####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS103_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS103_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 362 - 380 4.72 16.90 LONGEST_CONTINUOUS_SEGMENT: 19 363 - 381 4.79 18.33 LCS_AVERAGE: 57.96 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 362 - 368 1.85 11.27 LCS_AVERAGE: 17.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 362 - 366 0.45 10.52 LONGEST_CONTINUOUS_SEGMENT: 5 375 - 379 0.70 22.44 LCS_AVERAGE: 12.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 16 3 3 3 4 4 4 5 6 6 9 9 11 12 13 19 20 21 22 23 23 LCS_GDT A 352 A 352 3 4 16 3 3 3 4 4 4 5 6 6 7 8 14 15 16 19 20 21 22 23 23 LCS_GDT E 353 E 353 3 4 16 3 3 3 4 4 4 5 6 11 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT E 354 E 354 3 4 16 3 3 3 4 4 4 7 10 11 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT L 355 L 355 3 4 16 3 3 3 3 4 5 7 10 11 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT G 356 G 356 3 4 16 3 3 3 4 5 6 7 9 9 11 13 15 17 18 19 20 21 22 23 23 LCS_GDT N 357 N 357 4 4 16 3 3 4 4 5 6 7 9 9 11 13 14 17 18 18 19 21 22 23 23 LCS_GDT I 358 I 358 4 4 16 3 3 4 4 5 6 7 9 10 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT I 359 I 359 4 5 16 3 3 4 4 6 6 7 10 11 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT V 360 V 360 4 5 16 3 3 4 4 5 6 6 7 8 11 12 15 17 18 19 20 21 22 23 23 LCS_GDT A 361 A 361 3 5 17 3 3 4 4 5 6 7 9 11 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT W 362 W 362 5 7 19 4 5 5 6 6 7 9 10 11 12 13 15 17 18 19 20 21 22 23 23 LCS_GDT N 363 N 363 5 7 19 4 5 5 6 6 8 9 10 12 15 15 17 18 18 19 20 21 22 23 23 LCS_GDT P 364 P 364 5 7 19 4 5 5 6 6 8 9 12 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT N 365 N 365 5 7 19 4 5 5 6 7 9 11 12 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT L 366 L 366 5 7 19 4 5 5 6 6 9 11 12 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT W 367 W 367 4 7 19 3 4 4 6 7 9 11 12 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT K 368 K 368 4 7 19 3 3 5 5 7 9 11 12 13 16 16 17 18 18 18 19 21 22 23 23 LCS_GDT K 369 K 369 4 6 19 3 3 5 5 6 8 9 12 13 16 16 17 18 18 18 19 19 19 20 22 LCS_GDT G 370 G 370 4 6 19 3 3 5 5 7 9 11 12 13 16 16 17 18 18 18 19 19 19 20 21 LCS_GDT T 371 T 371 4 6 19 3 3 5 5 7 8 11 12 13 16 16 17 18 18 18 19 19 19 20 21 LCS_GDT N 372 N 372 3 6 19 3 3 4 5 7 9 11 12 13 16 16 17 18 18 18 19 19 19 20 21 LCS_GDT G 373 G 373 3 6 19 3 3 4 4 6 7 9 12 13 16 16 17 18 18 18 19 19 19 20 20 LCS_GDT Y 374 Y 374 3 6 19 3 3 4 5 6 9 11 12 13 16 16 17 18 18 18 19 19 19 20 21 LCS_GDT P 375 P 375 5 6 19 4 5 5 5 6 7 8 11 13 16 16 17 18 18 18 19 19 19 20 21 LCS_GDT I 376 I 376 5 6 19 4 5 5 5 6 9 11 12 13 16 16 17 18 18 18 19 21 22 23 23 LCS_GDT F 377 F 377 5 6 19 4 5 5 5 6 8 11 12 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT Q 378 Q 378 5 6 19 4 5 5 5 6 7 8 10 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT W 379 W 379 5 6 19 3 5 5 5 7 9 11 12 13 16 16 17 18 18 19 20 21 22 23 23 LCS_GDT S 380 S 380 3 4 