####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 279), selected 39 , name T0537TS117_1_2-D1 # Molecule2: number of CA atoms 286 ( 2058), selected 39 , name T0537-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS117_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 269 - 289 4.57 15.42 LCS_AVERAGE: 5.71 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 270 - 280 1.97 15.41 LONGEST_CONTINUOUS_SEGMENT: 11 279 - 289 1.53 14.88 LCS_AVERAGE: 2.85 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 279 - 286 0.97 14.85 LCS_AVERAGE: 1.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 251 F 251 3 3 10 2 3 3 3 3 3 4 6 6 7 8 11 13 16 16 18 20 21 24 26 LCS_GDT I 252 I 252 4 5 11 2 3 4 4 4 5 5 6 6 10 11 12 13 16 21 23 24 24 28 29 LCS_GDT E 253 E 253 4 5 11 3 3 4 4 4 5 5 6 7 10 11 18 20 21 22 23 24 24 28 29 LCS_GDT N 254 N 254 4 5 11 3 3 4 4 4 5 5 6 7 14 16 18 20 21 22 23 24 24 28 29 LCS_GDT C 255 C 255 4 5 11 3 3 4 4 4 5 5 6 7 10 11 18 20 21 22 23 24 24 28 29 LCS_GDT Y 256 Y 256 3 5 11 0 3 3 3 4 5 5 6 6 9 15 16 19 21 22 23 24 24 28 29 LCS_GDT A 257 A 257 3 4 11 3 3 3 3 4 4 5 6 6 9 10 11 13 16 17 18 21 23 28 29 LCS_GDT Y 258 Y 258 3 4 11 3 3 3 3 4 4 6 7 8 10 10 14 15 16 17 20 21 23 28 29 LCS_GDT G 259 G 259 3 4 11 3 3 3 3 4 6 7 7 8 10 10 12 15 16 17 19 21 23 28 29 LCS_GDT A 260 A 260 3 4 11 1 3 3 3 4 6 7 7 8 10 10 14 15 16 17 19 20 21 23 24 LCS_GDT V 261 V 261 3 4 11 1 3 3 3 4 6 7 7 7 9 10 14 15 16 17 18 20 21 23 23 LCS_GDT S 262 S 262 3 4 11 0 3 3 4 4 6 7 7 7 9 10 14 15 16 17 18 20 21 23 23 LCS_GDT A 263 A 263 3 4 10 0 3 3 4 4 6 7 7 7 8 10 14 15 16 17 18 20 21 23 23 LCS_GDT T 264 T 264 4 7 10 3 4 4 6 6 7 7 8 8 9 13 15 15 16 17 18 20 21 23 23 LCS_GDT K 265 K 265 4 7 10 3 4 4 6 6 7 8 9 10 14 15 15 15 16 17 18 20 21 23 23 LCS_GDT G 266 G 266 6 7 10 5 5 6 6 7 7 8 9 10 14 15 15 15 16 17 18 20 21 23 23 LCS_GDT G 267 G 267 6 7 10 5 5 6 6 7 7 8 9 10 14 15 15 15 16 17 18 20 21 23 23 LCS_GDT V 268 V 268 6 7 15 5 5 6 6 7 7 8 9 10 14 15 15 16 18 18 20 22 23 28 29 LCS_GDT G 269 G 269 6 7 21 5 5 6 6 7 7 8 9 11 14 16 16 19 20 22 23 24 24 28 29 LCS_GDT G 270 G 270 6 11 21 5 5 6 8 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT I 271 I 271 6 11 21 3 5 7 9 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT L 272 L 272 3 11 21 3 4 4 8 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT G 273 G 273 5 11 21 3 4 7 9 10 12 12 13 14 15 16 18 20 21 22 23 24 24 28 29 LCS_GDT Q 274 Q 274 5 11 21 3 5 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT I 275 I 275 5 11 21 4 4 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT D 276 D 276 5 11 21 4 5 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT K 277 K 277 5 11 21 4 5 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT S 278 S 278 5 11 21 4 5 6 9 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT C 279 C 279 8 11 21 3 7 9 10 10 12 13 14 14 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT D 280 D 280 8 11 21 3 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT I 281 I 281 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT A 282 A 282 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 19 21 22 23 24 24 28 29 LCS_GDT I 283 I 283 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT K 284 K 284 8 11 21 4 7 9 10 