####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS119_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS119_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 355 - 371 4.95 9.68 LCS_AVERAGE: 49.01 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 1.47 11.75 LCS_AVERAGE: 17.59 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.93 16.65 LONGEST_CONTINUOUS_SEGMENT: 4 366 - 369 0.88 12.28 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.81 12.78 LONGEST_CONTINUOUS_SEGMENT: 4 374 - 377 0.62 11.25 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.49 11.35 LCS_AVERAGE: 11.13 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 9 0 3 3 3 3 8 8 10 13 14 14 16 18 19 20 22 25 28 29 30 LCS_GDT A 352 A 352 3 3 9 1 3 3 5 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT E 353 E 353 3 3 12 0 3 5 5 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT E 354 E 354 3 4 12 0 3 3 4 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT L 355 L 355 3 4 17 0 3 3 4 4 8 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT G 356 G 356 3 4 17 0 3 3 4 4 7 8 12 12 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT N 357 N 357 3 4 17 3 3 3 4 4 5 7 12 12 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT I 358 I 358 3 5 17 3 3 3 4 5 5 7 12 12 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT I 359 I 359 3 5 17 3 3 3 4 6 7 8 12 12 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT V 360 V 360 3 5 17 3 3 3 5 7 7 8 8 11 14 15 15 18 19 21 24 25 28 29 30 LCS_GDT A 361 A 361 3 5 17 3 3 4 4 6 7 8 9 11 14 15 16 18 19 21 24 25 28 29 30 LCS_GDT W 362 W 362 4 5 17 3 3 4 5 5 6 7 9 10 14 15 15 18 19 21 24 25 28 29 30 LCS_GDT N 363 N 363 4 5 17 3 3 4 5 5 6 7 9 11 13 15 16 18 19 21 24 25 28 29 30 LCS_GDT P 364 P 364 4 5 17 3 3 4 5 5 6 8 9 11 13 15 16 18 19 21 24 25 28 29 30 LCS_GDT N 365 N 365 4 6 17 3 3 4 5 6 8 9 9 11 13 15 16 18 19 21 24 24 28 29 30 LCS_GDT L 366 L 366 4 6 17 3 3 4 5 6 8 9 9 11 13 15 16 18 19 21 24 24 28 29 30 LCS_GDT W 367 W 367 4 6 17 3 3 4 5 6 8 9 9 11 13 15 16 18 19 21 24 24 28 29 30 LCS_GDT K 368 K 368 4 6 17 3 3 4 5 5 7 9 9 11 12 14 16 18 18 21 23 24 24 25 27 LCS_GDT K 369 K 369 4 6 17 1 3 4 5 6 8 9 9 11 13 15 16 18 18 21 23 24 26 28 30 LCS_GDT G 370 G 370 3 6 17 0 3 3 5 6 8 9 9 11 13 15 16 18 19 21 24 25 28 29 30 LCS_GDT T 371 T 371 3 6 17 3 3 3 4 5 8 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT N 372 N 372 3 7 15 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT G 373 G 373 4 7 15 3 3 5 6 7 7 8 10 12 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT Y 374 Y 374 4 7 15 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT P 375 P 375 4 7 15 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT I 376 I 376 4 7 15 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT F 377 F 377 4 7 13 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 23 25 28 29 30 LCS_GDT Q 378 Q 378 4 7 13 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 LCS_GDT W 379 W 379 3 6 13 3 3 3 5 7 8 11 12 13 14 17 17 18 19 21 23 25 28 29 30 LCS_GDT S 380 S 380 3 6 13 3 3 3 5 7 7 8 12 12 14 15 15 18 19 21 23 24 27 29 30 LCS_GDT E 381 E 381 3 6 13 3 3 3 5 7 7 8 12 12 14 15 15 18 19 21 23 25 28 29 30 LCS_AVERAGE LCS_A: 25.91 ( 11.13 17.59 49.01 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 8 9 11 12 13 14 17 17 18 19 21 24 25 28 29 30 GDT PERCENT_AT 9.68 12.90 16.13 19.35 25.81 29.03 35.48 38.71 41.94 45.16 54.84 54.84 