####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS113_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS113_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 352 - 376 4.98 8.74 LCS_AVERAGE: 72.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.89 15.88 LCS_AVERAGE: 17.27 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.84 9.30 LCS_AVERAGE: 11.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 3 3 3 6 7 8 9 9 9 11 14 15 16 23 24 24 27 LCS_GDT A 352 A 352 3 3 25 3 3 3 3 4 7 8 10 14 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT E 353 E 353 3 3 25 3 3 3 3 6 8 9 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT E 354 E 354 3 4 25 3 3 4 4 5 6 9 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT L 355 L 355 3 4 25 3 5 5 5 6 8 9 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT G 356 G 356 3 4 25 3 3 4 4 4 5 7 11 13 15 17 18 21 24 24 24 25 26 27 27 LCS_GDT N 357 N 357 3 4 25 3 5 5 6 6 9 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT I 358 I 358 3 4 25 3 3 4 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT I 359 I 359 3 5 25 3 3 5 6 6 8 8 11 13 15 18 21 22 24 24 24 25 26 27 27 LCS_GDT V 360 V 360 3 5 25 3 3 5 5 5 5 6 8 9 10 13 13 15 18 19 24 25 25 27 27 LCS_GDT A 361 A 361 3 6 25 3 3 5 5 5 8 9 11 13 15 18 21 22 24 24 24 25 26 27 27 LCS_GDT W 362 W 362 3 6 25 3 3 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT N 363 N 363 4 6 25 3 3 5 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT P 364 P 364 4 6 25 4 4 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT N 365 N 365 4 6 25 4 4 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT L 366 L 366 4 7 25 4 4 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT W 367 W 367 3 7 25 3 3 4 5 6 7 9 10 11 15 17 19 22 24 24 24 25 26 27 27 LCS_GDT K 368 K 368 4 7 25 3 4 4 5 6 8 9 10 12 15 17 21 22 24 24 24 25 26 27 27 LCS_GDT K 369 K 369 4 7 25 3 4 4 5 6 8 9 10 13 15 18 21 22 24 24 24 25 26 27 27 LCS_GDT G 370 G 370 4 7 25 3 4 4 5 6 9 10 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT T 371 T 371 4 7 25 3 5 5 5 7 9 10 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT N 372 N 372 5 7 25 3 5 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT G 373 G 373 5 6 25 4 5 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT Y 374 Y 374 5 6 25 3 4 5 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT P 375 P 375 5 6 25 2 4 5 6 7 10 11 12 14 16 18 21 22 24 24 24 25 26 27 27 LCS_GDT I 376 I 376 5 6 25 3 4 5 6 6 8 9 12 13 15 17 19 21 24 24 24 25 26 27 27 LCS_GDT F 377 F 377 4 6 17 3 4 5 6 6 8 9 9 12 14 15 17 20 20 21 23 24 26 27 27 LCS_GDT Q 378 Q 378 4 5 12 3 4 5 6 6 7 9 9 12 14 15 17 20 20 21 23 24 26 27 27 LCS_GDT W 379 W 379 3 5 12 3 3 3 4 5 6 7 8 8 14 15 15 16 18 18 20 20 23 25 25 LCS_GDT S 380 S 380 3 4 12 3 3 3 4 5 6 7 9 10 14 15 16 16 18 18 20 20 23 25 25 LCS_GDT E 381 E 381 3 4 12 3 3 3 4 5 6 7 9 10 14 15 16 16 18 18 20 20 23 25 25 LCS_AVERAGE LCS_A: 33.96 ( 11.76 17.27 72.