####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS110_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS110_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 351 - 368 4.72 15.85 LCS_AVERAGE: 54.01 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 362 - 373 1.69 15.67 LCS_AVERAGE: 27.26 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 362 - 367 0.62 16.82 LONGEST_CONTINUOUS_SEGMENT: 6 366 - 371 0.65 16.84 LONGEST_CONTINUOUS_SEGMENT: 6 367 - 372 0.99 15.90 LCS_AVERAGE: 15.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 5 5 18 3 4 5 5 6 6 8 9 10 12 15 16 18 18 18 18 19 20 20 22 LCS_GDT A 352 A 352 5 5 18 4 4 5 5 5 5 7 9 11 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT E 353 E 353 5 5 18 4 4 5 5 5 5 7 10 12 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT E 354 E 354 5 5 18 4 4 5 5 5 7 9 12 12 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT L 355 L 355 5 5 18 4 4 5 5 5 5 9 12 12 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT G 356 G 356 3 4 18 3 3 4 5 5 7 9 12 12 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT N 357 N 357 3 6 18 3 3 4 4 5 7 7 12 12 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT I 358 I 358 4 6 18 3 4 4 5 6 8 9 12 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT I 359 I 359 4 7 18 3 4 4 5 6 8 9 12 12 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT V 360 V 360 4 7 18 3 5 5 5 6 8 9 12 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT A 361 A 361 4 7 18 3 5 5 5 6 11 11 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT W 362 W 362 6 12 18 4 5 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT N 363 N 363 6 12 18 3 5 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT P 364 P 364 6 12 18 4 5 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT N 365 N 365 6 12 18 4 5 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT L 366 L 366 6 12 18 4 6 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT W 367 W 367 6 12 18 4 6 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT K 368 K 368 6 12 18 3 6 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 LCS_GDT K 369 K 369 6 12 17 3 6 7 9 11 12 12 13 13 14 15 16 16 16 18 18 19 19 20 22 LCS_GDT G 370 G 370 6 12 17 3 6 7 10 11 12 12 13 13 14 15 16 16 16 17 17 18 19 20 22 LCS_GDT T 371 T 371 6 12 17 3 6 7 10 11 12 12 13 13 14 15 16 16 16 17 17 18 19 20 22 LCS_GDT N 372 N 372 6 12 17 3 3 7 10 11 12 12 13 13 14 15 16 16 16 17 17 18 19 20 22 LCS_GDT G 373 G 373 3 12 17 3 3 7 10 11 12 12 13 13 14 15 16 16 16 17 17 18 19 20 21 LCS_GDT Y 374 Y 374 4 8 17 3 4 5 6 7 8 8 8 11 13 13 14 14 15 17 17 18 18 20 21 LCS_GDT P 375 P 375 5 8 17 3 5 5 6 7 8 8 8 9 9 10 10 11 12 14 16 17 18 19 21 LCS_GDT I 376 I 376 5 8 16 3 5 5 6 7 8 8 8 9 9 10 11 12 13 15 17 19 20 20 22 LCS_GDT F 377 F 377 5 8 12 3 5 5 6 7 8 8 8 9 9 10 10 11 12 13 16 18 18 20 22 LCS_GDT Q 378 Q 378 5 8 12 3 5 5 6 7 8 8 8 9 9 10 10 11 12 13 14 18 18 20 22 LCS_GDT W 379 W 379 5 8 12 3 5 