####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS104_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS104_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 351 - 366 4.32 21.19 LCS_AVERAGE: 47.87 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 366 - 373 1.73 21.26 LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.88 27.26 LCS_AVERAGE: 20.81 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 366 - 370 0.98 22.29 LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.56 19.68 LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.87 26.88 LCS_AVERAGE: 13.42 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 6 16 3 4 4 6 7 9 10 11 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT A 352 A 352 3 6 16 3 4 4 6 7 9 10 11 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT E 353 E 353 3 6 16 3 3 4 5 6 7 10 11 11 12 14 15 16 16 16 16 17 18 18 19 LCS_GDT E 354 E 354 3 6 16 3 4 4 4 6 6 8 8 10 12 13 15 16 16 16 16 17 18 18 19 LCS_GDT L 355 L 355 4 6 16 3 4 4 5 6 6 8 9 10 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT G 356 G 356 4 6 16 3 4 4 5 6 9 10 11 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT N 357 N 357 4 4 16 3 4 4 6 7 9 10 11 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT I 358 I 358 4 4 16 3 4 4 4 7 9 10 11 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT I 359 I 359 4 5 16 3 3 4 6 7 9 10 11 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT V 360 V 360 4 5 16 3 4 4 5 6 6 7 8 10 12 14 15 16 16 16 16 17 18 18 19 LCS_GDT A 361 A 361 4 5 16 3 4 4 5 6 6 7 10 11 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT W 362 W 362 4 5 16 3 4 4 6 7 9 10 11 12 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT N 363 N 363 3 5 16 3 3 4 6 7 9 10 11 12 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT P 364 P 364 3 4 16 3 3 4 5 6 9 10 11 12 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT N 365 N 365 3 7 16 3 3 4 5 6 9 10 11 12 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT L 366 L 366 5 8 16 3 4 5 7 8 9 10 11 12 13 14 15 16 16 16 16 17 18 18 19 LCS_GDT W 367 W 367 5 8 15 0 4 5 7 8 9 10 11 12 13 13 13 13 14 14 15 17 17 17 19 LCS_GDT K 368 K 368 5 8 15 3 5 5 7 8 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT K 369 K 369 5 8 15 4 5 5 7 8 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT G 370 G 370 5 8 15 4 5 5 7 8 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT T 371 T 371 5 8 15 4 5 5 7 8 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT N 372 N 372 5 8 15 4 5 5 7 8 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT G 373 G 373 5 8 15 4 4 5 6 8 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT Y 374 Y 374 5 8 15 4 4 5 6 7 9 10 11 12 13 13 13 13 14 14 14 15 16 17 19 LCS_GDT P 375 P 375 5 8 15 4 4 5 6 7 8 8 8 8 8 9 9 9 10 13 14 15 16 17 19 LCS_GDT I 376 I 376 5 8 14 4 4 5 6 7 8 8 8 8 8 9 9 10 12 13 14 15 16 17 19 LCS_GDT F 377 F 377 5 8 11 3 4 5 6 7 8 8 8 8 8 9 9 9 10 11 11 15 16 17 19 LCS_GDT Q 378 Q 378 4 8 11 3 4 5 6 7 8 8 8 8 8 9 9 9 10 11 11 12 