####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS096_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS096_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 351 - 366 4.59 19.69 LCS_AVERAGE: 47.87 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 372 - 379 1.91 26.36 LCS_AVERAGE: 18.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 366 - 370 0.96 21.44 LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.98 26.33 LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.94 25.24 LCS_AVERAGE: 13.22 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 16 0 3 3 3 3 8 8 9 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT A 352 A 352 3 4 16 3 3 3 4 7 8 8 9 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT E 353 E 353 3 4 16 3 3 3 4 4 5 6 9 11 12 13 14 15 16 16 17 18 18 18 18 LCS_GDT E 354 E 354 3 4 16 3 3 3 4 5 6 6 8 8 11 13 14 15 16 16 17 18 18 19 19 LCS_GDT L 355 L 355 3 4 16 3 3 4 4 5 6 6 8 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT G 356 G 356 3 4 16 0 3 3 4 7 8 8 9 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT N 357 N 357 3 4 16 3 3 3 5 6 7 8 9 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT I 358 I 358 3 4 16 3 3 3 4 7 8 8 9 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT I 359 I 359 4 5 16 3 4 4 5 6 7 8 9 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT V 360 V 360 4 5 16 3 4 4 5 5 5 7 7 9 10 11 12 13 16 16 17 18 18 19 19 LCS_GDT A 361 A 361 4 5 16 3 4 4 5 5 5 7 8 11 12 13 14 15 16 16 17 18 18 19 19 LCS_GDT W 362 W 362 4 5 16 3 4 4 5 7 8 8 11 12 13 13 14 15 16 16 17 18 18 19 19 LCS_GDT N 363 N 363 4 5 16 3 4 4 5 7 8 10 11 12 13 13 14 15 16 16 17 18 18 19 19 LCS_GDT P 364 P 364 4 4 16 3 4 4 5 7 8 9 11 12 13 13 14 15 16 16 17 18 18 19 19 LCS_GDT N 365 N 365 4 6 16 3 4 4 6 7 8 10 11 12 13 13 14 15 16 16 17 18 18 19 19 LCS_GDT L 366 L 366 5 7 16 3 3 5 6 6 8 10 11 12 13 13 14 15 16 16 17 18 18 19 19 LCS_GDT W 367 W 367 5 7 15 3 3 5 6 6 8 10 11 12 13 13 13 14 14 16 17 18 18 18 19 LCS_GDT K 368 K 368 5 7 15 3 3 5 6 6 8 10 11 12 13 13 13 14 14 14 16 18 18 18 19 LCS_GDT K 369 K 369 5 7 15 3 3 5 6 6 8 10 11 12 13 13 13 14 14 14 14 15 17 18 19 LCS_GDT G 370 G 370 5 7 15 3 3 5 6 6 8 10 11 12 13 13 13 14 14 14 14 15 17 18 19 LCS_GDT T 371 T 371 4 7 15 4 4 5 6 6 8 10 11 12 13 13 13 14 14 14 14 15 17 18 19 LCS_GDT N 372 N 372 5 8 15 4 4 5 6 7 8 10 11 12 13 13 13 14 14 14 14 15 17 18 19 LCS_GDT G 373 G 373 5 8 15 4 4 5 6 7 8 10 11 12 13 13 13 14 14 14 14 15 17 18 19 LCS_GDT Y 374 Y 374 5 8 15 4 5 5 6 7 8 10 11 12 13 13 13 14 14 14 14 15 17 