58.06 61.29 67.74 77.42 80.65 90.32 93.55 96.77 GDT RMS_LOCAL 0.05 0.49 0.78 1.05 1.88 2.05 2.52 2.72 3.00 3.19 4.07 4.07 4.36 4.62 5.35 6.15 6.34 6.88 6.97 7.13 GDT RMS_ALL_AT 13.11 11.35 11.42 11.37 10.04 9.87 10.01 10.15 10.24 10.27 9.19 9.19 9.28 9.23 9.13 7.89 7.64 7.39 7.41 7.37 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 6.026 0 0.440 0.737 8.460 19.881 19.841 LGA A 352 A 352 2.744 0 0.629 0.601 3.818 52.143 56.286 LGA E 353 E 353 1.731 0 0.617 0.912 6.112 65.595 49.735 LGA E 354 E 354 3.454 0 0.615 1.012 10.053 61.071 30.476 LGA L 355 L 355 3.300 0 0.647 0.700 8.992 55.476 33.929 LGA G 356 G 356 6.561 0 0.599 0.599 6.561 24.524 24.524 LGA N 357 N 357 8.301 0 0.587 0.707 10.903 4.881 2.560 LGA I 358 I 358 9.411 0 0.628 0.654 10.274 2.143 1.190 LGA I 359 I 359 8.995 0 0.537 1.469 11.665 1.071 2.440 LGA V 360 V 360 13.631 0 0.297 0.327 17.588 0.000 0.000 LGA A 361 A 361 16.812 0 0.664 0.595 17.459 0.000 0.000 LGA W 362 W 362 17.266 0 0.058 1.522 22.297 0.000 0.000 LGA N 363 N 363 18.311 0 0.266 1.053 21.384 0.000 0.000 LGA P 364 P 364 17.170 0 0.706 0.767 21.188 0.000 0.000 LGA N 365 N 365 17.242 0 0.715 0.604 19.445 0.000 0.000 LGA L 366 L 366 16.702 0 0.608 0.587 19.787 0.000 0.000 LGA W 367 W 367 14.513 0 0.068 1.243 16.874 0.000 0.000 LGA K 368 K 368 14.819 0 0.668 1.152 16.499 0.000 0.000 LGA K 369 K 369 10.406 0 0.064 0.805 16.127 1.071 0.476 LGA G 370 G 370 8.123 0 0.604 0.604 8.123 12.262 12.262 LGA T 371 T 371 3.207 0 0.621 0.586 5.427 53.690 46.871 LGA N 372 N 372 2.938 0 0.265 1.245 5.710 48.333 38.095 LGA G 373 G 373 5.608 0 0.682 0.682 5.608 33.214 33.214 LGA Y 374 Y 374 2.371 0 0.177 1.223 7.167 63.095 45.595 LGA P 375 P 375 1.212 0 0.210 0.232 2.209 77.262 76.599 LGA I 376 I 376 1.398 0 0.157 0.260 3.034 83.690 72.381 LGA F 377 F 377 2.095 0 0.150 1.136 4.933 57.500 55.325 LGA Q 378 Q 378 2.929 0 0.648 1.332 9.819 61.190 32.011 LGA W 379 W 379 3.817 0 0.634 1.286 11.390 39.881 18.639 LGA S 380 S 380 7.744 0 0.112 0.680 9.567 9.762 7.381 LGA E 381 E 381 10.889 0 0.105 0.695 14.017 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.358 7.224 8.847 26.701 21.285 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.72 37.097 32.113 0.425 LGA_LOCAL RMSD: 2.721 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.150 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.358 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.862172 * X + -0.394531 * Y + 0.317813 * Z + 1.881476 Y_new = -0.503915 * X + -0.732526 * Y + 0.457685 * Z + -4.903092 Z_new = 0.052235 * X + -0.554754 * Y + -0.830373 * Z + 72.751053 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.528924 -0.052259 -2.552614 [DEG: -30.3051 -2.9942 -146.2540 ] ZXZ: 2.534641 2.550574 3.047710 [DEG: 145.2242 146.1371 174.6209 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS119_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS119_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.72 32.113 7.36 REMARK ---------------------------------------------------------- MOLECULE T0537TS119_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 3113 N SER 351 -0.318 17.170 53.801 1.00 50.00 N ATOM 3114 CA SER 351 0.207 15.842 53.730 1.00 50.00 C ATOM 3115 C SER 351 1.493 15.846 52.972 1.00 50.00 C ATOM 3116 O SER 351 1.631 15.153 51.965 1.00 50.00 O ATOM 3117 H SER 351 -0.587 17.506 54.592 1.00 50.00 H ATOM 3118 CB SER 351 -0.806 14.900 53.077 1.00 50.00 C ATOM 3119 HG SER 