19 3 3 3 3 3 5 5 6 11 15 16 17 18 18 18 20 21 22 23 23 LCS_GDT E 381 E 381 3 4 19 3 3 4 4 5 6 6 7 7 7 8 9 10 12 12 14 18 18 18 19 LCS_AVERAGE LCS_A: 29.45 ( 12.70 17.69 57.96 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 9 11 12 13 16 16 17 18 18 19 20 21 22 23 23 GDT PERCENT_AT 12.90 16.13 16.13 19.35 22.58 29.03 35.48 38.71 41.94 51.61 51.61 54.84 58.06 58.06 61.29 64.52 67.74 70.97 74.19 74.19 GDT RMS_LOCAL 0.31 0.45 0.45 1.06 1.81 2.21 2.50 2.77 2.92 3.47 3.47 3.74 4.10 4.10 5.15 5.35 5.56 5.89 6.10 6.10 GDT RMS_ALL_AT 10.38 10.52 10.52 11.06 18.98 18.79 18.74 18.92 18.83 18.43 18.43 18.37 17.89 17.89 11.32 11.36 11.36 10.92 10.88 10.88 # Checking swapping # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 39.571 0 0.362 0.720 41.027 0.000 0.000 LGA A 352 A 352 38.270 0 0.186 0.203 38.934 0.000 0.000 LGA E 353 E 353 36.627 0 0.578 0.926 38.773 0.000 0.000 LGA E 354 E 354 36.047 0 0.623 0.858 43.602 0.000 0.000 LGA L 355 L 355 30.768 0 0.606 0.636 33.107 0.000 0.000 LGA G 356 G 356 30.290 0 0.571 0.571 30.564 0.000 0.000 LGA N 357 N 357 30.149 0 0.167 0.149 36.939 0.000 0.000 LGA I 358 I 358 27.881 0 0.212 1.235 32.150 0.000 0.000 LGA I 359 I 359 21.399 0 0.571 0.942 24.004 0.000 0.000 LGA V 360 V 360 19.703 0 0.026 0.038 20.447 0.000 0.000 LGA A 361 A 361 18.275 0 0.671 0.611 19.145 0.000 0.000 LGA W 362 W 362 14.396 0 0.311 1.315 24.320 0.000 0.000 LGA N 363 N 363 9.692 0 0.018 0.212 11.585 5.238 4.345 LGA P 364 P 364 6.186 0 0.020 0.318 8.512 28.452 18.776 LGA N 365 N 365 1.155 0 0.032 0.113 4.263 65.357 62.976 LGA L 366 L 366 2.846 0 0.187 1.396 9.092 71.190 44.524 LGA W 367 W 367 2.051 0 0.652 0.611 6.328 63.095 38.367 LGA K 368 K 368 3.322 0 0.654 1.023 14.070 46.786 23.704 LGA K 369 K 369 4.586 0 0.063 0.792 12.371 42.024 20.741 LGA G 370 G 370 3.538 0 0.123 0.123 4.620 40.357 40.357 LGA T 371 T 371 3.032 0 0.681 0.995 4.290 50.357 44.694 LGA N 372 N 372 2.203 0 0.264 1.247 8.554 75.119 45.893 LGA G 373 G 373 4.270 0 0.080 0.080 5.413 42.857 42.857 LGA Y 374 Y 374 1.661 0 0.649 0.438 3.592 66.905 61.944 LGA P 375 P 375 5.395 0 0.066 0.081 8.961 40.833 26.667 LGA I 376 I 376 2.239 0 0.152 0.265 7.351 46.071 38.452 LGA F 377 F 377 3.590 0 0.055 1.115 10.533 51.905 26.277 LGA Q 378 Q 378 5.910 0 0.607 0.863 13.545 33.571 15.238 LGA W 379 W 379 1.284 0 0.709 1.727 7.854 63.333 46.701 LGA S 380 S 380 6.469 0 0.665 0.840 9.858 14.881 10.635 LGA E 381 E 381 11.544 1 0.605 1.072 18.921 0.357 0.143 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 9.523 9.456 10.047 27.377 19.784 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.77 34.677 31.460 0.419 LGA_LOCAL RMSD: 2.766 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.917 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.523 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.548367 * X + 0.647306 * Y + -0.529423 * Z + 15.396475 Y_new = 0.367322 * X + 0.755207 * Y + 0.542897 * Z + 10.995822 Z_new = 0.751244 * X + 0.103238 * Y + -0.651901 * Z + 51.970112 