####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS127_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS127_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 351 - 379 4.98 5.77 LCS_AVERAGE: 92.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 365 - 373 1.54 11.26 LONGEST_CONTINUOUS_SEGMENT: 9 366 - 374 1.92 9.43 LCS_AVERAGE: 19.25 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 0.95 10.67 LCS_AVERAGE: 14.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 4 4 29 3 4 4 5 5 6 13 18 20 21 21 23 24 26 26 28 29 30 30 31 LCS_GDT A 352 A 352 4 4 29 3 4 4 5 5 11 13 17 20 20 21 23 24 26 26 28 29 30 30 31 LCS_GDT E 353 E 353 4 4 29 3 4 4 6 9 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT E 354 E 354 4 4 29 3 4 4 5 7 9 13 17 19 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT L 355 L 355 4 4 29 3 4 4 4 4 6 8 10 14 16 18 22 24 25 26 28 29 30 30 31 LCS_GDT G 356 G 356 4 4 29 3 4 4 4 4 8 10 12 14 18 22 23 24 26 26 28 29 30 30 31 LCS_GDT N 357 N 357 3 4 29 3 3 3 5 5 8 11 14 17 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT I 358 I 358 3 3 29 3 3 3 4 4 6 9 10 13 16 20 22 24 25 26 28 29 30 30 31 LCS_GDT I 359 I 359 3 3 29 3 3 4 4 5 8 11 14 17 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT V 360 V 360 3 3 29 2 4 5 8 10 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT A 361 A 361 3 3 29 0 3 4 4 9 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT W 362 W 362 3 5 29 3 3 3 8 10 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT N 363 N 363 4 5 29 3 4 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT P 364 P 364 4 5 29 3 4 4 4 4 5 7 8 12 16 16 22 23 24 25 27 29 30 30 31 LCS_GDT N 365 N 365 4 9 29 3 4 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT L 366 L 366 7 9 29 3 5 7 8 10 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT W 367 W 367 7 9 29 3 5 7 8 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT K 368 K 368 7 9 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT K 369 K 369 7 9 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT G 370 G 370 7 9 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT T 371 T 371 7 9 29 3 5 7 8 10 13 14 16 20 20 21 23 24 26 26 28 29 29 30 31 LCS_GDT N 372 N 372 7 9 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT G 373 G 373 4 9 29 3 4 4 8 9 11 14 17 19 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT Y 374 Y 374 3 9 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT P 375 P 375 4 7 29 3 3 5 7 10 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT I 376 I 376 4 7 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT F 377 F 377 4 6 29 3 4 5 8 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT Q 378 Q 378 4 6 29 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 LCS_GDT W 379 W 379 4 6 29 3 4 5 6 10 13 14 16 19 21 21 23 24 26 26 28 29 30 30 31 LCS_GDT S 380 S 380 4 4 23 3 4 4 4 4 4 5 6 9 10 14 16 22 23 25 27 29 30 30 31 LCS_GDT E 381 E 381 4 4 23 3 4 4 4 4 4 5 6 6 9 11 15 15 17 20 26 29 30 30 31 LCS_AVERAGE LCS_A: 41.97 ( 14.36 19.25 92.