351 -2.533 14.313 53.463 1.00 50.00 H ATOM 3120 OG SER 351 -2.000 14.829 53.836 1.00 50.00 O ATOM 3121 N ALA 352 2.470 16.652 53.430 1.00 50.00 N ATOM 3122 CA ALA 352 3.747 16.659 52.786 1.00 50.00 C ATOM 3123 C ALA 352 4.654 15.863 53.660 1.00 50.00 C ATOM 3124 O ALA 352 4.723 16.075 54.869 1.00 50.00 O ATOM 3125 H ALA 352 2.320 17.184 54.140 1.00 50.00 H ATOM 3126 CB ALA 352 4.229 18.086 52.581 1.00 50.00 C ATOM 3127 N GLU 353 5.373 14.900 53.066 1.00 50.00 N ATOM 3128 CA GLU 353 6.242 14.106 53.873 1.00 50.00 C ATOM 3129 C GLU 353 7.598 14.210 53.275 1.00 50.00 C ATOM 3130 O GLU 353 7.749 14.199 52.054 1.00 50.00 O ATOM 3131 H GLU 353 5.318 14.749 52.180 1.00 50.00 H ATOM 3132 CB GLU 353 5.742 12.661 53.935 1.00 50.00 C ATOM 3133 CD GLU 353 3.930 11.056 54.657 1.00 50.00 C ATOM 3134 CG GLU 353 4.388 12.501 54.605 1.00 50.00 C ATOM 3135 OE1 GLU 353 4.625 10.193 54.081 1.00 50.00 O ATOM 3136 OE2 GLU 353 2.879 10.788 55.274 1.00 50.00 O ATOM 3137 N GLU 354 8.632 14.337 54.128 1.00 50.00 N ATOM 3138 CA GLU 354 9.942 14.419 53.562 1.00 50.00 C ATOM 3139 C GLU 354 10.865 13.517 54.312 1.00 50.00 C ATOM 3140 O GLU 354 10.877 13.489 55.542 1.00 50.00 O ATOM 3141 H GLU 354 8.524 14.372 55.020 1.00 50.00 H ATOM 3142 CB GLU 354 10.448 15.862 53.588 1.00 50.00 C ATOM 3143 CD GLU 354 9.793 16.593 51.261 1.00 50.00 C ATOM 3144 CG GLU 354 9.622 16.824 52.750 1.00 50.00 C ATOM 3145 OE1 GLU 354 10.812 15.991 50.866 1.00 50.00 O ATOM 3146 OE2 GLU 354 8.906 17.016 50.489 1.00 50.00 O ATOM 3147 N LEU 355 11.646 12.728 53.549 1.00 50.00 N ATOM 3148 CA LEU 355 12.642 11.842 54.076 1.00 50.00 C ATOM 3149 C LEU 355 13.781 11.909 53.105 1.00 50.00 C ATOM 3150 O LEU 355 13.576 12.219 51.932 1.00 50.00 O ATOM 3151 H LEU 355 11.513 12.778 52.661 1.00 50.00 H ATOM 3152 CB LEU 355 12.073 10.432 54.241 1.00 50.00 C ATOM 3153 CG LEU 355 10.921 10.278 55.236 1.00 50.00 C ATOM 3154 CD1 LEU 355 10.317 8.884 55.149 1.00 50.00 C ATOM 3155 CD2 LEU 355 11.394 10.561 56.654 1.00 50.00 C ATOM 3156 N GLY 356 15.016 11.630 53.565 1.00 50.00 N ATOM 3157 CA GLY 356 16.131 11.615 52.658 1.00 50.00 C ATOM 3158 C GLY 356 16.801 12.948 52.695 1.00 50.00 C ATOM 3159 O GLY 356 16.237 13.922 53.189 1.00 50.00 O ATOM 3160 H GLY 356 15.144 11.453 54.437 1.00 50.00 H ATOM 3161 N ASN 357 18.030 13.027 52.139 1.00 50.00 N ATOM 3162 CA ASN 357 18.763 14.255 52.238 1.00 50.00 C ATOM 3163 C ASN 357 19.293 14.656 50.889 1.00 50.00 C ATOM 3164 O ASN 357 19.610 13.815 50.050 1.00 50.00 O ATOM 3165 H ASN 357 18.389 12.322 51.712 1.00 50.00 H ATOM 3166 CB ASN 357 19.896 14.123 53.257 1.00 50.00 C ATOM 3167 CG ASN 357 19.387 13.900 54.668 1.00 50.00 C ATOM 3168 OD1 ASN 357 18.985 14.842 55.349 1.00 50.00 O ATOM 3169 HD21 ASN 357 19.113 12.460 55.942 1.00 50.00 H ATOM 3170 HD22 ASN 357 19.706 11.987 54.580 1.00 50.00 H ATOM 3171 ND2 ASN 357 19.404 12.647 55.110 1.00 50.00 N ATOM 3172 N ILE 358 19.387 15.985 50.664 1.00 50.00 N ATOM 3173 CA ILE 358 19.899 16.590 49.463 1.00 50.00 C ATOM 3174 C ILE 358 21.043 17.432 49.938 1.00 50.00 C ATOM 3175 O ILE 358 20.955 18.041 51.002 1.00 50.00 O ATOM 3176 H ILE 358 19.097 16.504 51.340 1.00 50.00 H ATOM 3177 CB ILE 358 18.808 17.388 48.724 1.00 50.00 C ATOM 3178 CD1 ILE 358 16.449 17.196 47.778 1.00 50.00 C ATOM 3179 CG1 ILE 358 17.666 16.464 48.298 1.00 50.00 C ATOM 3180 CG2 ILE 358 19.404 18.134 47.540 1.00 50.00 C ATOM 3181 N ILE 359 22.158 17.496 49.186 1.00 50.00 N ATOM 