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 9 10 11 12 15 16 18 21 22 24 24 24 25 26 27 27 GDT PERCENT_AT 12.90 16.13 19.35 22.58 29.03 32.26 35.48 38.71 48.39 51.61 58.06 67.74 70.97 77.42 77.42 77.42 80.65 83.87 87.10 87.10 GDT RMS_LOCAL 0.28 0.67 0.96 1.24 1.61 1.84 2.23 2.53 3.31 3.43 3.75 4.20 4.32 4.69 4.69 4.69 4.98 5.48 5.68 5.68 GDT RMS_ALL_AT 8.15 14.20 8.31 8.37 8.44 8.46 8.15 8.70 8.67 8.60 8.83 9.00 9.00 8.74 8.74 8.74 8.74 8.16 8.16 8.16 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 13.997 0 0.529 0.505 16.517 0.000 0.000 LGA A 352 A 352 8.028 0 0.614 0.578 10.039 7.024 7.048 LGA E 353 E 353 7.546 0 0.588 1.218 10.332 6.071 4.444 LGA E 354 E 354 6.845 0 0.616 1.496 9.895 18.571 10.053 LGA L 355 L 355 3.683 0 0.616 0.634 7.840 37.976 28.155 LGA G 356 G 356 6.955 0 0.380 0.380 8.414 15.714 15.714 LGA N 357 N 357 5.969 0 0.586 1.046 10.594 32.024 18.869 LGA I 358 I 358 2.608 0 0.580 0.582 4.990 43.810 50.893 LGA I 359 I 359 5.660 0 0.594 0.921 8.270 23.333 18.333 LGA V 360 V 360 9.799 0 0.285 0.321 13.983 2.381 1.361 LGA A 361 A 361 6.671 0 0.633 0.635 8.564 29.405 24.095 LGA W 362 W 362 2.960 0 0.546 1.203 8.167 60.119 35.782 LGA N 363 N 363 1.613 0 0.239 1.257 3.202 77.381 67.381 LGA P 364 P 364 0.661 0 0.057 0.137 1.798 90.595 86.735 LGA N 365 N 365 0.787 0 0.595 0.499 2.096 86.429 82.857 LGA L 366 L 366 1.804 0 0.590 1.030 4.383 65.000 55.060 LGA W 367 W 367 6.760 0 0.517 1.394 16.268 17.024 4.966 LGA K 368 K 368 6.657 0 0.140 0.634 8.027 13.452 11.058 LGA K 369 K 369 7.100 0 0.139 0.747 11.393 20.476 10.582 LGA G 370 G 370 4.582 0 0.385 0.385 7.255 22.262 22.262 LGA T 371 T 371 5.313 0 0.673 0.624 9.020 34.524 22.789 LGA N 372 N 372 1.032 0 0.317 1.241 6.312 69.762 52.738 LGA G 373 G 373 0.530 0 0.606 0.606 1.871 88.452 88.452 LGA Y 374 Y 374 2.474 0 0.143 1.216 11.510 52.738 26.825 LGA P 375 P 375 3.546 0 0.679 0.625 7.149 36.071 50.816 LGA I 376 I 376 6.242 0 0.291 1.367 8.004 17.857 18.452 LGA F 377 F 377 11.187 0 0.207 1.112 19.709 0.119 0.043 LGA Q 378 Q 378 12.233 0 0.653 1.189 14.568 0.000 0.265 LGA W 379 W 379 18.985 0 0.612 1.644 23.159 0.000 0.000 LGA S 380 S 380 18.419 0 0.147 0.206 19.999 0.000 0.000 LGA E 381 E 381 21.580 0 0.160 1.084 27.932 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.507 7.382 8.746 31.244 26.324 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.53 38.710 35.289 0.456 LGA_LOCAL RMSD: 2.534 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.698 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.507 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.368703 * X + 0.911112 * Y + -0.184210 * Z + -4.970173 Y_new = -0.837945 * X + 0.411560 * Y + 0.358422 * Z + 0.009327 Z_new = 0.402376 * X + 0.022207 * Y + 0.915205 * Z + -36.847107 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.156283 -0.414111 0.024259 [DEG: -66.2501 -23.7268 1.3900 ] ZXZ: -2.666850 0.414780 1.515663 [DEG: -152.7992 23.7651 86.8411 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS113_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS113_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.53 35.289 7.51 REMARK ---------------------------------------------------------- MOLECULE T0537TS113_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 2529 N SER 351 6.139 28.176 51.462 1.00 0.00 N ATOM 2530 CA SER 351 5.221 27.167 50.950 1.00 0.00 C ATOM 2531 C SER 351 5.911 25.957 50.200 1.00 0.00 C ATOM 2532 O SER 351 5.445 25.560 49.127 1.00 0.00 O ATOM 2533 CB SER 351 4.105 27.813 50.144 1.00 0.00 C ATOM 2534 OG SER 351 4.390 28.429 48.925 1.00 0.00 O ATOM 2535 N ALA 352 6.936 25.288 50.792 1.00 0.00 N ATOM 2536 CA ALA 352 7.615 24.110 50.234 1.00 0.00 C ATOM 2537 C ALA 352 7.059 22.825 50.905 1.00 0.00 C ATOM 2538 O ALA 352 7.257 22.645 52.121 1.00 0.00 O ATOM 2539 CB ALA 352 9.132 24.260 50.406 1.00 0.00 C ATOM 2540 N GLU 353 6.420 21.959 50.124 1.00 0.00 N ATOM 2541 CA GLU 353 5.847 20.704 50.649 1.00 0.00 C ATOM 2542 C GLU 353 6.838 19.530 50.385 1.00 0.00 C ATOM 2543 O GLU 353 6.934 19.041 49.254 1.00 0.00 O ATOM 2544 CB GLU 353 4.450 20.423 50.048 1.00 0.00 C ATOM 2545 CG GLU 353 3.811 19.150 50.638 1.00 0.00 C ATOM 2546 CD GLU 353 3.309 19.530 52.023 1.00 0.00 C ATOM 2547 OE1 GLU 353 3.924 20.441 52.640 1.00 0.00 O ATOM 2548 OE2 GLU 353 2.313 18.915 52.486 1.00 0.00 O ATOM 2549 N GLU 354 7.422 19.003 51.459 1.00 0.00 N ATOM 2550 CA GLU 354 8.368 17.882 51.375 1.00 0.00 C ATOM 2551 C GLU 354 7.689 16.579 51.910 1.00 0.00 C ATOM 2552 O GLU 354 7.204 16.557 53.052 1.00 0.00 O ATOM 2553 CB GLU 354 9.608 18.203 52.232 1.00 0.00 C ATOM 2554 CG GLU 354 10.630 17.046 52.305 1.00 0.00 C ATOM 2555 CD GLU 354 10.451 16.391 53.666 1.00 0.00 C ATOM 2556 OE1 GLU 354 9.607 15.463 53.772 1.00 0.00 O ATOM 2557 OE2 GLU 354 11.150 16.823 54.623 1.00 0.00 O ATOM 2558 N LEU 355 7.654 15.559 51.076 1.00 0.00 N ATOM 2559 CA LEU 355 7.051 14.239 51.358 1.00 0.00 C ATOM 2560 C LEU 355 7.888 13.097 50.723 1.00 0.00 C ATOM 2561 O LEU 355 8.192 13.151 49.536 1.00 0.00 O ATOM 2562 CB LEU 355 5.658 14.228 50.712 1.00 0.00 C ATOM 2563 CG LEU 355 4.595 15.090 51.350 1.00 0.00 C ATOM 2564 CD1 LEU 355 3.227 14.924 50.671 1.00 0.00 C ATOM 2565 CD2 LEU 355 4.522 14.892 52.871 1.00 0.00 C ATOM 2566 N GLY 356 8.030 11.989 51.451 1.00 0.00 N ATOM 2567 CA GLY 356 8.759 10.796 50.989 1.00 0.00 C ATOM 2568 C GLY 356 10.260 11.045 50.615 1.00 0.00 C ATOM 2569 O GLY 356 10.728 10.301 49.743 1.00 0.00 O ATOM 2570 N ASN 357 11.041 11.870 51.353 1.00 0.00 N ATOM 2571 CA ASN 357 12.456 12.048 51.101 1.00 0.00 C ATOM 2572 C ASN 357 13.162 11.137 52.119 1.00 0.00 C ATOM 2573 O ASN 357 13.269 11.451 53.311 1.00 0.00 O ATOM 2574 CB ASN 357 12.811 13.494 51.493 1.00 0.00 C ATOM 2575 CG ASN 357 14.300 13.754 51.091 1.00 0.00 C ATOM 2576 OD1 ASN 357 15.152 13.117 51.710 1.00 0.00 O ATOM 2577 ND2 ASN 357 14.550 