5 6 7 8 8 8 9 9 10 11 12 13 15 16 18 18 20 21 LCS_GDT S 380 S 380 3 4 12 3 3 3 4 4 4 5 7 8 9 10 10 11 12 13 14 18 18 20 21 LCS_GDT E 381 E 381 3 4 12 0 3 3 4 5 5 8 8 8 9 10 11 12 13 15 16 18 20 20 22 LCS_AVERAGE LCS_A: 32.33 ( 15.71 27.26 54.01 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 10 11 12 12 13 13 14 15 16 18 18 18 18 19 20 20 22 GDT PERCENT_AT 12.90 19.35 22.58 32.26 35.48 38.71 38.71 41.94 41.94 45.16 48.39 51.61 58.06 58.06 58.06 58.06 61.29 64.52 64.52 70.97 GDT RMS_LOCAL 0.14 0.65 0.92 1.42 1.54 1.69 1.69 2.18 2.18 3.05 3.27 3.58 4.72 4.72 4.72 4.72 5.08 6.06 5.64 6.55 GDT RMS_ALL_AT 28.25 16.84 16.02 15.79 15.74 15.67 15.67 15.58 15.58 15.02 15.09 14.96 15.85 15.85 15.85 15.85 13.93 11.22 12.93 12.99 # Checking swapping # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 17.612 0 0.090 0.209 18.221 0.000 0.000 LGA A 352 A 352 21.269 0 0.053 0.120 22.436 0.000 0.000 LGA E 353 E 353 23.539 0 0.053 1.301 28.210 0.000 0.000 LGA E 354 E 354 21.826 0 0.172 1.104 24.078 0.000 0.000 LGA L 355 L 355 20.261 0 0.427 0.410 24.471 0.000 0.000 LGA G 356 G 356 18.937 0 0.625 0.625 19.577 0.000 0.000 LGA N 357 N 357 16.021 0 0.552 0.984 19.130 0.000 0.000 LGA I 358 I 358 9.442 0 0.293 1.288 12.097 7.500 5.000 LGA I 359 I 359 8.622 0 0.158 0.380 15.538 10.952 5.476 LGA V 360 V 360 6.877 0 0.062 1.095 10.852 18.214 10.680 LGA A 361 A 361 4.649 0 0.797 0.811 6.692 42.500 36.667 LGA W 362 W 362 2.724 0 0.217 1.073 9.812 48.690 35.918 LGA N 363 N 363 2.535 0 0.177 1.063 5.720 69.048 50.655 LGA P 364 P 364 1.248 0 0.046 0.291 3.075 81.548 71.156 LGA N 365 N 365 0.638 0 0.021 0.143 1.708 86.190 86.190 LGA L 366 L 366 1.452 0 0.065 0.091 3.230 81.548 70.357 LGA W 367 W 367 0.880 0 0.141 1.147 9.714 82.738 35.782 LGA K 368 K 368 1.936 0 0.034 0.777 10.431 83.810 47.354 LGA K 369 K 369 2.463 0 0.643 0.983 3.609 59.524 60.106 LGA G 370 G 370 1.837 0 0.357 0.357 2.785 73.333 73.333 LGA T 371 T 371 1.630 0 0.138 1.172 4.305 75.119 65.782 LGA N 372 N 372 1.820 0 0.250 0.424 5.172 79.405 60.060 LGA G 373 G 373 1.579 0 0.674 0.674 5.001 56.667 56.667 LGA Y 374 Y 374 8.183 0 0.079 1.222 12.784 6.667 2.341 LGA P 375 P 375 12.740 0 0.096 0.398 14.397 0.000 0.000 LGA I 376 I 376 15.593 0 0.195 0.912 18.225 0.000 0.000 LGA F 377 F 377 22.148 0 0.087 0.533 26.060 0.000 0.000 LGA Q 378 Q 378 25.527 0 0.346 0.493 28.901 0.000 0.000 LGA W 379 W 379 28.791 0 0.342 1.297 32.274 0.000 0.000 LGA S 380 S 380 30.868 0 0.632 0.898 33.314 0.000 0.000 LGA E 381 E 381 32.245 1 0.591 0.694 34.420 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 10.624 10.611 11.816 31.079 24.952 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.18 37.903 36.400 0.569 LGA_LOCAL RMSD: 2.183 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.583 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 10.624 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.759081 * X + -0.565013 * Y + -0.323353 * Z + 16.896753 Y_new = 0.626806 * X + 0.500193 * Y + 0.597429 * Z + 2.279685 Z_new = -0.175816 * X + -0.656176 * Y + 0.733840 * Z + 37.525986 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.690242 0.176735 -0.729584 [DEG: 39.5480 10.1262 -41.8021 ] ZXZ: -2.645499 0.746839 -2.879802 [DEG: -151.5759 42.7907 -165.0005 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS110_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS110_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.18 36.400 10.62 REMARK ---------------------------------------------------------- MOLECULE T0537TS110_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 19.355 5.999 45.433 1.00 0.00 N ATOM 2530 CA SER 351 20.385 6.505 46.413 1.00 0.00 C ATOM 2531 CB SER 351 20.420 7.418 47.642 1.00 0.00 C ATOM 2532 C SER 351 20.981 5.083 46.805 1.00 0.00 C ATOM 2533 O SER 351 20.392 3.998 46.713 1.00 0.00 O ATOM 2534 OG SER 351 19.685 6.833 48.705 1.00 0.00 O ATOM 2535 N ALA 352 22.274 5.197 47.089 1.00 0.00 N ATOM 2536 CA ALA 352 22.955 3.886 47.400 1.00 0.00 C ATOM 2537 CB ALA 352 22.401 3.217 48.661 1.00 0.00 C ATOM 2538 C ALA 352 23.404 3.194 46.097 1.00 0.00 C ATOM 2539 O ALA 352 24.577 2.806 46.042 1.00 0.00 O ATOM 2540 N GLU 353 22.575 3.110 45.060 1.00 0.00 N ATOM 2541 CA GLU 353 22.871 2.729 43.782 1.00 0.00 C ATOM 2542 CB GLU 353 21.742 2.728 42.719 1.00 0.00 C ATOM 2543 C GLU 353 24.288 3.273 43.346 1.00 0.00 C ATOM 2544 O GLU 353 25.162 2.525 42.916 1.00 0.00 O ATOM 2545 CG GLU 353 20.680 1.653 42.959 1.00 0.00 C ATOM 2546 CD GLU 353 21.364 0.294 42.897 1.00 0.00 C ATOM 2547 OE1 GLU 353 22.122 0.057 41.918 1.00 0.00 O ATOM 2548 OE2 GLU 353 21.137 -0.524 43.827 1.00 0.00 O ATOM 2549 N GLU 354 24.458 4.583 43.474 1.00 0.00 N ATOM 2550 CA GLU 354 25.658 5.221 43.101 1.00 0.00 C ATOM 2551 CB GLU 354 25.598 6.755 43.358 1.00 0.00 C ATOM 2552 C GLU 354 26.941 5.051 43.956 1.00 0.00 C ATOM 2553 O GLU 354 28.072 5.373 43.575 1.00 0.00 O ATOM 2554 CG GLU 354 24.572 7.480 42.486 1.00 0.00 C ATOM 2555 CD GLU 354 25.087 7.479 41.054 1.00 0.00 C ATOM 2556 OE1 GLU 354 26.268 7.090 40.850 1.00 0.00 O ATOM 2557 OE2 GLU 354 24.306 7.866 40.144 1.00 0.00 O ATOM 2558 N LEU 355 26.711 4.589 45.190 1.00 0.00 N ATOM 2559 CA LEU 355 27.691 4.431 46.212 1.00 0.00 C ATOM 2560 CB LEU 355 28.968 3.745 45.703 1.00 0.00 C ATOM 2561 C LEU 355 28.075 5.683 46.898 1.00 0.00 C ATOM 2562 O LEU 355 29.258 5.968 47.059 1.00 0.00 O ATOM 2563 CG LEU 355 28.737 2.315 45.211 1.00 0.00 C ATOM 2564 CD1 LEU 355 29.971 1.627 44.626 1.00 0.00 C ATOM 2565 CD2 LEU 355 28.258 1.333 46.280 1.00 0.00 C ATOM 2566 N GLY 356 27.080 6.474 47.266 1.00 0.00 N ATOM 2567 CA GLY 356 27.196 7.859 47.775 1.00 0.00 C ATOM 2568 C GLY 356 26.645 7.853 49.212 1.00 0.00 C ATOM 2569 O GLY 356 25.679 7.140 49.504 1.00 0.00 O ATOM 2570 N ASN 357 27.267 8.624 50.101 1.00 0.00 N ATOM 2571 CA ASN 357 26.801 8.648 51.471 1.00 0.00 C ATOM 2572 CB ASN 357 27.867 9.323 52.320 1.00 0.00 C ATOM 2573 C ASN 357 25.685 