####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS114_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS114_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 352 - 365 4.86 20.63 LONGEST_CONTINUOUS_SEGMENT: 14 361 - 374 4.81 16.91 LCS_AVERAGE: 42.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 373 - 380 1.98 25.96 LCS_AVERAGE: 18.63 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.99 17.21 LONGEST_CONTINUOUS_SEGMENT: 5 376 - 380 0.80 22.24 LCS_AVERAGE: 12.90 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 12 0 3 3 3 3 3 4 4 5 8 9 9 11 13 14 15 16 16 16 16 LCS_GDT A 352 A 352 3 3 14 3 3 3 3 3 3 4 5 7 8 10 11 14 14 15 15 16 16 16 16 LCS_GDT E 353 E 353 3 4 14 3 3 3 3 4 4 5 6 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT E 354 E 354 3 4 14 3 3 3 3 4 4 5 5 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT L 355 L 355 3 4 14 0 3 3 3 4 4 5 6 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT G 356 G 356 3 4 14 3 3 3 4 4 4 5 6 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT N 357 N 357 3 3 14 3 3 3 4 4 4 6 7 8 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT I 358 I 358 4 6 14 3 4 4 5 6 6 6 8 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT I 359 I 359 4 6 14 3 4 4 5 6 6 6 8 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT V 360 V 360 4 6 14 3 4 4 5 6 6 6 8 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT A 361 A 361 4 6 14 3 4 4 5 6 6 6 8 9 10 11 11 14 14 15 15 16 16 16 16 LCS_GDT W 362 W 362 4 6 14 3 3 4 5 6 7 7 8 9 11 12 12 14 14 15 15 16 16 16 16 LCS_GDT N 363 N 363 4 6 14 3 3 4 5 6 7 8 9 11 11 12 12 14 14 15 15 16 16 16 16 LCS_GDT P 364 P 364 4 4 14 3 3 4 5 5 7 8 9 11 11 12 12 14 14 15 15 16 16 16 16 LCS_GDT N 365 N 365 4 4 14 3 3 4 4 4 5 8 9 11 11 12 12 14 14 15 15 16 16 16 16 LCS_GDT L 366 L 366 3 4 14 3 3 3 3 5 6 8 9 11 11 12 12 12 13 15 15 16 16 16 16 LCS_GDT W 367 W 367 3 5 14 3 3 4 4 5 6 8 9 11 11 12 12 12 13 13 13 13 14 14 16 LCS_GDT K 368 K 368 5 6 14 3 4 5 5 5 6 7 8 11 11 12 12 12 13 13 13 13 14 14 16 LCS_GDT K 369 K 369 5 6 14 3 4 5 5 5 7 8 9 11 11 12 12 12 13 13 13 13 14 14 16 LCS_GDT G 370 G 370 5 6 14 3 4 5 5 5 7 8 9 11 11 12 12 12 13 13 13 13 14 14 16 LCS_GDT T 371 T 371 5 6 14 3 4 5 5 5 7 8 9 11 11 12 12 12 13 13 13 13 14 14 16 LCS_GDT N 372 N 372 5 7 14 3 4 5 5 7 7 8 9 11 11 12 12 12 13 13 13 13 14 14 16 LCS_GDT G 373 G 373 4 8 14 4 4 4 5 7 8 8 9 11 11 12 12 12 13 13 13 13 14 14 14 LCS_GDT Y 374 Y 374 4 8 14 4 4 4 5 7 8 8 9 9 10 11 11 12 12 12 13 13 14 14 14 LCS_GDT P 375 P 375 4 8 11 4 4 5 6 7 8 8 9 9 9 9 10 10 10 11 11 12 12 13 13 LCS_GDT I 376 I 376 5 8 11 4 4 5 6 7 8 8 9 9 9 9 10 10 10 11 11 12 12 13 13 LCS_GDT F 377 F 377 5 8 11 3 4 5 6 7 8 8 9 9 9 9 10 10 10 11 11 12 12 13 13 LCS_GDT Q 378 Q 378 5 8 11 3 4 5 6 7 8 8 9 9 9 9 10 10 10 11 11 11 12 13 13 LCS_GDT W 379 W 379 5 8 11 3 4 5 6 6 8 8 9 9 9 9 10 10 10 11 11 12 12 13 13 LCS_GDT S 380 S 380 5 8 11 1 4 5 6 6 8 8 9 9 9 9 10 10 10 11 11 12 12 13 13 LCS_GDT E 381 E 381 3 6 11 0 3 3 3 3 7 8 9 9 9 9 10 10 10 11 11 12 12 13 13 LCS_AVERAGE LCS_A: 24.77 ( 12.90 18.63 42.