####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 39 ( 279), selected 39 , name T0537TS117_1_2 # Molecule2: number of CA atoms 339 ( 2467), selected 39 , name T0537.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS117_1_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 269 - 289 4.57 15.42 LCS_AVERAGE: 4.82 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 270 - 280 1.97 15.41 LONGEST_CONTINUOUS_SEGMENT: 11 279 - 289 1.53 14.88 LCS_AVERAGE: 2.41 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 279 - 286 0.97 14.85 LCS_AVERAGE: 1.51 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 39 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 251 F 251 3 3 10 2 3 3 3 3 3 4 6 6 7 8 11 13 16 16 18 20 21 24 26 LCS_GDT I 252 I 252 4 5 11 2 3 4 4 4 5 5 6 6 10 11 12 13 16 21 23 24 24 28 29 LCS_GDT E 253 E 253 4 5 11 3 3 4 4 4 5 5 6 7 10 11 18 20 21 22 23 24 24 28 29 LCS_GDT N 254 N 254 4 5 11 3 3 4 4 4 5 5 6 7 14 16 18 20 21 22 23 24 24 28 29 LCS_GDT C 255 C 255 4 5 11 3 3 4 4 4 5 5 6 7 10 11 18 20 21 22 23 24 24 28 29 LCS_GDT Y 256 Y 256 3 5 11 0 3 3 3 4 5 5 6 6 9 15 16 19 21 22 23 24 24 28 29 LCS_GDT A 257 A 257 3 4 11 3 3 3 3 4 4 5 6 6 9 10 11 13 16 17 18 21 23 28 29 LCS_GDT Y 258 Y 258 3 4 11 3 3 3 3 4 4 6 7 8 10 10 14 15 16 17 20 21 23 28 29 LCS_GDT G 259 G 259 3 4 11 3 3 3 3 4 6 7 7 8 10 10 12 15 16 17 19 21 23 28 29 LCS_GDT A 260 A 260 3 4 11 1 3 3 3 4 6 7 7 8 10 10 14 15 16 17 19 20 21 23 24 LCS_GDT V 261 V 261 3 4 11 1 3 3 3 4 6 7 7 7 9 10 14 15 16 17 18 20 21 23 23 LCS_GDT S 262 S 262 3 4 11 0 3 3 4 4 6 7 7 7 9 10 14 15 16 17 18 20 21 23 23 LCS_GDT A 263 A 263 3 4 10 0 3 3 4 4 6 7 7 7 8 10 14 15 16 17 18 20 21 23 23 LCS_GDT T 264 T 264 4 7 10 3 4 4 6 6 7 7 8 8 9 13 15 15 16 17 18 20 21 23 23 LCS_GDT K 265 K 265 4 7 10 3 4 4 6 6 7 8 9 10 14 15 15 15 16 17 18 20 21 23 23 LCS_GDT G 266 G 266 6 7 10 5 5 6 6 7 7 8 9 10 14 15 15 15 16 17 18 20 21 23 23 LCS_GDT G 267 G 267 6 7 10 5 5 6 6 7 7 8 9 10 14 15 15 15 16 17 18 20 21 23 23 LCS_GDT V 268 V 268 6 7 15 5 5 6 6 7 7 8 9 10 14 15 15 16 18 18 20 22 23 28 29 LCS_GDT G 269 G 269 6 7 21 5 5 6 6 7 7 8 9 11 14 16 16 19 20 22 23 24 24 28 29 LCS_GDT G 270 G 270 6 11 21 5 5 6 8 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT I 271 I 271 6 11 21 3 5 7 9 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT L 272 L 272 3 11 21 3 4 4 8 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT G 273 G 273 5 11 21 3 4 7 9 10 12 12 13 14 15 16 18 20 21 22 23 24 24 28 29 LCS_GDT Q 274 Q 274 5 11 21 3 5 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT I 275 I 275 5 11 21 4 4 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT D 276 D 276 5 11 21 4 5 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT K 277 K 277 5 11 21 4 5 7 9 10 12 12 13 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT S 278 S 278 5 11 21 4 5 6 9 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT C 279 C 279 8 11 21 3 7 9 10 10 12 13 14 14 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT D 280 D 280 8 11 21 3 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT I 281 I 281 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT A 282 A 282 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 