14.571 50.076 1.00 0.00 N ATOM 2578 N ILE 358 13.577 9.985 51.632 1.00 0.00 N ATOM 2579 CA ILE 358 14.218 8.928 52.430 1.00 0.00 C ATOM 2580 C ILE 358 15.503 8.494 51.721 1.00 0.00 C ATOM 2581 O ILE 358 15.483 7.755 50.730 1.00 0.00 O ATOM 2582 CB ILE 358 13.300 7.718 52.714 1.00 0.00 C ATOM 2583 CG1 ILE 358 12.137 8.121 53.600 1.00 0.00 C ATOM 2584 CG2 ILE 358 14.077 6.574 53.354 1.00 0.00 C ATOM 2585 CD1 ILE 358 11.101 6.995 53.703 1.00 0.00 C ATOM 2586 N ILE 359 16.611 8.959 52.289 1.00 0.00 N ATOM 2587 CA ILE 359 17.930 8.690 51.806 1.00 0.00 C ATOM 2588 C ILE 359 18.694 7.784 52.851 1.00 0.00 C ATOM 2589 O ILE 359 18.613 8.050 54.068 1.00 0.00 O ATOM 2590 CB ILE 359 18.677 10.031 51.473 1.00 0.00 C ATOM 2591 CG1 ILE 359 20.064 9.663 50.899 1.00 0.00 C ATOM 2592 CG2 ILE 359 18.917 10.757 52.793 1.00 0.00 C ATOM 2593 CD1 ILE 359 20.742 10.926 50.423 1.00 0.00 C ATOM 2594 N VAL 360 19.676 6.982 52.386 1.00 0.00 N ATOM 2595 CA VAL 360 20.564 6.148 53.167 1.00 0.00 C ATOM 2596 C VAL 360 21.935 6.889 53.302 1.00 0.00 C ATOM 2597 O VAL 360 22.959 6.281 53.623 1.00 0.00 O ATOM 2598 CB VAL 360 20.687 4.735 52.736 1.00 0.00 C ATOM 2599 CG1 VAL 360 21.818 4.005 53.527 1.00 0.00 C ATOM 2600 CG2 VAL 360 19.442 3.918 52.747 1.00 0.00 C ATOM 2601 N ALA 361 21.995 8.199 53.192 1.00 0.00 N ATOM 2602 CA ALA 361 23.142 9.007 53.321 1.00 0.00 C ATOM 2603 C ALA 361 22.771 10.437 53.882 1.00 0.00 C ATOM 2604 O ALA 361 21.696 10.570 54.486 1.00 0.00 O ATOM 2605 CB ALA 361 23.912 9.005 52.055 1.00 0.00 C ATOM 2606 N TRP 362 23.738 11.402 53.969 1.00 0.00 N ATOM 2607 CA TRP 362 23.426 12.693 54.586 1.00 0.00 C ATOM 2608 C TRP 362 23.060 12.547 56.100 1.00 0.00 C ATOM 2609 O TRP 362 21.866 12.589 56.460 1.00 0.00 O ATOM 2610 CB TRP 362 22.242 13.419 53.858 1.00 0.00 C ATOM 2611 CG TRP 362 21.731 14.633 54.631 1.00 0.00 C ATOM 2612 CD1 TRP 362 22.394 15.730 55.099 1.00 0.00 C ATOM 2613 CD2 TRP 362 20.341 14.834 54.947 1.00 0.00 C ATOM 2614 NE1 TRP 362 21.510 16.594 55.700 1.00 0.00 N ATOM 2615 CE2 TRP 362 20.245 16.058 55.609 1.00 0.00 C ATOM 2616 CE3 TRP 362 19.244 14.064 54.700 1.00 0.00 C ATOM 2617 CZ2 TRP 362 19.035 16.529 56.039 1.00 0.00 C ATOM 2618 CZ3 TRP 362 18.027 14.542 55.137 1.00 0.00 C ATOM 2619 CH2 TRP 362 17.925 15.750 55.794 1.00 0.00 H ATOM 2620 N ASN 363 24.013 12.073 56.962 1.00 0.00 N ATOM 2621 CA ASN 363 23.701 11.856 58.396 1.00 0.00 C ATOM 2622 C ASN 363 22.992 13.126 58.865 1.00 0.00 C ATOM 2623 O ASN 363 23.443 14.224 58.438 1.00 0.00 O ATOM 2624 CB ASN 363 25.020 11.555 59.095 1.00 0.00 C ATOM 2625 CG ASN 363 26.159 12.547 59.165 1.00 0.00 C ATOM 2626 OD1 ASN 363 27.016 12.664 58.198 1.00 0.00 O ATOM 2627 ND2 ASN 363 26.087 13.336 60.193 1.00 0.00 N ATOM 2628 N PRO 364 21.865 13.026 59.614 1.00 0.00 N ATOM 2629 CA PRO 364 21.177 14.205 59.941 1.00 0.00 C ATOM 2630 C PRO 364 21.998 15.307 60.604 1.00 0.00 C ATOM 2631 O PRO 364 21.438 16.378 60.720 1.00 0.00 O ATOM 2632 CB