3182 CA ILE 359 23.259 18.255 49.711 1.00 50.00 C ATOM 3183 C ILE 359 23.977 19.005 48.633 1.00 50.00 C ATOM 3184 O ILE 359 23.696 18.864 47.444 1.00 50.00 O ATOM 3185 H ILE 359 22.233 17.089 48.387 1.00 50.00 H ATOM 3186 CB ILE 359 24.257 17.355 50.464 1.00 50.00 C ATOM 3187 CD1 ILE 359 25.989 15.517 50.124 1.00 50.00 C ATOM 3188 CG1 ILE 359 24.854 16.312 49.518 1.00 50.00 C ATOM 3189 CG2 ILE 359 23.588 16.710 51.668 1.00 50.00 C ATOM 3190 N VAL 360 24.951 19.829 49.082 1.00 50.00 N ATOM 3191 CA VAL 360 25.857 20.604 48.280 1.00 50.00 C ATOM 3192 C VAL 360 25.154 21.775 47.633 1.00 50.00 C ATOM 3193 O VAL 360 25.613 22.335 46.640 1.00 50.00 O ATOM 3194 H VAL 360 25.002 19.865 49.981 1.00 50.00 H ATOM 3195 CB VAL 360 26.530 19.742 47.196 1.00 50.00 C ATOM 3196 CG1 VAL 360 27.397 20.604 46.291 1.00 50.00 C ATOM 3197 CG2 VAL 360 27.355 18.634 47.833 1.00 50.00 C ATOM 3198 N ALA 361 24.024 22.238 48.197 1.00 50.00 N ATOM 3199 CA ALA 361 23.473 23.428 47.614 1.00 50.00 C ATOM 3200 C ALA 361 24.111 24.567 48.350 1.00 50.00 C ATOM 3201 O ALA 361 24.003 24.668 49.569 1.00 50.00 O ATOM 3202 H ALA 361 23.614 21.849 48.898 1.00 50.00 H ATOM 3203 CB ALA 361 21.956 23.421 47.727 1.00 50.00 C ATOM 3204 N TRP 362 24.837 25.440 47.627 1.00 50.00 N ATOM 3205 CA TRP 362 25.473 26.560 48.267 1.00 50.00 C ATOM 3206 C TRP 362 24.460 27.528 48.776 1.00 50.00 C ATOM 3207 O TRP 362 24.557 27.982 49.916 1.00 50.00 O ATOM 3208 H TRP 362 24.924 25.320 46.739 1.00 50.00 H ATOM 3209 CB TRP 362 26.429 27.259 47.298 1.00 50.00 C ATOM 3210 HB2 TRP 362 25.921 27.882 46.647 1.00 50.00 H ATOM 3211 HB3 TRP 362 27.263 26.755 47.071 1.00 50.00 H ATOM 3212 CG TRP 362 27.146 28.428 47.901 1.00 50.00 C ATOM 3213 CD1 TRP 362 26.787 29.742 47.815 1.00 50.00 C ATOM 3214 HE1 TRP 362 27.641 31.458 48.571 1.00 50.00 H ATOM 3215 NE1 TRP 362 27.687 30.526 48.495 1.00 50.00 N ATOM 3216 CD2 TRP 362 28.344 28.389 48.685 1.00 50.00 C ATOM 3217 CE2 TRP 362 28.654 29.715 49.040 1.00 50.00 C ATOM 3218 CH2 TRP 362 30.573 29.018 50.224 1.00 50.00 C ATOM 3219 CZ2 TRP 362 29.768 30.042 49.809 1.00 50.00 C ATOM 3220 CE3 TRP 362 29.186 27.361 49.123 1.00 50.00 C ATOM 3221 CZ3 TRP 362 30.289 27.690 49.886 1.00 50.00 C ATOM 3222 N ASN 363 23.454 27.876 47.951 1.00 50.00 N ATOM 3223 CA ASN 363 22.528 28.866 48.413 1.00 50.00 C ATOM 3224 C ASN 363 21.598 28.211 49.370 1.00 50.00 C ATOM 3225 O ASN 363 21.354 27.007 49.310 1.00 50.00 O ATOM 3226 H ASN 363 23.351 27.510 47.135 1.00 50.00 H ATOM 3227 CB ASN 363 21.794 29.505 47.233 1.00 50.00 C ATOM 3228 CG ASN 363 22.706 30.357 46.372 1.00 50.00 C ATOM 3229 OD1 ASN 363 23.454 31.192 46.880 1.00 50.00 O ATOM 3230 HD21 ASN 363 23.167 30.627 44.505 1.00 50.00 H ATOM 3231 HD22 ASN 363 22.085 29.527 44.731 1.00 50.00 H ATOM 3232 ND2 ASN 363 22.645 30.148 45.062 1.00 50.00 N ATOM 3233 N PRO 364 21.097 28.994 50.280 1.00 50.00 N ATOM 3234 CA PRO 364 20.186 28.479 51.255 1.00 50.00 C ATOM 3235 C PRO 364 18.886 28.167 50.600 1.00 50.00 C ATOM 3236 O PRO 364 18.491 28.892 49.687 1.00 50.00 O ATOM 3237 CB PRO 364 20.063 29.609 52.279 1.00 50.00 C ATOM 3238 CD PRO 364 21.414 30.443 50.489 1.00 50.00 C ATOM 3239 CG PRO 364 20.389 30.846 51.512 1.00 50.00 C ATOM 3240 N ASN 365 18.205 27.096 51.048 1.00 50.00 N ATOM 3241 CA ASN 365 16.961 26.742 50.429 1.00 50.00 C ATOM 3242 C ASN 365 15.934 27.666 50.977 1.00 50.00 C ATOM 3243 O ASN 365 16.106 28.238 52.052 1.00 50.00 O ATOM 3244 H ASN 