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 7 8 8 9 11 11 12 12 14 14 15 15 16 16 16 16 GDT PERCENT_AT 12.90 12.90 16.13 19.35 22.58 25.81 25.81 29.03 35.48 35.48 38.71 38.71 45.16 45.16 48.39 48.39 51.61 51.61 51.61 51.61 GDT RMS_LOCAL 0.39 0.39 0.80 1.08 1.90 1.98 1.98 2.58 3.36 3.36 3.73 3.73 4.86 4.86 5.27 5.27 5.57 5.57 5.57 5.57 GDT RMS_ALL_AT 27.85 27.85 22.24 22.98 28.85 25.96 25.96 24.36 17.22 17.22 17.08 17.08 20.63 20.63 18.37 18.37 17.73 17.73 17.73 17.73 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 33.517 0 0.035 0.032 34.747 0.000 0.000 LGA A 352 A 352 31.716 0 0.627 0.604 33.062 0.000 0.000 LGA E 353 E 353 28.192 0 0.611 1.073 28.676 0.000 0.000 LGA E 354 E 354 29.388 0 0.617 0.608 31.494 0.000 0.000 LGA L 355 L 355 30.181 0 0.608 0.627 33.665 0.000 0.000 LGA G 356 G 356 31.637 0 0.630 0.630 31.637 0.000 0.000 LGA N 357 N 357 29.736 0 0.604 0.569 33.427 0.000 0.000 LGA I 358 I 358 31.552 0 0.612 0.808 32.999 0.000 0.000 LGA I 359 I 359 35.602 0 0.591 0.621 38.498 0.000 0.000 LGA V 360 V 360 35.384 0 0.359 0.506 37.072 0.000 0.000 LGA A 361 A 361 32.744 0 0.123 0.124 33.263 0.000 0.000 LGA W 362 W 362 32.713 0 0.624 1.082 36.191 0.000 0.000 LGA N 363 N 363 34.443 0 0.284 0.762 36.447 0.000 0.000 LGA P 364 P 364 32.624 0 0.694 0.766 34.594 0.000 0.000 LGA N 365 N 365 32.643 0 0.701 0.626 33.965 0.000 0.000 LGA L 366 L 366 29.917 0 0.589 0.619 31.090 0.000 0.000 LGA W 367 W 367 24.824 0 0.591 1.280 26.826 0.000 0.000 LGA K 368 K 368 21.819 0 0.450 1.091 27.058 0.000 0.000 LGA K 369 K 369 16.751 0 0.056 0.946 18.896 0.000 0.000 LGA G 370 G 370 13.240 0 0.131 0.131 13.961 0.000 0.000 LGA T 371 T 371 15.051 0 0.123 1.107 18.684 0.000 0.000 LGA N 372 N 372 10.067 0 0.695 0.881 12.164 5.833 3.274 LGA G 373 G 373 2.921 0 0.677 0.677 5.456 51.310 51.310 LGA Y 374 Y 374 1.106 0 0.029 0.215 3.408 81.429 70.754 LGA P 375 P 375 2.472 0 0.104 0.357 3.598 57.738 54.490 LGA I 376 I 376 3.982 0 0.533 1.359 5.750 43.690 38.512 LGA F 377 F 377 1.724 0 0.129 1.062 2.732 75.238 70.087 LGA Q 378 Q 378 2.688 0 0.105 0.291 7.973 62.976 38.413 LGA W 379 W 379 1.031 0 0.751 1.315 7.362 71.905 56.735 LGA S 380 S 380 2.310 0 0.599 0.563 6.727 73.214 57.222 LGA E 381 E 381 3.434 0 0.532 1.129 7.223 48.690 33.095 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 13.127 13.032 14.297 18.452 15.287 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.58 27.419 26.303 0.335 LGA_LOCAL RMSD: 2.584 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 24.355 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 13.127 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.303287 * X + 0.903730 * Y + -0.302141 * Z + 2.305242 Y_new = 0.298666 * X + 0.391253 * Y + 0.870471 * Z + 32.336258 Z_new = 0.904884 * X + 0.173763 * Y + -0.388576 * Z + 47.922302 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.363870 -1.131108 2.721087 [DEG: 135.4398 -64.8077 155.9068 ] ZXZ: -2.807503 1.969882 1.381078 [DEG: -160.8581 112.8659 79.1299 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS114_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS114_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.58 26.303 13.13 REMARK ---------------------------------------------------------- MOLECULE T0537TS114_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2iq7A 1nhcA 1ia5A 3jurA 2uvfA 1rmgA 1k5cA 1hg8A 1czfA 1bheA ATOM 2529 N SER 351 -22.022 18.318 70.689 1.00 24.70 N ATOM 2530 CA SER 351 -22.298 16.994 70.207 1.00 24.91 C ATOM 2531 C SER 351 -20.998 16.285 69.997 1.00 24.62 C ATOM 2532 O SER 351 -19.940 16.910 69.924 1.00 24.38 O ATOM 2533 CB SER 351 -23.064 17.054 68.883 1.00 25.27 C ATOM 2534 OG SER 351 -22.260 17.599 67.852 1.00 33.37 O ATOM 2535 N ALA 352 -21.049 14.938 69.919 1.00 24.97 N ATOM 2536 CA ALA 352 -19.854 14.186 69.663 1.00 25.08 C ATOM 2537 C ALA 352 -20.155 13.235 68.546 1.00 24.83 C ATOM 2538 O ALA 352 -21.195 12.577 68.541 1.00 25.07 O ATOM 2539 CB ALA 352 -19.437 13.415 70.906 1.00 25.97 C ATOM 2540 N GLU 353 -19.235 13.139 67.565 1.00 24.86 N ATOM 2541 CA GLU 353 -19.404 12.256 66.453 1.00 25.19 C ATOM 2542 C GLU 353 -18.508 11.084 66.689 1.00 25.31 C ATOM 2543 O GLU 353 -17.303 11.241 66.886 1.00 25.58 O ATOM 2544 CB GLU 353 -19.026 12.958 65.148 1.00 25.92 C ATOM 2545 CG GLU 353 -19.166 12.087 63.911 1.00 36.20 C ATOM 2546 CD GLU 353 -18.769 12.812 62.639 1.00 38.26 C ATOM 2547 OE1 GLU 353 -18.381 13.995 62.727 1.00 43.67 O ATOM 2548 OE2 GLU 353 -18.846 12.195 61.556 1.00 49.34 O ATOM 2549 N GLU 354 -19.091 9.873 66.677 1.00 26.84 N ATOM 2550 CA GLU 354 -18.342 8.674 66.904 1.00 28.12 C ATOM 2551 C GLU 354 -17.821 8.209 65.584 1.00 26.68 C ATOM 2552 O GLU 354 -18.310 8.619 64.533 1.00 25.96 O ATOM 2553 CB GLU 354 -19.233 7.595 67.522 1.00 31.01 C ATOM 2554 CG GLU 354 -19.767 7.945 68.901 1.00 41.38 C ATOM 2555 CD GLU 354 -20.642 6.852 69.481 1.00 50.58 C ATOM 2556 OE1 GLU 354 -20.902 5.858 68.771 1.00 57.00 O ATOM 2557 OE2 GLU 354 -21.070 6.990 70.647 1.00 59.49 O ATOM 2558 N LEU 355 -16.795 7.338 65.613 1.00 27.38 N ATOM 2559 CA LEU 355 -16.173 6.880 64.406 1.00 27.42 C ATOM 2560 C LEU 355 -17.092 6.012 63.622 1.00 26.74 C ATOM 2561 O LEU 355 -17.928 5.290 64.161 1.00 27.34 O ATOM 2562 CB LEU 355 -14.914 6.070 64.725 1.00 29.60 C ATOM 2563 CG LEU 355 -13.743 6.848 65.330 1.00 36.21 C ATOM 2564 CD1 LEU 355 -12.655 5.898 65.804 1.00 58.04 C ATOM 2565 CD2 LEU 355 -13.136 7.791 64.303 1.00 48.32 C ATOM 2566 N GLY 356 -16.946 6.112 62.287 1.00 26.47 N ATOM 2567 CA GLY 356 -17.691 5.346 61.338 1.00 26.68 C ATOM 2568 C GLY 356 -17.001 5.573 60.034 1.00 26.19 C ATOM 2569 O GLY 356 -16.350 6.597 59.841 1.00 26.96 O ATOM 2570 N ASN 357 -17.126 4.620 59.097 1.00 26.56 N ATOM 2571 CA ASN 357 -16.471 4.784 57.837 1.00 26.38 C ATOM 2572 C ASN 357 -17.251 5.790 57.060 1.00 25.80 C ATOM 2573 O ASN 357 -18.467 5.905 57.203 1.00 26.97 O ATOM 2574 CB ASN 357 -16.427 3.455 57.080 1.00 28.24 C ATOM 2575 CG ASN 357 -15.479 2.456 57.712 1.00 35.58 C ATOM 2576 OD1 