 8.616 0 0.673 0.992 15.064 8.214 3.247 LGA Q 378 Q 378 10.829 0 0.022 1.252 19.449 0.000 0.000 LGA W 379 W 379 9.113 0 0.232 1.066 15.617 10.119 2.891 LGA S 380 S 380 2.972 0 0.016 0.681 5.385 50.833 44.444 LGA E 381 E 381 5.815 1 0.029 0.771 12.519 30.000 13.143 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 6.660 6.485 8.483 29.366 25.847 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 14 3.19 40.323 35.599 0.426 LGA_LOCAL RMSD: 3.187 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.892 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 6.660 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.755970 * X + 0.559583 * Y + -0.339671 * Z + 30.152670 Y_new = -0.320177 * X + -0.768670 * Y + -0.553745 * Z + -150.789078 Z_new = -0.570961 * X + -0.309860 * Y + 0.760257 * Z + 75.579742 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.740967 0.607676 -0.387017 [DEG: -157.0458 34.8173 -22.1745 ] ZXZ: -0.550219 0.707088 -2.068017 [DEG: -31.5252 40.5132 -118.4886 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS129_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS129_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 14 3.19 35.599 6.66 REMARK ---------------------------------------------------------- MOLECULE T0537TS129_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2991 N SER 351 1.486 9.834 51.310 1.00 1.00 N ATOM 2992 CA SER 351 1.724 11.069 52.049 1.00 1.00 C ATOM 2993 C SER 351 2.121 12.205 51.112 1.00 1.00 C ATOM 2994 O SER 351 1.684 12.256 49.964 1.00 1.00 O ATOM 2995 H SER 351 1.624 8.983 51.836 1.00 1.00 H ATOM 2996 CB SER 351 2.800 10.849 53.102 1.00 1.00 C ATOM 2997 OG SER 351 3.974 10.303 52.527 1.00 1.00 O ATOM 2998 N ALA 352 2.953 13.114 51.612 1.00 1.00 N ATOM 2999 CA ALA 352 3.410 14.250 50.822 1.00 1.00 C ATOM 3000 C ALA 352 4.320 13.800 49.684 1.00 1.00 C ATOM 3001 O ALA 352 5.481 13.453 49.905 1.00 1.00 O ATOM 3002 H ALA 352 3.311 13.071 52.555 1.00 1.00 H ATOM 3003 CB ALA 352 4.129 15.251 51.712 1.00 1.00 C ATOM 3004 N GLU 353 4.516 12.490 49.572 1.00 1.00 N ATOM 3005 CA GLU 353 5.364 11.929 48.527 1.00 1.00 C ATOM 3006 C GLU 353 6.714 11.493 49.088 1.00 1.00 C ATOM 3007 O GLU 353 7.536 10.915 48.376 1.00 1.00 O ATOM 3008 H GLU 353 4.094 11.816 50.195 1.00 1.00 H ATOM 3009 CB GLU 353 5.556 12.941 47.408 1.00 1.00 C ATOM 3010 CG GLU 353 4.258 13.441 46.796 1.00 1.00 C ATOM 3011 CD GLU 353 4.489 14.376 45.624 1.00 1.00 C ATOM 3012 OE1 GLU 353 5.491 14.187 44.903 1.00 1.00 O ATOM 3013 OE2 GLU 353 3.668 15.296 45.428 1.00 1.00 O ATOM 3014 N GLU 354 6.720 10.369 49.795 1.00 1.00 N ATOM 3015 CA GLU 354 7.945 9.842 50.387 