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.551391 -0.849945 2.984532 [DEG: 146.1839 -48.6982 171.0011 ] ZXZ: -2.368759 2.280885 1.434229 [DEG: -135.7199 130.6851 82.1753 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS103_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS103_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.77 31.460 9.52 REMARK ---------------------------------------------------------- MOLECULE T0537TS103_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 42.152 15.265 41.531 1.00999.00 N ATOM 2530 CA SER 351 42.756 15.763 40.300 1.00999.00 C ATOM 2531 CB SER 351 41.875 15.405 39.102 1.00999.00 C ATOM 2532 OG SER 351 42.473 15.818 37.886 1.00999.00 O ATOM 2533 O SER 351 43.942 17.738 40.937 1.00999.00 O ATOM 2534 C SER 351 43.006 17.273 40.289 1.00999.00 C ATOM 2535 N ALA 352 42.169 18.038 39.595 1.00999.00 N ATOM 2536 CA ALA 352 42.390 19.478 39.477 1.00999.00 C ATOM 2537 CB ALA 352 41.944 19.973 38.109 1.00999.00 C ATOM 2538 O ALA 352 41.914 21.545 40.602 1.00999.00 O ATOM 2539 C ALA 352 41.692 20.334 40.536 1.00999.00 C ATOM 2540 N GLU 353 40.836 19.711 41.343 1.00999.00 N ATOM 2541 CA GLU 353 40.197 20.433 42.428 1.00999.00 C ATOM 2542 CB GLU 353 38.881 19.759 42.817 1.00999.00 C ATOM 2543 CG GLU 353 38.108 20.491 43.904 1.00999.00 C ATOM 2544 CD GLU 353 37.589 21.839 43.443 1.00999.00 C ATOM 2545 OE1 GLU 353 37.592 22.089 42.219 1.00999.00 O ATOM 2546 OE2 GLU 353 37.182 22.645 44.306 1.00999.00 O ATOM 2547 O GLU 353 42.191 19.877 43.609 1.00999.00 O ATOM 2548 C GLU 353 41.134 20.511 43.618 1.00999.00 C ATOM 2549 N GLU 354 40.817 21.285 44.651 1.00999.00 N ATOM 2550 CA GLU 354 41.660 21.416 45.842 1.00999.00 C ATOM 2551 CB GLU 354 42.214 22.838 45.952 1.00999.00 C ATOM 2552 CG GLU 354 43.144 23.051 47.135 1.00999.00 C ATOM 2553 CD GLU 354 43.712 24.456 47.184 1.00999.00 C ATOM 2554 OE1 GLU 354 43.501 25.216 46.216 1.00999.00 O ATOM 2555 OE2 GLU 354 44.369 24.796 48.189 1.00999.00 O ATOM 2556 O GLU 354 39.746 21.616 47.278 1.00999.00 O ATOM 2557 C GLU 354 40.823 21.041 47.056 1.00999.00 C ATOM 2558 N LEU 355 41.294 20.040 47.806 1.00999.00 N ATOM 2559 CA LEU 355 40.590 19.564 48.989 1.00999.00 C ATOM 2560 CB LEU 355 40.595 18.036 49.036 1.00999.00 C ATOM 2561 CG LEU 355 39.945 17.319 47.850 1.00999.00 C ATOM 2562 CD1 LEU 355 40.096 15.812 47.985 1.00999.00 C ATOM 2563 CD2 LEU 355 38.477 17.694 47.735 1.00999.00 C ATOM 2564 O LEU 355 42.357 19.741 50.595 1.00999.00 O ATOM 2565 C LEU 355 41.246 20.153 50.227 1.00999.00 C ATOM 2566 N GLY 356 40.580 21.126 50.852 1.00999.00 N ATOM 2567 CA GLY 356 41.094 21.701 52.099 1.00999.00 C ATOM 2568 O GLY 356 39.919 19.910 53.148 1.00999.00 O ATOM 2569 C GLY 356 40.665 20.874 53.297 1.00999.00 C ATOM 2570 N ASN 357 40.235 22.180 56.894 1.00999.00 N ATOM 2571 CA ASN 357 40.247 23.620 57.145 1.00999.00 C ATOM 2572 CB ASN 357 41.683 24.140 57.226 1.00999.00 C ATOM 2573 CG ASN 357 42.386 23.714 58.500 1.00999.00 C ATOM 2574 ND2 ASN 357 43.713 23.745 58.482 1.00999.00 N ATOM 2575 OD1 ASN 357 41.742 23.364 