ASN 357 -14.556 2.832 58.435 1.00 46.33 O ATOM 2577 ND2 ASN 357 -15.705 1.175 57.443 1.00 49.19 N ATOM 2578 N ILE 358 -16.553 6.567 56.216 1.00 25.29 N ATOM 2579 CA ILE 358 -17.244 7.541 55.432 1.00 25.85 C ATOM 2580 C ILE 358 -17.214 7.035 54.029 1.00 25.52 C ATOM 2581 O ILE 358 -16.168 6.638 53.520 1.00 25.38 O ATOM 2582 CB ILE 358 -16.562 8.920 55.517 1.00 27.69 C ATOM 2583 CG1 ILE 358 -16.377 9.335 56.977 1.00 35.14 C ATOM 2584 CG2 ILE 358 -17.407 9.975 54.819 1.00 33.25 C ATOM 2585 CD1 ILE 358 -17.673 9.448 57.749 1.00 41.72 C ATOM 2586 N ILE 359 -18.386 7.016 53.371 1.00 26.45 N ATOM 2587 CA ILE 359 -18.462 6.509 52.035 1.00 27.11 C ATOM 2588 C ILE 359 -17.847 7.509 51.112 1.00 26.33 C ATOM 2589 O ILE 359 -17.981 8.716 51.307 1.00 26.58 O ATOM 2590 CB ILE 359 -19.921 6.264 51.606 1.00 29.46 C ATOM 2591 CG1 ILE 359 -20.550 5.162 52.460 1.00 40.93 C ATOM 2592 CG2 ILE 359 -19.982 5.837 50.147 1.00 44.13 C ATOM 2593 CD1 ILE 359 -22.047 5.033 52.284 1.00 47.21 C ATOM 2594 N VAL 360 -17.106 6.989 50.109 1.00 26.02 N ATOM 2595 CA VAL 360 -16.433 7.709 49.061 1.00 25.61 C ATOM 2596 C VAL 360 -15.484 8.713 49.628 1.00 24.42 C ATOM 2597 O VAL 360 -15.288 9.787 49.060 1.00 24.47 O ATOM 2598 CB VAL 360 -17.431 8.463 48.163 1.00 27.01 C ATOM 2599 CG1 VAL 360 -16.776 8.854 46.848 1.00 32.64 C ATOM 2600 CG2 VAL 360 -18.639 7.591 47.858 1.00 32.16 C ATOM 2601 N ALA 361 -14.866 8.384 50.775 1.00 23.69 N ATOM 2602 CA ALA 361 -13.879 9.240 51.363 1.00 22.99 C ATOM 2603 C ALA 361 -12.681 9.269 50.462 1.00 22.55 C ATOM 2604 O ALA 361 -12.037 10.304 50.295 1.00 22.29 O ATOM 2605 CB ALA 361 -13.474 8.718 52.733 1.00 23.07 C ATOM 2606 N TRP 362 -12.372 8.108 49.851 1.00 23.06 N ATOM 2607 CA TRP 362 -11.188 7.909 49.061 1.00 23.47 C ATOM 2608 C TRP 362 -11.103 8.924 47.967 1.00 22.69 C ATOM 2609 O TRP 362 -12.083 9.213 47.282 1.00 23.07 O ATOM 2610 CB TRP 362 -11.196 6.518 48.424 1.00 26.11 C ATOM 2611 CG TRP 362 -11.049 5.404 49.415 1.00 35.36 C ATOM 2612 CD1 TRP 362 -12.022 4.538 49.824 1.00 48.41 C ATOM 2613 CD2 TRP 362 -9.859 5.036 50.122 1.00 52.80 C ATOM 2614 NE1 TRP 362 -11.512 3.652 50.743 1.00 59.98 N ATOM 2615 CE2 TRP 362 -10.185 3.937 50.944 1.00 62.94 C ATOM 2616 CE3 TRP 362 -8.550 5.528 50.141 1.00 66.99 C ATOM 2617 CZ2 TRP 362 -9.245 3.320 51.778 1.00 78.69 C ATOM 2618 CZ3 TRP 362 -7.625 4.917 50.965 1.00 82.47 C ATOM 2619 CH2 TRP 362 -7.975 3.826 51.772 1.00 85.50 H ATOM 2620 N ASN 363 -9.894 9.500 47.798 1.00 22.46 N ATOM 2621 CA ASN 363 -9.635 10.464 46.769 1.00 22.36 C ATOM 2622 C ASN 363 -8.246 10.212 46.256 1.00 22.54 C ATOM 2623 O ASN 363 -7.415 9.616 46.938 1.00 22.85 O ATOM 2624 CB ASN 363 -9.738 11.885 47.327 1.00 22.64 C ATOM 2625 CG ASN 363 -8.672 12.182 48.363 1.00 37.19 C ATOM 2626 OD1 ASN 363 -7.490 12.288 48.038 1.00 54.99 O ATOM 2627 ND2 ASN 363 -9.089 12.318 49.617 1.00 50.97 N ATOM 2628 N PRO 364 -8.002 10.647 45.046 1.00 22.95 N ATOM 2629 CA PRO 364 -6.710 10.468 44.426 1.00 23.41 C ATOM 2630 C PRO 364 -5.677 11.415 44.958 1.00 22.59 C ATOM 