10 12 13 14 14 17 18 18 19 20 20 21 22 23 28 29 LCS_GDT N 285 N 285 8 11 21 4 5 7 10 10 12 13 14 14 17 18 18 19 20 20 21 22 22 23 23 LCS_GDT S 286 S 286 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 20 21 21 23 24 24 28 29 LCS_GDT A 287 A 287 5 11 21 4 5 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 26 29 LCS_GDT A 288 A 288 5 11 21 4 5 5 7 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT W 289 W 289 5 11 21 4 6 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_AVERAGE LCS_A: 3.45 ( 1.78 2.85 5.71 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 GDT PERCENT_AT 1.75 2.45 3.15 3.50 3.50 4.20 4.55 4.90 5.24 5.94 6.29 6.29 6.99 7.34 7.69 8.04 8.39 8.39 9.79 10.14 GDT RMS_LOCAL 0.34 0.79 1.03 1.19 1.19 1.76 1.95 2.30 3.20 3.39 3.71 3.71 4.16 4.35 4.86 4.86 5.14 5.14 6.94 7.02 GDT RMS_ALL_AT 17.80 14.70 15.31 15.37 15.37 14.70 14.51 14.72 15.92 15.50 16.00 16.00 15.94 15.94 14.91 15.55 15.13 15.13 12.82 13.03 # Checking swapping # possible swapping detected: Y 256 Y 256 # possible swapping detected: Y 258 Y 258 # possible swapping detected: D 276 D 276 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 251 F 251 17.098 0 0.095 1.215 19.171 0.000 0.000 LGA I 252 I 252 15.532 0 0.585 0.617 16.059 0.000 0.000 LGA E 253 E 253 17.386 0 0.579 0.834 20.162 0.000 0.000 LGA N 254 N 254 16.192 0 0.386 1.155 18.339 0.000 0.000 LGA C 255 C 255 15.013 0 0.577 0.604 15.028 0.000 0.000 LGA Y 256 Y 256 15.077 0 0.567 0.653 20.979 0.000 0.000 LGA A 257 A 257 19.237 0 0.615 0.597 20.737 0.000 0.000 LGA Y 258 Y 258 18.134 0 0.171 1.263 23.671 0.000 0.000 LGA G 259 G 259 19.108 0 0.629 0.629 19.904 0.000 0.000 LGA A 260 A 260 21.617 0 0.640 0.584 25.565 0.000 0.000 LGA V 261 V 261 26.220 0 0.636 1.356 27.334 0.000 0.000 LGA S 262 S 262 27.246 0 0.608 0.546 28.426 0.000 0.000 LGA A 263 A 263 29.063 0 0.607 0.584 30.143 0.000 0.000 LGA T 264 T 264 27.544 0 0.605 0.615 28.711 0.000 0.000 LGA K 265 K 265 26.396 0 0.358 1.068 35.375 0.000 0.000 LGA G 266 G 266 22.123 0 0.194 0.194 23.513 0.000 0.000 LGA G 267 G 267 17.807 0 0.040 0.040 19.214 0.000 0.000 LGA V 268 V 268 11.343 0 0.157 1.067 13.700 0.000 0.476 LGA G 269 G 269 7.927 0 0.150 0.150 8.885 14.405 14.405 LGA G 270 G 270 2.960 0 0.733 0.733 4.877 42.500 42.500 LGA I 271 I 271 3.286 0 0.640 1.603 6.656 50.119 43.214 LGA L 272 L 272 6.524 0 0.104 1.407 10.540 10.714 7.321 LGA G 273 G 273 11.841 0 0.444 0.444 12.676 0.119 0.119 LGA Q 274 Q 274 11.412 0 0.173 0.493 19.359 0.833 0.370 LGA I 275 I 275 7.656 0 0.097 0.162 11.520 2.500 9.107 LGA D 276 D 276 10.343 0 0.197 1.259 14.551 2.857 1.429 LGA K 277 K 277 9.569 0 0.338 0.659 20.256 7.976 3.545 LGA S 278 S 278 4.163 0 0.102 0.610 7.560 49.048 38.254 LGA C 279 C 279 0.477 0 0.550 0.579 1.990 88.333 83.175 LGA D 280 D 280 0.943 0 0.152 1.203 5.200 85.952 70.952 LGA I 281 I 281 1.904 0 0.137 1.039 5.384 75.000 62.976 LGA A 282 A 282 1.472 0 0.068 0.121 1.672 79.286 78.000 LGA I 283 I 283 1.330 0 0.053 0.685 1.838 83.690 78.274 LGA K 284 K 284 1.358 0 0.650 0.588 2.507 79.286 72.169 LGA N 285 N 285 3.033 0 0.520 1.258 5.844 47.143 37.500 LGA S 286 S 286 1.903 0 0.080 0.770 5.191 72.976 61.349 LGA A 287 A 287 1.582 0 0.108 0.122 2.478 75.000 72.952 LGA A 288 A 288 3.086 0 0.191 0.220 5.323 53.810 