19 21 22 23 24 24 28 29 LCS_GDT I 283 I 283 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT K 284 K 284 8 11 21 4 7 9 10 10 12 13 14 14 17 18 18 19 20 20 21 22 23 28 29 LCS_GDT N 285 N 285 8 11 21 4 5 7 10 10 12 13 14 14 17 18 18 19 20 20 21 22 22 23 23 LCS_GDT S 286 S 286 8 11 21 4 7 9 10 10 12 13 14 15 17 18 18 20 21 21 23 24 24 28 29 LCS_GDT A 287 A 287 5 11 21 4 5 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 26 29 LCS_GDT A 288 A 288 5 11 21 4 5 5 7 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_GDT W 289 W 289 5 11 21 4 6 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 LCS_AVERAGE LCS_A: 2.91 ( 1.51 2.41 4.82 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 9 10 10 12 13 14 15 17 18 18 20 21 22 23 24 24 28 29 GDT PERCENT_AT 1.47 2.06 2.65 2.95 2.95 3.54 3.83 4.13 4.42 5.01 5.31 5.31 5.90 6.19 6.49 6.78 7.08 7.08 8.26 8.55 GDT RMS_LOCAL 0.34 0.79 1.03 1.19 1.19 1.76 1.95 2.30 3.20 3.39 3.71 3.71 4.16 4.35 4.86 4.86 5.14 5.14 6.94 7.02 GDT RMS_ALL_AT 17.80 14.70 15.31 15.37 15.37 14.70 14.51 14.72 15.92 15.50 16.00 16.00 15.94 15.94 14.91 15.55 15.13 15.13 12.82 13.03 # Checking swapping # possible swapping detected: Y 256 Y 256 # possible swapping detected: Y 258 Y 258 # possible swapping detected: D 276 D 276 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 251 F 251 17.098 0 0.095 1.215 19.171 0.000 0.000 LGA I 252 I 252 15.532 0 0.585 0.617 16.059 0.000 0.000 LGA E 253 E 253 17.386 0 0.579 0.834 20.162 0.000 0.000 LGA N 254 N 254 16.192 0 0.386 1.155 18.339 0.000 0.000 LGA C 255 C 255 15.013 0 0.577 0.604 15.028 0.000 0.000 LGA Y 256 Y 256 15.077 0 0.567 0.653 20.979 0.000 0.000 LGA A 257 A 257 19.237 0 0.615 0.597 20.737 0.000 0.000 LGA Y 258 Y 258 18.134 0 0.171 1.263 23.671 0.000 0.000 LGA G 259 G 259 19.108 0 0.629 0.629 19.904 0.000 0.000 LGA A 260 A 260 21.617 0 0.640 0.584 25.565 0.000 0.000 LGA V 261 V 261 26.220 0 0.636 1.356 27.334 0.000 0.000 LGA S 262 S 262 27.246 0 0.608 0.546 28.426 0.000 0.000 LGA A 263 A 263 29.063 0 0.607 0.584 30.143 0.000 0.000 LGA T 264 T 264 27.544 0 0.605 0.615 28.711 0.000 0.000 LGA K 265 K 265 26.396 0 0.358 1.068 35.375 0.000 0.000 LGA G 266 G 266 22.123 0 0.194 0.194 23.513 0.000 0.000 LGA G 267 G 267 17.807 0 0.040 0.040 19.214 0.000 0.000 LGA V 268 V 268 11.343 0 0.157 1.067 13.700 0.000 0.476 LGA G 269 G 269 7.927 0 0.150 0.150 8.885 14.405 14.405 LGA G 270 G 270 2.960 0 0.733 0.733 4.877 42.500 42.500 LGA I 271 I 271 3.286 0 0.640 1.603 6.656 50.119 43.214 LGA L 272 L 272 6.524 0 0.104 1.407 10.540 10.714 7.321 LGA G 273 G 273 11.841 0 0.444 0.444 12.676 0.119 0.119 LGA Q 274 Q 274 11.412 0 0.173 0.493 19.359 0.833 0.370 LGA I 275 I 275 7.656 0 0.097 0.162 11.520 2.500 9.107 LGA D 276 D 276 10.343 0 0.197 1.259 14.551 2.857 1.429 LGA K 277 K 277 9.569 0 0.338 0.659 20.256 7.976 3.545 LGA S 278 S 278 4.163 0 0.102 0.610 7.560 49.048 38.254 LGA C 279 C 279 0.477 0 0.550 0.579 1.990 88.333 83.175 LGA D 280 D 280 0.943 0 0.152 1.203 5.200 85.952 70.952 LGA I 281 I 281 1.904 0 0.137 1.039 5.384 75.000 62.976 LGA A 282 A 282 1.472 0 0.068 0.121 1.672 79.286 78.000 LGA I 283 I 283 1.330 0 0.053 0.685 1.838 83.690 78.274 LGA K 