9.413 51.942 1.00 0.00 C ATOM 2574 O ASN 357 25.736 10.638 51.861 1.00 0.00 O ATOM 2575 CG ASN 357 27.395 9.309 53.766 1.00 0.00 C ATOM 2576 OD1 ASN 357 26.518 8.531 54.140 1.00 0.00 O ATOM 2577 ND2 ASN 357 27.950 10.170 54.661 1.00 0.00 N ATOM 2578 N ILE 358 24.617 8.760 52.396 1.00 0.00 N ATOM 2579 CA ILE 358 23.344 9.413 52.854 1.00 0.00 C ATOM 2580 CB ILE 358 22.161 8.407 52.968 1.00 0.00 C ATOM 2581 C ILE 358 23.255 10.355 53.976 1.00 0.00 C ATOM 2582 O ILE 358 22.164 10.775 54.322 1.00 0.00 O ATOM 2583 CG1 ILE 358 22.399 7.294 54.002 1.00 0.00 C ATOM 2584 CG2 ILE 358 21.852 7.674 51.651 1.00 0.00 C ATOM 2585 CD1 ILE 358 21.170 6.421 54.252 1.00 0.00 C ATOM 2586 N ILE 359 24.391 10.855 54.462 1.00 0.00 N ATOM 2587 CA ILE 359 24.492 11.924 55.464 1.00 0.00 C ATOM 2588 CB ILE 359 25.655 11.811 56.451 1.00 0.00 C ATOM 2589 C ILE 359 23.999 13.324 55.349 1.00 0.00 C ATOM 2590 O ILE 359 23.572 13.796 56.393 1.00 0.00 O ATOM 2591 CG1 ILE 359 25.523 10.625 57.421 1.00 0.00 C ATOM 2592 CG2 ILE 359 25.819 13.049 57.351 1.00 0.00 C ATOM 2593 CD1 ILE 359 26.795 10.348 58.222 1.00 0.00 C ATOM 2594 N VAL 360 24.037 13.999 54.212 1.00 0.00 N ATOM 2595 CA VAL 360 23.389 15.164 53.812 1.00 0.00 C ATOM 2596 CB VAL 360 23.377 15.508 52.335 1.00 0.00 C ATOM 2597 C VAL 360 22.031 15.456 54.419 1.00 0.00 C ATOM 2598 O VAL 360 21.761 16.630 54.672 1.00 0.00 O ATOM 2599 CG1 VAL 360 24.772 15.738 51.750 1.00 0.00 C ATOM 2600 CG2 VAL 360 22.750 14.420 51.460 1.00 0.00 C ATOM 2601 N ALA 361 21.223 14.448 54.756 1.00 0.00 N ATOM 2602 CA ALA 361 19.944 14.604 55.314 1.00 0.00 C ATOM 2603 CB ALA 361 18.940 15.471 54.533 1.00 0.00 C ATOM 2604 C ALA 361 20.059 13.095 55.730 1.00 0.00 C ATOM 2605 O ALA 361 21.093 12.445 55.551 1.00 0.00 O ATOM 2606 N TRP 362 19.008 12.591 56.359 1.00 0.00 N ATOM 2607 CA TRP 362 19.153 11.210 56.829 1.00 0.00 C ATOM 2608 CB TRP 362 19.269 10.184 55.683 1.00 0.00 C ATOM 2609 C TRP 362 19.867 11.384 58.250 1.00 0.00 C ATOM 2610 O TRP 362 19.315 11.275 59.352 1.00 0.00 O ATOM 2611 CG TRP 362 18.007 10.029 54.868 1.00 0.00 C ATOM 2612 CD1 TRP 362 17.689 10.563 53.654 1.00 0.00 C ATOM 2613 CD2 TRP 362 16.844 9.263 55.215 1.00 0.00 C ATOM 2614 NE1 TRP 362 16.492 10.225 53.215 1.00 0.00 N ATOM 2615 CE2 TRP 362 15.914 9.408 54.153 1.00 0.00 C ATOM 2616 CE3 TRP 362 16.494 8.461 56.322 1.00 0.00 C ATOM 2617 CZ2 TRP 362 14.641 8.779 54.163 1.00 0.00 C ATOM 2618 CZ3 TRP 362 15.216 7.826 56.341 1.00 0.00 C ATOM 2619 CH2 TRP 362 14.312 7.995 55.261 1.00 0.00 C ATOM 2620 N ASN 363 21.149 11.699 58.110 1.00 0.00 N ATOM 2621 CA ASN 363 21.916 11.871 59.353 1.00 0.00 C ATOM 2622 CB ASN 363 23.217 11.368 58.716 1.00 0.00 C ATOM 2623 C ASN 363 21.819 13.313 59.745 1.00 0.00 C ATOM 2624 O ASN 363 22.165 14.130 58.887 1.00 0.00 O ATOM 2625 CG ASN 363 23.055 9.884 58.423 1.00 0.00 C ATOM 2626 OD1 ASN 363 22.239 9.202 59.042 1.00 0.00 O ATOM 2627 ND2 ASN 363 23.823 9.302 57.464 1.00 0.00 N ATOM 2628 N PRO 364 