59.488 1.00999.00 O ATOM 2576 O ASN 357 39.181 25.612 56.347 1.00999.00 O ATOM 2577 C ASN 357 39.478 24.443 56.109 1.00999.00 C ATOM 2578 N ILE 358 39.153 23.836 54.967 1.00999.00 N ATOM 2579 CA ILE 358 38.406 24.532 53.918 1.00999.00 C ATOM 2580 CB ILE 358 38.570 23.837 52.554 1.00999.00 C ATOM 2581 CG1 ILE 358 38.137 24.774 51.423 1.00999.00 C ATOM 2582 CG2 ILE 358 37.803 22.525 52.528 1.00999.00 C ATOM 2583 CD1 ILE 358 38.995 26.012 51.293 1.00999.00 C ATOM 2584 O ILE 358 36.194 25.339 53.487 1.00999.00 O ATOM 2585 C ILE 358 36.918 24.663 54.217 1.00999.00 C ATOM 2586 N ILE 359 36.462 24.026 55.290 1.00999.00 N ATOM 2587 CA ILE 359 35.044 24.040 55.622 1.00999.00 C ATOM 2588 CB ILE 359 34.431 22.628 55.542 1.00999.00 C ATOM 2589 CG1 ILE 359 32.918 22.691 55.760 1.00999.00 C ATOM 2590 CG2 ILE 359 35.109 21.697 56.534 1.00999.00 C ATOM 2591 CD1 ILE 359 32.195 21.418 55.380 1.00999.00 C ATOM 2592 O ILE 359 35.495 24.362 57.956 1.00999.00 O ATOM 2593 C ILE 359 34.763 24.620 57.001 1.00999.00 C ATOM 2594 N VAL 360 33.703 25.422 57.088 1.00999.00 N ATOM 2595 CA VAL 360 33.307 26.040 58.351 1.00999.00 C ATOM 2596 CB VAL 360 32.127 27.010 58.160 1.00999.00 C ATOM 2597 CG1 VAL 360 31.598 27.477 59.506 1.00999.00 C ATOM 2598 CG2 VAL 360 32.548 28.197 57.307 1.00999.00 C ATOM 2599 O VAL 360 33.345 25.044 60.538 1.00999.00 O ATOM 2600 C VAL 360 32.949 24.963 59.372 1.00999.00 C ATOM 2601 N ALA 361 32.245 23.930 58.913 1.00999.00 N ATOM 2602 CA ALA 361 31.857 22.826 59.781 1.00999.00 C ATOM 2603 CB ALA 361 30.513 23.109 60.432 1.00999.00 C ATOM 2604 O ALA 361 31.418 21.436 57.874 1.00999.00 O ATOM 2605 C ALA 361 31.788 21.494 59.050 1.00999.00 C ATOM 2606 N TRP 362 32.155 20.435 59.765 1.00999.00 N ATOM 2607 CA TRP 362 32.035 19.065 59.276 1.00999.00 C ATOM 2608 CB TRP 362 33.417 18.448 59.062 1.00999.00 C ATOM 2609 CG TRP 362 34.290 18.494 60.278 1.00999.00 C ATOM 2610 CD1 TRP 362 34.310 17.597 61.309 1.00999.00 C ATOM 2611 CD2 TRP 362 35.272 19.489 60.595 1.00999.00 C ATOM 2612 CE2 TRP 362 35.846 19.131 61.828 1.00999.00 C ATOM 2613 CE3 TRP 362 35.722 20.647 59.954 1.00999.00 C ATOM 2614 NE1 TRP 362 35.241 17.971 62.247 1.00999.00 N ATOM 2615 CZ2 TRP 362 36.845 19.889 62.436 1.00999.00 C ATOM 2616 CZ3 TRP 362 36.713 21.396 60.560 1.00999.00 C ATOM 2617 CH2 TRP 362 37.267 21.017 61.787 1.00999.00 H ATOM 2618 O TRP 362 31.298 17.025 60.344 1.00999.00 O ATOM 2619 C TRP 362 31.212 18.255 60.285 1.00999.00 C ATOM 2620 N ASN 363 30.420 18.968 61.083 1.00999.00 N ATOM 2621 CA ASN 363 29.520 18.347 62.055 1.00999.00 C ATOM 2622 CB ASN 363 29.100 19.360 63.121 1.00999.00 C ATOM 2623 CG ASN 363 28.238 18.741 64.204 1.00999.00 C ATOM 2624 ND2 ASN 363 28.237 19.359 65.380 1.00999.00 N ATOM 2625 OD1 ASN 363 27.584 17.723 63.984 1.00999.00 O ATOM 2626 O ASN 363 27.384 18.501 60.961 1.00999.00 O ATOM 2627 C ASN 363 28.334 17.782 61.277 1.00999.00 C ATOM 2628 N PRO 364 28.362 16.439 61.009 1.00999.00 N ATOM 2629 CA PRO 364 27.354 15.800 60.175 1.00999.00 C ATOM 2630 CB PRO 364 27.855 