48.286 LGA W 289 W 289 1.338 0 0.445 1.394 11.622 72.976 29.354 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 279 279 100.00 286 SUMMARY(RMSD_GDC): 10.053 10.047 11.426 3.477 2.992 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 286 4.0 14 2.30 4.720 4.318 0.583 LGA_LOCAL RMSD: 2.300 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.723 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 10.053 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.442512 * X + -0.854123 * Y + -0.273235 * Z + 35.722248 Y_new = 0.120456 * X + -0.358543 * Y + 0.925709 * Z + 9.915363 Z_new = -0.888636 * X + 0.376725 * Y + 0.261544 * Z + 72.486557 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.875822 1.094361 0.963934 [DEG: 164.7725 62.7023 55.2294 ] ZXZ: -2.854579 1.306175 -1.169827 [DEG: -163.5553 74.8383 -67.0262 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS117_1_2-D1 REMARK 2: T0537-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS117_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 286 4.0 14 2.30 4.318 10.05 REMARK ---------------------------------------------------------- MOLECULE T0537TS117_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0537 REMARK PARENT N/A ATOM 85 N PHE 251 12.483 8.228 49.332 1.00 0.00 N ATOM 86 CA PHE 251 12.357 7.499 48.092 1.00 0.00 C ATOM 87 C PHE 251 11.142 8.072 47.420 1.00 0.00 C ATOM 88 O PHE 251 10.183 8.425 48.100 1.00 0.00 O ATOM 89 CB PHE 251 12.135 5.966 48.231 1.00 0.00 C ATOM 90 CG PHE 251 13.355 5.295 48.808 1.00 0.00 C ATOM 91 CD1 PHE 251 13.478 5.139 50.170 1.00 0.00 C ATOM 92 CD2 PHE 251 14.394 4.858 48.004 1.00 0.00 C ATOM 93 CE1 PHE 251 14.647 4.691 50.730 1.00 0.00 C ATOM 94 CE2 PHE 251 15.600 4.480 48.564 1.00 0.00 C ATOM 95 CZ PHE 251 15.725 4.412 49.932 1.00 0.00 C ATOM 96 N ILE 252 11.189 8.165 46.069 1.00 0.00 N ATOM 97 CA ILE 252 10.186 8.659 45.151 1.00 0.00 C ATOM 98 C ILE 252 8.847 8.088 45.457 1.00 0.00 C ATOM 99 O ILE 252 7.898 8.832 45.699 1.00 0.00 O ATOM 100 CB ILE 252 10.548 8.299 43.716 1.00 0.00 C ATOM 101 CG1 ILE 252 11.918 8.938 43.387 1.00 0.00 C ATOM 102 CG2 ILE 252 9.387 8.631 42.738 1.00 0.00 C ATOM 103 CD1 ILE 252 12.355 8.818 41.929 1.00 0.00 C ATOM 104 N GLU 253 8.794 6.745 45.423 1.00 0.00 N ATOM 105 CA GLU 253 7.677 5.904 45.693 1.00 0.00 C ATOM 106 C GLU 253 7.035 6.345 46.959 1.00 0.00 C ATOM 107 O GLU 253 5.827 6.565 47.000 1.00 0.00 O ATOM 108 CB GLU 253 8.176 4.452 45.842 1.00 0.00 C ATOM 109 CG GLU 253 7.174 3.437 46.376 1.00 0.00 C ATOM 110 CD GLU 253 7.872 2.085 46.390 1.00 0.00 C ATOM 111 OE1 GLU 253 9.121 2.041 46.212 1.00 0.00 O ATOM 112 OE2 GLU 253 7.151 1.071 46.573 1.00 0.00 O ATOM 113 N ASN 254 7.835 6.523 48.017 1.00 0.00 N ATOM 114 CA ASN 254 7.258 6.453 49.326 1.00 0.00 C ATOM 115 C ASN 254 6.794 7.853 49.575 1.00 0.00 C ATOM 116 O ASN 254 5.791 8.069 50.242 1.00 0.00 O ATOM 117 CB ASN 254 8.208 6.013 50.460 1.00 0.00 C ATOM 118 CG ASN 254 8.480 4.502 50.371 1.00 0.00 C ATOM 119 OD1 ASN 254 7.721 3.723 49.799 1.00 0.00 O ATOM 120 ND2 ASN 254 9.615 4.055 50.973 1.00 0.00 N ATOM 121 N CYS 255 7.504 8.854 49.009 1.00 0.00 N ATOM 122 CA CYS 255 7.126 10.236 49.073 1.00 0.00 C ATOM 123 C CYS 255 5.809 10.447 48.384 1.00 0.00 C ATOM 124 O CYS 255 4.932 11.096 48.952 1.00 0.00 