365 18.524 26.603 51.731 1.00 50.00 H ATOM 3245 CB ASN 365 16.637 25.268 50.682 1.00 50.00 C ATOM 3246 CG ASN 365 17.578 24.331 49.952 1.00 50.00 C ATOM 3247 OD1 ASN 365 18.202 24.709 48.961 1.00 50.00 O ATOM 3248 HD21 ASN 365 18.229 22.504 50.047 1.00 50.00 H ATOM 3249 HD22 ASN 365 17.211 22.864 51.171 1.00 50.00 H ATOM 3250 ND2 ASN 365 17.685 23.101 50.443 1.00 50.00 N ATOM 3251 N LEU 366 14.840 27.863 50.225 1.00 50.00 N ATOM 3252 CA LEU 366 13.785 28.693 50.714 1.00 50.00 C ATOM 3253 C LEU 366 12.528 27.896 50.541 1.00 50.00 C ATOM 3254 O LEU 366 12.210 27.481 49.430 1.00 50.00 O ATOM 3255 H LEU 366 14.769 27.475 49.416 1.00 50.00 H ATOM 3256 CB LEU 366 13.755 30.023 49.960 1.00 50.00 C ATOM 3257 CG LEU 366 12.631 30.991 50.335 1.00 50.00 C ATOM 3258 CD1 LEU 366 12.775 31.447 51.780 1.00 50.00 C ATOM 3259 CD2 LEU 366 12.621 32.191 49.401 1.00 50.00 C ATOM 3260 N TRP 367 11.787 27.627 51.636 1.00 50.00 N ATOM 3261 CA TRP 367 10.553 26.916 51.438 1.00 50.00 C ATOM 3262 C TRP 367 9.594 27.303 52.525 1.00 50.00 C ATOM 3263 O TRP 367 9.933 27.330 53.705 1.00 50.00 O ATOM 3264 H TRP 367 12.037 27.873 52.465 1.00 50.00 H ATOM 3265 CB TRP 367 10.800 25.406 51.424 1.00 50.00 C ATOM 3266 HB2 TRP 367 10.856 25.022 52.384 1.00 50.00 H ATOM 3267 HB3 TRP 367 11.313 25.056 50.640 1.00 50.00 H ATOM 3268 CG TRP 367 9.570 24.599 51.144 1.00 50.00 C ATOM 3269 CD1 TRP 367 8.328 25.077 50.837 1.00 50.00 C ATOM 3270 HE1 TRP 367 6.546 24.127 50.428 1.00 50.00 H ATOM 3271 NE1 TRP 367 7.453 24.036 50.646 1.00 50.00 N ATOM 3272 CD2 TRP 367 9.462 23.171 51.144 1.00 50.00 C ATOM 3273 CE2 TRP 367 8.128 22.855 50.830 1.00 50.00 C ATOM 3274 CH2 TRP 367 8.575 20.541 50.979 1.00 50.00 C ATOM 3275 CZ2 TRP 367 7.672 21.539 50.745 1.00 50.00 C ATOM 3276 CE3 TRP 367 10.364 22.129 51.380 1.00 50.00 C ATOM 3277 CZ3 TRP 367 9.907 20.827 51.294 1.00 50.00 C ATOM 3278 N LYS 368 8.360 27.647 52.118 1.00 50.00 N ATOM 3279 CA LYS 368 7.262 28.080 52.938 1.00 50.00 C ATOM 3280 C LYS 368 6.626 26.961 53.713 1.00 50.00 C ATOM 3281 O LYS 368 6.026 27.209 54.756 1.00 50.00 O ATOM 3282 H LYS 368 8.257 27.583 51.225 1.00 50.00 H ATOM 3283 CB LYS 368 6.192 28.763 52.084 1.00 50.00 C ATOM 3284 CD LYS 368 6.928 31.118 52.549 1.00 50.00 C ATOM 3285 CE LYS 368 7.258 32.470 51.938 1.00 50.00 C ATOM 3286 CG LYS 368 6.634 30.083 51.474 1.00 50.00 C ATOM 3287 HZ1 LYS 368 7.749 34.267 52.589 1.00 50.00 H ATOM 3288 HZ2 LYS 368 8.259 33.224 53.463 1.00 50.00 H ATOM 3289 HZ3 LYS 368 6.853 33.590 53.512 1.00 50.00 H ATOM 3290 NZ LYS 368 7.560 33.490 52.980 1.00 50.00 N ATOM 3291 N LYS 369 6.644 25.717 53.198 1.00 50.00 N ATOM 3292 CA LYS 369 5.916 24.679 53.879 1.00 50.00 C ATOM 3293 C LYS 369 6.795 23.489 54.073 1.00 50.00 C ATOM 3294 O LYS 369 7.785 23.313 53.367 1.00 50.00 O ATOM 3295 H LYS 369 7.099 25.528 52.445 1.00 50.00 H ATOM 3296 CB LYS 369 4.658 24.303 53.093 1.00 50.00 C ATOM 3297 CD LYS 369 3.003 25.805 54.233 1.00 50.00 C ATOM 3298 CE LYS 369 1.975 26.910 54.046 1.00 50.00 C ATOM 3299 CG LYS 369 3.672 25.445 52.917 1.00 50.00 C ATOM 3300 HZ1 LYS 369 0.801 28.001 55.198 1.00 50.00 H ATOM 3301 HZ2 LYS 369 2.047 27.665 55.868 1.00 50.00 H ATOM 3302 HZ3 LYS 369 0.998 26.669 55.743 1.00 50.00 H ATOM 3303 NZ LYS 369 1.397 27.356 55.344 1.00 50.00 N ATOM 3304 N GLY 370 6.449 22.628 55.054 1.00 50.00 N ATOM 3305 CA GLY 370 5.330 22.863 55.918 1.00 50.00 C ATOM 3306 C GLY 370 5.661 24.059 56.744 1.00 50.00 C ATOM 