14.362 60.024 1.00999.00 C ATOM 2631 CG PRO 364 28.673 14.122 61.248 1.00999.00 C ATOM 2632 CD PRO 364 29.341 15.429 61.568 1.00999.00 C ATOM 2633 O PRO 364 24.991 15.494 60.025 1.00999.00 O ATOM 2634 C PRO 364 25.940 15.793 60.748 1.00999.00 C ATOM 2635 N ASN 365 25.792 16.126 62.029 1.00999.00 N ATOM 2636 CA ASN 365 24.461 16.161 62.638 1.00999.00 C ATOM 2637 CB ASN 365 24.570 16.293 64.159 1.00999.00 C ATOM 2638 CG ASN 365 25.059 15.019 64.819 1.00999.00 C ATOM 2639 ND2 ASN 365 25.599 15.151 66.026 1.00999.00 N ATOM 2640 OD1 ASN 365 24.954 13.933 64.251 1.00999.00 O ATOM 2641 O ASN 365 22.389 17.280 62.173 1.00999.00 O ATOM 2642 C ASN 365 23.615 17.295 62.064 1.00999.00 C ATOM 2643 N LEU 366 24.274 18.260 61.426 1.00999.00 N ATOM 2644 CA LEU 366 23.582 19.401 60.833 1.00999.00 C ATOM 2645 CB LEU 366 24.569 20.528 60.528 1.00999.00 C ATOM 2646 CG LEU 366 25.232 21.194 61.736 1.00999.00 C ATOM 2647 CD1 LEU 366 26.282 22.198 61.288 1.00999.00 C ATOM 2648 CD2 LEU 366 24.191 21.875 62.612 1.00999.00 C ATOM 2649 O LEU 366 21.946 19.845 59.150 1.00999.00 O ATOM 2650 C LEU 366 22.773 19.045 59.590 1.00999.00 C ATOM 2651 N TRP 367 23.062 17.880 58.993 1.00999.00 N ATOM 2652 CA TRP 367 22.435 17.486 57.730 1.00999.00 C ATOM 2653 CB TRP 367 23.039 16.181 57.207 1.00999.00 C ATOM 2654 CG TRP 367 24.446 16.326 56.714 1.00999.00 C ATOM 2655 CD1 TRP 367 25.577 15.851 57.313 1.00999.00 C ATOM 2656 CD2 TRP 367 24.872 16.994 55.520 1.00999.00 C ATOM 2657 CE2 TRP 367 26.273 16.882 55.459 1.00999.00 C ATOM 2658 CE3 TRP 367 24.205 17.674 54.496 1.00999.00 C ATOM 2659 NE1 TRP 367 26.682 16.180 56.567 1.00999.00 N ATOM 2660 CZ2 TRP 367 27.021 17.426 54.416 1.00999.00 C ATOM 2661 CZ3 TRP 367 24.951 18.209 53.463 1.00999.00 C ATOM 2662 CH2 TRP 367 26.345 18.084 53.429 1.00999.00 H ATOM 2663 O TRP 367 20.239 17.516 56.764 1.00999.00 O ATOM 2664 C TRP 367 20.920 17.305 57.767 1.00999.00 C ATOM 2665 N LYS 368 20.445 16.925 58.950 1.00999.00 N ATOM 2666 CA LYS 368 19.002 16.718 59.100 1.00999.00 C ATOM 2667 CB LYS 368 18.753 15.362 59.765 1.00999.00 C ATOM 2668 CG LYS 368 19.242 14.174 58.952 1.00999.00 C ATOM 2669 CD LYS 368 18.919 12.861 59.646 1.00999.00 C ATOM 2670 CE LYS 368 17.470 12.457 59.420 1.00999.00 C ATOM 2671 NZ LYS 368 17.189 12.178 57.984 1.00999.00 N ATOM 2672 O LYS 368 17.095 17.543 60.290 1.00999.00 O ATOM 2673 C LYS 368 18.225 17.779 59.860 1.00999.00 C ATOM 2674 N LYS 369 18.814 18.963 59.993 1.00999.00 N ATOM 2675 CA LYS 369 18.143 20.070 60.666 1.00999.00 C ATOM 2676 CB LYS 369 19.084 21.263 60.848 1.00999.00 C ATOM 2677 CG LYS 369 20.220 21.013 61.827 1.00999.00 C ATOM 2678 CD LYS 369 19.703 20.892 63.252 1.00999.00 C ATOM 2679 CE LYS 369 20.844 20.715 64.239 1.00999.00 C ATOM 2680 NZ LYS 369 20.351 20.542 65.634 1.00999.00 N ATOM 2681 O LYS 369 16.984 20.161 58.555 1.00999.00 O ATOM 2682 C LYS 369 16.957 20.416 59.763 1.00999.00 C ATOM 2683 N GLY 370 15.902 20.960 60.359 1.00999.00 N ATOM 2684 CA GLY 370 14.666 21.238 59.634 1.00999.00 C ATOM 2685 O GLY 370 15.477 