1.00 1.00 C ATOM 3016 C GLU 354 8.515 8.701 49.551 1.00 1.00 C ATOM 3017 O GLU 354 8.458 8.731 48.321 1.00 1.00 O ATOM 3018 H GLU 354 5.890 9.819 49.963 1.00 1.00 H ATOM 3019 CB GLU 354 7.681 9.377 51.810 1.00 1.00 C ATOM 3020 CG GLU 354 7.314 10.495 52.771 1.00 1.00 C ATOM 3021 CD GLU 354 7.254 10.029 54.213 1.00 1.00 C ATOM 3022 OE1 GLU 354 6.826 8.879 54.447 1.00 1.00 O ATOM 3023 OE2 GLU 354 7.635 10.812 55.107 1.00 1.00 O ATOM 3024 N LEU 355 8.005 7.495 49.779 1.00 1.00 N ATOM 3025 CA LEU 355 8.463 6.320 49.048 1.00 1.00 C ATOM 3026 C LEU 355 9.038 6.705 47.688 1.00 1.00 C ATOM 3027 O LEU 355 8.898 5.968 46.713 1.00 1.00 O ATOM 3028 H LEU 355 7.282 7.324 50.462 1.00 1.00 H ATOM 3029 CB LEU 355 7.319 5.332 48.878 1.00 1.00 C ATOM 3030 CG LEU 355 7.665 4.004 48.201 1.00 1.00 C ATOM 3031 CD1 LEU 355 8.786 3.297 48.947 1.00 1.00 C ATOM 3032 CD2 LEU 355 6.440 3.107 48.120 1.00 1.00 C ATOM 3033 N GLY 356 10.265 6.266 47.426 1.00 1.00 N ATOM 3034 CA GLY 356 10.931 6.564 46.164 1.00 1.00 C ATOM 3035 C GLY 356 12.390 6.946 46.387 1.00 1.00 C ATOM 3036 O GLY 356 13.270 6.085 46.412 1.00 1.00 O ATOM 3037 H GLY 356 10.801 5.709 48.076 1.00 1.00 H ATOM 3038 N ASN 357 12.640 8.242 46.547 1.00 1.00 N ATOM 3039 CA ASN 357 13.991 8.740 46.767 1.00 1.00 C ATOM 3040 C ASN 357 14.113 9.425 48.124 1.00 1.00 C ATOM 3041 O ASN 357 13.499 10.466 48.361 1.00 1.00 O ATOM 3042 H ASN 357 11.918 8.947 46.526 1.00 1.00 H ATOM 3043 CB ASN 357 14.385 9.698 45.653 1.00 1.00 C ATOM 3044 CG ASN 357 15.880 9.943 45.596 1.00 1.00 C ATOM 3045 OD1 ASN 357 16.323 10.710 44.715 1.00 1.00 O ATOM 3046 ND2 ASN 357 16.616 9.312 46.503 1.00 1.00 N ATOM 3047 HD21 ASN 357 16.188 8.726 47.161 1.00 1.00 H ATOM 3048 HD22 ASN 357 17.589 9.433 46.514 1.00 1.00 H ATOM 3049 N ILE 358 13.467 8.848 49.133 1.00 1.00 N ATOM 3050 CA ILE 358 13.500 9.402 50.481 1.00 1.00 C ATOM 3051 C ILE 358 14.761 10.231 50.705 1.00 1.00 C ATOM 3052 O ILE 358 15.875 9.709 50.658 1.00 1.00 O ATOM 3053 H ILE 358 12.922 8.004 49.026 1.00 1.00 H ATOM 3054 CB ILE 358 13.412 8.283 51.508 1.00 1.00 C ATOM 3055 CG1 ILE 358 12.033 7.623 51.459 1.00 1.00 C ATOM 3056 CG2 ILE 358 13.722 8.813 52.900 1.00 1.00 C ATOM 3057 CD1 ILE 358 11.937 6.347 52.268 1.00 1.00 C ATOM 3058 N ILE 359 14.636 11.281 51.509 1.00 1.00 N ATOM 3059 CA ILE 359 15.765 12.156 51.807 1.00 1.00 C ATOM 3060 C ILE 359 16.800 11.446 52.672 1.00 1.00 C ATOM 3061 O ILE 359 16.452 10.692 53.581 1.00 1.00 O ATOM 3062 H ILE 359 13.766 11.532 51.955 1.00 1.00 H ATOM 3063 CB ILE 359 15.277 13.422 52.496 1.00 1.00 C ATOM 3064 CG1 ILE 359 14.535 14.317 51.502 1.00 1.00 C ATOM 3065 CG2 ILE 359 