21.438 13.657 60.976 1.00 0.00 N ATOM 2629 CA PRO 364 21.319 15.067 61.319 1.00 0.00 C ATOM 2630 CB PRO 364 20.730 14.921 62.716 1.00 0.00 C ATOM 2631 C PRO 364 22.501 16.010 61.195 1.00 0.00 C ATOM 2632 O PRO 364 22.354 17.226 61.075 1.00 0.00 O ATOM 2633 CG PRO 364 21.047 13.577 63.374 1.00 0.00 C ATOM 2634 CD PRO 364 21.096 12.408 62.386 1.00 0.00 C ATOM 2635 N ASN 365 23.695 15.435 61.180 1.00 0.00 N ATOM 2636 CA ASN 365 24.912 16.270 61.025 1.00 0.00 C ATOM 2637 CB ASN 365 26.197 15.458 61.225 1.00 0.00 C ATOM 2638 C ASN 365 24.969 16.962 59.620 1.00 0.00 C ATOM 2639 O ASN 365 25.762 17.890 59.449 1.00 0.00 O ATOM 2640 CG ASN 365 26.323 15.133 62.707 1.00 0.00 C ATOM 2641 OD1 ASN 365 25.721 15.792 63.553 1.00 0.00 O ATOM 2642 ND2 ASN 365 27.112 14.099 63.101 1.00 0.00 N ATOM 2643 N LEU 366 24.192 16.518 58.635 1.00 0.00 N ATOM 2644 CA LEU 366 24.166 17.085 57.389 1.00 0.00 C ATOM 2645 CB LEU 366 23.701 16.077 56.333 1.00 0.00 C ATOM 2646 C LEU 366 23.281 18.302 57.313 1.00 0.00 C ATOM 2647 O LEU 366 23.728 19.413 57.021 1.00 0.00 O ATOM 2648 CG LEU 366 23.659 16.654 54.917 1.00 0.00 C ATOM 2649 CD1 LEU 366 25.006 17.121 54.368 1.00 0.00 C ATOM 2650 CD2 LEU 366 23.154 15.690 53.842 1.00 0.00 C ATOM 2651 N TRP 367 21.997 18.064 57.589 1.00 0.00 N ATOM 2652 CA TRP 367 20.956 19.107 57.603 1.00 0.00 C ATOM 2653 CB TRP 367 20.999 20.041 56.385 1.00 0.00 C ATOM 2654 C TRP 367 19.543 18.511 57.721 1.00 0.00 C ATOM 2655 O TRP 367 19.303 17.810 56.741 1.00 0.00 O ATOM 2656 CG TRP 367 19.978 21.152 56.426 1.00 0.00 C ATOM 2657 CD1 TRP 367 18.808 21.279 55.733 1.00 0.00 C ATOM 2658 CD2 TRP 367 20.028 22.342 57.226 1.00 0.00 C ATOM 2659 NE1 TRP 367 18.141 22.384 56.006 1.00 0.00 N ATOM 2660 CE2 TRP 367 18.857 23.091 56.937 1.00 0.00 C ATOM 2661 CE3 TRP 367 20.948 22.852 58.166 1.00 0.00 C ATOM 2662 CZ2 TRP 367 18.578 24.339 57.557 1.00 0.00 C ATOM 2663 CZ3 TRP 367 20.674 24.104 58.793 1.00 0.00 C ATOM 2664 CH2 TRP 367 19.495 24.827 58.479 1.00 0.00 C ATOM 2665 N LYS 368 18.596 18.950 58.543 1.00 0.00 N ATOM 2666 CA LYS 368 17.244 18.429 58.052 1.00 0.00 C ATOM 2667 CB LYS 368 16.815 18.062 59.478 1.00 0.00 C ATOM 2668 C LYS 368 16.406 19.642 57.517 1.00 0.00 C ATOM 2669 O LYS 368 16.706 20.784 57.890 1.00 0.00 O ATOM 2670 CG LYS 368 17.674 16.965 60.110 1.00 0.00 C ATOM 2671 CD LYS 368 17.426 16.780 61.609 1.00 0.00 C ATOM 2672 CE LYS 368 16.077 16.134 61.931 1.00 0.00 C ATOM 2673 NZ LYS 368 15.997 15.824 63.376 1.00 0.00 N ATOM 2674 N LYS 369 15.284 19.348 56.877 1.00 0.00 N ATOM 2675 CA LYS 369 14.490 20.465 56.407 1.00 0.00 C ATOM 2676 CB LYS 369 13.138 19.904 55.941 1.00 0.00 C ATOM 2677 C LYS 369 14.315 21.937 57.016 1.00 0.00 C ATOM 2678 O LYS 369 14.491 22.954 56.328 1.00 0.00 O ATOM 2679 CG LYS 369 12.261 19.393 57.086 1.00 0.00 C ATOM 2680 CD LYS 369 12.817 18.145 57.773 1.00 0.00 C ATOM 2681 CE LYS 369 11.841 17.503 58.761 1.00 0.00 C ATOM 2682 NZ LYS 369 12.291 16.134 59.101 1.00 0.00 N