23.228 58.548 1.00999.00 O ATOM 2686 C GLY 370 14.800 22.205 58.460 1.00999.00 C ATOM 2687 N THR 371 13.329 23.954 56.799 1.00999.00 N ATOM 2688 CA THR 371 12.366 24.990 57.175 1.00999.00 C ATOM 2689 CB THR 371 12.525 26.252 56.306 1.00999.00 C ATOM 2690 CG2 THR 371 11.511 27.310 56.713 1.00999.00 C ATOM 2691 OG1 THR 371 13.843 26.789 56.478 1.00999.00 O ATOM 2692 O THR 371 10.866 23.328 56.309 1.00999.00 O ATOM 2693 C THR 371 10.994 24.335 57.014 1.00999.00 C ATOM 2694 N ASN 372 9.964 24.903 57.632 1.00999.00 N ATOM 2695 CA ASN 372 8.637 24.320 57.485 1.00999.00 C ATOM 2696 CB ASN 372 7.667 24.940 58.492 1.00999.00 C ATOM 2697 CG ASN 372 7.930 24.483 59.913 1.00999.00 C ATOM 2698 ND2 ASN 372 7.464 25.265 60.880 1.00999.00 N ATOM 2699 OD1 ASN 372 8.545 23.441 60.136 1.00999.00 O ATOM 2700 O ASN 372 7.398 23.663 55.553 1.00999.00 O ATOM 2701 C ASN 372 8.060 24.547 56.088 1.00999.00 C ATOM 2702 N GLY 373 8.377 25.697 55.509 1.00999.00 N ATOM 2703 CA GLY 373 7.966 25.972 54.139 1.00999.00 C ATOM 2704 O GLY 373 8.452 24.902 52.043 1.00999.00 O ATOM 2705 C GLY 373 8.730 25.003 53.239 1.00999.00 C ATOM 2706 N TYR 374 9.969 24.122 53.158 1.00999.00 N ATOM 2707 CA TYR 374 10.754 23.116 52.462 1.00999.00 C ATOM 2708 CB TYR 374 10.549 23.296 50.877 1.00999.00 C ATOM 2709 CG TYR 374 9.232 23.880 50.442 1.00999.00 C ATOM 2710 CD1 TYR 374 8.047 23.188 50.641 1.00999.00 C ATOM 2711 CD2 TYR 374 9.157 25.143 49.877 1.00999.00 C ATOM 2712 CE1 TYR 374 6.811 23.737 50.262 1.00999.00 C ATOM 2713 CE2 TYR 374 7.940 25.698 49.507 1.00999.00 C ATOM 2714 CZ TYR 374 6.765 24.995 49.696 1.00999.00 C ATOM 2715 OH TYR 374 5.566 25.565 49.310 1.00999.00 H ATOM 2716 O TYR 374 13.027 22.585 51.974 1.00999.00 O ATOM 2717 C TYR 374 12.206 23.472 52.201 1.00999.00 C ATOM 2718 N PRO 375 12.541 24.756 52.288 1.00999.00 N ATOM 2719 CA PRO 375 13.900 25.209 52.003 1.00999.00 C ATOM 2720 CB PRO 375 13.858 26.712 52.292 1.00999.00 C ATOM 2721 CG PRO 375 12.426 27.089 52.099 1.00999.00 C ATOM 2722 CD PRO 375 11.618 25.930 52.613 1.00999.00 C ATOM 2723 O PRO 375 14.807 24.444 54.090 1.00999.00 O ATOM 2724 C PRO 375 14.951 24.524 52.871 1.00999.00 C ATOM 2725 N ILE 376 15.996 24.011 52.224 1.00999.00 N ATOM 2726 CA ILE 376 17.097 23.362 52.933 1.00999.00 C ATOM 2727 CB ILE 376 18.183 22.870 51.959 1.00999.00 C ATOM 2728 CG1 ILE 376 18.783 24.049 51.190 1.00999.00 C ATOM 2729 CG2 ILE 376 17.621 21.811 51.024 1.00999.00 C ATOM 2730 CD1 ILE 376 20.038 23.700 50.420 1.00999.00 C ATOM 2731 O ILE 376 17.754 25.528 53.742 1.00999.00 O ATOM 2732 C ILE 376 17.700 24.314 53.958 1.00999.00 C ATOM 2733 N PHE 377 18.135 23.776 55.105 1.00999.00 N ATOM 2734 CA PHE 377 18.730 24.621 56.142 1.00999.00 C ATOM 2735 CB PHE 377 18.917 23.829 57.437 1.00999.00 C ATOM 2736 CG PHE 377 19.465 24.644 58.573 1.00999.00 C ATOM 2737 CD1 PHE 377 18.643 25.494 59.292 1.00999.00 C ATOM 2738 CD2 PHE 377 20.803 24.563 58.921 1.00999.00 C ATOM 2739 CE1 PHE 377 19.148 26.244 60.339 1.00999.00 C ATOM 2740 CE2 PHE 377 21.305 25.312 59.965 