2631 O PRO 364 -6.032 12.341 45.685 1.00 21.93 O ATOM 2632 CB PRO 364 -6.972 10.731 42.941 1.00 24.61 C ATOM 2633 CG PRO 364 -8.081 11.730 42.930 1.00 25.93 C ATOM 2634 CD PRO 364 -8.988 11.360 44.070 1.00 23.77 C ATOM 2635 N ASN 365 -4.386 11.189 44.616 1.00 23.16 N ATOM 2636 CA ASN 365 -3.318 12.028 45.089 1.00 22.91 C ATOM 2637 C ASN 365 -2.650 12.680 43.916 1.00 23.60 C ATOM 2638 O ASN 365 -2.774 12.222 42.780 1.00 25.29 O ATOM 2639 CB ASN 365 -2.286 11.199 45.856 1.00 24.69 C ATOM 2640 CG ASN 365 -2.882 10.491 47.056 1.00 46.00 C ATOM 2641 OD1 ASN 365 -3.305 11.129 48.020 1.00 59.10 O ATOM 2642 ND2 ASN 365 -2.921 9.165 47.000 1.00 69.30 N ATOM 2643 N LEU 366 -1.929 13.793 44.178 1.00 23.06 N ATOM 2644 CA LEU 366 -1.248 14.521 43.145 1.00 24.87 C ATOM 2645 C LEU 366 0.170 14.062 43.112 1.00 25.89 C ATOM 2646 O LEU 366 0.787 13.779 44.139 1.00 25.68 O ATOM 2647 CB LEU 366 -1.297 16.023 43.427 1.00 25.31 C ATOM 2648 CG LEU 366 -0.642 16.931 42.383 1.00 32.65 C ATOM 2649 CD1 LEU 366 -1.412 16.883 41.072 1.00 37.92 C ATOM 2650 CD2 LEU 366 -0.615 18.372 42.865 1.00 48.12 C ATOM 2651 N TRP 367 0.719 13.985 41.889 1.00 29.62 N ATOM 2652 CA TRP 367 2.034 13.470 41.688 1.00 32.12 C ATOM 2653 C TRP 367 3.035 14.361 42.350 1.00 29.14 C ATOM 2654 O TRP 367 3.976 13.872 42.973 1.00 29.36 O ATOM 2655 CB TRP 367 2.356 13.393 40.194 1.00 37.51 C ATOM 2656 CG TRP 367 3.727 12.867 39.903 1.00 52.30 C ATOM 2657 CD1 TRP 367 4.801 13.579 39.449 1.00 72.07 C ATOM 2658 CD2 TRP 367 4.175 11.513 40.044 1.00 61.40 C ATOM 2659 NE1 TRP 367 5.889 12.755 39.299 1.00 79.05 N ATOM 2660 CE2 TRP 367 5.531 11.479 39.659 1.00 73.66 C ATOM 2661 CE3 TRP 367 3.562 10.327 40.460 1.00 69.83 C ATOM 2662 CZ2 TRP 367 6.287 10.301 39.677 1.00 84.29 C ATOM 2663 CZ3 TRP 367 4.311 9.165 40.476 1.00 84.50 C ATOM 2664 CH2 TRP 367 5.656 9.160 40.089 1.00 88.13 H ATOM 2665 N LYS 368 2.865 15.695 42.254 1.00 27.22 N ATOM 2666 CA LYS 368 3.889 16.543 42.793 1.00 24.48 C ATOM 2667 C LYS 368 3.629 16.840 44.233 1.00 25.94 C ATOM 2668 O LYS 368 3.508 17.999 44.627 1.00 35.43 O ATOM 2669 CB LYS 368 3.943 17.869 42.032 1.00 27.65 C ATOM 2670 CG LYS 368 4.256 17.723 40.552 1.00 40.42 C ATOM 2671 CD LYS 368 5.629 17.106 40.336 1.00 46.41 C ATOM 2672 CE LYS 368 6.004 17.096 38.863 1.00 49.80 C ATOM 2673 NZ LYS 368 7.322 16.443 38.630 1.00 58.87 N ATOM 2674 N LYS 369 3.574 15.794 45.074 1.00 24.37 N ATOM 2675 CA LYS 369 3.440 16.037 46.477 1.00 24.15 C ATOM 2676 C LYS 369 4.832 16.327 46.928 1.00 23.51 C ATOM 2677 O LYS 369 5.777 15.725 46.423 1.00 26.48 O ATOM 2678 CB LYS 369 2.861 14.807 47.181 1.00 27.50 C ATOM 2679 CG LYS 369 3.775 13.594 47.161 1.00 32.42 C ATOM 2680 CD LYS 369 3.164 12.430 47.923 1.00 39.46 C ATOM 2681 CE LYS 369 4.110 11.242 47.969 1.00 39.59 C ATOM 2682 NZ LYS 369 3.518 10.087 48.699 1.00 55.36 N ATOM 2683 N GLY 370 5.012 17.274 47.868 1.00 24.18 N ATOM 2684 CA GLY 370 6.350 17.558 48.294 1.00 25.49 C ATOM 2685 C GLY 370 6.865 16.349 49.001 1.00 24.95 C ATOM 2686 O GLY 370 6.259 15.874 49.960 