16.441 14.159 53.140 1.00 1.00 C ATOM 3066 CD1 ILE 359 13.756 15.439 52.154 1.00 1.00 C ATOM 3067 N VAL 360 18.052 11.878 52.562 1.00 1.00 N ATOM 3068 CA VAL 360 19.138 11.284 53.333 1.00 1.00 C ATOM 3069 C VAL 360 19.117 11.769 54.778 1.00 1.00 C ATOM 3070 O VAL 360 19.461 12.917 55.063 1.00 1.00 O ATOM 3071 H VAL 360 18.321 12.636 51.952 1.00 1.00 H ATOM 3072 CB VAL 360 20.476 11.604 52.684 1.00 1.00 C ATOM 3073 CG1 VAL 360 21.611 10.943 53.452 1.00 1.00 C ATOM 3074 CG2 VAL 360 20.483 11.160 51.230 1.00 1.00 C ATOM 3075 N ALA 361 18.712 10.888 55.688 1.00 1.00 N ATOM 3076 CA ALA 361 18.615 11.236 57.100 1.00 1.00 C ATOM 3077 C ALA 361 19.939 11.002 57.818 1.00 1.00 C ATOM 3078 O ALA 361 20.051 11.226 59.023 1.00 1.00 O ATOM 3079 H ALA 361 18.429 9.947 55.453 1.00 1.00 H ATOM 3080 CB ALA 361 17.504 10.433 57.761 1.00 1.00 C ATOM 3081 N TRP 362 20.941 10.552 57.070 1.00 1.00 N ATOM 3082 CA TRP 362 22.275 10.345 57.620 1.00 1.00 C ATOM 3083 C TRP 362 22.748 11.571 58.395 1.00 1.00 C ATOM 3084 O TRP 362 23.338 11.449 59.468 1.00 1.00 O ATOM 3085 H TRP 362 20.849 10.368 56.081 1.00 1.00 H ATOM 3086 CB TRP 362 23.255 10.013 56.504 1.00 1.00 C ATOM 3087 CG TRP 362 24.650 9.764 56.987 1.00 1.00 C ATOM 3088 CD1 TRP 362 25.590 10.703 57.300 1.00 1.00 C ATOM 3089 CD2 TRP 362 25.266 8.490 57.212 1.00 1.00 C ATOM 3090 NE1 TRP 362 26.753 10.095 57.707 1.00 1.00 N ATOM 3091 CE2 TRP 362 26.579 8.734 57.661 1.00 1.00 C ATOM 3092 CE3 TRP 362 24.834 7.167 57.078 1.00 1.00 C ATOM 3093 CZ2 TRP 362 27.464 7.705 57.976 1.00 1.00 C ATOM 3094 CZ3 TRP 362 25.713 6.148 57.391 1.00 1.00 C ATOM 3095 CH2 TRP 362 27.065 6.388 57.853 1.00 1.00 H ATOM 3096 HH2 TRP 362 27.526 10.639 57.967 1.00 1.00 H ATOM 3097 N ASN 363 22.483 12.751 57.843 1.00 1.00 N ATOM 3098 CA ASN 363 22.867 14.001 58.488 1.00 1.00 C ATOM 3099 C ASN 363 21.720 14.568 59.318 1.00 1.00 C ATOM 3100 O ASN 363 20.708 15.012 58.775 1.00 1.00 O ATOM 3101 H ASN 363 21.999 12.851 56.963 1.00 1.00 H ATOM 3102 CB ASN 363 23.317 15.012 57.445 1.00 1.00 C ATOM 3103 CG ASN 363 24.650 14.649 56.818 1.00 1.00 C ATOM 3104 OD1 ASN 363 25.675 14.704 57.529 1.00 1.00 O ATOM 3105 ND2 ASN 363 24.623 14.294 55.540 1.00 1.00 N ATOM 3106 HD21 ASN 363 23.772 14.277 55.053 1.00 1.00 H ATOM 3107 HD22 ASN 363 25.454 14.048 55.081 1.00 1.00 H ATOM 3108 N PRO 364 21.885 14.551 60.636 1.00 1.00 N ATOM 3109 CA PRO 364 20.798 14.885 61.549 1.00 1.00 C ATOM 3110 C PRO 364 20.708 16.391 61.774 1.00 1.00 C ATOM 3111 O PRO 364 19.772 16.879 62.404 1.00 1.00 O ATOM 3112 H PRO 364 21.885 14.551 60.636 1.00 1.00 H ATOM 3113 CB PRO 364 20.986 14.162 62.874 1.00 1.00 C ATOM 