O ATOM 125 CB CYS 255 8.176 11.161 48.418 1.00 0.00 C ATOM 126 SG CYS 255 9.726 11.252 49.382 1.00 0.00 S ATOM 127 N TYR 256 5.654 9.906 47.154 1.00 0.00 N ATOM 128 CA TYR 256 4.467 10.004 46.339 1.00 0.00 C ATOM 129 C TYR 256 3.315 9.427 47.096 1.00 0.00 C ATOM 130 O TYR 256 2.252 10.042 47.168 1.00 0.00 O ATOM 131 CB TYR 256 4.600 9.227 44.997 1.00 0.00 C ATOM 132 CG TYR 256 3.372 9.385 44.154 1.00 0.00 C ATOM 133 CD1 TYR 256 3.264 10.379 43.202 1.00 0.00 C ATOM 134 CD2 TYR 256 2.381 8.427 44.203 1.00 0.00 C ATOM 135 CE1 TYR 256 2.112 10.492 42.463 1.00 0.00 C ATOM 136 CE2 TYR 256 1.236 8.529 43.455 1.00 0.00 C ATOM 137 CZ TYR 256 1.078 9.608 42.620 1.00 0.00 C ATOM 138 OH TYR 256 -0.066 9.705 41.799 1.00 0.00 H ATOM 139 N ALA 257 3.513 8.220 47.661 1.00 0.00 N ATOM 140 CA ALA 257 2.503 7.512 48.384 1.00 0.00 C ATOM 141 C ALA 257 2.035 8.300 49.554 1.00 0.00 C ATOM 142 O ALA 257 0.845 8.274 49.858 1.00 0.00 O ATOM 143 CB ALA 257 2.982 6.162 48.952 1.00 0.00 C ATOM 144 N TYR 258 2.950 8.988 50.261 1.00 0.00 N ATOM 145 CA TYR 258 2.616 9.460 51.570 1.00 0.00 C ATOM 146 C TYR 258 2.030 10.829 51.392 1.00 0.00 C ATOM 147 O TYR 258 1.225 11.278 52.199 1.00 0.00 O ATOM 148 CB TYR 258 3.773 9.454 52.592 1.00 0.00 C ATOM 149 CG TYR 258 4.234 8.052 52.962 1.00 0.00 C ATOM 150 CD1 TYR 258 3.478 6.898 52.782 1.00 0.00 C ATOM 151 CD2 TYR 258 5.549 7.882 53.352 1.00 0.00 C ATOM 152 CE1 TYR 258 4.018 5.661 53.040 1.00 0.00 C ATOM 153 CE2 TYR 258 6.074 6.649 53.685 1.00 0.00 C ATOM 154 CZ TYR 258 5.275 5.536 53.563 1.00 0.00 C ATOM 155 OH TYR 258 5.829 4.247 53.712 1.00 0.00 H ATOM 156 N GLY 259 2.356 11.520 50.290 1.00 0.00 N ATOM 157 CA GLY 259 1.575 12.645 49.870 1.00 0.00 C ATOM 158 C GLY 259 0.206 12.234 49.413 1.00 0.00 C ATOM 159 O GLY 259 -0.732 13.019 49.510 1.00 0.00 O ATOM 160 N ALA 260 0.023 11.018 48.866 1.00 0.00 N ATOM 161 CA ALA 260 -1.264 10.684 48.325 1.00 0.00 C ATOM 162 C ALA 260 -2.229 10.422 49.431 1.00 0.00 C ATOM 163 O ALA 260 -3.437 10.570 49.240 1.00 0.00 O ATOM 164 CB ALA 260 -1.286 9.486 47.366 1.00 0.00 C ATOM 165 N VAL 261 -1.718 10.084 50.633 1.00 0.00 N ATOM 166 CA VAL 261 -2.568 9.777 51.746 1.00 0.00 C ATOM 167 C VAL 261 -3.078 11.102 52.276 1.00 0.00 C ATOM 168 O VAL 261 -4.038 11.137 53.044 1.00 0.00 O ATOM 169 CB VAL 261 -1.895 8.917 52.818 1.00 0.00 C ATOM 170 CG1 VAL 261 -0.818 9.673 53.618 1.00 0.00 C ATOM 171 CG2 VAL 261 -2.935 8.235 53.736 1.00 0.00 C ATOM 172 N SER 262 -2.452 12.230 51.862 1.00 0.00 N ATOM 173 CA SER 262 -2.764 13.524 52.375 1.00 0.00 C ATOM 174 C SER 262 -3.446 14.311 51.284 1.00 0.00 C ATOM 175 O SER 262 -3.555 15.530 51.393 1.00 0.00 O ATOM 176 CB SER 262 -1.509 14.277 52.864 1.00 0.00 C ATOM 177 OG SER 262 -0.604 14.531 51.801 1.00 0.00 O ATOM 178 N ALA 263 -3.932 13.623 50.220 1.00 0.00 N ATOM 179 CA ALA 263 -4.715 14.173 49.131 1.00 0.00 C ATOM 180 C ALA 263 -3.909 14.800 48.008 1.00 0.00 C ATOM 181 O ALA 263 -4.488 15.504 47.182 1.00 0.00 O ATOM 182 CB ALA 263 -5.882 15.123 49.516 1.00 0.00 C ATOM 183 N THR 264 -2.590 14.544 47.874 1.00 0.00 N ATOM 184 CA THR 264 -1.866 15.000 46.706 1.00 0.00 C ATOM 185 C THR 264 -1.966 13.953 45.629 1.00 0.00 C ATOM 186 O THR 264 -2.020 12.762 45.918 1.00 0.00 O ATOM 187 CB THR 264 -0.441 15.316 47.063 1.00 