1.00 23.92 O ATOM 2687 N THR 371 8.014 15.821 48.542 1.00 28.00 N ATOM 2688 CA THR 371 8.576 14.669 49.179 1.00 30.04 C ATOM 2689 C THR 371 9.010 15.059 50.554 1.00 29.05 C ATOM 2690 O THR 371 8.676 14.393 51.533 1.00 30.79 O ATOM 2691 CB THR 371 9.791 14.130 48.402 1.00 34.13 C ATOM 2692 OG1 THR 371 9.381 13.724 47.090 1.00 44.34 O ATOM 2693 CG2 THR 371 10.397 12.935 49.121 1.00 37.23 C ATOM 2694 N ASN 372 9.751 16.180 50.658 1.00 27.59 N ATOM 2695 CA ASN 372 10.243 16.620 51.930 1.00 27.26 C ATOM 2696 C ASN 372 10.083 18.104 51.982 1.00 25.44 C ATOM 2697 O ASN 372 9.826 18.750 50.967 1.00 25.54 O ATOM 2698 CB ASN 372 11.718 16.246 52.092 1.00 29.36 C ATOM 2699 CG ASN 372 12.602 16.901 51.049 1.00 35.50 C ATOM 2700 OD1 ASN 372 12.679 18.127 50.966 1.00 44.45 O ATOM 2701 ND2 ASN 372 13.275 16.082 50.247 1.00 42.47 N ATOM 2702 N GLY 373 10.216 18.677 53.194 1.00 25.47 N ATOM 2703 CA GLY 373 10.128 20.097 53.362 1.00 25.17 C ATOM 2704 C GLY 373 11.510 20.644 53.188 1.00 25.08 C ATOM 2705 O GLY 373 12.431 19.921 52.811 1.00 25.46 O ATOM 2706 N TYR 374 11.695 21.950 53.470 1.00 25.72 N ATOM 2707 CA TYR 374 12.995 22.533 53.307 1.00 26.38 C ATOM 2708 C TYR 374 13.526 22.835 54.673 1.00 26.00 C ATOM 2709 O TYR 374 12.940 23.586 55.451 1.00 26.90 O ATOM 2710 CB TYR 374 12.908 23.819 52.484 1.00 28.43 C ATOM 2711 CG TYR 374 12.508 23.598 51.042 1.00 30.31 C ATOM 2712 CD1 TYR 374 11.170 23.524 50.678 1.00 47.70 C ATOM 2713 CD2 TYR 374 13.471 23.463 50.050 1.00 44.66 C ATOM 2714 CE1 TYR 374 10.795 23.322 49.364 1.00 50.62 C ATOM 2715 CE2 TYR 374 13.114 23.260 48.730 1.00 45.21 C ATOM 2716 CZ TYR 374 11.763 23.191 48.392 1.00 36.16 C ATOM 2717 OH TYR 374 11.394 22.989 47.083 1.00 39.77 H ATOM 2718 N PRO 375 14.641 22.236 54.969 1.00 27.01 N ATOM 2719 CA PRO 375 15.243 22.429 56.261 1.00 28.08 C ATOM 2720 C PRO 375 15.967 23.733 56.330 1.00 28.39 C ATOM 2721 O PRO 375 16.133 24.381 55.298 1.00 30.51 O ATOM 2722 CB PRO 375 16.205 21.248 56.401 1.00 32.67 C ATOM 2723 CG PRO 375 16.643 20.956 55.006 1.00 34.45 C ATOM 2724 CD PRO 375 15.440 21.185 54.134 1.00 29.68 C ATOM 2725 N ILE 376 16.386 24.148 57.541 1.00 29.46 N ATOM 2726 CA ILE 376 17.163 25.345 57.638 1.00 31.70 C ATOM 2727 C ILE 376 18.378 25.044 56.828 1.00 37.60 C ATOM 2728 O ILE 376 18.798 25.869 56.019 1.00 42.89 O ATOM 2729 CB ILE 376 17.527 25.665 59.099 1.00 34.69 C ATOM 2730 CG1 ILE 376 16.280 26.095 59.877 1.00 49.60 C ATOM 2731 CG2 ILE 376 18.544 26.794 59.159 1.00 47.55 C ATOM 2732 CD1 ILE 376 16.491 26.167 61.374 1.00 55.94 C ATOM 2733 N PHE 377 18.953 23.842 57.066 1.00 40.32 N ATOM 2734 CA PHE 377 20.062 23.245 56.367 1.00 49.15 C ATOM 2735 C PHE 377 21.028 22.829 57.428 1.00 52.72 C ATOM 2736 O PHE 377 20.735 22.941 58.617 1.00 54.61 O ATOM 2737 CB PHE 377 20.701 24.256 55.413 1.00 48.76 C ATOM 2738 CG PHE 377 21.850 23.701 54.621 1.00 59.40 C ATOM 2739 CD1 PHE 377 21.625 22.895 53.520 1.00 67.68 C ATOM 2740 CD2 PHE 377 23.157 23.986 54.979 1.00 72.54 C ATOM 2741 CE1 PHE 377 22.682 22.383 52.792 1.00 