3114 CG PRO 364 21.909 13.034 62.555 1.00 1.00 C ATOM 3115 CD PRO 364 22.809 13.528 61.458 1.00 1.00 C ATOM 3116 N ASN 365 21.690 17.121 61.253 1.00 1.00 N ATOM 3117 CA ASN 365 21.706 18.574 61.367 1.00 1.00 C ATOM 3118 C ASN 365 20.588 19.205 60.543 1.00 1.00 C ATOM 3119 O ASN 365 20.146 20.318 60.828 1.00 1.00 O ATOM 3120 H ASN 365 22.458 16.720 60.735 1.00 1.00 H ATOM 3121 CB ASN 365 23.058 19.118 60.931 1.00 1.00 C ATOM 3122 CG ASN 365 23.779 19.849 62.046 1.00 1.00 C ATOM 3123 OD1 ASN 365 24.561 19.201 62.772 1.00 1.00 O ATOM 3124 ND2 ASN 365 23.518 21.147 62.166 1.00 1.00 N ATOM 3125 HD21 ASN 365 22.889 21.579 61.552 1.00 1.00 H ATOM 3126 HD22 ASN 365 23.956 21.671 62.870 1.00 1.00 H ATOM 3127 N LEU 366 20.136 18.486 59.521 1.00 1.00 N ATOM 3128 CA LEU 366 19.034 18.951 58.686 1.00 1.00 C ATOM 3129 C LEU 366 17.797 19.253 59.523 1.00 1.00 C ATOM 3130 O LEU 366 17.176 20.305 59.374 1.00 1.00 O ATOM 3131 H LEU 366 20.499 17.574 59.287 1.00 1.00 H ATOM 3132 CB LEU 366 18.714 17.916 57.619 1.00 1.00 C ATOM 3133 CG LEU 366 17.419 18.131 56.832 1.00 1.00 C ATOM 3134 CD1 LEU 366 17.520 19.373 55.960 1.00 1.00 C ATOM 3135 CD2 LEU 366 17.099 16.913 55.980 1.00 1.00 C ATOM 3136 N TRP 367 17.443 18.322 60.403 1.00 1.00 N ATOM 3137 CA TRP 367 16.286 18.492 61.274 1.00 1.00 C ATOM 3138 C TRP 367 16.673 19.179 62.579 1.00 1.00 C ATOM 3139 O TRP 367 16.301 18.729 63.663 1.00 1.00 O ATOM 3140 H TRP 367 17.953 17.458 60.526 1.00 1.00 H ATOM 3141 CB TRP 367 15.642 17.143 61.556 1.00 1.00 C ATOM 3142 CG TRP 367 14.740 16.667 60.457 1.00 1.00 C ATOM 3143 CD1 TRP 367 15.085 15.870 59.403 1.00 1.00 C ATOM 3144 CD2 TRP 367 13.346 16.958 60.303 1.00 1.00 C ATOM 3145 NE1 TRP 367 13.992 15.646 58.602 1.00 1.00 N ATOM 3146 CE2 TRP 367 12.911 16.304 59.134 1.00 1.00 C ATOM 3147 CE3 TRP 367 12.425 17.707 61.041 1.00 1.00 C ATOM 3148 CZ2 TRP 367 11.594 16.376 58.684 1.00 1.00 C ATOM 3149 CZ3 TRP 367 11.120 17.778 60.593 1.00 1.00 C ATOM 3150 CH2 TRP 367 10.661 17.110 59.392 1.00 1.00 H ATOM 3151 HH2 TRP 367 14.078 15.089 57.801 1.00 1.00 H ATOM 3152 N LYS 368 17.422 20.270 62.467 1.00 1.00 N ATOM 3153 CA LYS 368 17.862 21.021 63.638 1.00 1.00 C ATOM 3154 C LYS 368 17.517 22.501 63.505 1.00 1.00 C ATOM 3155 O LYS 368 16.733 23.038 64.288 1.00 1.00 O ATOM 3156 H LYS 368 17.728 20.639 61.579 1.00 1.00 H ATOM 3157 CB LYS 368 19.358 20.842 63.844 1.00 1.00 C ATOM 3158 CG LYS 368 19.772 19.419 64.182 1.00 1.00 C ATOM 3159 CD LYS 368 19.147 18.959 65.489 1.00 1.00 C ATOM 3160 CE LYS 368 19.644 17.577 65.883 1.00 1.00 C ATOM 3161 NZ LYS 368 19.033 17.110 67.157 1.00 1.00 N ATOM 3162 N LYS 369 18.107 