284 K 284 1.358 0 0.650 0.588 2.507 79.286 72.169 LGA N 285 N 285 3.033 0 0.520 1.258 5.844 47.143 37.500 LGA S 286 S 286 1.903 0 0.080 0.770 5.191 72.976 61.349 LGA A 287 A 287 1.582 0 0.108 0.122 2.478 75.000 72.952 LGA A 288 A 288 3.086 0 0.191 0.220 5.323 53.810 48.286 LGA W 289 W 289 1.338 0 0.445 1.394 11.622 72.976 29.354 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 39 156 156 100.00 279 279 100.00 339 SUMMARY(RMSD_GDC): 10.053 10.047 11.426 2.934 2.524 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 39 339 4.0 14 2.30 3.982 3.643 0.583 LGA_LOCAL RMSD: 2.300 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.723 Number of assigned atoms: 39 Std_ASGN_ATOMS RMSD: 10.053 Standard rmsd on all 39 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.442512 * X + -0.854123 * Y + -0.273235 * Z + 35.722248 Y_new = 0.120456 * X + -0.358543 * Y + 0.925709 * Z + 9.915363 Z_new = -0.888636 * X + 0.376725 * Y + 0.261544 * Z + 72.486557 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.875822 1.094361 0.963934 [DEG: 164.7725 62.7023 55.2294 ] ZXZ: -2.854579 1.306175 -1.169827 [DEG: -163.5553 74.8383 -67.0262 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS117_1_2 REMARK 2: T0537.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS117_1_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 39 339 4.0 14 2.30 3.643 10.05 REMARK ---------------------------------------------------------- MOLECULE T0537TS117_1_2 REMARK PARENT number 2 PFRMAT TS TARGET T0537 PARENT N/A ATOM 85 N PHE 251 12.483 8.228 49.332 1.00 0.00 ATOM 86 CA PHE 251 12.357 7.499 48.092 1.00 0.00 ATOM 87 C PHE 251 11.142 8.072 47.420 1.00 0.00 ATOM 88 O PHE 251 10.183 8.425 48.100 1.00 0.00 ATOM 89 CB PHE 251 12.135 5.966 48.231 1.00 0.00 ATOM 90 CG PHE 251 13.355 5.295 48.808 1.00 0.00 ATOM 91 CD1 PHE 251 13.478 5.139 50.170 1.00 0.00 ATOM 92 CD2 PHE 251 14.394 4.858 48.004 1.00 0.00 ATOM 93 CE1 PHE 251 14.647 4.691 50.730 1.00 0.00 ATOM 94 CE2 PHE 251 15.600 4.480 48.564 1.00 0.00 ATOM 95 CZ PHE 251 15.725 4.412 49.932 1.00 0.00 ATOM 96 N ILE 252 11.189 8.165 46.069 1.00 0.00 ATOM 97 CA ILE 252 10.186 8.659 45.151 1.00 0.00 ATOM 98 C ILE 252 8.847 8.088 45.457 1.00 0.00 ATOM 99 O ILE 252 7.898 8.832 45.699 1.00 0.00 ATOM 100 CB ILE 252 10.548 8.299 43.716 1.00 0.00 ATOM 101 CG1 ILE 252 11.918 8.938 43.387 1.00 0.00 ATOM 102 CG2 ILE 252 9.387 8.631 42.738 1.00 0.00 ATOM 103 CD1 ILE 252 12.355 8.818 41.929 1.00 0.00 ATOM 104 N GLU 253 8.794 6.745 45.423 1.00 0.00 ATOM 105 CA GLU 253 7.677 5.904 45.693 1.00 0.00 ATOM 106 C GLU 253 7.035 6.345 46.959 1.00 0.00 ATOM 107 O GLU 253 5.827 6.565 47.000 1.00 0.00 ATOM 108 CB GLU 253 8.176 4.452 45.842 1.00 0.00 ATOM 109 CG GLU 253 7.174 3.437 46.376 1.00 0.00 ATOM 110 CD GLU 253 7.872 2.085 46.390 1.00 0.00 ATOM 111 OE1 GLU 253 9.121 2.041 46.212 1.00 0.00 ATOM 112 OE2 GLU 253 7.151 1.071 46.573 1.00 0.00 ATOM 113 N ASN 254 7.835 6.523 48.017 1.00 0.00 ATOM 114 CA ASN 254 7.258 6.453 49.326 1.00 0.00 ATOM 115 C ASN 254 6.794 7.853 49.575 1.00 0.00 ATOM 116 O ASN 254 5.791 8.069 50.242 1.00 0.00 ATOM 117 CB ASN 254 8.208 6.013 50.460 1.00 0.00 ATOM 118 CG ASN 254 8.480 4.502 50.371 1.00 0.00 ATOM 119 OD1 