80.08 C ATOM 2742 CE2 PHE 377 24.214 23.475 54.249 1.00 83.58 C ATOM 2743 CZ PHE 377 23.981 22.677 53.161 1.00 85.25 C ATOM 2744 N GLN 378 22.204 22.314 57.028 1.00 60.18 N ATOM 2745 CA GLN 378 23.196 21.978 58.005 1.00 66.29 C ATOM 2746 C GLN 378 23.499 23.271 58.674 1.00 58.48 C ATOM 2747 O GLN 378 23.646 23.347 59.892 1.00 65.86 O ATOM 2748 CB GLN 378 24.436 21.389 57.330 1.00 72.90 C ATOM 2749 CG GLN 378 24.225 20.000 56.748 1.00 80.42 C ATOM 2750 CD GLN 378 25.437 19.496 55.990 1.00 83.73 C ATOM 2751 OE1 GLN 378 26.418 20.220 55.815 1.00 89.06 O ATOM 2752 NE2 GLN 378 25.373 18.249 55.537 1.00 86.34 N ATOM 2753 N TRP 379 23.576 24.335 57.856 1.00 48.25 N ATOM 2754 CA TRP 379 23.773 25.662 58.345 1.00 45.70 C ATOM 2755 C TRP 379 22.500 26.355 58.002 1.00 39.15 C ATOM 2756 O TRP 379 21.592 25.743 57.443 1.00 37.22 O ATOM 2757 CB TRP 379 24.978 26.312 57.661 1.00 47.33 C ATOM 2758 CG TRP 379 26.270 25.596 57.913 1.00 56.03 C ATOM 2759 CD1 TRP 379 26.795 24.570 57.181 1.00 66.39 C ATOM 2760 CD2 TRP 379 27.200 25.851 58.973 1.00 63.65 C ATOM 2761 NE1 TRP 379 27.994 24.170 57.717 1.00 72.75 N ATOM 2762 CE2 TRP 379 28.265 24.942 58.819 1.00 70.30 C ATOM 2763 CE3 TRP 379 27.234 26.760 60.035 1.00 73.00 C ATOM 2764 CZ2 TRP 379 29.360 24.915 59.693 1.00 78.11 C ATOM 2765 CZ3 TRP 379 28.315 26.731 60.895 1.00 82.95 C ATOM 2766 CH2 TRP 379 29.362 25.817 60.721 1.00 83.33 H ATOM 2767 N SER 380 22.382 27.646 58.356 1.00 43.17 N ATOM 2768 CA SER 380 21.179 28.343 58.030 1.00 42.06 C ATOM 2769 C SER 380 21.065 28.281 56.546 1.00 39.76 C ATOM 2770 O SER 380 19.976 28.114 56.000 1.00 48.16 O ATOM 2771 CB SER 380 21.254 29.794 58.510 1.00 53.51 C ATOM 2772 OG SER 380 21.298 29.862 59.924 1.00 63.17 O ATOM 2773 N GLU 381 22.212 28.388 55.852 1.00 43.38 N ATOM 2774 CA GLU 381 22.193 28.345 54.426 1.00 50.05 C ATOM 2775 C GLU 381 21.767 26.951 53.997 1.00 49.32 C ATOM 2776 O GLU 381 20.674 26.839 53.378 1.00 49.35 O ATOM 2777 CB GLU 381 23.582 28.652 53.861 1.00 63.26 C ATOM 2778 CG GLU 381 24.099 30.040 54.206 1.00 72.70 C ATOM 2779 CD GLU 381 25.527 30.260 53.751 1.00 82.94 C ATOM 2780 OE1 GLU 381 26.122 29.318 53.186 1.00 86.64 O ATOM 2781 OE2 GLU 381 26.052 31.374 53.957 1.00 88.60 O ATOM 2782 OXT GLU 381 22.524 25.984 54.278 1.00 59.28 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 102.25 45.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 116.91 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 103.76 46.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 94.35 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.87 57.7 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 75.15 56.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 12.55 100.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 77.45 56.