23.154 62.510 1.00 1.00 N ATOM 3163 CA LYS 369 17.863 24.571 62.273 1.00 1.00 C ATOM 3164 C LYS 369 17.161 24.795 60.937 1.00 1.00 C ATOM 3165 O LYS 369 17.420 25.781 60.246 1.00 1.00 O ATOM 3166 H LYS 369 18.750 22.713 61.867 1.00 1.00 H ATOM 3167 CB LYS 369 19.173 25.343 62.318 1.00 1.00 C ATOM 3168 CG LYS 369 19.875 25.294 63.666 1.00 1.00 C ATOM 3169 CD LYS 369 21.203 26.033 63.624 1.00 1.00 C ATOM 3170 CE LYS 369 21.853 26.080 64.996 1.00 1.00 C ATOM 3171 NZ LYS 369 23.185 26.744 64.958 1.00 1.00 N ATOM 3172 N GLY 370 16.432 23.782 60.481 1.00 1.00 N ATOM 3173 CA GLY 370 15.710 23.865 59.217 1.00 1.00 C ATOM 3174 C GLY 370 14.710 25.016 59.229 1.00 1.00 C ATOM 3175 O GLY 370 13.767 25.025 60.020 1.00 1.00 O ATOM 3176 H GLY 370 16.336 22.907 60.976 1.00 1.00 H ATOM 3177 N THR 371 14.201 25.341 60.412 1.00 1.00 N ATOM 3178 CA THR 371 13.236 26.423 60.561 1.00 1.00 C ATOM 3179 C THR 371 12.180 26.374 59.462 1.00 1.00 C ATOM 3180 O THR 371 11.089 25.838 59.658 1.00 1.00 O ATOM 3181 H THR 371 14.451 24.864 61.267 1.00 1.00 H ATOM 3182 CB THR 371 13.948 27.767 60.554 1.00 1.00 C ATOM 3183 OG1 THR 371 14.504 28.008 59.255 1.00 1.00 O ATOM 3184 CG2 THR 371 15.049 27.791 61.603 1.00 1.00 C ATOM 3185 N ASN 372 11.717 27.547 59.041 1.00 1.00 N ATOM 3186 CA ASN 372 10.705 27.641 57.995 1.00 1.00 C ATOM 3187 C ASN 372 11.346 27.852 56.626 1.00 1.00 C ATOM 3188 O ASN 372 10.658 28.134 55.646 1.00 1.00 O ATOM 3189 H ASN 372 12.093 28.431 59.353 1.00 1.00 H ATOM 3190 CB ASN 372 9.734 28.768 58.306 1.00 1.00 C ATOM 3191 CG ASN 372 8.802 28.435 59.454 1.00 1.00 C ATOM 3192 OD1 ASN 372 7.863 27.638 59.246 1.00 1.00 O ATOM 3193 ND2 ASN 372 9.061 29.026 60.615 1.00 1.00 N ATOM 3194 HD21 ASN 372 9.821 29.641 60.694 1.00 1.00 H ATOM 3195 HD22 ASN 372 8.492 28.849 61.393 1.00 1.00 H ATOM 3196 N GLY 373 12.667 27.714 56.569 1.00 1.00 N ATOM 3197 CA GLY 373 13.397 27.856 55.315 1.00 1.00 C ATOM 3198 C GLY 373 13.410 29.307 54.845 1.00 1.00 C ATOM 3199 O GLY 373 13.472 29.580 53.647 1.00 1.00 O ATOM 3200 H GLY 373 13.231 27.483 57.373 1.00 1.00 H ATOM 3201 N TYR 374 13.353 30.233 55.798 1.00 1.00 N ATOM 3202 CA TYR 374 13.304 31.654 55.482 1.00 1.00 C ATOM 3203 C TYR 374 14.463 32.058 54.577 1.00 1.00 C ATOM 3204 O TYR 374 15.434 31.315 54.426 1.00 1.00 O ATOM 3205 H TYR 374 13.302 30.008 56.781 1.00 1.00 H ATOM 3206 CB TYR 374 13.319 32.476 56.761 1.00 1.00 C ATOM 3207 CG TYR 374 11.973 32.570 57.444 1.00 1.00 C ATOM 3208 CD1 TYR 374 11.776 32.023 58.705 1.00 1.00 C ATOM 3209 CD2 TYR 374 10.904 33.207 56.825 1.00 1.00 C ATOM 3210 CE1 TYR 374 10.549 32.105 59.337 1.00 1.00 C ATOM 3211 CE2 TYR 