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 7 9 11 13 17 18 20 21 22 23 24 26 26 28 29 30 30 31 GDT PERCENT_AT 9.68 16.13 22.58 29.03 35.48 41.94 54.84 58.06 64.52 67.74 70.97 74.19 77.42 83.87 83.87 90.32 93.55 96.77 96.77 100.00 GDT RMS_LOCAL 0.06 0.66 0.95 1.37 1.69 2.10 2.62 2.70 2.95 3.29 3.67 3.56 3.80 4.23 4.23 4.72 5.03 5.45 5.27 5.56 GDT RMS_ALL_AT 19.46 6.10 10.67 6.80 6.80 6.32 6.10 6.14 6.35 5.86 5.84 5.98 5.89 5.76 5.76 5.76 5.63 5.57 5.62 5.56 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 3.662 0 0.721 0.624 5.014 49.881 45.635 LGA A 352 A 352 4.829 0 0.056 0.063 7.298 40.476 34.381 LGA E 353 E 353 2.573 0 0.604 1.301 10.539 47.262 25.873 LGA E 354 E 354 6.824 0 0.150 1.196 10.447 11.905 9.101 LGA L 355 L 355 11.695 0 0.198 1.378 17.562 0.119 0.060 LGA G 356 G 356 9.246 0 0.147 0.147 9.798 1.190 1.190 LGA N 357 N 357 9.248 0 0.587 1.002 9.611 1.548 4.167 LGA I 358 I 358 11.545 0 0.587 1.109 16.734 0.000 0.000 LGA I 359 I 359 8.026 0 0.571 0.574 9.609 10.476 7.262 LGA V 360 V 360 3.926 0 0.611 0.613 5.768 42.500 39.796 LGA A 361 A 361 2.744 0 0.661 0.592 4.936 48.929 45.429 LGA W 362 W 362 3.037 0 0.597 1.124 15.080 73.929 23.878 LGA N 363 N 363 2.677 0 0.492 0.682 6.499 51.786 43.988 LGA P 364 P 364 7.734 0 0.061 0.160 10.338 12.857 8.095 LGA N 365 N 365 3.336 0 0.676 1.188 7.952 44.405 34.464 LGA L 366 L 366 3.427 0 0.572 0.632 10.335 63.095 35.298 LGA W 367 W 367 1.339 0 0.116 0.211 4.913 77.143 60.272 LGA K 368 K 368 1.249 0 0.197 0.479 5.114 88.333 64.868 LGA K 369 K 369 2.970 0 0.187 1.124 10.745 47.619 28.413 LGA G 370 G 370 2.597 0 0.055 0.055 3.361 57.500 57.500 LGA T 371 T 371 5.150 0 0.127 0.752 10.008 37.619 22.925 LGA N 372 N 372 0.975 0 0.400 1.339 6.826 75.238 51.845 LGA G 373 G 373 5.199 0 0.028 0.028 5.857 33.690 33.690 LGA Y 374 Y 374 1.353 0 0.626 0.541 4.479 71.071 57.421 LGA P 375 P 375 3.483 0 0.090 0.262 7.321 61.548 42.721 LGA I 376 I 376 1.626 0 0.250 1.043 9.091 71.071 45.179 LGA F 377 F 377 2.634 0 0.227 0.886 11.391 61.190 26.234 LGA Q 378 Q 378 2.454 0 0.624 0.712 7.666 65.119 41.429 LGA W 379 W 379 6.475 0 0.246 1.211 16.780 14.643 4.830 LGA S 380 S 380 11.006 0 0.107 0.720 12.634 0.714 0.476 LGA E 381 E 381 13.619 0 0.111 1.323 20.981 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 5.559 5.472 7.381 40.737 28.917 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 18 2.70 48.387 42.900 0.642 LGA_LOCAL RMSD: 2.705 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.141 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 5.559 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.441389 * X + 0.796988 * Y + -0.412294 * Z + 5.300892 Y_new = -0.862778 * X + -0.503199 * Y + -0.049049 * Z + -53.241589 Z_new = -0.246557 * X + 0.334068 * Y + 0.909730 * Z + 54.767822 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.043674 0.249126 