PRO 364 19.795 13.948 60.576 1.00 0.00 C ATOM 2633 CG PRO 364 19.644 12.385 60.455 1.00 0.00 C ATOM 2634 CD PRO 364 20.971 11.839 59.909 1.00 0.00 C ATOM 2635 N ASN 365 23.279 15.205 60.969 1.00 0.00 N ATOM 2636 CA ASN 365 23.960 16.402 61.430 1.00 0.00 C ATOM 2637 C ASN 365 24.218 17.347 60.205 1.00 0.00 C ATOM 2638 O ASN 365 25.014 17.072 59.305 1.00 0.00 O ATOM 2639 CB ASN 365 25.366 16.057 62.031 1.00 0.00 C ATOM 2640 CG ASN 365 25.211 15.201 63.250 1.00 0.00 C ATOM 2641 OD1 ASN 365 24.494 15.529 64.194 1.00 0.00 O ATOM 2642 ND2 ASN 365 25.914 14.036 63.245 1.00 0.00 N ATOM 2643 N LEU 366 23.377 18.473 60.179 1.00 0.00 N ATOM 2644 CA LEU 366 23.457 19.554 59.186 1.00 0.00 C ATOM 2645 C LEU 366 23.332 20.821 60.017 1.00 0.00 C ATOM 2646 O LEU 366 22.298 21.161 60.618 1.00 0.00 O ATOM 2647 CB LEU 366 22.362 19.475 58.131 1.00 0.00 C ATOM 2648 CG LEU 366 22.535 20.543 57.025 1.00 0.00 C ATOM 2649 CD1 LEU 366 22.114 21.934 57.503 1.00 0.00 C ATOM 2650 CD2 LEU 366 23.979 20.540 56.498 1.00 0.00 C ATOM 2651 N TRP 367 24.332 21.664 59.633 1.00 0.00 N ATOM 2652 CA TRP 367 24.603 22.964 60.286 1.00 0.00 C ATOM 2653 C TRP 367 23.376 23.862 60.340 1.00 0.00 C ATOM 2654 O TRP 367 22.928 24.105 61.458 1.00 0.00 O ATOM 2655 CB TRP 367 25.934 23.570 59.924 1.00 0.00 C ATOM 2656 CG TRP 367 26.042 25.019 60.394 1.00 0.00 C ATOM 2657 CD1 TRP 367 26.154 26.189 59.698 1.00 0.00 C ATOM 2658 CD2 TRP 367 26.013 25.382 61.787 1.00 0.00 C ATOM 2659 NE1 TRP 367 26.222 27.250 60.565 1.00 0.00 N ATOM 2660 CE2 TRP 367 26.128 26.770 61.854 1.00 0.00 C ATOM 2661 CE3 TRP 367 25.889 24.617 62.910 1.00 0.00 C ATOM 2662 CZ2 TRP 367 26.120 27.418 63.056 1.00 0.00 C ATOM 2663 CZ3 TRP 367 25.892 25.273 64.122 1.00 0.00 C ATOM 2664 CH2 TRP 367 26.005 26.648 64.192 1.00 0.00 H ATOM 2665 N LYS 368 22.819 24.290 59.196 1.00 0.00 N ATOM 2666 CA LYS 368 21.613 25.056 59.156 1.00 0.00 C ATOM 2667 C LYS 368 20.891 24.967 57.765 1.00 0.00 C ATOM 2668 O LYS 368 21.551 25.204 56.741 1.00 0.00 O ATOM 2669 CB LYS 368 21.800 26.521 59.438 1.00 0.00 C ATOM 2670 CG LYS 368 22.818 27.209 58.506 1.00 0.00 C ATOM 2671 CD LYS 368 22.823 28.736 58.587 1.00 0.00 C ATOM 2672 CE LYS 368 24.006 29.379 57.859 1.00 0.00 C ATOM 2673 NZ LYS 368 25.260 29.078 58.581 1.00 0.00 N ATOM 2674 N LYS 369 19.577 25.077 57.736 1.00 0.00 N ATOM 2675 CA LYS 369 18.764 25.000 56.566 1.00 0.00 C ATOM 2676 C LYS 369 17.380 25.695 56.842 1.00 0.00 C ATOM 2677 O LYS 369 16.609 25.177 57.664 1.00 0.00 O ATOM 2678 CB LYS 369 18.459 23.634 56.120 1.00 0.00 C ATOM 2679 CG LYS 369 19.089 22.567 56.904 1.00 0.00 C ATOM 2680 CD LYS 369 19.837 21.702 55.938 1.00 0.00 C ATOM 2681 CE LYS 369 19.146 20.316 55.937 1.00 0.00 C ATOM 2682 NZ LYS 369 19.646 19.545 54.704 1.00 0.00 N ATOM 2683 N GLY 370 17.002 26.548 55.901 1.00 0.00 N ATOM 2684 CA GLY 370 15.790 27.230 56.102 1.00 0.00 C ATOM 2685 C GLY 370 14.785 27.103 54.941 1.00 0.00 C ATOM 2686 O GLY 370 14.641 28.087 