14 17 19 LCS_GDT W 379 W 379 4 8 11 3 4 5 6 7 8 8 8 8 8 9 9 9 10 11 13 15 18 18 19 LCS_GDT S 380 S 380 4 4 11 3 3 4 4 4 4 5 5 7 8 9 9 9 9 10 13 15 16 17 19 LCS_GDT E 381 E 381 4 4 11 0 3 4 4 4 4 5 6 7 7 8 8 9 11 11 13 15 18 18 19 LCS_AVERAGE LCS_A: 27.37 ( 13.42 20.81 47.87 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 7 8 9 10 11 12 13 14 15 16 16 16 16 17 18 18 19 GDT PERCENT_AT 12.90 16.13 16.13 22.58 25.81 29.03 32.26 35.48 38.71 41.94 45.16 48.39 51.61 51.61 51.61 51.61 54.84 58.06 58.06 61.29 GDT RMS_LOCAL 0.21 0.56 0.56 1.41 1.73 2.08 2.38 2.59 2.93 3.28 3.88 3.99 4.32 4.32 4.32 4.32 5.01 6.37 6.37 6.98 GDT RMS_ALL_AT 19.79 19.68 19.68 21.64 21.26 20.95 23.19 22.59 20.47 19.89 20.27 20.86 21.19 21.19 21.19 21.19 19.88 15.65 15.65 15.15 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 1.386 0 0.131 0.692 4.391 79.286 71.190 LGA A 352 A 352 1.414 0 0.063 0.063 2.595 73.214 73.143 LGA E 353 E 353 3.772 0 0.446 0.954 6.220 42.857 31.481 LGA E 354 E 354 7.119 0 0.126 0.669 10.534 14.167 6.878 LGA L 355 L 355 6.263 0 0.596 1.086 9.559 24.048 15.238 LGA G 356 G 356 2.780 0 0.025 0.025 4.013 56.071 56.071 LGA N 357 N 357 2.329 0 0.063 1.174 4.103 60.119 52.560 LGA I 358 I 358 2.422 0 0.510 1.363 5.020 56.548 57.202 LGA I 359 I 359 2.470 0 0.584 0.537 3.895 56.071 62.738 LGA V 360 V 360 6.365 0 0.354 0.971 10.911 19.524 11.361 LGA A 361 A 361 6.250 0 0.055 0.071 8.028 26.667 22.286 LGA W 362 W 362 2.087 0 0.595 1.362 10.451 75.357 35.442 LGA N 363 N 363 2.051 0 0.122 0.137 3.439 59.167 61.071 LGA P 364 P 364 3.068 0 0.706 0.635 5.380 47.738 54.014 LGA N 365 N 365 3.511 0 0.480 0.378 5.752 37.024 41.964 LGA L 366 L 366 9.608 0 0.472 1.322 13.350 2.619 1.310 LGA W 367 W 367 14.367 0 0.420 1.329 20.860 0.000 0.000 LGA K 368 K 368 17.596 0 0.229 0.661 21.157 0.000 0.000 LGA K 369 K 369 23.682 0 0.214 0.953 27.782 0.000 0.000 LGA G 370 G 370 28.830 0 0.047 0.047 30.741 0.000 0.000 LGA T 371 T 371 34.658 0 0.054 1.186 38.433 0.000 0.000 LGA N 372 N 372 37.650 0 0.530 1.339 37.891 0.000 0.000 LGA G 373 G 373 37.221 0 0.624 0.624 37.348 0.000 0.000 LGA Y 374 Y 374 34.883 0 0.062 0.209 37.393 0.000 0.000 LGA P 375 P 375 33.458 0 0.082 0.274 34.579 0.000 0.000 LGA I 376 I 376 31.548 0 0.264 1.340 32.365 0.000 0.000 LGA F 377 F 377 31.662 0 0.187 1.033 35.435 0.000 0.000 LGA Q 378 Q 378 30.713 0 0.599 0.764 34.907 0.000 0.000 LGA W 379 W 379 34.947 0 0.409 1.400 39.465 0.000 0.000 LGA S 380 S 380 35.794 0 0.612 0.567 38.049 0.000 0.000 LGA E 381 E 381 42.367 1 0.339 0.597 45.666 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 12.219 12.171 12.616 23.564 21.095 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.59 31.452 30.104 0.410 LGA_LOCAL RMSD: 2.586 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 22.592 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 12.219 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.557098 * X + -0.761933 * Y + 0.330302 * Z + 6.698482 Y_new = 0.737072 * X + 0.270431 * Y + -0.619348 * Z + -37.168488 Z_new = 0.382578 * X + 0.588494 * Y + 0.712256 * Z + -43.157120 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.923577 -0.392585 0.690537 [DEG: 52.9171 -22.4935 39.5648 ] ZXZ: 0.489936 0.778089 0.576443 [DEG: 28.0712 44.5812 33.0278 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS104_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS104_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.59 30.104 12.22 REMARK ---------------------------------------------------------- MOLECULE T0537TS104_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 5.544 10.942 49.318 1.00493.46 N ATOM 2530 CA SER 351 4.864 12.089 49.822 1.00493.46 C ATOM 2531 CB SER 351 3.400 11.790 50.187 1.00493.46 C ATOM 2532 OG SER 351 2.661 11.454 49.021 1.00493.46 O ATOM 2533 C SER 351 5.495 12.739 51.001 1.00493.46 C ATOM 2534 O SER 351 5.874 12.118 51.996 1.00493.46 O ATOM 2535 N ALA 352 5.607 14.073 50.859 1.00346.12 N ATOM 2536 CA ALA 352 6.153 14.958 51.841 1.00346.12 C ATOM 2537 CB ALA 352 6.349 16.374 51.284 1.00346.12 C ATOM 2538 C ALA 352 5.287 15.071 53.049 1.00346.12 C ATOM 2539 O ALA 352 5.799 14.898 54.150 1.00346.12 O ATOM 2540 N GLU 353 3.964 15.306 52.863 1.00401.83 N ATOM 2541 CA GLU 353 3.010 15.568 53.917 1.00401.83 C ATOM 2542 CB GLU 353 2.206 14.343 54.398 1.00401.83 C ATOM 2543 CG GLU 353 1.148 13.883 53.391 1.00401.83 C ATOM 2544 CD GLU 353 0.426 12.678 53.972 1.00401.83 C ATOM 2545 OE1 GLU 353 0.648 12.376 55.176 1.00401.83 O ATOM 2546 OE2 GLU 353 -0.357 12.042 53.219 1.00401.83 O ATOM 2547 C GLU 353 3.676 16.240 55.076 1.00401.83 C ATOM 2548 O GLU 353 4.545 17.094 54.910 1.00401.83 O ATOM 2549 N GLU 354 3.264 15.863 56.290 1.00440.71 N ATOM 2550 CA GLU 354 3.823 16.370 57.501 1.00440.71 C ATOM 2551 CB GLU 354 2.985 15.983 58.724 1.00440.71 C ATOM 2552 CG GLU 354 1.706 16.816 58.873 1.00440.71 C ATOM 2553 CD GLU 354 0.611 16.273 57.963 1.00440.71 C ATOM 2554 OE1 GLU 354 0.792 15.154 57.415 1.00440.71 O ATOM 2555 OE2 GLU 354 -0.428 16.971 57.812 1.00440.71 O ATOM 2556 C GLU 354 5.222 15.861 57.650 1.00440.71 C ATOM 2557 O GLU 354 6.010 16.406 58.420 1.00440.71 O ATOM 2558 N LEU 355 5.558 14.765 56.949 1.00633.10 N ATOM 2559 CA LEU 355 6.853 14.177 57.117 1.00633.10 C ATOM 2560 CB LEU 355 6.982 12.850 56.375 1.00633.10 C ATOM 2561 CG LEU 355 8.227 12.025 56.730 1.00633.10 C ATOM 2562 CD1 LEU 355 9.569 12.695 56.433 1.00633.10 C ATOM 2563 CD2 LEU 355 8.134 11.448 58.134 1.00633.10 C ATOM 2564 C LEU 355 7.891 15.079 56.535 1.00633.10 C ATOM 2565 O LEU 355 8.008 15.241 55.324 1.00633.10 O ATOM 2566 N GLY 356 8.730 15.638 57.412 1.00459.62 N ATOM 2567 CA GLY 356 9.759 16.545 57.017 1.00459.62 C ATOM 2568 C GLY 356 10.866 15.940 56.207 1.00459.62 C ATOM 2569 O GLY 356 11.242 16.471 55.166 1.00459.62 O ATOM 2570 N ASN 357 11.451 14.828 56.671 1.00681.93 N ATOM 2571 CA ASN 357 12.682 14.467 56.064 1.00681.93 C ATOM 2572 CB ASN 357 13.657 13.792 57.039 1.00681.93 C ATOM 2573 CG ASN 357 13.059 12.473 57.447 1.00681.93 C ATOM 2574 OD1 ASN 357 13.157 11.526 56.671 1.00681.93 O ATOM 