0.351930 [DEG: -117.0939 14.2739 20.1641 ] ZXZ: -1.452388 0.428164 -0.635805 [DEG: -83.2157 24.5320 -36.4289 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS127_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS127_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 18 2.70 42.900 5.56 REMARK ---------------------------------------------------------- MOLECULE T0537TS127_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT 2UVF_A ATOM 2513 N SER 351 9.464 14.588 50.658 1.00 0.00 N ATOM 2514 CA SER 351 8.056 14.457 51.057 1.00 0.00 C ATOM 2515 C SER 351 7.836 14.066 52.580 1.00 0.00 C ATOM 2516 O SER 351 6.679 14.110 53.001 1.00 0.00 O ATOM 2517 CB SER 351 7.443 13.366 50.168 1.00 0.00 C ATOM 2518 OG SER 351 7.989 12.042 50.225 1.00 0.00 O ATOM 2519 N ALA 352 8.863 13.681 53.368 1.00 0.00 N ATOM 2520 CA ALA 352 8.769 13.373 54.791 1.00 0.00 C ATOM 2521 C ALA 352 8.164 14.529 55.654 1.00 0.00 C ATOM 2522 O ALA 352 7.259 14.195 56.439 1.00 0.00 O ATOM 2523 CB ALA 352 10.181 13.040 55.277 1.00 0.00 C ATOM 2524 N GLU 353 8.328 15.818 55.311 1.00 0.00 N ATOM 2525 CA GLU 353 7.830 16.897 56.123 1.00 0.00 C ATOM 2526 C GLU 353 6.483 17.378 55.572 1.00 0.00 C ATOM 2527 O GLU 353 6.395 17.749 54.391 1.00 0.00 O ATOM 2528 CB GLU 353 8.927 17.938 56.107 1.00 0.00 C ATOM 2529 CG GLU 353 9.260 18.836 54.936 1.00 0.00 C ATOM 2530 CD GLU 353 10.090 18.301 53.799 1.00 0.00 C ATOM 2531 OE1 GLU 353 10.252 17.087 53.696 1.00 0.00 O ATOM 2532 OE2 GLU 353 10.586 19.178 53.073 1.00 0.00 O ATOM 2533 N GLU 354 5.468 16.801 56.169 1.00 0.00 N ATOM 2534 CA GLU 354 4.052 16.972 55.841 1.00 0.00 C ATOM 2535 C GLU 354 3.437 18.374 56.154 1.00 0.00 C ATOM 2536 O GLU 354 3.195 19.120 55.212 1.00 0.00 O ATOM 2537 CB GLU 354 3.266 15.812 56.494 1.00 0.00 C ATOM 2538 CG GLU 354 1.770 15.802 56.179 1.00 0.00 C ATOM 2539 CD GLU 354 1.105 14.752 57.047 1.00 0.00 C ATOM 2540 OE1 GLU 354 0.702 15.144 58.165 1.00 0.00 O ATOM 2541 OE2 GLU 354 1.072 13.582 56.600 1.00 0.00 O ATOM 2542 N LEU 355 3.368 18.738 57.444 1.00 0.00 N ATOM 2543 CA LEU 355 2.743 19.952 57.966 1.00 0.00 C ATOM 2544 C LEU 355 3.734 20.968 58.667 1.00 0.00 C ATOM 2545 O LEU 355 3.246 22.041 59.059 1.00 0.00 O ATOM 2546 CB LEU 355 1.661 19.475 58.956 1.00 0.00 C ATOM 2547 CG LEU 355 0.774 20.596 59.487 1.00 0.00 C ATOM 2548 CD1 LEU 355 -0.065 21.199 58.361 1.00 0.00 C ATOM 2549 CD2 LEU 355 -0.153 20.058 60.566 1.00 0.00 C ATOM 2550 N GLY 356 5.044 20.903 58.454 1.00 0.00 N ATOM 2551 CA GLY 356 5.995 21.795 59.181 1.00 0.00 C ATOM 2552 C GLY 356 6.894 21.062 60.205 1.00 0.00 C ATOM 2553 O GLY 356 7.910 21.655 60.572 1.00 0.00 O ATOM 2554 N ASN 357 6.677 19.746 60.473 1.00 0.00 N ATOM 2555 CA ASN 357 7.386 18.935 61.424 1.00 0.00 C ATOM 2556 C ASN 357 8.800 18.867 60.927 1.00 0.00 C ATOM 2557 O ASN 357 9.144 18.273 59.877 1.00 0.00 O ATOM 2558 CB ASN 357 6.643 17.564 61.550 1.00 0.00 C ATOM 2559 CG ASN 357 7.062 16.944 62.900 1.00 0.00 C ATOM 