ATOM 2683 N GLY 370 13.989 21.975 58.310 1.00 0.00 N ATOM 2684 CA GLY 370 13.543 22.825 59.231 1.00 0.00 C ATOM 2685 C GLY 370 12.537 23.703 59.494 1.00 0.00 C ATOM 2686 O GLY 370 12.992 24.790 59.134 1.00 0.00 O ATOM 2687 N THR 371 11.318 23.576 59.991 1.00 0.00 N ATOM 2688 CA THR 371 10.233 24.428 60.185 1.00 0.00 C ATOM 2689 CB THR 371 10.018 25.754 60.977 1.00 0.00 C ATOM 2690 C THR 371 9.607 24.525 58.811 1.00 0.00 C ATOM 2691 O THR 371 8.390 24.399 58.667 1.00 0.00 O ATOM 2692 OG1 THR 371 10.287 25.548 62.356 1.00 0.00 O ATOM 2693 CG2 THR 371 8.562 26.219 60.807 1.00 0.00 C ATOM 2694 N ASN 372 10.422 24.758 57.789 1.00 0.00 N ATOM 2695 CA ASN 372 9.940 24.882 56.424 1.00 0.00 C ATOM 2696 CB ASN 372 11.309 25.426 55.999 1.00 0.00 C ATOM 2697 C ASN 372 9.006 24.326 55.371 1.00 0.00 C ATOM 2698 O ASN 372 8.697 24.966 54.359 1.00 0.00 O ATOM 2699 CG ASN 372 12.345 24.339 56.249 1.00 0.00 C ATOM 2700 OD1 ASN 372 12.013 23.233 56.674 1.00 0.00 O ATOM 2701 ND2 ASN 372 13.658 24.594 55.999 1.00 0.00 N ATOM 2702 N GLY 373 8.518 23.113 55.614 1.00 0.00 N ATOM 2703 CA GLY 373 7.642 22.537 54.512 1.00 0.00 C ATOM 2704 C GLY 373 6.175 22.259 54.899 1.00 0.00 C ATOM 2705 O GLY 373 5.932 21.923 56.057 1.00 0.00 O ATOM 2706 N TYR 374 5.264 22.270 53.934 1.00 0.00 N ATOM 2707 CA TYR 374 3.904 21.890 54.279 1.00 0.00 C ATOM 2708 CB TYR 374 2.983 22.701 53.359 1.00 0.00 C ATOM 2709 C TYR 374 3.595 20.519 53.811 1.00 0.00 C ATOM 2710 O TYR 374 3.953 20.212 52.678 1.00 0.00 O ATOM 2711 CG TYR 374 1.579 22.322 53.682 1.00 0.00 C ATOM 2712 CD1 TYR 374 0.969 22.830 54.837 1.00 0.00 C ATOM 2713 CD2 TYR 374 0.835 21.460 52.848 1.00 0.00 C ATOM 2714 CE1 TYR 374 -0.358 22.496 55.175 1.00 0.00 C ATOM 2715 CE2 TYR 374 -0.516 21.110 53.177 1.00 0.00 C ATOM 2716 CZ TYR 374 -1.094 21.641 54.348 1.00 0.00 C ATOM 2717 OH TYR 374 -2.387 21.330 54.708 1.00 0.00 O ATOM 2718 N PRO 375 3.001 19.677 54.643 1.00 0.00 N ATOM 2719 CA PRO 375 2.595 18.323 54.327 1.00 0.00 C ATOM 2720 CB PRO 375 1.116 18.031 54.589 1.00 0.00 C ATOM 2721 C PRO 375 3.424 17.540 53.285 1.00 0.00 C ATOM 2722 O PRO 375 3.613 18.096 52.217 1.00 0.00 O ATOM 2723 CG PRO 375 0.494 18.941 55.652 1.00 0.00 C ATOM 2724 CD PRO 375 1.024 20.375 55.617 1.00 0.00 C ATOM 2725 N ILE 376 3.877 16.325 53.561 1.00 0.00 N ATOM 2726 CA ILE 376 4.561 15.672 52.443 1.00 0.00 C ATOM 2727 CB ILE 376 5.727 14.864 53.023 1.00 0.00 C ATOM 2728 C ILE 376 3.463 14.437 52.327 1.00 0.00 C ATOM 2729 O ILE 376 2.907 13.800 53.217 1.00 0.00 O ATOM 2730 CG1 ILE 376 6.761 15.726 53.766 1.00 0.00 C ATOM 2731 CG2 ILE 376 6.531 14.098 51.959 1.00 0.00 C ATOM 2732 CD1 ILE 376 7.795 14.907 54.538 1.00 0.00 C ATOM 2733 N PHE 377 3.149 14.311 51.043 1.00 0.00 N ATOM 2734 CA PHE 377 2.409 13.421 50.266 1.00 0.00 C ATOM 2735 CB PHE 377 1.812 13.904 48.933 1.00 0.00 C ATOM 2736 C PHE 377 3.023 12.056 50.152 1.00 0.00 C ATOM 2737 O PHE 377 4.243 12.026 49.902 1.00 0.00 O ATOM 2738 CG PHE 377 0.686 