2575 ND2 ASN 357 12.440 12.409 58.656 1.00681.93 N ATOM 2576 C ASN 357 12.645 13.697 54.795 1.00681.93 C ATOM 2577 O ASN 357 13.311 14.133 53.863 1.00681.93 O ATOM 2578 N ILE 358 11.810 12.629 54.730 1.00957.95 N ATOM 2579 CA ILE 358 11.812 11.529 53.795 1.00957.95 C ATOM 2580 CB ILE 358 10.476 11.394 53.135 1.00957.95 C ATOM 2581 CG2 ILE 358 10.229 12.612 52.236 1.00957.95 C ATOM 2582 CG1 ILE 358 10.308 10.024 52.479 1.00957.95 C ATOM 2583 CD1 ILE 358 11.324 9.671 51.401 1.00957.95 C ATOM 2584 C ILE 358 12.944 11.701 52.826 1.00957.95 C ATOM 2585 O ILE 358 12.791 11.959 51.634 1.00957.95 O ATOM 2586 N ILE 359 14.159 11.521 53.376 1.00566.09 N ATOM 2587 CA ILE 359 15.377 11.738 52.652 1.00566.09 C ATOM 2588 CB ILE 359 15.811 13.196 52.601 1.00566.09 C ATOM 2589 CG2 ILE 359 17.292 13.338 52.218 1.00566.09 C ATOM 2590 CG1 ILE 359 14.909 13.988 51.645 1.00566.09 C ATOM 2591 CD1 ILE 359 15.236 15.482 51.612 1.00566.09 C ATOM 2592 C ILE 359 16.457 10.926 53.280 1.00566.09 C ATOM 2593 O ILE 359 16.391 10.590 54.462 1.00566.09 O ATOM 2594 N VAL 360 17.479 10.560 52.481 1.00637.34 N ATOM 2595 CA VAL 360 18.528 9.760 53.028 1.00637.34 C ATOM 2596 CB VAL 360 18.389 8.374 52.457 1.00637.34 C ATOM 2597 CG1 VAL 360 18.631 8.465 50.945 1.00637.34 C ATOM 2598 CG2 VAL 360 19.314 7.386 53.173 1.00637.34 C ATOM 2599 C VAL 360 19.884 10.301 52.635 1.00637.34 C ATOM 2600 O VAL 360 20.836 9.549 52.450 1.00637.34 O ATOM 2601 N ALA 361 20.000 11.617 52.433 1.00440.90 N ATOM 2602 CA ALA 361 21.216 12.355 52.177 1.00440.90 C ATOM 2603 CB ALA 361 20.961 13.732 51.549 1.00440.90 C ATOM 2604 C ALA 361 21.954 12.595 53.437 1.00440.90 C ATOM 2605 O ALA 361 23.148 12.892 53.441 1.00440.90 O ATOM 2606 N TRP 362 21.173 12.600 54.523 1.00925.31 N ATOM 2607 CA TRP 362 21.524 12.809 55.885 1.00925.31 C ATOM 2608 CB TRP 362 20.714 11.782 56.733 1.00925.31 C ATOM 2609 CG TRP 362 20.760 10.341 56.177 1.00925.31 C ATOM 2610 CD2 TRP 362 20.039 9.192 56.668 1.00925.31 C ATOM 2611 CD1 TRP 362 21.454 9.879 55.096 1.00925.31 C ATOM 2612 NE1 TRP 362 21.217 8.551 54.883 1.00925.31 N ATOM 2613 CE2 TRP 362 20.347 8.108 55.840 1.00925.31 C ATOM 2614 CE3 TRP 362 19.183 9.035 57.708 1.00925.31 C ATOM 2615 CZ2 TRP 362 19.810 6.868 56.039 1.00925.31 C ATOM 2616 CZ3 TRP 362 18.651 7.778 57.914 1.00925.31 C ATOM 2617 CH2 TRP 362 18.954 6.710 57.097 1.00925.31 C ATOM 2618 C TRP 362 22.969 12.528 56.155 1.00925.31 C ATOM 2619 O TRP 362 23.448 11.402 56.103 1.00925.31 O ATOM 2620 N ASN 363 23.760 13.570 56.439 1.00370.13 N ATOM 2621 CA ASN 363 25.046 13.251 56.977 1.00370.13 C ATOM 2622 CB ASN 363 26.195 13.814 56.129 1.00370.13 C ATOM 2623 CG ASN 363 27.508 13.248 56.641 1.00370.13 C ATOM 2624 OD1 ASN 363 27.580 12.671 57.725 1.00370.13 O ATOM 2625 ND2 ASN 363 28.589 13.425 55.837 1.00370.13 N ATOM 2626 C ASN 363 25.098 13.968 58.303 1.00370.13 C ATOM 2627 O ASN 363 25.886 14.905 58.418 1.00370.13 O ATOM 2628 N PRO 364 24.339 13.611 59.322 1.00578.17 N ATOM 2629 CA PRO 364 24.474 14.385 60.525 1.00578.17 C ATOM 2630 CD PRO 