2560 OD1 ASN 357 6.301 16.924 63.892 1.00 0.00 O ATOM 2561 ND2 ASN 357 8.263 16.399 62.968 1.00 0.00 N ATOM 2562 N ILE 358 9.708 19.097 61.922 1.00 0.00 N ATOM 2563 CA ILE 358 11.144 19.020 61.789 1.00 0.00 C ATOM 2564 C ILE 358 11.635 17.555 61.689 1.00 0.00 C ATOM 2565 O ILE 358 11.385 16.747 62.592 1.00 0.00 O ATOM 2566 CB ILE 358 11.729 19.728 63.031 1.00 0.00 C ATOM 2567 CG1 ILE 358 13.263 19.560 63.091 1.00 0.00 C ATOM 2568 CG2 ILE 358 11.106 19.255 64.366 1.00 0.00 C ATOM 2569 CD1 ILE 358 13.889 19.830 64.469 1.00 0.00 C ATOM 2570 N ILE 359 12.183 17.177 60.507 1.00 0.00 N ATOM 2571 CA ILE 359 12.628 15.792 60.285 1.00 0.00 C ATOM 2572 C ILE 359 14.144 15.728 59.977 1.00 0.00 C ATOM 2573 O ILE 359 14.599 16.065 58.883 1.00 0.00 O ATOM 2574 CB ILE 359 11.717 15.121 59.208 1.00 0.00 C ATOM 2575 CG1 ILE 359 10.250 15.182 59.657 1.00 0.00 C ATOM 2576 CG2 ILE 359 12.291 13.727 58.803 1.00 0.00 C ATOM 2577 CD1 ILE 359 9.278 14.735 58.507 1.00 0.00 C ATOM 2578 N VAL 360 14.806 14.980 60.851 1.00 0.00 N ATOM 2579 CA VAL 360 16.217 14.651 60.804 1.00 0.00 C ATOM 2580 C VAL 360 16.539 13.795 59.550 1.00 0.00 C ATOM 2581 O VAL 360 15.686 13.052 59.063 1.00 0.00 O ATOM 2582 CB VAL 360 16.575 13.911 62.100 1.00 0.00 C ATOM 2583 CG1 VAL 360 18.015 13.401 62.085 1.00 0.00 C ATOM 2584 CG2 VAL 360 16.405 14.730 63.366 1.00 0.00 C ATOM 2585 N ALA 361 17.583 14.204 58.837 1.00 0.00 N ATOM 2586 CA ALA 361 18.094 13.583 57.621 1.00 0.00 C ATOM 2587 C ALA 361 19.623 13.382 57.781 1.00 0.00 C ATOM 2588 O ALA 361 20.320 14.374 58.002 1.00 0.00 O ATOM 2589 CB ALA 361 17.736 14.477 56.429 1.00 0.00 C ATOM 2590 N TRP 362 20.161 12.270 57.301 1.00 0.00 N ATOM 2591 CA TRP 362 21.574 12.042 57.544 1.00 0.00 C ATOM 2592 C TRP 362 22.510 11.872 56.308 1.00 0.00 C ATOM 2593 O TRP 362 22.347 10.919 55.529 1.00 0.00 O ATOM 2594 CB TRP 362 21.792 10.795 58.421 1.00 0.00 C ATOM 2595 CG TRP 362 21.375 10.859 59.845 1.00 0.00 C ATOM 2596 CD1 TRP 362 20.275 10.301 60.379 1.00 0.00 C ATOM 2597 CD2 TRP 362 22.080 11.495 60.943 1.00 0.00 C ATOM 2598 NE1 TRP 362 20.233 10.557 61.737 1.00 0.00 N ATOM 2599 CE2 TRP 362 21.328 11.295 62.143 1.00 0.00 C ATOM 2600 CE3 TRP 362 23.273 12.255 61.048 1.00 0.00 C ATOM 2601 CZ2 TRP 362 21.739 11.812 63.395 1.00 0.00 C ATOM 2602 CZ3 TRP 362 23.704 12.763 62.288 1.00 0.00 C ATOM 2603 CH2 TRP 362 22.941 12.543 63.450 1.00 0.00 H ATOM 2604 N ASN 363 23.227 12.937 55.981 1.00 0.00 N ATOM 2605 CA ASN 363 24.330 12.906 54.974 1.00 0.00 C ATOM 2606 C ASN 363 25.598 12.499 55.903 1.00 0.00 C ATOM 2607 O ASN 363 25.322 11.619 56.778 1.00 0.00 O ATOM 2608 CB ASN 363 24.419 14.253 54.286 1.00 0.00 C ATOM 2609 CG ASN 363 25.172 14.347 52.989 1.00 0.00 C ATOM 2610 OD1 ASN 363 25.461 13.340 52.369 1.00 0.00 O ATOM 2611 ND2 ASN 363 25.555 15.526 52.509 1.00 0.00 N ATOM 2612 N PRO 364 26.980 12.489 55.624 1.00 0.00 N ATOM 2613 CA PRO 364 27.876 12.197 56.733 1.00 0.00 C ATOM 2614 C PRO 364 27.591 13.118 