0.00 C ATOM 188 OG1 THR 264 -0.456 16.257 48.127 1.00 0.00 O ATOM 189 CG2 THR 264 0.323 15.917 45.867 1.00 0.00 C ATOM 190 N LYS 265 -2.034 14.376 44.346 1.00 0.00 N ATOM 191 CA LYS 265 -2.279 13.466 43.265 1.00 0.00 C ATOM 192 C LYS 265 -1.124 13.508 42.296 1.00 0.00 C ATOM 193 O LYS 265 -1.324 13.286 41.104 1.00 0.00 O ATOM 194 CB LYS 265 -3.588 13.823 42.518 1.00 0.00 C ATOM 195 CG LYS 265 -4.833 13.828 43.427 1.00 0.00 C ATOM 196 CD LYS 265 -5.233 12.432 43.920 1.00 0.00 C ATOM 197 CE LYS 265 -6.417 12.443 44.892 1.00 0.00 C ATOM 198 NZ LYS 265 -6.729 11.068 45.347 1.00 0.00 N ATOM 199 N GLY 266 0.116 13.765 42.762 1.00 0.00 N ATOM 200 CA GLY 266 1.153 14.171 41.847 1.00 0.00 C ATOM 201 C GLY 266 2.448 14.098 42.600 1.00 0.00 C ATOM 202 O GLY 266 2.429 14.050 43.829 1.00 0.00 O ATOM 203 N GLY 267 3.609 14.080 41.898 1.00 0.00 N ATOM 204 CA GLY 267 4.868 14.016 42.589 1.00 0.00 C ATOM 205 C GLY 267 5.967 14.159 41.579 1.00 0.00 C ATOM 206 O GLY 267 5.902 13.543 40.516 1.00 0.00 O ATOM 207 N VAL 268 7.009 14.964 41.905 1.00 0.00 N ATOM 208 CA VAL 268 8.107 15.232 41.008 1.00 0.00 C ATOM 209 C VAL 268 9.294 15.367 41.915 1.00 0.00 C ATOM 210 O VAL 268 9.130 15.645 43.104 1.00 0.00 O ATOM 211 CB VAL 268 8.009 16.437 40.083 1.00 0.00 C ATOM 212 CG1 VAL 268 6.876 16.227 39.056 1.00 0.00 C ATOM 213 CG2 VAL 268 7.878 17.768 40.854 1.00 0.00 C ATOM 214 N GLY 269 10.512 15.159 41.378 1.00 0.00 N ATOM 215 CA GLY 269 11.660 14.945 42.197 1.00 0.00 C ATOM 216 C GLY 269 12.825 15.165 41.308 1.00 0.00 C ATOM 217 O GLY 269 12.662 15.279 40.097 1.00 0.00 O ATOM 218 N GLY 270 14.021 15.244 41.899 1.00 0.00 N ATOM 219 CA GLY 270 15.204 15.707 41.250 1.00 0.00 C ATOM 220 C GLY 270 16.029 14.497 41.437 1.00 0.00 C ATOM 221 O GLY 270 15.690 13.691 42.291 1.00 0.00 O ATOM 222 N ILE 271 17.116 14.332 40.687 1.00 0.00 N ATOM 223 CA ILE 271 17.838 13.104 40.767 1.00 0.00 C ATOM 224 C ILE 271 19.217 13.647 40.945 1.00 0.00 C ATOM 225 O ILE 271 19.454 14.784 40.538 1.00 0.00 O ATOM 226 CB ILE 271 17.728 12.187 39.590 1.00 0.00 C ATOM 227 CG1 ILE 271 18.363 12.719 38.282 1.00 0.00 C ATOM 228 CG2 ILE 271 16.367 11.479 39.476 1.00 0.00 C ATOM 229 CD1 ILE 271 18.408 11.691 37.157 1.00 0.00 C ATOM 230 N LEU 272 20.137 12.904 41.599 1.00 0.00 N ATOM 231 CA LEU 272 21.450 13.395 41.907 1.00 0.00 C ATOM 232 C LEU 272 22.346 12.206 41.849 1.00 0.00 C ATOM 233 O LEU 272 21.924 11.119 42.221 1.00 0.00 O ATOM 234 CB LEU 272 21.566 13.866 43.359 1.00 0.00 C ATOM 235 CG LEU 272 20.844 15.177 43.726 1.00 0.00 C ATOM 236 CD1 LEU 272 20.893 15.417 45.249 1.00 0.00 C ATOM 237 CD2 LEU 272 21.394 16.370 42.925 1.00 0.00 C ATOM 238 N GLY 273 23.607 12.344 41.403 1.00 0.00 N ATOM 239 CA GLY 273 24.408 11.175 41.206 1.00 0.00 C ATOM 240 C GLY 273 25.624 11.634 40.479 1.00 0.00 C ATOM 241 O GLY 273 26.073 12.749 40.735 1.00 0.00 O ATOM 242 N GLN 274 26.175 10.809 39.555 1.00 0.00 N ATOM 243 CA GLN 274 27.402 11.151 38.881 1.00 0.00 C ATOM 244 C GLN 274 27.505 10.320 37.630 1.00 0.00 C ATOM 245 O GLN 274 26.686 9.431 37.413 1.00 0.00 O ATOM 246 CB GLN 274 28.683 10.964 39.729 1.00 0.00 C ATOM 247 CG GLN 274 29.064 9.504 39.988 1.00 0.00 C ATOM 248 CD GLN 274 30.184 9.477 41.019 1.00 0.00 C ATOM 249 OE1 GLN 274 30.050 10.022 42.114 1.00 0.00 O ATOM 