3307 O GLY 370 4.812 24.910 57.005 1.00 50.00 O ATOM 3308 H GLY 370 6.947 21.886 55.157 1.00 50.00 H ATOM 3309 N THR 371 6.928 24.134 57.196 1.00 50.00 N ATOM 3310 CA THR 371 7.354 25.252 57.979 1.00 50.00 C ATOM 3311 C THR 371 8.221 26.118 57.126 1.00 50.00 C ATOM 3312 O THR 371 8.351 25.911 55.919 1.00 50.00 O ATOM 3313 H THR 371 7.507 23.473 57.002 1.00 50.00 H ATOM 3314 CB THR 371 8.104 24.801 59.246 1.00 50.00 C ATOM 3315 HG1 THR 371 9.802 24.687 58.449 1.00 50.00 H ATOM 3316 OG1 THR 371 9.329 24.155 58.876 1.00 50.00 O ATOM 3317 CG2 THR 371 7.259 23.820 60.045 1.00 50.00 C ATOM 3318 N ASN 372 8.817 27.147 57.760 1.00 50.00 N ATOM 3319 CA ASN 372 9.696 28.066 57.101 1.00 50.00 C ATOM 3320 C ASN 372 10.931 27.324 56.702 1.00 50.00 C ATOM 3321 O ASN 372 11.517 27.593 55.655 1.00 50.00 O ATOM 3322 H ASN 372 8.640 27.242 58.637 1.00 50.00 H ATOM 3323 CB ASN 372 10.006 29.257 58.011 1.00 50.00 C ATOM 3324 CG ASN 372 10.793 30.341 57.302 1.00 50.00 C ATOM 3325 OD1 ASN 372 10.311 30.947 56.346 1.00 50.00 O ATOM 3326 HD21 ASN 372 12.520 31.225 57.388 1.00 50.00 H ATOM 3327 HD22 ASN 372 12.326 30.123 58.475 1.00 50.00 H ATOM 3328 ND2 ASN 372 12.010 30.590 57.772 1.00 50.00 N ATOM 3329 N GLY 373 11.385 26.381 57.546 1.00 50.00 N ATOM 3330 CA GLY 373 12.601 25.694 57.223 1.00 50.00 C ATOM 3331 C GLY 373 12.320 24.552 56.297 1.00 50.00 C ATOM 3332 O GLY 373 11.176 24.145 56.105 1.00 50.00 O ATOM 3333 H GLY 373 10.941 26.179 58.302 1.00 50.00 H ATOM 3334 N TYR 374 13.401 24.022 55.689 1.00 50.00 N ATOM 3335 CA TYR 374 13.358 22.866 54.840 1.00 50.00 C ATOM 3336 C TYR 374 14.521 22.040 55.266 1.00 50.00 C ATOM 3337 O TYR 374 15.488 22.583 55.797 1.00 50.00 O ATOM 3338 H TYR 374 14.184 24.439 55.842 1.00 50.00 H ATOM 3339 CB TYR 374 13.413 23.279 53.368 1.00 50.00 C ATOM 3340 CG TYR 374 13.350 22.118 52.402 1.00 50.00 C ATOM 3341 HH TYR 374 13.815 18.946 49.240 1.00 50.00 H ATOM 3342 OH TYR 374 13.163 18.918 49.754 1.00 50.00 O ATOM 3343 CZ TYR 374 13.227 19.977 50.629 1.00 50.00 C ATOM 3344 CD1 TYR 374 12.309 21.201 52.459 1.00 50.00 C ATOM 3345 CE1 TYR 374 12.243 20.136 51.581 1.00 50.00 C ATOM 3346 CD2 TYR 374 14.333 21.942 51.436 1.00 50.00 C ATOM 3347 CE2 TYR 374 14.284 20.883 50.550 1.00 50.00 C ATOM 3348 N PRO 375 14.480 20.746 55.117 1.00 50.00 N ATOM 3349 CA PRO 375 15.669 20.044 55.485 1.00 50.00 C ATOM 3350 C PRO 375 16.731 20.391 54.490 1.00 50.00 C ATOM 3351 O PRO 375 16.789 19.756 53.440 1.00 50.00 O ATOM 3352 CB PRO 375 15.260 18.571 55.432 1.00 50.00 C ATOM 3353 CD PRO 375 13.285 19.819 54.916 1.00 50.00 C ATOM 3354 CG PRO 375 13.780 18.587 55.618 1.00 50.00 C ATOM 3355 N ILE 376 17.627 21.339 54.825 1.00 50.00 N ATOM 3356 CA ILE 376 18.641 21.776 53.906 1.00 50.00 C ATOM 3357 C ILE 376 19.898 21.747 54.689 1.00 50.00 C ATOM 3358 O ILE 376 19.866 22.052 55.877 1.00 50.00 O ATOM 3359 H ILE 376 17.579 21.700 55.647 1.00 50.00 H ATOM 3360 CB ILE 376 18.317 23.166 53.327 1.00 50.00 C ATOM 3361 CD1 ILE 376 18.126 25.630 53.951 1.00 50.00 C ATOM 3362 CG1 ILE 376 18.241 24.206 54.447 1.00 50.00 C ATOM 3363 CG2 ILE 376 17.034 23.118 52.511 1.00 50.00 C ATOM 3364 N PHE 377 21.041 21.450 54.042 1.00 50.00 N ATOM 3365 CA PHE 377 22.275 21.489 54.766 1.00 50.00 C ATOM 3366 C PHE 377 22.416 22.871 55.304 1.00 50.00 C ATOM 3367 O PHE 377 22.529 23.835 54.550 1.00 50.00 O ATOM 3368 H PHE 377 21.038 21.229 53.169 1.00 50.00 H ATOM 3369 CB PHE 377 23.441 21.096 53.858 