ASN 254 7.721 3.723 49.799 1.00 0.00 ATOM 120 ND2 ASN 254 9.615 4.055 50.973 1.00 0.00 ATOM 121 N CYS 255 7.504 8.854 49.009 1.00 0.00 ATOM 122 CA CYS 255 7.126 10.236 49.073 1.00 0.00 ATOM 123 C CYS 255 5.809 10.447 48.384 1.00 0.00 ATOM 124 O CYS 255 4.932 11.096 48.952 1.00 0.00 ATOM 125 CB CYS 255 8.176 11.161 48.418 1.00 0.00 ATOM 126 SG CYS 255 9.726 11.252 49.382 1.00 0.00 ATOM 127 N TYR 256 5.654 9.906 47.154 1.00 0.00 ATOM 128 CA TYR 256 4.467 10.004 46.339 1.00 0.00 ATOM 129 C TYR 256 3.315 9.427 47.096 1.00 0.00 ATOM 130 O TYR 256 2.252 10.042 47.168 1.00 0.00 ATOM 131 CB TYR 256 4.600 9.227 44.997 1.00 0.00 ATOM 132 CG TYR 256 3.372 9.385 44.154 1.00 0.00 ATOM 133 CD1 TYR 256 3.264 10.379 43.202 1.00 0.00 ATOM 134 CD2 TYR 256 2.381 8.427 44.203 1.00 0.00 ATOM 135 CE1 TYR 256 2.112 10.492 42.463 1.00 0.00 ATOM 136 CE2 TYR 256 1.236 8.529 43.455 1.00 0.00 ATOM 137 CZ TYR 256 1.078 9.608 42.620 1.00 0.00 ATOM 138 OH TYR 256 -0.066 9.705 41.799 1.00 0.00 ATOM 139 N ALA 257 3.513 8.220 47.661 1.00 0.00 ATOM 140 CA ALA 257 2.503 7.512 48.384 1.00 0.00 ATOM 141 C ALA 257 2.035 8.300 49.554 1.00 0.00 ATOM 142 O ALA 257 0.845 8.274 49.858 1.00 0.00 ATOM 143 CB ALA 257 2.982 6.162 48.952 1.00 0.00 ATOM 144 N TYR 258 2.950 8.988 50.261 1.00 0.00 ATOM 145 CA TYR 258 2.616 9.460 51.570 1.00 0.00 ATOM 146 C TYR 258 2.030 10.829 51.392 1.00 0.00 ATOM 147 O TYR 258 1.225 11.278 52.199 1.00 0.00 ATOM 148 CB TYR 258 3.773 9.454 52.592 1.00 0.00 ATOM 149 CG TYR 258 4.234 8.052 52.962 1.00 0.00 ATOM 150 CD1 TYR 258 3.478 6.898 52.782 1.00 0.00 ATOM 151 CD2 TYR 258 5.549 7.882 53.352 1.00 0.00 ATOM 152 CE1 TYR 258 4.018 5.661 53.040 1.00 0.00 ATOM 153 CE2 TYR 258 6.074 6.649 53.685 1.00 0.00 ATOM 154 CZ TYR 258 5.275 5.536 53.563 1.00 0.00 ATOM 155 OH TYR 258 5.829 4.247 53.712 1.00 0.00 ATOM 156 N GLY 259 2.356 11.520 50.290 1.00 0.00 ATOM 157 CA GLY 259 1.575 12.645 49.870 1.00 0.00 ATOM 158 C GLY 259 0.206 12.234 49.413 1.00 0.00 ATOM 159 O GLY 259 -0.732 13.019 49.510 1.00 0.00 ATOM 160 N ALA 260 0.023 11.018 48.866 1.00 0.00 ATOM 161 CA ALA 260 -1.264 10.684 48.325 1.00 0.00 ATOM 162 C ALA 260 -2.229 10.422 49.431 1.00 0.00 ATOM 163 O ALA 260 -3.437 10.570 49.240 1.00 0.00 ATOM 164 CB ALA 260 -1.286 9.486 47.366 1.00 0.00 ATOM 165 N VAL 261 -1.718 10.084 50.633 1.00 0.00 ATOM 166 CA VAL 261 -2.568 9.777 51.746 1.00 0.00 ATOM 167 C VAL 261 -3.078 11.102 52.276 1.00 0.00 ATOM 168 O VAL 261 -4.038 11.137 53.044 1.00 0.00 ATOM 169 CB VAL 261 -1.895 8.917 52.818 1.00 0.00 ATOM 170 CG1 VAL 261 -0.818 9.673 53.618 1.00 0.00 ATOM 171 CG2 VAL 261 -2.935 8.235 53.736 1.00 0.00 ATOM 172 N SER 262 -2.452 12.230 51.862 1.00 0.00 ATOM 173 CA SER 262 -2.764 13.524 52.375 1.00 0.00 ATOM 174 C SER 262 -3.446 14.311 51.284 1.00 0.00 ATOM 175 O SER 262 -3.555 15.530 51.393 1.00 0.00 ATOM 176 CB SER 262 -1.509 14.277 52.864 1.00 0.00 ATOM 177 OG SER 262 -0.604 14.531 51.801 1.00 0.00 ATOM 178 N ALA 263 -3.932 13.623 50.220 1.00 0.00 ATOM 179 CA ALA 263 -4.715 14.173 49.131 1.00 0.00 ATOM 180 C ALA 263 -3.909 14.800 48.008 1.00 0.00 ATOM 181 O ALA 263 -4.488 15.504 47.182 1.00 0.00 ATOM 182 CB ALA 263 -5.882 15.123 49.516 1.00 0.00 ATOM 183 N THR 264 -2.590 