57.960 1.00 0.00 C ATOM 2615 O PRO 364 27.909 12.663 59.051 1.00 0.00 O ATOM 2616 CB PRO 364 29.354 12.249 56.350 1.00 0.00 C ATOM 2617 CG PRO 364 29.219 12.568 54.844 1.00 0.00 C ATOM 2618 CD PRO 364 27.813 13.031 54.501 1.00 0.00 C ATOM 2619 N ASN 365 26.887 14.256 57.821 1.00 0.00 N ATOM 2620 CA ASN 365 26.523 15.177 58.891 1.00 0.00 C ATOM 2621 C ASN 365 24.977 15.318 59.081 1.00 0.00 C ATOM 2622 O ASN 365 24.199 14.848 58.245 1.00 0.00 O ATOM 2623 CB ASN 365 27.119 16.518 58.471 1.00 0.00 C ATOM 2624 CG ASN 365 28.591 16.457 58.073 1.00 0.00 C ATOM 2625 OD1 ASN 365 28.900 16.259 56.897 1.00 0.00 O ATOM 2626 ND2 ASN 365 29.547 16.416 58.988 1.00 0.00 N ATOM 2627 N LEU 366 24.578 15.661 60.299 1.00 0.00 N ATOM 2628 CA LEU 366 23.198 15.922 60.731 1.00 0.00 C ATOM 2629 C LEU 366 22.545 17.088 59.932 1.00 0.00 C ATOM 2630 O LEU 366 23.217 18.058 59.556 1.00 0.00 O ATOM 2631 CB LEU 366 23.265 16.203 62.240 1.00 0.00 C ATOM 2632 CG LEU 366 21.933 16.338 62.953 1.00 0.00 C ATOM 2633 CD1 LEU 366 21.220 14.973 62.942 1.00 0.00 C ATOM 2634 CD2 LEU 366 22.207 16.758 64.396 1.00 0.00 C ATOM 2635 N TRP 367 21.343 16.787 59.422 1.00 0.00 N ATOM 2636 CA TRP 367 20.520 17.725 58.650 1.00 0.00 C ATOM 2637 C TRP 367 19.016 17.625 59.045 1.00 0.00 C ATOM 2638 O TRP 367 18.657 16.845 59.942 1.00 0.00 O ATOM 2639 CB TRP 367 20.715 17.302 57.181 1.00 0.00 C ATOM 2640 CG TRP 367 22.024 17.597 56.523 1.00 0.00 C ATOM 2641 CD1 TRP 367 23.135 16.853 56.683 1.00 0.00 C ATOM 2642 CD2 TRP 367 22.418 18.747 55.715 1.00 0.00 C ATOM 2643 NE1 TRP 367 24.178 17.435 55.995 1.00 0.00 N ATOM 2644 CE2 TRP 367 23.796 18.604 55.373 1.00 0.00 C ATOM 2645 CE3 TRP 367 21.766 19.918 55.259 1.00 0.00 C ATOM 2646 CZ2 TRP 367 24.496 19.557 54.600 1.00 0.00 C ATOM 2647 CZ3 TRP 367 22.429 20.867 54.455 1.00 0.00 C ATOM 2648 CH2 TRP 367 23.787 20.685 54.135 1.00 0.00 H ATOM 2649 N LYS 368 18.315 18.709 58.762 1.00 0.00 N ATOM 2650 CA LYS 368 16.898 18.798 59.039 1.00 0.00 C ATOM 2651 C LYS 368 16.150 19.391 57.869 1.00 0.00 C ATOM 2652 O LYS 368 16.339 20.580 57.578 1.00 0.00 O ATOM 2653 CB LYS 368 16.780 19.712 60.257 1.00 0.00 C ATOM 2654 CG LYS 368 15.554 20.589 60.344 1.00 0.00 C ATOM 2655 CD LYS 368 15.641 21.539 61.559 1.00 0.00 C ATOM 2656 CE LYS 368 14.507 22.561 61.764 1.00 0.00 C ATOM 2657 NZ LYS 368 14.490 23.131 63.142 1.00 0.00 N ATOM 2658 N LYS 369 15.353 18.615 57.168 1.00 0.00 N ATOM 2659 CA LYS 369 14.577 19.212 56.104 1.00 0.00 C ATOM 2660 C LYS 369 13.215 19.645 56.685 1.00 0.00 C ATOM 2661 O LYS 369 12.315 18.821 56.892 1.00 0.00 O ATOM 2662 CB LYS 369 14.519 18.287 54.905 1.00 0.00 C ATOM 2663 CG LYS 369 13.548 18.678 53.833 1.00 0.00 C ATOM 2664 CD LYS 369 13.651 17.777 52.598 1.00 0.00 C ATOM 2665 CE LYS 369 13.102 18.418 51.331 1.00 0.00 C ATOM 2666 NZ LYS 369 13.874 19.638 50.960 1.00 0.00 N ATOM 2667 N GLY 370 13.096 20.951 56.963 1.00 0.00 N ATOM 2668 CA GLY 370 11.911 21.582 57.525 1.00 0.00 C ATOM 2669 