1.00999.00 C ATOM 2741 CZ PHE 377 20.484 26.151 60.674 1.00999.00 C ATOM 2742 O PHE 377 20.834 24.508 54.986 1.00999.00 O ATOM 2743 C PHE 377 20.060 25.188 55.667 1.00999.00 C ATOM 2744 N GLN 378 20.313 26.441 56.024 1.00999.00 N ATOM 2745 CA GLN 378 21.576 27.086 55.706 1.00999.00 C ATOM 2746 CB GLN 378 21.354 28.565 55.381 1.00999.00 C ATOM 2747 CG GLN 378 20.465 28.808 54.174 1.00999.00 C ATOM 2748 CD GLN 378 21.076 28.290 52.886 1.00999.00 C ATOM 2749 OE1 GLN 378 22.195 28.657 52.528 1.00999.00 O ATOM 2750 NE2 GLN 378 20.341 27.433 52.186 1.00999.00 N ATOM 2751 O GLN 378 22.320 27.525 57.945 1.00999.00 O ATOM 2752 C GLN 378 22.503 26.898 56.903 1.00999.00 C ATOM 2753 N TRP 379 23.457 25.980 56.773 1.00999.00 N ATOM 2754 CA TRP 379 24.407 25.701 57.849 1.00999.00 C ATOM 2755 CB TRP 379 24.183 24.295 58.408 1.00999.00 C ATOM 2756 CG TRP 379 24.378 23.208 57.396 1.00999.00 C ATOM 2757 CD1 TRP 379 25.535 22.890 56.744 1.00999.00 C ATOM 2758 CD2 TRP 379 23.383 22.295 56.915 1.00999.00 C ATOM 2759 CE2 TRP 379 24.008 21.453 55.978 1.00999.00 C ATOM 2760 CE3 TRP 379 22.025 22.106 57.189 1.00999.00 C ATOM 2761 NE1 TRP 379 25.325 21.837 55.890 1.00999.00 N ATOM 2762 CZ2 TRP 379 23.324 20.439 55.311 1.00999.00 C ATOM 2763 CZ3 TRP 379 21.350 21.100 56.524 1.00999.00 C ATOM 2764 CH2 TRP 379 21.998 20.278 55.597 1.00999.00 H ATOM 2765 O TRP 379 26.053 26.112 56.154 1.00999.00 O ATOM 2766 C TRP 379 25.835 25.858 57.338 1.00999.00 C ATOM 2767 N SER 380 26.802 25.683 58.232 1.00999.00 N ATOM 2768 CA SER 380 28.210 25.807 57.876 1.00999.00 C ATOM 2769 CB SER 380 29.020 26.318 59.069 1.00999.00 C ATOM 2770 OG SER 380 29.034 25.369 60.120 1.00999.00 O ATOM 2771 O SER 380 30.010 24.502 56.981 1.00999.00 O ATOM 2772 C SER 380 28.843 24.508 57.382 1.00999.00 C ATOM 2773 N GLU 381 28.071 23.415 57.402 1.00999.00 N ATOM 2774 CA GLU 381 28.606 22.135 57.010 1.00999.00 C ATOM 2775 CB GLU 381 27.539 21.045 57.142 1.00999.00 C ATOM 2776 CG GLU 381 28.035 19.648 56.805 1.00999.00 C ATOM 2777 CD GLU 381 29.081 19.148 57.783 1.00999.00 C ATOM 2778 OE1 GLU 381 29.140 19.680 58.912 1.00999.00 O ATOM 2779 OE2 GLU 381 29.842 18.226 57.418 1.00999.00 O ATOM 2780 O GLU 381 30.163 21.584 55.325 1.00999.00 O ATOM 2781 C GLU 381 29.129 22.155 55.618 1.00999.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.43 36.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 90.55 22.7 22 100.0 22 ARMSMC SURFACE . . . . . . . . 88.18 34.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 70.07 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.59 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 80.15 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 76.64 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 80.55 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 61.53 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.98 54.