250 NE2 GLN 274 31.318 8.811 40.670 1.00 0.00 N ATOM 251 N ILE 275 28.548 10.571 36.809 1.00 0.00 N ATOM 252 CA ILE 275 28.580 10.249 35.406 1.00 0.00 C ATOM 253 C ILE 275 29.876 9.514 35.350 1.00 0.00 C ATOM 254 O ILE 275 30.876 10.015 35.869 1.00 0.00 O ATOM 255 CB ILE 275 28.676 11.418 34.437 1.00 0.00 C ATOM 256 CG1 ILE 275 27.348 12.191 34.388 1.00 0.00 C ATOM 257 CG2 ILE 275 29.128 10.919 33.035 1.00 0.00 C ATOM 258 CD1 ILE 275 27.410 13.445 33.511 1.00 0.00 C ATOM 259 N ASP 276 29.852 8.320 34.724 1.00 0.00 N ATOM 260 CA ASP 276 30.987 7.485 34.432 1.00 0.00 C ATOM 261 C ASP 276 31.041 7.322 32.950 1.00 0.00 C ATOM 262 O ASP 276 30.292 6.479 32.458 1.00 0.00 O ATOM 263 CB ASP 276 30.763 6.071 35.014 1.00 0.00 C ATOM 264 CG ASP 276 31.655 4.943 34.463 1.00 0.00 C ATOM 265 OD1 ASP 276 32.583 5.108 33.618 1.00 0.00 O ATOM 266 OD2 ASP 276 31.399 3.831 34.994 1.00 0.00 O ATOM 267 N LYS 277 31.952 8.096 32.268 1.00 0.00 N ATOM 268 CA LYS 277 32.324 8.043 30.855 1.00 0.00 C ATOM 269 C LYS 277 31.192 7.443 30.136 1.00 0.00 C ATOM 270 O LYS 277 30.160 8.070 30.306 1.00 0.00 O ATOM 271 CB LYS 277 33.638 7.339 30.527 1.00 0.00 C ATOM 272 CG LYS 277 34.819 8.221 30.893 1.00 0.00 C ATOM 273 CD LYS 277 36.124 7.473 30.723 1.00 0.00 C ATOM 274 CE LYS 277 37.337 8.340 31.035 1.00 0.00 C ATOM 275 NZ LYS 277 38.572 7.544 30.890 1.00 0.00 N ATOM 276 N SER 278 31.324 6.230 29.524 1.00 0.00 N ATOM 277 CA SER 278 30.483 5.475 28.584 1.00 0.00 C ATOM 278 C SER 278 29.047 5.924 28.318 1.00 0.00 C ATOM 279 O SER 278 28.153 5.134 28.021 1.00 0.00 O ATOM 280 CB SER 278 30.380 4.018 29.095 1.00 0.00 C ATOM 281 OG SER 278 29.989 4.025 30.460 1.00 0.00 O ATOM 282 N CYS 279 28.814 7.227 28.363 1.00 0.00 N ATOM 283 CA CYS 279 27.648 7.878 28.843 1.00 0.00 C ATOM 284 C CYS 279 26.745 7.173 29.834 1.00 0.00 C ATOM 285 O CYS 279 25.554 7.086 29.553 1.00 0.00 O ATOM 286 CB CYS 279 26.940 8.464 27.645 1.00 0.00 C ATOM 287 SG CYS 279 28.274 9.221 26.653 1.00 0.00 S ATOM 288 N ASP 280 27.226 6.731 31.035 1.00 0.00 N ATOM 289 CA ASP 280 26.322 6.096 31.986 1.00 0.00 C ATOM 290 C ASP 280 26.171 7.001 33.172 1.00 0.00 C ATOM 291 O ASP 280 27.148 7.545 33.685 1.00 0.00 O ATOM 292 CB ASP 280 26.751 4.708 32.524 1.00 0.00 C ATOM 293 CG ASP 280 26.813 3.663 31.400 1.00 0.00 C ATOM 294 OD1 ASP 280 26.124 3.822 30.358 1.00 0.00 O ATOM 295 OD2 ASP 280 27.565 2.668 31.574 1.00 0.00 O ATOM 296 N ILE 281 24.931 7.167 33.664 1.00 0.00 N ATOM 297 CA ILE 281 24.625 8.241 34.570 1.00 0.00 C ATOM 298 C ILE 281 24.119 7.365 35.669 1.00 0.00 C ATOM 299 O ILE 281 23.209 6.570 35.441 1.00 0.00 O ATOM 300 CB ILE 281 23.588 9.249 34.100 1.00 0.00 C ATOM 301 CG1 ILE 281 24.037 10.094 32.890 1.00 0.00 C ATOM 302 CG2 ILE 281 23.290 10.208 35.254 1.00 0.00 C ATOM 303 CD1 ILE 281 22.871 10.832 32.222 1.00 0.00 C ATOM 304 N ALA 282 24.747 7.446 36.856 1.00 0.00 N ATOM 305 CA ALA 282 24.417 6.621 37.982 1.00 0.00 C ATOM 306 C ALA 282 23.829 7.587 38.910 1.00 0.00 C ATOM 307 O ALA 282 24.436 8.618 39.174 1.00 0.00 O ATOM 308 CB ALA 282 25.598 6.048 38.771 1.00 0.00 C ATOM 309 N ILE 283 22.641 7.281 39.429 1.00 0.00 N ATOM 310 CA ILE 283 21.870 8.291 40.046 1.00 0.00 C ATOM 311 C ILE 283 21.465 7.675 41.322 1.00 0.00 C ATOM 312 O ILE 283 20.804 6.640 41.347 1.00 