C GLY 370 10.776 21.715 56.472 1.00 0.00 C ATOM 2670 O GLY 370 11.008 21.544 55.273 1.00 0.00 O ATOM 2671 N THR 371 9.574 21.977 56.986 1.00 0.00 N ATOM 2672 CA THR 371 8.439 22.118 56.062 1.00 0.00 C ATOM 2673 C THR 371 7.860 23.560 55.887 1.00 0.00 C ATOM 2674 O THR 371 7.034 23.699 54.974 1.00 0.00 O ATOM 2675 CB THR 371 7.263 21.218 56.365 1.00 0.00 C ATOM 2676 OG1 THR 371 7.434 20.177 57.300 1.00 0.00 O ATOM 2677 CG2 THR 371 6.732 20.539 55.094 1.00 0.00 C ATOM 2678 N ASN 372 8.213 24.567 56.710 1.00 0.00 N ATOM 2679 CA ASN 372 7.694 25.883 56.399 1.00 0.00 C ATOM 2680 C ASN 372 8.129 26.183 54.935 1.00 0.00 C ATOM 2681 O ASN 372 7.234 26.361 54.109 1.00 0.00 O ATOM 2682 CB ASN 372 8.141 26.949 57.407 1.00 0.00 C ATOM 2683 CG ASN 372 7.788 26.769 58.848 1.00 0.00 C ATOM 2684 OD1 ASN 372 6.683 26.393 59.191 1.00 0.00 O ATOM 2685 ND2 ASN 372 8.706 27.020 59.774 1.00 0.00 N ATOM 2686 N GLY 373 9.414 26.454 54.648 1.00 0.00 N ATOM 2687 CA GLY 373 9.994 26.659 53.314 1.00 0.00 C ATOM 2688 C GLY 373 10.462 25.352 52.611 1.00 0.00 C ATOM 2689 O GLY 373 10.643 25.428 51.395 1.00 0.00 O ATOM 2690 N TYR 374 10.490 24.192 53.302 1.00 0.00 N ATOM 2691 CA TYR 374 10.899 22.940 52.826 1.00 0.00 C ATOM 2692 C TYR 374 12.383 22.703 52.559 1.00 0.00 C ATOM 2693 O TYR 374 12.653 21.556 52.274 1.00 0.00 O ATOM 2694 CB TYR 374 10.102 22.622 51.529 1.00 0.00 C ATOM 2695 CG TYR 374 8.590 22.691 51.496 1.00 0.00 C ATOM 2696 CD1 TYR 374 7.839 21.503 51.607 1.00 0.00 C ATOM 2697 CD2 TYR 374 7.970 23.855 50.994 1.00 0.00 C ATOM 2698 CE1 TYR 374 6.478 21.485 51.254 1.00 0.00 C ATOM 2699 CE2 TYR 374 6.600 23.840 50.625 1.00 0.00 C ATOM 2700 CZ TYR 374 5.861 22.635 50.731 1.00 0.00 C ATOM 2701 OH TYR 374 4.573 22.533 50.280 1.00 0.00 H ATOM 2702 N PRO 375 13.407 23.640 52.649 1.00 0.00 N ATOM 2703 CA PRO 375 14.744 23.238 52.299 1.00 0.00 C ATOM 2704 C PRO 375 15.350 22.502 53.544 1.00 0.00 C ATOM 2705 O PRO 375 14.815 22.562 54.654 1.00 0.00 O ATOM 2706 CB PRO 375 15.656 24.492 52.045 1.00 0.00 C ATOM 2707 CG PRO 375 14.738 25.656 52.518 1.00 0.00 C ATOM 2708 CD PRO 375 13.320 25.168 52.680 1.00 0.00 C ATOM 2709 N ILE 376 16.618 22.114 53.348 1.00 0.00 N ATOM 2710 CA ILE 376 17.458 21.446 54.301 1.00 0.00 C ATOM 2711 C ILE 376 18.453 22.379 55.068 1.00 0.00 C ATOM 2712 O ILE 376 19.224 23.151 54.479 1.00 0.00 O ATOM 2713 CB ILE 376 18.249 20.381 53.511 1.00 0.00 C ATOM 2714 CG1 ILE 376 17.383 19.401 52.707 1.00 0.00 C ATOM 2715 CG2 ILE 376 19.100 19.522 54.519 1.00 0.00 C ATOM 2716 CD1 ILE 376 18.193 18.454 51.816 1.00 0.00 C ATOM 2717 N PHE 377 18.386 22.236 56.388 1.00 0.00 N ATOM 2718 CA PHE 377 19.190 22.937 57.384 1.00 0.00 C ATOM 2719 C PHE 377 20.215 21.982 58.049 1.00 0.00 C ATOM 2720 O PHE 377 19.855 21.160 58.897 1.00 0.00 O ATOM 2721 CB PHE 377 18.243 23.532 58.427 1.00 0.00 C ATOM 2722 CG PHE 377 17.188 24.486 57.993 1.00 0.00 C ATOM 2723 CD1 PHE 377 17.436 25.877 57.988 1.00 0.00 C ATOM 2724 CD2 