1.00 50.00 C ATOM 3370 CG PHE 377 24.770 21.063 54.557 1.00 50.00 C ATOM 3371 CZ PHE 377 27.231 21.011 55.849 1.00 50.00 C ATOM 3372 CD1 PHE 377 25.116 19.998 55.368 1.00 50.00 C ATOM 3373 CE1 PHE 377 26.339 19.968 56.013 1.00 50.00 C ATOM 3374 CD2 PHE 377 25.675 22.099 54.403 1.00 50.00 C ATOM 3375 CE2 PHE 377 26.897 22.070 55.046 1.00 50.00 C ATOM 3376 N GLN 378 22.403 22.971 56.646 1.00 50.00 N ATOM 3377 CA GLN 378 22.525 24.182 57.402 1.00 50.00 C ATOM 3378 C GLN 378 21.988 23.858 58.745 1.00 50.00 C ATOM 3379 O GLN 378 21.607 22.722 59.022 1.00 50.00 O ATOM 3380 H GLN 378 22.308 22.183 57.070 1.00 50.00 H ATOM 3381 CB GLN 378 21.774 25.322 56.712 1.00 50.00 C ATOM 3382 CD GLN 378 23.297 27.207 57.425 1.00 50.00 C ATOM 3383 CG GLN 378 21.884 26.659 57.426 1.00 50.00 C ATOM 3384 OE1 GLN 378 23.915 27.355 56.370 1.00 50.00 O ATOM 3385 HE21 GLN 378 24.651 27.837 58.666 1.00 50.00 H ATOM 3386 HE22 GLN 378 23.329 27.384 59.358 1.00 50.00 H ATOM 3387 NE2 GLN 378 23.815 27.508 58.610 1.00 50.00 N ATOM 3388 N TRP 379 21.954 24.871 59.626 1.00 50.00 N ATOM 3389 CA TRP 379 21.355 24.659 60.901 1.00 50.00 C ATOM 3390 C TRP 379 19.904 24.447 60.630 1.00 50.00 C ATOM 3391 O TRP 379 19.276 25.226 59.915 1.00 50.00 O ATOM 3392 H TRP 379 22.303 25.675 59.421 1.00 50.00 H ATOM 3393 CB TRP 379 21.625 25.849 61.824 1.00 50.00 C ATOM 3394 HB2 TRP 379 21.345 25.644 62.799 1.00 50.00 H ATOM 3395 HB3 TRP 379 21.577 26.752 61.395 1.00 50.00 H ATOM 3396 CG TRP 379 23.060 25.977 62.234 1.00 50.00 C ATOM 3397 CD1 TRP 379 23.977 26.860 61.742 1.00 50.00 C ATOM 3398 HE1 TRP 379 25.966 27.173 62.183 1.00 50.00 H ATOM 3399 NE1 TRP 379 25.190 26.679 62.362 1.00 50.00 N ATOM 3400 CD2 TRP 379 23.743 25.196 63.222 1.00 50.00 C ATOM 3401 CE2 TRP 379 25.069 25.661 63.276 1.00 50.00 C ATOM 3402 CH2 TRP 379 25.617 24.094 64.955 1.00 50.00 C ATOM 3403 CZ2 TRP 379 26.018 25.115 64.140 1.00 50.00 C ATOM 3404 CE3 TRP 379 23.361 24.150 64.068 1.00 50.00 C ATOM 3405 CZ3 TRP 379 24.304 23.612 64.923 1.00 50.00 C ATOM 3406 N SER 380 19.337 23.358 61.179 1.00 50.00 N ATOM 3407 CA SER 380 17.952 23.075 60.956 1.00 50.00 C ATOM 3408 C SER 380 17.180 23.924 61.909 1.00 50.00 C ATOM 3409 O SER 380 17.740 24.487 62.849 1.00 50.00 O ATOM 3410 H SER 380 19.833 22.806 61.689 1.00 50.00 H ATOM 3411 CB SER 380 17.672 21.584 61.147 1.00 50.00 C ATOM 3412 HG SER 380 17.291 21.638 62.972 1.00 50.00 H ATOM 3413 OG SER 380 17.824 21.206 62.505 1.00 50.00 O ATOM 3414 N GLU 381 15.862 24.054 61.675 1.00 50.00 N ATOM 3415 CA GLU 381 15.065 24.858 62.550 1.00 50.00 C ATOM 3416 C GLU 381 14.559 23.961 63.669 1.00 50.00 C ATOM 3417 O GLU 381 13.759 23.032 63.374 1.00 50.00 O ATOM 3418 H GLU 381 15.480 23.640 60.972 1.00 50.00 H ATOM 3419 OXT GLU 381 14.962 24.186 64.842 1.00 50.00 O ATOM 3420 CB GLU 381 13.917 25.512 61.780 1.00 50.00 C ATOM 3421 CD GLU 381 13.203 27.123 59.969 1.00 50.00 C ATOM 3422 CG GLU 381 14.368 26.479 60.697 1.00 50.00 C ATOM 3423 OE1 GLU 381 12.051 26.704 60.205 1.00 50.00 O ATOM 3424 OE2 GLU 381 13.444 28.047 59.165 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 104.31 26.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 119.78 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 103.08 28.