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 82.83 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 71.85 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 78.64 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 1.83 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.62 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 49.92 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 18.07 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 58.62 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.84 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 82.84 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 82.84 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.52 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.52 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3072 CRMSCA SECONDARY STRUCTURE . . 8.43 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.60 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.13 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.46 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.35 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.56 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.87 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.73 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 10.65 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 8.99 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.78 119 99.2 120 CRMSSC BURIED . . . . . . . . 10.05 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.13 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 8.62 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.24 223 99.6 224 CRMSALL BURIED . . . . . . . . 9.23 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 990.295 0.983 0.983 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 991.221 0.985 0.985 11 100.0 11 ERRCA SURFACE . . . . . . . . 990.264 0.983 0.983 26 100.0 26 ERRCA BURIED . . . . . . . . 990.458 0.983 0.983 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 990.351 0.983 0.983 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 991.271 0.985 0.985 54 100.0 54 ERRMC SURFACE . . . . . . . . 990.293 0.983 0.983 129 100.0 129 ERRMC BURIED . . . . . . . . 990.676 0.983 0.984 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 989.253 0.981 0.981 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 989.301 0.981 0.981 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 990.589 0.983 0.983 41 100.0 41 ERRSC SURFACE . . . . . . . . 989.194 0.981 0.981 119 99.2 120 ERRSC BURIED . . . . . . . . 989.952 0.982 0.982 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 989.794 0.982 0.982 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 990.985 0.984 0.984 85 100.0 85 ERRALL SURFACE . . . . . . . . 989.704 0.982 0.982 223 99.6 224 ERRALL BURIED . . . . . . . . 990.459 0.983 0.983 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 7 19 31 31 DISTCA CA (P) 0.00 0.00 0.00 22.58 61.29 31 DISTCA CA (RMS) 0.00 0.00 0.00 3.95 6.49 DISTCA ALL (N) 0 1 3 47 157 253 254 DISTALL ALL (P) 0.00 0.39 1.18 18.50 61.81 254 DISTALL ALL (RMS) 0.00 1.77 2.22 3.99 6.88 DISTALL END of the results output