364 22.950 13.187 59.156 1.00578.17 C ATOM 2631 CB PRO 364 23.122 14.382 61.226 1.00578.17 C ATOM 2632 CG PRO 364 22.119 14.039 60.121 1.00578.17 C ATOM 2633 C PRO 364 25.545 13.829 61.387 1.00578.17 C ATOM 2634 O PRO 364 26.022 12.732 61.113 1.00578.17 O ATOM 2635 N ASN 365 25.945 14.578 62.423 1.00648.82 N ATOM 2636 CA ASN 365 26.914 14.033 63.320 1.00648.82 C ATOM 2637 CB ASN 365 28.231 14.824 63.330 1.00648.82 C ATOM 2638 CG ASN 365 28.967 14.542 62.027 1.00648.82 C ATOM 2639 OD1 ASN 365 29.231 13.390 61.684 1.00648.82 O ATOM 2640 ND2 ASN 365 29.309 15.622 61.277 1.00648.82 N ATOM 2641 C ASN 365 26.344 14.047 64.710 1.00648.82 C ATOM 2642 O ASN 365 26.667 14.924 65.513 1.00648.82 O ATOM 2643 N LEU 366 25.489 13.048 65.024 1.00757.27 N ATOM 2644 CA LEU 366 24.931 12.843 66.333 1.00757.27 C ATOM 2645 CB LEU 366 23.549 12.171 66.330 1.00757.27 C ATOM 2646 CG LEU 366 22.414 13.047 65.787 1.00757.27 C ATOM 2647 CD1 LEU 366 21.077 12.289 65.824 1.00757.27 C ATOM 2648 CD2 LEU 366 22.359 14.398 66.519 1.00757.27 C ATOM 2649 C LEU 366 25.824 11.846 66.977 1.00757.27 C ATOM 2650 O LEU 366 25.371 10.829 67.497 1.00757.27 O ATOM 2651 N TRP 367 27.115 12.180 67.051 1.00871.88 N ATOM 2652 CA TRP 367 28.100 11.224 67.429 1.00871.88 C ATOM 2653 CB TRP 367 29.480 11.694 66.941 1.00871.88 C ATOM 2654 CG TRP 367 30.598 10.687 66.864 1.00871.88 C ATOM 2655 CD2 TRP 367 31.845 10.992 66.223 1.00871.88 C ATOM 2656 CD1 TRP 367 30.685 9.392 67.278 1.00871.88 C ATOM 2657 NE1 TRP 367 31.910 8.869 66.934 1.00871.88 N ATOM 2658 CE2 TRP 367 32.634 9.845 66.282 1.00871.88 C ATOM 2659 CE3 TRP 367 32.288 12.134 65.630 1.00871.88 C ATOM 2660 CZ2 TRP 367 33.889 9.823 65.743 1.00871.88 C ATOM 2661 CZ3 TRP 367 33.553 12.111 65.092 1.00871.88 C ATOM 2662 CH2 TRP 367 34.341 10.979 65.146 1.00871.88 C ATOM 2663 C TRP 367 28.139 11.060 68.913 1.00871.88 C ATOM 2664 O TRP 367 29.199 11.215 69.508 1.00871.88 O ATOM 2665 N LYS 368 27.014 10.689 69.562 1.00794.99 N ATOM 2666 CA LYS 368 27.122 10.423 70.971 1.00794.99 C ATOM 2667 CB LYS 368 25.806 10.120 71.717 1.00794.99 C ATOM 2668 CG LYS 368 24.828 11.274 71.905 1.00794.99 C ATOM 2669 CD LYS 368 23.565 10.843 72.658 1.00794.99 C ATOM 2670 CE LYS 368 22.747 9.774 71.932 1.00794.99 C ATOM 2671 NZ LYS 368 21.764 9.163 72.854 1.00794.99 N ATOM 2672 C LYS 368 27.842 9.130 71.011 1.00794.99 C ATOM 2673 O LYS 368 27.244 8.082 70.794 1.00794.99 O ATOM 2674 N LYS 369 29.139 9.157 71.330 1.00506.93 N ATOM 2675 CA LYS 369 29.906 7.958 71.240 1.00506.93 C ATOM 2676 CB LYS 369 31.398 8.285 71.125 1.00506.93 C ATOM 2677 CG LYS 369 31.792 9.323 72.175 1.00506.93 C ATOM 2678 CD LYS 369 33.263 9.717 72.170 1.00506.93 C ATOM 2679 CE LYS 369 33.551 10.901 73.093 1.00506.93 C ATOM 2680 NZ LYS 369 34.991 11.225 73.058 1.00506.93 N ATOM 2681 C LYS 369 29.715 7.139 72.467 1.00506.93 C ATOM 2682 O LYS 369 30.386 7.350 73.477 1.00506.93 O ATOM 2683 N GLY 370 28.792 6.163 72.398 1.00407.14 N ATOM 2684 CA GLY 370 28.625 5.278 73.503 1.00407.14 C ATOM 2685 C GLY 370 29.705 4.274 