54.248 1.00 0.00 O ATOM 2687 N THR 371 13.751 26.361 55.263 1.00 0.00 N ATOM 2688 CA THR 371 12.577 26.147 54.460 1.00 0.00 C ATOM 2689 C THR 371 11.490 25.597 55.460 1.00 0.00 C ATOM 2690 O THR 371 11.768 24.573 56.115 1.00 0.00 O ATOM 2691 CB THR 371 12.823 25.277 53.187 1.00 0.00 C ATOM 2692 OG1 THR 371 13.177 23.893 53.517 1.00 0.00 O ATOM 2693 CG2 THR 371 13.983 25.935 52.382 1.00 0.00 C ATOM 2694 N ASN 372 10.231 26.112 55.425 1.00 0.00 N ATOM 2695 CA ASN 372 9.254 25.649 56.456 1.00 0.00 C ATOM 2696 C ASN 372 9.118 24.114 56.279 1.00 0.00 C ATOM 2697 O ASN 372 9.142 23.441 57.317 1.00 0.00 O ATOM 2698 CB ASN 372 7.917 26.435 56.410 1.00 0.00 C ATOM 2699 CG ASN 372 6.897 26.110 57.439 1.00 0.00 C ATOM 2700 OD1 ASN 372 7.098 26.298 58.660 1.00 0.00 O ATOM 2701 ND2 ASN 372 5.762 25.601 56.940 1.00 0.00 N ATOM 2702 N GLY 373 8.599 23.624 55.118 1.00 0.00 N ATOM 2703 CA GLY 373 8.557 22.215 54.953 1.00 0.00 C ATOM 2704 C GLY 373 10.029 21.905 54.678 1.00 0.00 C ATOM 2705 O GLY 373 10.400 22.027 53.475 1.00 0.00 O ATOM 2706 N TYR 374 10.733 21.073 55.478 1.00 0.00 N ATOM 2707 CA TYR 374 12.090 20.682 55.016 1.00 0.00 C ATOM 2708 C TYR 374 12.566 19.318 55.449 1.00 0.00 C ATOM 2709 O TYR 374 12.033 18.816 56.479 1.00 0.00 O ATOM 2710 CB TYR 374 13.123 21.741 55.247 1.00 0.00 C ATOM 2711 CG TYR 374 14.466 21.503 54.613 1.00 0.00 C ATOM 2712 CD1 TYR 374 14.696 21.763 53.261 1.00 0.00 C ATOM 2713 CD2 TYR 374 15.506 20.955 55.370 1.00 0.00 C ATOM 2714 CE1 TYR 374 15.936 21.490 52.675 1.00 0.00 C ATOM 2715 CE2 TYR 374 16.742 20.671 54.810 1.00 0.00 C ATOM 2716 CZ TYR 374 16.948 20.946 53.459 1.00 0.00 C ATOM 2717 OH TYR 374 18.164 20.668 52.900 1.00 0.00 H ATOM 2718 N PRO 375 13.505 18.592 54.732 1.00 0.00 N ATOM 2719 CA PRO 375 13.884 17.388 55.314 1.00 0.00 C ATOM 2720 C PRO 375 14.448 17.609 56.749 1.00 0.00 C ATOM 2721 O PRO 375 14.644 16.576 57.409 1.00 0.00 O ATOM 2722 CB PRO 375 14.895 16.685 54.432 1.00 0.00 C ATOM 2723 CG PRO 375 15.378 17.816 53.482 1.00 0.00 C ATOM 2724 CD PRO 375 14.210 18.706 53.360 1.00 0.00 C ATOM 2725 N ILE 376 14.929 18.766 57.193 1.00 0.00 N ATOM 2726 CA ILE 376 15.331 18.839 58.631 1.00 0.00 C ATOM 2727 C ILE 376 14.091 18.270 59.343 1.00 0.00 C ATOM 2728 O ILE 376 13.049 18.947 59.356 1.00 0.00 O ATOM 2729 CB ILE 376 15.743 20.214 59.074 1.00 0.00 C ATOM 2730 CG1 ILE 376 16.998 20.681 58.415 1.00 0.00 C ATOM 2731 CG2 ILE 376 15.968 20.260 60.589 1.00 0.00 C ATOM 2732 CD1 ILE 376 18.252 19.846 58.625 1.00 0.00 C ATOM 2733 N PHE 377 14.327 17.241 60.216 1.00 0.00 N ATOM 2734 CA PHE 377 13.201 16.629 60.878 1.00 0.00 C ATOM 2735 C PHE 377 12.762 17.582 62.034 1.00 0.00 C ATOM 2736 O PHE 377 13.414 17.708 63.068 1.00 0.00 O ATOM 2737 CB PHE 377 13.561 15.227 61.397 1.00 0.00 C ATOM 2738 CG PHE 377 12.272 14.475 61.750 1.00 0.00 C ATOM 2739 CD1 PHE 377 11.485 13.873 60.763 1.00 0.00 C ATOM 2740 CD2 PHE 377 11.871 14.373 63.087 1.00 0.00 C ATOM 2741 