0.00 O ATOM 313 CB ILE 283 20.728 8.738 39.223 1.00 0.00 C ATOM 314 CG1 ILE 283 21.219 9.498 37.970 1.00 0.00 C ATOM 315 CG2 ILE 283 19.888 9.635 40.095 1.00 0.00 C ATOM 316 CD1 ILE 283 22.099 10.744 38.226 1.00 0.00 C ATOM 317 N LYS 284 21.910 8.327 42.407 1.00 0.00 N ATOM 318 CA LYS 284 22.060 7.705 43.673 1.00 0.00 C ATOM 319 C LYS 284 21.289 8.482 44.701 1.00 0.00 C ATOM 320 O LYS 284 21.153 7.992 45.817 1.00 0.00 O ATOM 321 CB LYS 284 23.529 7.627 44.130 1.00 0.00 C ATOM 322 CG LYS 284 24.352 6.675 43.251 1.00 0.00 C ATOM 323 CD LYS 284 25.792 6.473 43.725 1.00 0.00 C ATOM 324 CE LYS 284 26.572 5.505 42.823 1.00 0.00 C ATOM 325 NZ LYS 284 27.962 5.313 43.298 1.00 0.00 N ATOM 326 N ASN 285 20.764 9.691 44.394 1.00 0.00 N ATOM 327 CA ASN 285 20.052 10.449 45.401 1.00 0.00 C ATOM 328 C ASN 285 18.996 11.200 44.657 1.00 0.00 C ATOM 329 O ASN 285 18.951 11.103 43.431 1.00 0.00 O ATOM 330 CB ASN 285 20.927 11.419 46.216 1.00 0.00 C ATOM 331 CG ASN 285 20.394 11.584 47.637 1.00 0.00 C ATOM 332 OD1 ASN 285 19.210 11.463 47.944 1.00 0.00 O ATOM 333 ND2 ASN 285 21.328 11.918 48.566 1.00 0.00 N ATOM 334 N SER 286 18.098 11.925 45.361 1.00 0.00 N ATOM 335 CA SER 286 16.994 12.572 44.741 1.00 0.00 C ATOM 336 C SER 286 16.425 13.453 45.805 1.00 0.00 C ATOM 337 O SER 286 16.614 13.171 46.988 1.00 0.00 O ATOM 338 CB SER 286 15.876 11.592 44.272 1.00 0.00 C ATOM 339 OG SER 286 15.368 10.790 45.324 1.00 0.00 O ATOM 340 N ALA 287 15.693 14.528 45.441 1.00 0.00 N ATOM 341 CA ALA 287 14.758 15.065 46.391 1.00 0.00 C ATOM 342 C ALA 287 13.660 15.745 45.663 1.00 0.00 C ATOM 343 O ALA 287 13.826 16.160 44.522 1.00 0.00 O ATOM 344 CB ALA 287 15.361 16.086 47.369 1.00 0.00 C ATOM 345 N ALA 288 12.527 15.922 46.364 1.00 0.00 N ATOM 346 CA ALA 288 11.326 16.401 45.743 1.00 0.00 C ATOM 347 C ALA 288 11.484 17.876 45.842 1.00 0.00 C ATOM 348 O ALA 288 12.263 18.357 46.665 1.00 0.00 O ATOM 349 CB ALA 288 10.001 16.004 46.411 1.00 0.00 C ATOM 350 N TRP 289 10.752 18.623 45.007 1.00 0.00 N ATOM 351 CA TRP 289 10.945 20.035 44.920 1.00 0.00 C ATOM 352 C TRP 289 9.892 20.649 45.788 1.00 0.00 C ATOM 353 O TRP 289 8.718 20.652 45.421 1.00 0.00 O ATOM 354 CB TRP 289 10.772 20.533 43.487 1.00 0.00 C ATOM 355 CG TRP 289 11.851 20.081 42.520 1.00 0.00 C ATOM 356 CD2 TRP 289 13.188 20.612 42.460 1.00 0.00 C ATOM 357 CD1 TRP 289 11.716 19.279 41.428 1.00 0.00 C ATOM 358 CE2 TRP 289 13.756 20.179 41.263 1.00 0.00 C ATOM 359 NE1 TRP 289 12.785 19.481 40.581 1.00 0.00 N ATOM 360 CE3 TRP 289 13.906 21.325 43.366 1.00 0.00 C ATOM 361 CZ3 TRP 289 15.179 21.698 43.013 1.00 0.00 C ATOM 362 CH2 TRP 289 15.663 21.444 41.754 1.00 0.00 H ATOM 363 CZ2 TRP 289 14.993 20.628 40.869 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 279 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.86 32.9 76 13.3 570 ARMSMC SECONDARY STRUCTURE . . 86.22 37.3 51 21.1 242 ARMSMC SURFACE . . . . . . . . 99.42 22.6 31 11.4 272 ARMSMC BURIED . . . . . . . . 80.79 40.0 45 15.1 298 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.15 40.7 27 12.6 214 ARMSSC1 RELIABLE SIDE CHAINS . 84.59 44.0 25 13.0 192 ARMSSC1 SECONDARY STRUCTURE . . 78.71 47.1 17 18.7 91 ARMSSC1 SURFACE . . . . . . . . 78.61 50.0 14 12.3 114 ARMSSC1 BURIED . . . . . . . . 