73.345 1.00407.14 C ATOM 2686 O GLY 370 30.185 4.022 72.240 1.00407.14 O ATOM 2687 N THR 371 30.054 3.646 74.472 1.00579.52 N ATOM 2688 CA THR 371 31.160 2.759 74.599 1.00579.52 C ATOM 2689 CB THR 371 31.493 2.450 76.026 1.00579.52 C ATOM 2690 OG1 THR 371 32.727 1.752 76.091 1.00579.52 O ATOM 2691 CG2 THR 371 30.362 1.611 76.643 1.00579.52 C ATOM 2692 C THR 371 30.985 1.475 73.870 1.00579.52 C ATOM 2693 O THR 371 31.998 0.883 73.499 1.00579.52 O ATOM 2694 N ASN 372 29.724 1.028 73.657 1.00585.71 N ATOM 2695 CA ASN 372 29.407 -0.290 73.164 1.00585.71 C ATOM 2696 CB ASN 372 27.940 -0.466 72.737 1.00585.71 C ATOM 2697 CG ASN 372 27.117 -0.618 74.019 1.00585.71 C ATOM 2698 OD1 ASN 372 27.457 -1.409 74.899 1.00585.71 O ATOM 2699 ND2 ASN 372 26.007 0.159 74.135 1.00585.71 N ATOM 2700 C ASN 372 30.342 -0.709 72.087 1.00585.71 C ATOM 2701 O ASN 372 30.497 -0.068 71.051 1.00585.71 O ATOM 2702 N GLY 373 31.060 -1.805 72.378 1.00317.35 N ATOM 2703 CA GLY 373 32.024 -2.299 71.460 1.00317.35 C ATOM 2704 C GLY 373 31.232 -3.071 70.484 1.00317.35 C ATOM 2705 O GLY 373 30.747 -4.158 70.783 1.00317.35 O ATOM 2706 N TYR 374 31.066 -2.516 69.277 1.00691.36 N ATOM 2707 CA TYR 374 30.338 -3.266 68.316 1.00691.36 C ATOM 2708 CB TYR 374 29.323 -2.492 67.464 1.00691.36 C ATOM 2709 CG TYR 374 28.259 -1.968 68.350 1.00691.36 C ATOM 2710 CD1 TYR 374 27.128 -2.690 68.649 1.00691.36 C ATOM 2711 CD2 TYR 374 28.412 -0.724 68.892 1.00691.36 C ATOM 2712 CE1 TYR 374 26.165 -2.158 69.479 1.00691.36 C ATOM 2713 CE2 TYR 374 27.456 -0.187 69.716 1.00691.36 C ATOM 2714 CZ TYR 374 26.326 -0.902 70.014 1.00691.36 C ATOM 2715 OH TYR 374 25.346 -0.343 70.862 1.00691.36 O ATOM 2716 C TYR 374 31.350 -3.745 67.365 1.00691.36 C ATOM 2717 O TYR 374 32.082 -2.979 66.740 1.00691.36 O ATOM 2718 N PRO 375 31.421 -5.025 67.278 1.00504.01 N ATOM 2719 CA PRO 375 32.319 -5.558 66.324 1.00504.01 C ATOM 2720 CD PRO 375 31.274 -5.897 68.426 1.00504.01 C ATOM 2721 CB PRO 375 32.498 -7.037 66.671 1.00504.01 C ATOM 2722 CG PRO 375 31.500 -7.290 67.820 1.00504.01 C ATOM 2723 C PRO 375 31.744 -5.246 64.997 1.00504.01 C ATOM 2724 O PRO 375 30.547 -5.435 64.793 1.00504.01 O ATOM 2725 N ILE 376 32.576 -4.768 64.069 1.00903.86 N ATOM 2726 CA ILE 376 32.029 -4.418 62.808 1.00903.86 C ATOM 2727 CB ILE 376 32.539 -3.095 62.325 1.00903.86 C ATOM 2728 CG2 ILE 376 32.066 -2.931 60.881 1.00903.86 C ATOM 2729 CG1 ILE 376 32.099 -1.942 63.241 1.00903.86 C ATOM 2730 CD1 ILE 376 30.591 -1.691 63.246 1.00903.86 C ATOM 2731 C ILE 376 32.477 -5.440 61.833 1.00903.86 C ATOM 2732 O ILE 376 33.669 -5.561 61.564 1.00903.86 O ATOM 2733 N PHE 377 31.526 -6.215 61.278 1.00796.93 N ATOM 2734 CA PHE 377 31.941 -7.165 60.297 1.00796.93 C ATOM 2735 CB PHE 377 31.055 -8.411 60.161 1.00796.93 C ATOM 2736 CG PHE 377 31.095 -9.178 61.425 1.00796.93 C ATOM 2737 CD1 PHE 377 32.208 -9.906 61.762 1.00796.93 C ATOM 2738 CD2 PHE 377 30.023 -9.153 62.283 1.00796.93 C ATOM 2739 CE1 PHE 377 32.245 -10.615 62.937 1.00796.93 C ATOM 2740 CE2 PHE 377 30.055 -9.863 63.458 