CE1 PHE 377 10.341 13.144 61.104 1.00 0.00 C ATOM 2742 CE2 PHE 377 10.720 13.667 63.446 1.00 0.00 C ATOM 2743 CZ PHE 377 9.965 13.044 62.445 1.00 0.00 C ATOM 2744 N GLN 378 11.613 18.211 61.760 1.00 0.00 N ATOM 2745 CA GLN 378 10.871 19.117 62.660 1.00 0.00 C ATOM 2746 C GLN 378 9.391 19.124 62.123 1.00 0.00 C ATOM 2747 O GLN 378 9.165 19.396 60.944 1.00 0.00 O ATOM 2748 CB GLN 378 11.462 20.518 62.662 1.00 0.00 C ATOM 2749 CG GLN 378 12.752 20.674 63.426 1.00 0.00 C ATOM 2750 CD GLN 378 12.953 22.135 63.812 1.00 0.00 C ATOM 2751 OE1 GLN 378 13.932 22.490 64.465 1.00 0.00 O ATOM 2752 NE2 GLN 378 11.987 23.006 63.416 1.00 0.00 N ATOM 2753 N TRP 379 8.464 19.259 63.060 1.00 0.00 N ATOM 2754 CA TRP 379 7.042 19.290 62.793 1.00 0.00 C ATOM 2755 C TRP 379 6.589 20.661 62.250 1.00 0.00 C ATOM 2756 O TRP 379 6.968 21.720 62.782 1.00 0.00 O ATOM 2757 CB TRP 379 6.350 18.909 64.104 1.00 0.00 C ATOM 2758 CG TRP 379 6.782 19.745 65.262 1.00 0.00 C ATOM 2759 CD1 TRP 379 6.359 20.939 65.773 1.00 0.00 C ATOM 2760 CD2 TRP 379 7.895 19.330 66.064 1.00 0.00 C ATOM 2761 NE1 TRP 379 7.146 21.292 66.844 1.00 0.00 N ATOM 2762 CE2 TRP 379 8.094 20.308 67.036 1.00 0.00 C ATOM 2763 CE3 TRP 379 8.690 18.219 65.993 1.00 0.00 C ATOM 2764 CZ2 TRP 379 9.101 20.192 67.953 1.00 0.00 C ATOM 2765 CZ3 TRP 379 9.697 18.100 66.924 1.00 0.00 C ATOM 2766 CH2 TRP 379 9.899 19.069 67.885 1.00 0.00 H ATOM 2767 N SER 380 5.786 20.621 61.183 1.00 0.00 N ATOM 2768 CA SER 380 5.207 21.806 60.540 1.00 0.00 C ATOM 2769 C SER 380 3.691 21.862 60.821 1.00 0.00 C ATOM 2770 O SER 380 2.940 21.047 60.285 1.00 0.00 O ATOM 2771 CB SER 380 5.467 21.744 59.033 1.00 0.00 C ATOM 2772 OG SER 380 6.793 21.764 58.603 1.00 0.00 O ATOM 2773 N GLU 381 3.292 23.053 61.265 1.00 0.00 N ATOM 2774 CA GLU 381 1.924 23.459 61.555 1.00 0.00 C ATOM 2775 C GLU 381 1.961 24.948 61.973 1.00 0.00 C ATOM 2776 O GLU 381 2.352 25.324 63.097 1.00 0.00 O ATOM 2777 CB GLU 381 1.287 22.621 62.659 1.00 0.00 C ATOM 2778 CG GLU 381 0.821 21.240 62.252 1.00 0.00 C ATOM 2779 CD GLU 381 -0.512 21.393 61.536 1.00 0.00 C ATOM 2780 OE1 GLU 381 -0.899 22.558 61.249 1.00 0.00 O ATOM 2781 OE2 GLU 381 -1.167 20.349 61.271 1.00 0.00 O ATOM 2782 OXT GLU 381 1.515 25.767 61.118 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 100.54 18.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 113.79 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 102.05 20.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 92.58 10.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.17 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 77.67 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 80.52 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 77.20 52.2 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 67.70 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.08 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 87.46 37.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 66.09 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 86.88 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 47.66 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.54 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 52.10 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 62.15 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 75.54 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.26 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 78.26 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 78.26 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.51 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.51 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2422 CRMSCA SECONDARY STRUCTURE . . 6.32 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.46 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.72 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.59 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.39 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.55 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.82 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.06 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.33 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.53 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.14 120 100.0 120 CRMSSC BURIED . . . . . . . . 9.04 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.86 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.40 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.94 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.18 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.702 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.887 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.563 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.426 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.800 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.934 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.679 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 7.483 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.092 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 9.397 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 7.959 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.166 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 8.198 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.897 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 6.819 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 7.924 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 7.695 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 11 25 31 31 DISTCA CA (P) 0.00 6.45 16.13 35.48 80.65 31 DISTCA CA (RMS) 0.00 1.61 2.29 3.41 5.93 DISTCA ALL (N) 0 9 27 73 170 254 254 DISTALL ALL (P) 0.00 3.54 10.63 28.74 66.93 254 DISTALL ALL (RMS) 0.00 1.66 2.27 3.49 6.04 DISTALL END of the results output