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 36.14 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.32 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 87.27 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 69.94 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 79.41 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 52.02 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 32.80 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 31.19 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 7.91 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 32.80 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.77 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 0.77 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.77 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.13 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.13 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.4234 CRMSCA SECONDARY STRUCTURE . . 12.86 11 100.0 11 CRMSCA SURFACE . . . . . . . . 12.83 26 100.0 26 CRMSCA BURIED . . . . . . . . 14.58 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.17 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 12.85 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.92 129 100.0 129 CRMSMC BURIED . . . . . . . . 14.47 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 15.70 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 15.94 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 13.62 41 100.0 41 CRMSSC SURFACE . . . . . . . . 15.45 120 100.0 120 CRMSSC BURIED . . . . . . . . 18.44 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.46 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 13.21 85 100.0 85 CRMSALL SURFACE . . . . . . . . 14.30 224 100.0 224 CRMSALL BURIED . . . . . . . . 15.62 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.529 0.414 0.501 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 13.195 0.350 0.434 11 100.0 11 ERRCA SURFACE . . . . . . . . 18.558 0.435 0.531 26 100.0 26 ERRCA BURIED . . . . . . . . 12.179 0.301 0.347 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.952 0.419 0.509 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 13.289 0.353 0.446 54 100.0 54 ERRMC SURFACE . . . . . . . . 18.932 0.438 0.533 129 100.0 129 ERRMC BURIED . . . . . . . . 12.452 0.308 0.377 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 36.165 0.538 0.615 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 35.546 0.527 0.606 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 30.775 0.516 0.595 41 100.0 41 ERRSC SURFACE . . . . . . . . 37.789 0.557 0.635 120 100.0 120 ERRSC BURIED . . . . . . . . 16.669 0.306 0.379 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 26.999 0.477 0.561 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 21.545 0.428 0.516 85 100.0 85 ERRALL SURFACE . . . . . . . . 28.758 0.499 0.584 224 100.0 224 ERRALL BURIED . . . . . . . . 13.860 0.311 0.387 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 2 7 31 31 DISTCA CA (P) 0.00 0.00 0.00 6.45 22.58 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.34 6.88 DISTCA ALL (N) 0 0 1 11 47 254 254 DISTALL ALL (P) 0.00 0.00 0.39 4.33 18.50 254 DISTALL ALL (RMS) 0.00 0.00 2.88 4.21 6.70 DISTALL END of the results output