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 110.28 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.22 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 89.96 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 73.67 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 89.82 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 74.82 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.97 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 82.69 37.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 63.34 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 77.56 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 5.56 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 32.62 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 34.61 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 12.22 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 32.62 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 2.66 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 2.66 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 2.66 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.36 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.36 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2373 CRMSCA SECONDARY STRUCTURE . . 6.18 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.36 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.32 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.42 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.23 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.45 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.25 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.31 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.49 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.44 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.30 120 100.0 120 CRMSSC BURIED . . . . . . . . 10.42 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.94 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.41 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.03 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.25 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.938 0.755 0.783 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 44.106 0.791 0.812 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.966 0.756 0.784 26 100.0 26 ERRCA BURIED . . . . . . . . 42.792 0.749 0.778 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.894 0.754 0.782 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 44.045 0.789 0.810 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.888 0.754 0.782 129 100.0 129 ERRMC BURIED . . . . . . . . 42.926 0.753 0.781 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 40.406 0.685 0.731 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 40.233 0.680 0.728 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 40.435 0.687 0.734 41 100.0 41 ERRSC SURFACE . . . . . . . . 40.417 0.685 0.732 120 100.0 120 ERRSC BURIED . . . . . . . . 40.264 0.681 0.728 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.692 0.720 0.758 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 42.415 0.743 0.776 85 100.0 85 ERRALL SURFACE . . . . . . . . 41.622 0.718 0.756 224 100.0 224 ERRALL BURIED . . . . . . . . 42.212 0.734 0.767 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 8 29 31 31 DISTCA CA (P) 0.00 0.00 0.00 25.81 93.55 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.29 7.02 DISTCA ALL (N) 0 1 5 37 186 254 254 DISTALL ALL (P) 0.00 0.39 1.97 14.57 73.23 254 DISTALL ALL (RMS) 0.00 1.07 2.17 4.07 6.97 DISTALL END of the results output