374 9.671 33.298 57.442 1.00 1.00 C ATOM 3212 CZ TYR 374 9.500 32.740 58.708 1.00 1.00 C ATOM 3213 OH TYR 374 8.277 32.825 59.331 1.00 1.00 H ATOM 3214 N PRO 375 14.356 33.240 53.977 1.00 1.00 N ATOM 3215 CA PRO 375 15.396 33.745 53.088 1.00 1.00 C ATOM 3216 C PRO 375 16.760 33.727 53.769 1.00 1.00 C ATOM 3217 O PRO 375 17.762 33.348 53.163 1.00 1.00 O ATOM 3218 H PRO 375 14.356 33.240 53.977 1.00 1.00 H ATOM 3219 CB PRO 375 15.051 35.153 52.627 1.00 1.00 C ATOM 3220 CG PRO 375 14.270 35.735 53.757 1.00 1.00 C ATOM 3221 CD PRO 375 13.260 34.693 54.147 1.00 1.00 C ATOM 3222 N ILE 376 16.791 34.140 55.032 1.00 1.00 N ATOM 3223 CA ILE 376 18.044 34.263 55.766 1.00 1.00 C ATOM 3224 C ILE 376 18.733 32.910 55.912 1.00 1.00 C ATOM 3225 O ILE 376 19.928 32.779 55.647 1.00 1.00 O ATOM 3226 H ILE 376 15.969 34.451 55.529 1.00 1.00 H ATOM 3227 CB ILE 376 17.791 34.879 57.134 1.00 1.00 C ATOM 3228 CG1 ILE 376 16.787 34.035 57.922 1.00 1.00 C ATOM 3229 CG2 ILE 376 17.311 36.315 56.990 1.00 1.00 C ATOM 3230 CD1 ILE 376 16.515 34.553 59.317 1.00 1.00 C ATOM 3231 N PHE 377 17.972 31.907 56.337 1.00 1.00 N ATOM 3232 CA PHE 377 18.486 30.547 56.443 1.00 1.00 C ATOM 3233 C PHE 377 18.816 29.974 55.068 1.00 1.00 C ATOM 3234 O PHE 377 19.580 29.016 54.951 1.00 1.00 O ATOM 3235 H PHE 377 16.992 32.014 56.555 1.00 1.00 H ATOM 3236 CB PHE 377 17.479 29.660 57.159 1.00 1.00 C ATOM 3237 CG PHE 377 17.258 30.033 58.596 1.00 1.00 C ATOM 3238 CD1 PHE 377 18.177 29.677 59.569 1.00 1.00 C ATOM 3239 CD2 PHE 377 16.126 30.742 58.962 1.00 1.00 C ATOM 3240 CE1 PHE 377 17.958 30.029 60.889 1.00 1.00 C ATOM 3241 CE2 PHE 377 15.922 31.085 60.287 1.00 1.00 C ATOM 3242 CZ PHE 377 16.822 30.736 61.238 1.00 1.00 C ATOM 3243 N GLN 378 18.235 30.566 54.030 1.00 1.00 N ATOM 3244 CA GLN 378 18.536 30.177 52.658 1.00 1.00 C ATOM 3245 C GLN 378 19.977 30.520 52.292 1.00 1.00 C ATOM 3246 O GLN 378 20.621 29.803 51.525 1.00 1.00 O ATOM 3247 H GLN 378 17.607 31.352 54.126 1.00 1.00 H ATOM 3248 CB GLN 378 17.570 30.853 51.698 1.00 1.00 C ATOM 3249 CG GLN 378 17.845 30.561 50.232 1.00 1.00 C ATOM 3250 CD GLN 378 17.046 31.450 49.300 1.00 1.00 C ATOM 3251 OE1 GLN 378 15.827 31.604 49.525 1.00 1.00 O ATOM 3252 NE2 GLN 378 17.714 32.008 48.297 1.00 1.00 N ATOM 3253 HE21 GLN 378 18.673 31.835 48.191 1.00 1.00 H ATOM 3254 HE22 GLN 378 17.250 32.593 47.663 1.00 1.00 H ATOM 3255 N TRP 379 20.476 31.620 52.844 1.00 1.00 N ATOM 3256 CA TRP 379 21.845 32.054 52.586 1.00 1.00 C ATOM 3257 C TRP 379 22.850 31.157 53.302 1.00 1.00 C ATOM 3258 O TRP 379 23.873 30.777 52.733 1.00 1.00 O ATOM 3259 H TRP 379 19.949 32.209 53.473 1.00 1.00 H