1.00796.93 C ATOM 2741 CZ PHE 377 31.166 -10.598 63.787 1.00796.93 C ATOM 2742 C PHE 377 31.778 -6.471 59.004 1.00796.93 C ATOM 2743 O PHE 377 30.663 -6.273 58.529 1.00796.93 O ATOM 2744 N GLN 378 32.895 -6.077 58.389 1.00503.17 N ATOM 2745 CA GLN 378 32.762 -5.440 57.127 1.00503.17 C ATOM 2746 CB GLN 378 33.982 -4.579 56.819 1.00503.17 C ATOM 2747 CG GLN 378 34.023 -3.441 57.833 1.00503.17 C ATOM 2748 CD GLN 378 35.388 -2.807 57.816 1.00503.17 C ATOM 2749 OE1 GLN 378 36.351 -3.374 58.326 1.00503.17 O ATOM 2750 NE2 GLN 378 35.471 -1.588 57.226 1.00503.17 N ATOM 2751 C GLN 378 32.619 -6.548 56.167 1.00503.17 C ATOM 2752 O GLN 378 33.582 -7.202 55.782 1.00503.17 O ATOM 2753 N TRP 379 31.366 -6.789 55.768 1.00999.99 N ATOM 2754 CA TRP 379 31.064 -7.907 54.943 1.00999.99 C ATOM 2755 CB TRP 379 29.759 -8.537 55.452 1.00999.99 C ATOM 2756 CG TRP 379 29.244 -9.745 54.728 1.00999.99 C ATOM 2757 CD2 TRP 379 29.751 -11.070 54.924 1.00999.99 C ATOM 2758 CD1 TRP 379 28.242 -9.844 53.810 1.00999.99 C ATOM 2759 NE1 TRP 379 28.084 -11.156 53.432 1.00999.99 N ATOM 2760 CE2 TRP 379 29.010 -11.920 54.108 1.00999.99 C ATOM 2761 CE3 TRP 379 30.753 -11.539 55.723 1.00999.99 C ATOM 2762 CZ2 TRP 379 29.258 -13.262 54.076 1.00999.99 C ATOM 2763 CZ3 TRP 379 31.004 -12.893 55.687 1.00999.99 C ATOM 2764 CH2 TRP 379 30.271 -13.738 54.880 1.00999.99 C ATOM 2765 C TRP 379 30.870 -7.405 53.554 1.00999.99 C ATOM 2766 O TRP 379 29.744 -7.239 53.100 1.00999.99 O ATOM 2767 N SER 380 31.973 -7.222 52.810 1.00417.32 N ATOM 2768 CA SER 380 31.898 -6.697 51.478 1.00417.32 C ATOM 2769 CB SER 380 33.276 -6.615 50.799 1.00417.32 C ATOM 2770 OG SER 380 34.117 -5.714 51.504 1.00417.32 O ATOM 2771 C SER 380 31.061 -7.625 50.667 1.00417.32 C ATOM 2772 O SER 380 30.300 -7.194 49.801 1.00417.32 O ATOM 2773 N GLU 381 31.163 -8.938 50.928 1.00460.11 N ATOM 2774 CA GLU 381 30.355 -9.832 50.159 1.00460.11 C ATOM 2775 CB GLU 381 28.862 -9.487 50.271 1.00460.11 C ATOM 2776 CG GLU 381 27.941 -10.404 49.471 1.00460.11 C ATOM 2777 CD GLU 381 26.530 -9.842 49.582 1.00460.11 C ATOM 2778 OE1 GLU 381 26.000 -9.789 50.723 1.00460.11 O ATOM 2779 OE2 GLU 381 25.966 -9.452 48.525 1.00460.11 O ATOM 2780 C GLU 381 30.747 -9.666 48.701 1.00460.11 C ATOM 2781 O GLU 381 29.872 -9.201 47.923 1.00460.11 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.05 46.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 76.44 50.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 77.88 44.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 66.21 60.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.53 38.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 89.87 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 93.61 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 93.46 39.