14.825 49.254 1.00 0.00 C ATOM 2739 CD1 PHE 377 0.822 16.229 49.176 1.00 0.00 C ATOM 2740 CD2 PHE 377 -0.559 14.300 49.646 1.00 0.00 C ATOM 2741 CE1 PHE 377 -0.262 17.103 49.481 1.00 0.00 C ATOM 2742 CE2 PHE 377 -1.661 15.152 49.958 1.00 0.00 C ATOM 2743 CZ PHE 377 -1.510 16.561 49.875 1.00 0.00 C ATOM 2744 N GLN 378 2.275 10.961 50.275 1.00 0.00 N ATOM 2745 CA GLN 378 2.952 9.664 50.101 1.00 0.00 C ATOM 2746 CB GLN 378 1.958 8.622 50.633 1.00 0.00 C ATOM 2747 C GLN 378 3.666 8.807 49.031 1.00 0.00 C ATOM 2748 O GLN 378 3.712 7.576 49.104 1.00 0.00 O ATOM 2749 CG GLN 378 1.824 8.629 52.157 1.00 0.00 C ATOM 2750 CD GLN 378 0.667 7.713 52.532 1.00 0.00 C ATOM 2751 OE1 GLN 378 0.161 6.961 51.702 1.00 0.00 O ATOM 2752 NE2 GLN 378 0.187 7.728 53.804 1.00 0.00 N ATOM 2753 N TRP 379 4.160 9.466 47.992 1.00 0.00 N ATOM 2754 CA TRP 379 4.855 8.760 46.939 1.00 0.00 C ATOM 2755 CB TRP 379 6.213 8.055 46.855 1.00 0.00 C ATOM 2756 C TRP 379 3.892 8.139 46.011 1.00 0.00 C ATOM 2757 O TRP 379 3.803 8.482 44.820 1.00 0.00 O ATOM 2758 CG TRP 379 6.509 7.451 45.502 1.00 0.00 C ATOM 2759 CD1 TRP 379 7.040 8.037 44.390 1.00 0.00 C ATOM 2760 CD2 TRP 379 6.286 6.094 45.096 1.00 0.00 C ATOM 2761 NE1 TRP 379 7.170 7.219 43.364 1.00 0.00 N ATOM 2762 CE2 TRP 379 6.713 5.985 43.747 1.00 0.00 C ATOM 2763 CE3 TRP 379 5.766 4.951 45.740 1.00 0.00 C ATOM 2764 CZ2 TRP 379 6.636 4.767 43.018 1.00 0.00 C ATOM 2765 CZ3 TRP 379 5.685 3.724 45.015 1.00 0.00 C ATOM 2766 CH2 TRP 379 6.120 3.653 43.667 1.00 0.00 C ATOM 2767 N SER 380 3.083 7.247 46.581 1.00 0.00 N ATOM 2768 CA SER 380 2.056 6.486 45.739 1.00 0.00 C ATOM 2769 CB SER 380 1.403 5.242 46.396 1.00 0.00 C ATOM 2770 C SER 380 0.857 7.323 45.327 1.00 0.00 C ATOM 2771 O SER 380 -0.121 6.830 44.766 1.00 0.00 O ATOM 2772 OG SER 380 0.611 5.636 47.507 1.00 0.00 O ATOM 2773 N GLU 381 0.901 8.592 45.712 1.00 0.00 N ATOM 2774 CA GLU 381 -0.064 9.626 45.458 1.00 0.00 C ATOM 2775 CB GLU 381 -0.019 10.100 44.005 1.00 0.00 C ATOM 2776 C GLU 381 -1.327 9.394 46.517 1.00 0.00 C ATOM 2777 O GLU 381 -1.659 10.360 47.191 1.00 0.00 O ATOM 2778 CG GLU 381 1.280 10.819 43.637 1.00 0.00 C ATOM 2779 CD GLU 381 1.228 11.156 42.154 1.00 0.00 C ATOM 2780 OE1 GLU 381 0.211 10.797 41.501 1.00 0.00 O ATOM 2781 OE2 GLU 381 2.203 11.776 41.653 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 83.23 48.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 88.13 45.5 22 100.0 22 ARMSMC SURFACE . . . . . . . . 83.03 50.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 84.23 40.