14.544 47.874 1.00 0.00 ATOM 184 CA THR 264 -1.866 15.000 46.706 1.00 0.00 ATOM 185 C THR 264 -1.966 13.953 45.629 1.00 0.00 ATOM 186 O THR 264 -2.020 12.762 45.918 1.00 0.00 ATOM 187 CB THR 264 -0.441 15.316 47.063 1.00 0.00 ATOM 188 OG1 THR 264 -0.456 16.257 48.127 1.00 0.00 ATOM 189 CG2 THR 264 0.323 15.917 45.867 1.00 0.00 ATOM 190 N LYS 265 -2.034 14.376 44.346 1.00 0.00 ATOM 191 CA LYS 265 -2.279 13.466 43.265 1.00 0.00 ATOM 192 C LYS 265 -1.124 13.508 42.296 1.00 0.00 ATOM 193 O LYS 265 -1.324 13.286 41.104 1.00 0.00 ATOM 194 CB LYS 265 -3.588 13.823 42.518 1.00 0.00 ATOM 195 CG LYS 265 -4.833 13.828 43.427 1.00 0.00 ATOM 196 CD LYS 265 -5.233 12.432 43.920 1.00 0.00 ATOM 197 CE LYS 265 -6.417 12.443 44.892 1.00 0.00 ATOM 198 NZ LYS 265 -6.729 11.068 45.347 1.00 0.00 ATOM 199 N GLY 266 0.116 13.765 42.762 1.00 0.00 ATOM 200 CA GLY 266 1.153 14.171 41.847 1.00 0.00 ATOM 201 C GLY 266 2.448 14.098 42.600 1.00 0.00 ATOM 202 O GLY 266 2.429 14.050 43.829 1.00 0.00 ATOM 203 N GLY 267 3.609 14.080 41.898 1.00 0.00 ATOM 204 CA GLY 267 4.868 14.016 42.589 1.00 0.00 ATOM 205 C GLY 267 5.967 14.159 41.579 1.00 0.00 ATOM 206 O GLY 267 5.902 13.543 40.516 1.00 0.00 ATOM 207 N VAL 268 7.009 14.964 41.905 1.00 0.00 ATOM 208 CA VAL 268 8.107 15.232 41.008 1.00 0.00 ATOM 209 C VAL 268 9.294 15.367 41.915 1.00 0.00 ATOM 210 O VAL 268 9.130 15.645 43.104 1.00 0.00 ATOM 211 CB VAL 268 8.009 16.437 40.083 1.00 0.00 ATOM 212 CG1 VAL 268 6.876 16.227 39.056 1.00 0.00 ATOM 213 CG2 VAL 268 7.878 17.768 40.854 1.00 0.00 ATOM 214 N GLY 269 10.512 15.159 41.378 1.00 0.00 ATOM 215 CA GLY 269 11.660 14.945 42.197 1.00 0.00 ATOM 216 C GLY 269 12.825 15.165 41.308 1.00 0.00 ATOM 217 O GLY 269 12.662 15.279 40.097 1.00 0.00 ATOM 218 N GLY 270 14.021 15.244 41.899 1.00 0.00 ATOM 219 CA GLY 270 15.204 15.707 41.250 1.00 0.00 ATOM 220 C GLY 270 16.029 14.497 41.437 1.00 0.00 ATOM 221 O GLY 270 15.690 13.691 42.291 1.00 0.00 ATOM 222 N ILE 271 17.116 14.332 40.687 1.00 0.00 ATOM 223 CA ILE 271 17.838 13.104 40.767 1.00 0.00 ATOM 224 C ILE 271 19.217 13.647 40.945 1.00 0.00 ATOM 225 O ILE 271 19.454 14.784 40.538 1.00 0.00 ATOM 226 CB ILE 271 17.728 12.187 39.590 1.00 0.00 ATOM 227 CG1 ILE 271 18.363 12.719 38.282 1.00 0.00 ATOM 228 CG2 ILE 271 16.367 11.479 39.476 1.00 0.00 ATOM 229 CD1 ILE 271 18.408 11.691 37.157 1.00 0.00 ATOM 230 N LEU 272 20.137 12.904 41.599 1.00 0.00 ATOM 231 CA LEU 272 21.450 13.395 41.907 1.00 0.00 ATOM 232 C LEU 272 22.346 12.206 41.849 1.00 0.00 ATOM 233 O LEU 272 21.924 11.119 42.221 1.00 0.00 ATOM 234 CB LEU 272 21.566 13.866 43.359 1.00 0.00 ATOM 235 CG LEU 272 20.844 15.177 43.726 1.00 0.00 ATOM 236 CD1 LEU 272 20.893 15.417 45.249 1.00 0.00 ATOM 237 CD2 LEU 272 21.395 16.370 42.925 1.00 0.00 ATOM 238 N GLY 273 23.607 12.344 41.403 1.00 0.00 ATOM 239 CA GLY 273 24.408 11.175 41.206 1.00 0.00 ATOM 240 C GLY 273 25.624 11.634 40.479 1.00 0.00 ATOM 241 O GLY 273 26.073 12.749 40.735 1.00 0.00 ATOM 242 N GLN 274 26.175 10.809 39.555 1.00 0.00 ATOM 243 CA GLN 274 27.402 11.151 38.881 1.00 0.00 ATOM 244 C GLN 274 27.505 10.320 37.630 1.00 0.00 ATOM 245 O GLN 274 26.686 9.431 37.413 1.00 0.00 ATOM 246 CB GLN 274 28.683 10.964 39.729 