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 63.65 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.71 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 59.29 62.5 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 81.80 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 67.56 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 42.98 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.97 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 60.41 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 18.48 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 70.97 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 11.63 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 11.63 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 11.63 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.22 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.22 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3942 CRMSCA SECONDARY STRUCTURE . . 10.06 11 100.0 11 CRMSCA SURFACE . . . . . . . . 12.33 26 100.0 26 CRMSCA BURIED . . . . . . . . 11.64 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.24 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.94 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.38 129 100.0 129 CRMSMC BURIED . . . . . . . . 11.38 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.29 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 13.76 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.98 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.32 119 99.2 120 CRMSSC BURIED . . . . . . . . 12.84 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.76 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 9.92 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.88 223 99.6 224 CRMSALL BURIED . . . . . . . . 11.79 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 591.031 0.958 0.959 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 580.934 0.964 0.965 11 100.0 11 ERRCA SURFACE . . . . . . . . 607.832 0.958 0.959 26 100.0 26 ERRCA BURIED . . . . . . . . 503.665 0.955 0.956 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 595.137 0.958 0.959 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 583.484 0.965 0.965 54 100.0 54 ERRMC SURFACE . . . . . . . . 610.111 0.959 0.960 129 100.0 129 ERRMC BURIED . . . . . . . . 511.153 0.957 0.958 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 674.141 0.962 0.963 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 685.552 0.960 0.961 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 661.832 0.968 0.969 41 100.0 41 ERRSC SURFACE . . . . . . . . 683.990 0.962 0.963 119 99.2 120 ERRSC BURIED . . . . . . . . 556.932 0.957 0.958 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 633.417 0.960 0.961 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 620.044 0.966 0.967 85 100.0 85 ERRALL SURFACE . . . . . . . . 648.441 0.960 0.961 223 99.6 224 ERRALL BURIED . . . . . . . . 521.745 0.957 0.958 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 3 9 31 31 DISTCA CA (P) 0.00 0.00 3.23 9.68 29.03 31 DISTCA CA (RMS) 0.00 0.00 2.63 3.07 6.78 DISTCA ALL (N) 0 2 8 23 87 253 254 DISTALL ALL (P) 0.00 0.79 3.15 9.06 34.25 254 DISTALL ALL (RMS) 0.00 1.64 2.52 3.67 7.43 DISTALL END of the results output