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.48 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 87.62 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 84.24 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 91.35 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 73.59 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.50 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 86.70 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 79.22 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 78.13 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 3.63 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 54.58 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 58.88 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 26.93 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 54.58 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 13.35 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 13.35 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 13.35 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.62 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.62 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3427 CRMSCA SECONDARY STRUCTURE . . 6.25 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.74 26 100.0 26 CRMSCA BURIED . . . . . . . . 10.00 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.72 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.41 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.84 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.01 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.05 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 13.16 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.09 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.12 119 99.2 120 CRMSSC BURIED . . . . . . . . 12.12 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.92 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.74 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.07 223 99.6 224 CRMSALL BURIED . . . . . . . . 10.68 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.476 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.970 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 9.523 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 9.232 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.563 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 6.041 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 9.672 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 8.947 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.733 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 11.755 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 8.589 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.758 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 11.433 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.621 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 7.167 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 10.751 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 9.656 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 19 31 31 DISTCA CA (P) 0.00 0.00 3.23 16.13 61.29 31 DISTCA CA (RMS) 0.00 0.00 2.47 3.56 6.38 DISTCA ALL (N) 0 1 9 38 134 253 254 DISTALL ALL (P) 0.00 0.39 3.54 14.96 52.76 254 DISTALL ALL (RMS) 0.00 1.70 2.49 3.82 6.66 DISTALL END of the results output