1.00 0.00 ATOM 247 CG GLN 274 29.064 9.504 39.988 1.00 0.00 ATOM 248 CD GLN 274 30.184 9.477 41.019 1.00 0.00 ATOM 249 OE1 GLN 274 30.050 10.022 42.114 1.00 0.00 ATOM 250 NE2 GLN 274 31.318 8.811 40.670 1.00 0.00 ATOM 251 N ILE 275 28.548 10.571 36.809 1.00 0.00 ATOM 252 CA ILE 275 28.580 10.249 35.406 1.00 0.00 ATOM 253 C ILE 275 29.876 9.514 35.350 1.00 0.00 ATOM 254 O ILE 275 30.876 10.015 35.869 1.00 0.00 ATOM 255 CB ILE 275 28.676 11.418 34.437 1.00 0.00 ATOM 256 CG1 ILE 275 27.348 12.191 34.388 1.00 0.00 ATOM 257 CG2 ILE 275 29.128 10.919 33.035 1.00 0.00 ATOM 258 CD1 ILE 275 27.410 13.445 33.511 1.00 0.00 ATOM 259 N ASP 276 29.852 8.320 34.724 1.00 0.00 ATOM 260 CA ASP 276 30.987 7.485 34.432 1.00 0.00 ATOM 261 C ASP 276 31.041 7.322 32.950 1.00 0.00 ATOM 262 O ASP 276 30.292 6.479 32.458 1.00 0.00 ATOM 263 CB ASP 276 30.763 6.071 35.014 1.00 0.00 ATOM 264 CG ASP 276 31.655 4.943 34.463 1.00 0.00 ATOM 265 OD1 ASP 276 32.583 5.108 33.618 1.00 0.00 ATOM 266 OD2 ASP 276 31.399 3.831 34.994 1.00 0.00 ATOM 267 N LYS 277 31.952 8.096 32.268 1.00 0.00 ATOM 268 CA LYS 277 32.324 8.043 30.855 1.00 0.00 ATOM 269 C LYS 277 31.192 7.443 30.136 1.00 0.00 ATOM 270 O LYS 277 30.160 8.070 30.306 1.00 0.00 ATOM 271 CB LYS 277 33.638 7.339 30.527 1.00 0.00 ATOM 272 CG LYS 277 34.819 8.221 30.893 1.00 0.00 ATOM 273 CD LYS 277 36.124 7.473 30.723 1.00 0.00 ATOM 274 CE LYS 277 37.337 8.340 31.035 1.00 0.00 ATOM 275 NZ LYS 277 38.572 7.544 30.890 1.00 0.00 ATOM 276 N SER 278 31.324 6.230 29.524 1.00 0.00 ATOM 277 CA SER 278 30.483 5.475 28.584 1.00 0.00 ATOM 278 C SER 278 29.047 5.924 28.318 1.00 0.00 ATOM 279 O SER 278 28.153 5.134 28.021 1.00 0.00 ATOM 280 CB SER 278 30.380 4.018 29.095 1.00 0.00 ATOM 281 OG SER 278 29.989 4.025 30.460 1.00 0.00 ATOM 282 N CYS 279 28.814 7.227 28.363 1.00 0.00 ATOM 283 CA CYS 279 27.648 7.878 28.843 1.00 0.00 ATOM 284 C CYS 279 26.745 7.173 29.834 1.00 0.00 ATOM 285 O CYS 279 25.554 7.086 29.553 1.00 0.00 ATOM 286 CB CYS 279 26.940 8.464 27.645 1.00 0.00 ATOM 287 SG CYS 279 28.274 9.221 26.653 1.00 0.00 ATOM 288 N ASP 280 27.226 6.731 31.035 1.00 0.00 ATOM 289 CA ASP 280 26.322 6.096 31.986 1.00 0.00 ATOM 290 C ASP 280 26.171 7.001 33.172 1.00 0.00 ATOM 291 O ASP 280 27.148 7.545 33.685 1.00 0.00 ATOM 292 CB ASP 280 26.751 4.708 32.524 1.00 0.00 ATOM 293 CG ASP 280 26.813 3.663 31.400 1.00 0.00 ATOM 294 OD1 ASP 280 26.124 3.822 30.358 1.00 0.00 ATOM 295 OD2 ASP 280 27.565 2.668 31.574 1.00 0.00 ATOM 296 N ILE 281 24.931 7.167 33.664 1.00 0.00 ATOM 297 CA ILE 281 24.625 8.241 34.570 1.00 0.00 ATOM 298 C ILE 281 24.119 7.365 35.669 1.00 0.00 ATOM 299 O ILE 281 23.209 6.570 35.441 1.00 0.00 ATOM 300 CB ILE 281 23.588 9.249 34.100 1.00 0.00 ATOM 301 CG1 ILE 281 24.037 10.094 32.890 1.00 0.00 ATOM 302 CG2 ILE 281 23.290 10.208 35.254 1.00 0.00 ATOM 303 CD1 ILE 281 22.871 10.832 32.222 1.00 0.00 ATOM 304 N ALA 282 24.747 7.446 36.856 1.00 0.00 ATOM 305 CA ALA 282 24.417 6.621 37.982 1.00 0.00 ATOM 306 C ALA 282 23.829 7.587 38.910 1.00 0.00 ATOM 307 O ALA 282 24.436 8.618 39.174 1.00 0.00 ATOM 308 CB ALA 282 25.598 6.048 38.771 1.00 0.00 ATOM 309 N ILE 283 22.641 7.281 39.429 1.00 0.00 ATOM 310 CA ILE 283 21.870 8.291 