PHE 377 15.935 23.997 57.562 1.00 0.00 C ATOM 2725 CE1 PHE 377 16.430 26.776 57.567 1.00 0.00 C ATOM 2726 CE2 PHE 377 14.936 24.895 57.128 1.00 0.00 C ATOM 2727 CZ PHE 377 15.184 26.284 57.127 1.00 0.00 C ATOM 2728 N GLN 378 21.508 22.276 57.868 1.00 0.00 N ATOM 2729 CA GLN 378 22.639 21.525 58.431 1.00 0.00 C ATOM 2730 C GLN 378 22.716 21.740 59.965 1.00 0.00 C ATOM 2731 O GLN 378 22.912 22.871 60.426 1.00 0.00 O ATOM 2732 CB GLN 378 23.962 22.041 57.814 1.00 0.00 C ATOM 2733 CG GLN 378 25.123 21.099 58.186 1.00 0.00 C ATOM 2734 CD GLN 378 26.388 21.562 57.484 1.00 0.00 C ATOM 2735 OE1 GLN 378 27.349 21.921 58.153 1.00 0.00 O ATOM 2736 NE2 GLN 378 26.317 21.537 56.156 1.00 0.00 N ATOM 2737 N TRP 379 22.497 20.679 60.730 1.00 0.00 N ATOM 2738 CA TRP 379 22.632 20.742 62.187 1.00 0.00 C ATOM 2739 C TRP 379 24.120 20.649 62.679 1.00 0.00 C ATOM 2740 O TRP 379 24.447 21.460 63.552 1.00 0.00 O ATOM 2741 CB TRP 379 21.756 19.739 62.913 1.00 0.00 C ATOM 2742 CG TRP 379 20.311 19.988 63.028 1.00 0.00 C ATOM 2743 CD1 TRP 379 19.737 21.194 62.860 1.00 0.00 C ATOM 2744 CD2 TRP 379 19.329 19.149 63.695 1.00 0.00 C ATOM 2745 NE1 TRP 379 18.465 21.161 63.391 1.00 0.00 N ATOM 2746 CE2 TRP 379 18.202 19.962 64.012 1.00 0.00 C ATOM 2747 CE3 TRP 379 19.328 17.817 64.173 1.00 0.00 C ATOM 2748 CZ2 TRP 379 17.148 19.506 64.815 1.00 0.00 C ATOM 2749 CZ3 TRP 379 18.267 17.320 64.950 1.00 0.00 C ATOM 2750 CH2 TRP 379 17.195 18.174 65.278 1.00 0.00 H ATOM 2751 N SER 380 24.944 19.682 62.222 1.00 0.00 N ATOM 2752 CA SER 380 26.303 19.564 62.660 1.00 0.00 C ATOM 2753 C SER 380 27.295 20.361 61.746 1.00 0.00 C ATOM 2754 O SER 380 27.368 20.111 60.535 1.00 0.00 O ATOM 2755 CB SER 380 26.673 18.081 62.769 1.00 0.00 C ATOM 2756 OG SER 380 26.653 17.344 61.553 1.00 0.00 O ATOM 2757 N GLU 381 28.284 20.922 62.461 1.00 0.00 N ATOM 2758 CA GLU 381 29.417 21.681 61.941 1.00 0.00 C ATOM 2759 C GLU 381 30.041 20.949 60.719 1.00 0.00 C ATOM 2760 O GLU 381 30.554 19.832 60.789 1.00 0.00 O ATOM 2761 CB GLU 381 30.484 21.863 63.082 1.00 0.00 C ATOM 2762 CG GLU 381 31.144 20.601 63.754 1.00 0.00 C ATOM 2763 CD GLU 381 30.268 19.733 64.683 1.00 0.00 C ATOM 2764 OE1 GLU 381 29.139 20.182 64.997 1.00 0.00 O ATOM 2765 OE2 GLU 381 30.739 18.679 65.172 1.00 0.00 O ATOM 2766 OXT GLU 381 29.975 21.570 59.638 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.11 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 102.30 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 86.45 36.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 95.98 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.79 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 82.39 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 81.60 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 85.57 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 20.83 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.70 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 