ATOM 3260 CB TRP 379 22.025 33.501 53.016 1.00 1.00 C ATOM 3261 CG TRP 379 21.241 34.475 52.190 1.00 1.00 C ATOM 3262 CD1 TRP 379 19.966 34.905 52.422 1.00 1.00 C ATOM 3263 CD2 TRP 379 21.679 35.138 50.998 1.00 1.00 C ATOM 3264 NE1 TRP 379 19.583 35.796 51.449 1.00 1.00 N ATOM 3265 CE2 TRP 379 20.618 35.955 50.562 1.00 1.00 C ATOM 3266 CE3 TRP 379 22.867 35.119 50.259 1.00 1.00 C ATOM 3267 CZ2 TRP 379 20.708 36.748 49.418 1.00 1.00 C ATOM 3268 CZ3 TRP 379 22.952 35.906 49.126 1.00 1.00 C ATOM 3269 CH2 TRP 379 21.868 36.750 48.668 1.00 1.00 H ATOM 3270 HH2 TRP 379 18.689 36.197 51.476 1.00 1.00 H ATOM 3271 N SER 380 22.553 30.825 54.555 1.00 1.00 N ATOM 3272 CA SER 380 23.449 30.007 55.363 1.00 1.00 C ATOM 3273 C SER 380 23.312 28.528 55.014 1.00 1.00 C ATOM 3274 O SER 380 22.223 28.056 54.692 1.00 1.00 O ATOM 3275 H SER 380 21.715 31.137 55.022 1.00 1.00 H ATOM 3276 CB SER 380 23.170 30.230 56.841 1.00 1.00 C ATOM 3277 OG SER 380 23.950 29.362 57.645 1.00 1.00 O ATOM 3278 N GLU 381 24.425 27.805 55.080 1.00 1.00 N ATOM 3279 CA GLU 381 24.418 26.367 54.841 1.00 1.00 C ATOM 3280 C GLU 381 22.997 25.842 54.672 1.00 1.00 C ATOM 3281 O GLU 381 22.055 26.368 55.266 1.00 1.00 O ATOM 3282 H GLU 381 25.319 28.193 55.344 1.00 1.00 H ATOM 3283 CB GLU 381 25.117 25.644 55.983 1.00 1.00 C ATOM 3284 CG GLU 381 26.606 25.934 56.081 1.00 1.00 C ATOM 3285 CD GLU 381 27.234 25.342 57.327 1.00 1.00 C ATOM 3286 OE1 GLU 381 26.882 24.198 57.685 1.00 1.00 O ATOM 3287 OE2 GLU 381 28.078 26.022 57.947 1.00 1.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 81.83 41.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 93.66 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 72.92 44.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 116.58 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.34 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 77.81 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 75.08 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 80.29 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 32.83 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.60 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 62.02 68.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 83.67 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 79.23 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 58.87 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 42.04 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 28.07 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 37.82 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 42.04 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.03 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 3.03 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 3.03 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.66 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.66 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2149 CRMSCA SECONDARY STRUCTURE . . 