40.046 1.00 0.00 ATOM 311 C ILE 283 21.465 7.675 41.322 1.00 0.00 ATOM 312 O ILE 283 20.804 6.640 41.347 1.00 0.00 ATOM 313 CB ILE 283 20.728 8.738 39.223 1.00 0.00 ATOM 314 CG1 ILE 283 21.219 9.498 37.970 1.00 0.00 ATOM 315 CG2 ILE 283 19.888 9.635 40.095 1.00 0.00 ATOM 316 CD1 ILE 283 22.099 10.744 38.226 1.00 0.00 ATOM 317 N LYS 284 21.910 8.327 42.407 1.00 0.00 ATOM 318 CA LYS 284 22.060 7.705 43.673 1.00 0.00 ATOM 319 C LYS 284 21.289 8.482 44.701 1.00 0.00 ATOM 320 O LYS 284 21.153 7.992 45.817 1.00 0.00 ATOM 321 CB LYS 284 23.529 7.627 44.130 1.00 0.00 ATOM 322 CG LYS 284 24.352 6.675 43.251 1.00 0.00 ATOM 323 CD LYS 284 25.792 6.473 43.725 1.00 0.00 ATOM 324 CE LYS 284 26.572 5.505 42.823 1.00 0.00 ATOM 325 NZ LYS 284 27.962 5.313 43.298 1.00 0.00 ATOM 326 N ASN 285 20.764 9.691 44.394 1.00 0.00 ATOM 327 CA ASN 285 20.052 10.449 45.401 1.00 0.00 ATOM 328 C ASN 285 18.996 11.200 44.657 1.00 0.00 ATOM 329 O ASN 285 18.951 11.103 43.431 1.00 0.00 ATOM 330 CB ASN 285 20.927 11.419 46.216 1.00 0.00 ATOM 331 CG ASN 285 20.394 11.584 47.637 1.00 0.00 ATOM 332 OD1 ASN 285 19.210 11.463 47.944 1.00 0.00 ATOM 333 ND2 ASN 285 21.328 11.918 48.566 1.00 0.00 ATOM 334 N SER 286 18.098 11.925 45.361 1.00 0.00 ATOM 335 CA SER 286 16.994 12.572 44.741 1.00 0.00 ATOM 336 C SER 286 16.425 13.453 45.805 1.00 0.00 ATOM 337 O SER 286 16.614 13.171 46.988 1.00 0.00 ATOM 338 CB SER 286 15.876 11.592 44.272 1.00 0.00 ATOM 339 OG SER 286 15.368 10.790 45.324 1.00 0.00 ATOM 340 N ALA 287 15.693 14.528 45.441 1.00 0.00 ATOM 341 CA ALA 287 14.758 15.065 46.391 1.00 0.00 ATOM 342 C ALA 287 13.660 15.745 45.663 1.00 0.00 ATOM 343 O ALA 287 13.826 16.160 44.522 1.00 0.00 ATOM 344 CB ALA 287 15.361 16.086 47.369 1.00 0.00 ATOM 345 N ALA 288 12.527 15.922 46.364 1.00 0.00 ATOM 346 CA ALA 288 11.326 16.401 45.743 1.00 0.00 ATOM 347 C ALA 288 11.484 17.876 45.842 1.00 0.00 ATOM 348 O ALA 288 12.263 18.357 46.665 1.00 0.00 ATOM 349 CB ALA 288 10.001 16.004 46.411 1.00 0.00 ATOM 350 N TRP 289 10.752 18.623 45.007 1.00 0.00 ATOM 351 CA TRP 289 10.945 20.035 44.920 1.00 0.00 ATOM 352 C TRP 289 9.892 20.649 45.788 1.00 0.00 ATOM 353 O TRP 289 8.718 20.652 45.421 1.00 0.00 ATOM 354 CB TRP 289 10.772 20.533 43.487 1.00 0.00 ATOM 355 CG TRP 289 11.851 20.081 42.520 1.00 0.00 ATOM 356 CD2 TRP 289 13.188 20.612 42.460 1.00 0.00 ATOM 357 CD1 TRP 289 11.716 19.279 41.428 1.00 0.00 ATOM 358 CE2 TRP 289 13.756 20.179 41.263 1.00 0.00 ATOM 359 NE1 TRP 289 12.785 19.481 40.581 1.00 0.00 ATOM 360 CE3 TRP 289 13.906 21.325 43.366 1.00 0.00 ATOM 361 CZ3 TRP 289 15.179 21.698 43.013 1.00 0.00 ATOM 362 CH2 TRP 289 15.663 21.444 41.754 1.00 0.00 ATOM 363 CZ2 TRP 289 14.993 20.628 40.869 1.00 0.00 TER END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 2467 atoms, MODEL 2781 atoms, 2466 common with TARGET Number of atoms possible to evaluate: 279 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.72 41.7 48 7.1 673 ARMSMC SECONDARY STRUCTURE . . 55.41 44.1 34 12.5 272 ARMSMC SURFACE . . . . . . . . 74.51 30.0 10 3.4 296 ARMSMC BURIED . . . . . . . . 68.41 44.7 38 10.1 377 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.14 20.0 10 5.1 197 ARMSSC1 RELIABLE SIDE CHAINS . 