56.72 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 86.51 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 69.03 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 35.84 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 57.85 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 51.46 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 61.20 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 57.85 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.91 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 84.91 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 84.91 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.56 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.56 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.1793 CRMSCA SECONDARY STRUCTURE . . 5.91 11 100.0 11 CRMSCA SURFACE . . . . . . . . 5.66 26 100.0 26 CRMSCA BURIED . . . . . . . . 4.97 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 5.81 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.10 54 100.0 54 CRMSMC SURFACE . . . . . . . . 5.97 129 100.0 129 CRMSMC BURIED . . . . . . . . 4.84 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.90 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 8.97 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.99 41 100.0 41 CRMSSC SURFACE . . . . . . . . 9.11 120 100.0 120 CRMSSC BURIED . . . . . . . . 5.83 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.43 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.54 85 100.0 85 CRMSALL SURFACE . . . . . . . . 7.68 224 100.0 224 CRMSALL BURIED . . . . . . . . 5.16 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.946 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.473 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 4.990 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 4.716 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.099 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.580 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 5.211 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 4.472 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.106 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 8.139 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 8.148 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 8.314 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 5.619 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.493 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 6.715 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 6.719 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 4.805 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 3 8 17 30 31 31 DISTCA CA (P) 3.23 9.68 25.81 54.84 96.77 31 DISTCA CA (RMS) 0.68 1.42 2.12 3.23 5.32 DISTCA ALL (N) 7 18 42 103 208 254 254 DISTALL ALL (P) 2.76 7.09 16.54 40.55 81.89 254 DISTALL ALL (RMS) 0.79 1.35 2.14 3.39 5.67 DISTALL END of the results output