6.63 11 100.0 11 CRMSCA SURFACE . . . . . . . . 6.25 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.47 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.66 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.54 54 100.0 54 CRMSMC SURFACE . . . . . . . . 6.31 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.32 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.12 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 10.06 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.27 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.16 119 99.2 120 CRMSSC BURIED . . . . . . . . 9.72 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.54 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.98 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.52 223 99.6 224 CRMSALL BURIED . . . . . . . . 8.66 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.994 0.653 0.327 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 4.791 0.627 0.314 11 100.0 11 ERRCA SURFACE . . . . . . . . 4.710 0.643 0.322 26 100.0 26 ERRCA BURIED . . . . . . . . 6.470 0.704 0.352 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.029 0.665 0.332 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 4.800 0.646 0.323 54 100.0 54 ERRMC SURFACE . . . . . . . . 4.798 0.659 0.329 129 100.0 129 ERRMC BURIED . . . . . . . . 6.323 0.698 0.349 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.200 0.743 0.371 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 8.159 0.744 0.372 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 7.222 0.705 0.352 41 100.0 41 ERRSC SURFACE . . . . . . . . 8.270 0.746 0.373 119 99.2 120 ERRSC BURIED . . . . . . . . 7.367 0.707 0.354 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.592 0.704 0.352 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 5.986 0.678 0.339 85 100.0 85 ERRALL SURFACE . . . . . . . . 6.597 0.705 0.353 223 99.6 224 ERRALL BURIED . . . . . . . . 6.550 0.699 0.349 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 5 13 27 31 31 DISTCA CA (P) 0.00 3.23 16.13 41.94 87.10 31 DISTCA CA (RMS) 0.00 1.26 2.22 3.50 5.66 DISTCA ALL (N) 2 6 26 84 176 253 254 DISTALL ALL (P) 0.79 2.36 10.24 33.07 69.29 254 DISTALL ALL (RMS) 0.92 1.39 2.28 3.63 5.89 DISTALL END of the results output