102.20 11.1 9 5.0 180 ARMSSC1 SECONDARY STRUCTURE . . 101.27 16.7 6 8.7 69 ARMSSC1 SURFACE . . . . . . . . 90.58 33.3 3 3.1 96 ARMSSC1 BURIED . . . . . . . . 99.82 14.3 7 6.9 101 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 130.69 0.0 4 4.2 95 ARMSSC2 RELIABLE SIDE CHAINS . 130.69 0.0 4 4.8 83 ARMSSC2 SECONDARY STRUCTURE . . 132.71 0.0 2 6.7 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC2 BURIED . . . . . . . . 130.69 0.0 4 8.0 50 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.27 100.0 1 4.8 21 ARMSSC3 RELIABLE SIDE CHAINS . 3.27 100.0 1 5.6 18 ARMSSC3 SECONDARY STRUCTURE . . 3.27 100.0 1 14.3 7 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 BURIED . . . . . . . . 3.27 100.0 1 14.3 7 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.05 (Number of atoms: 39) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.05 39 11.5 339 CRMSCA CRN = ALL/NP . . . . . 0.2578 CRMSCA SECONDARY STRUCTURE . . 10.11 26 19.1 136 CRMSCA SURFACE . . . . . . . . 10.42 11 7.3 150 CRMSCA BURIED . . . . . . . . 9.90 28 14.8 189 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.20 189 11.5 1642 CRMSMC SECONDARY STRUCTURE . . 10.31 126 19.1 660 CRMSMC SURFACE . . . . . . . . 10.60 55 7.5 734 CRMSMC BURIED . . . . . . . . 10.03 134 14.8 908 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.20 123 11.1 1111 CRMSSC RELIABLE SIDE CHAINS . 13.26 111 11.5 969 CRMSSC SECONDARY STRUCTURE . . 11.67 75 16.6 451 CRMSSC SURFACE . . . . . . . . 13.73 38 7.4 512 CRMSSC BURIED . . . . . . . . 12.95 85 14.2 599 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.54 279 11.3 2467 CRMSALL SECONDARY STRUCTURE . . 10.86 179 18.0 995 CRMSALL SURFACE . . . . . . . . 12.07 82 7.4 1112 CRMSALL BURIED . . . . . . . . 11.32 197 14.5 1355 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.492 1.000 0.500 39 11.5 339 ERRCA SECONDARY STRUCTURE . . 9.651 1.000 0.500 26 19.1 136 ERRCA SURFACE . . . . . . . . 9.926 1.000 0.500 11 7.3 150 ERRCA BURIED . . . . . . . . 9.322 1.000 0.500 28 14.8 189 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.622 1.000 0.500 189 11.5 1642 ERRMC SECONDARY STRUCTURE . . 9.809 1.000 0.500 126 19.1 660 ERRMC SURFACE . . . . . . . . 10.099 1.000 0.500 55 7.5 734 ERRMC BURIED . . . . . . . . 9.426 1.000 0.500 134 14.8 908 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.083 1.000 0.500 123 11.1 1111 ERRSC RELIABLE SIDE CHAINS . 12.137 1.000 0.500 111 11.5 969 ERRSC SECONDARY STRUCTURE . . 10.912 1.000 0.500 75 16.6 451 ERRSC SURFACE . . . . . . . . 12.664 1.000 0.500 38 7.4 512 ERRSC BURIED . . . . . . . . 11.824 1.000 0.500 85 14.2 599 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.643 1.000 0.500 279 11.3 2467 ERRALL SECONDARY STRUCTURE . . 10.242 1.000 0.500 179 18.0 995 ERRALL SURFACE . . . . . . . . 11.207 1.000 0.500 82 7.4 1112 ERRALL BURIED . . . . . . . . 10.408 1.000 0.500 197 14.5 1355 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 21 39 339 DISTCA CA (P) 0.00 0.00 0.00 1.18 6.19 339 DISTCA CA (RMS) 0.00 0.00 0.00 3.88 7.23 DISTCA ALL (N) 0 0 2 24 128 279 2467 DISTALL ALL (P) 0.00 0.00 0.08 0.97 5.19 2467 DISTALL ALL (RMS) 0.00 0.00 2.24 4.12 7.08 DISTALL END of the results output