95.50 30.8 13 13.0 100 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.63 47.4 19 13.7 139 ARMSSC2 RELIABLE SIDE CHAINS . 73.32 56.2 16 14.7 109 ARMSSC2 SECONDARY STRUCTURE . . 79.69 66.7 12 21.1 57 ARMSSC2 SURFACE . . . . . . . . 101.99 30.0 10 13.0 77 ARMSSC2 BURIED . . . . . . . . 68.22 66.7 9 14.5 62 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 55.18 60.0 5 11.9 42 ARMSSC3 RELIABLE SIDE CHAINS . 35.20 75.0 4 11.1 36 ARMSSC3 SECONDARY STRUCTURE . . 71.10 33.3 3 20.0 15 ARMSSC3 SURFACE . . . . . . . . 35.20 75.0 4 12.1 33 ARMSSC3 BURIED . . . . . . . . 101.34 0.0 1 11.1 9 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.58 66.7 3 13.0 23 ARMSSC4 RELIABLE SIDE CHAINS . 61.58 66.7 3 13.0 23 ARMSSC4 SECONDARY STRUCTURE . . 12.98 100.0 1 11.1 9 ARMSSC4 SURFACE . . . . . . . . 61.58 66.7 3 16.7 18 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.05 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.05 39 13.6 286 CRMSCA CRN = ALL/NP . . . . . 0.2578 CRMSCA SECONDARY STRUCTURE . . 10.11 26 21.5 121 CRMSCA SURFACE . . . . . . . . 10.60 16 11.7 137 CRMSCA BURIED . . . . . . . . 9.65 23 15.4 149 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.20 189 13.6 1386 CRMSMC SECONDARY STRUCTURE . . 10.31 126 21.5 586 CRMSMC SURFACE . . . . . . . . 10.72 80 11.9 673 CRMSMC BURIED . . . . . . . . 9.79 109 15.3 713 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.20 123 13.5 914 CRMSSC RELIABLE SIDE CHAINS . 13.26 111 14.0 794 CRMSSC SECONDARY STRUCTURE . . 11.67 75 18.8 399 CRMSSC SURFACE . . . . . . . . 14.51 69 13.9 495 CRMSSC BURIED . . . . . . . . 11.30 54 12.9 419 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.54 279 13.6 2058 CRMSALL SECONDARY STRUCTURE . . 10.86 179 20.3 883 CRMSALL SURFACE . . . . . . . . 12.75 133 12.8 1043 CRMSALL BURIED . . . . . . . . 10.32 146 14.4 1015 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.492 1.000 0.500 39 13.6 286 ERRCA SECONDARY STRUCTURE . . 9.651 1.000 0.500 26 21.5 121 ERRCA SURFACE . . . . . . . . 10.048 1.000 0.500 16 11.7 137 ERRCA BURIED . . . . . . . . 9.106 1.000 0.500 23 15.4 149 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.622 1.000 0.500 189 13.6 1386 ERRMC SECONDARY STRUCTURE . . 9.809 1.000 0.500 126 21.5 586 ERRMC SURFACE . . . . . . . . 10.157 1.000 0.500 80 11.9 673 ERRMC BURIED . . . . . . . . 9.229 1.000 0.500 109 15.3 713 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.083 1.000 0.500 123 13.5 914 ERRSC RELIABLE SIDE CHAINS . 12.137 1.000 0.500 111 14.0 794 ERRSC SECONDARY STRUCTURE . . 10.912 1.000 0.500 75 18.8 399 ERRSC SURFACE . . . . . . . . 13.310 1.000 0.500 69 13.9 495 ERRSC BURIED . . . . . . . . 10.517 1.000 0.500 54 12.9 419 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.643 1.000 0.500 279 13.6 2058 ERRALL SECONDARY STRUCTURE . . 10.242 1.000 0.500 179 20.3 883 ERRALL SURFACE . . . . . . . . 11.719 1.000 0.500 133 12.8 1043 ERRALL BURIED . . . . . . . . 9.663 1.000 0.500 146 14.4 1015 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 21 39 286 DISTCA CA (P) 0.00 0.00 0.00 1.40 7.34 286 DISTCA CA (RMS) 0.00 0.00 0.00 3.88 7.23 DISTCA ALL (N) 0 0 2 24 128 279 2058 DISTALL ALL (P) 0.00 0.00 0.10 1.17 6.22 2058 DISTALL ALL (RMS) 0.00 0.00 2.24 4.12 7.08 DISTALL END of the results output