18 19 LCS_GDT P 375 P 375 5 8 15 4 5 5 6 7 8 8 8 9 9 9 9 10 10 14 14 15 17 18 19 LCS_GDT I 376 I 376 5 8 14 4 4 5 6 7 8 8 8 9 9 9 10 12 12 14 14 15 17 18 19 LCS_GDT F 377 F 377 5 8 11 3 5 5 6 7 8 8 8 9 9 9 9 10 10 11 11 15 17 18 19 LCS_GDT Q 378 Q 378 4 8 11 3 5 5 5 7 8 8 8 9 9 9 9 10 10 11 13 15 17 19 19 LCS_GDT W 379 W 379 4 8 11 3 5 5 5 6 8 8 8 9 9 9 9 10 12 13 15 17 17 19 19 LCS_GDT S 380 S 380 4 4 11 3 4 4 4 4 4 7 7 8 8 9 9 10 10 11 12 17 17 19 19 LCS_GDT E 381 E 381 4 4 11 3 4 4 4 5 5 7 7 8 8 9 9 10 10 11 15 17 17 19 19 LCS_AVERAGE LCS_A: 26.60 ( 13.22 18.73 47.87 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 8 10 11 12 13 13 14 15 16 16 17 18 18 19 19 GDT PERCENT_AT 12.90 16.13 16.13 19.35 22.58 25.81 32.26 35.48 38.71 41.94 41.94 45.16 48.39 51.61 51.61 54.84 58.06 58.06 61.29 61.29 GDT RMS_LOCAL 0.25 0.84 0.84 1.23 1.68 1.91 2.49 2.70 2.99 3.23 3.23 3.91 4.22 4.59 4.76 5.03 5.49 5.49 6.87 6.87 GDT RMS_ALL_AT 24.80 25.18 25.18 21.28 26.61 26.36 19.93 20.20 19.89 19.51 19.51 19.97 20.09 19.69 18.97 18.59 18.08 18.08 14.98 14.98 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 40.738 0 0.650 0.897 42.386 0.000 0.000 LGA A 352 A 352 37.224 0 0.559 0.534 38.568 0.000 0.000 LGA E 353 E 353 38.241 0 0.104 0.917 42.795 0.000 0.000 LGA E 354 E 354 34.554 0 0.518 1.588 37.143 0.000 0.000 LGA L 355 L 355 27.893 0 0.630 1.048 30.669 0.000 0.000 LGA G 356 G 356 24.525 0 0.578 0.578 25.765 0.000 0.000 LGA N 357 N 357 24.526 0 0.580 0.595 29.831 0.000 0.000 LGA I 358 I 358 20.190 0 0.136 0.649 25.186 0.000 0.000 LGA I 359 I 359 16.746 0 0.574 0.584 21.691 0.000 0.000 LGA V 360 V 360 14.960 0 0.040 1.023 17.998 0.000 0.000 LGA A 361 A 361 11.287 0 0.048 0.079 13.059 4.048 3.238 LGA W 362 W 362 6.727 0 0.592 1.238 16.115 27.619 8.639 LGA N 363 N 363 2.950 0 0.190 1.348 6.784 42.262 33.631 LGA P 364 P 364 5.744 0 0.642 0.561 8.992 29.048 19.592 LGA N 365 N 365 2.319 0 0.509 0.874 6.551 70.952 47.976 LGA L 366 L 366 1.518 0 0.288 1.323 6.081 77.262 62.262 LGA W 367 W 367 2.277 0 0.225 1.174 10.065 64.881 28.912 LGA K 368 K 368 3.244 0 0.671 1.162 6.464 47.738 41.852 LGA K 369 K 369 2.609 0 0.277 1.105 6.988 62.976 42.063 LGA G 370 G 370 2.053 0 0.553 0.553 2.848 67.024 67.024 LGA T 371 T 371 3.283 0 0.241 1.034 6.455 57.262 42.109 LGA N 372 N 372 1.878 0 0.639 0.978 2.984 70.952 65.000 LGA G 373 G 373 2.942 0 0.018 0.018 4.251 52.262 52.262 LGA Y 374 Y 374 3.763 0 0.089 1.201 8.936 28.452 30.833 LGA P 375 P 375 10.182 0 0.125 0.308 11.486 2.143 2.245 LGA I 376 I 376 13.597 0 0.337 1.110 16.545 0.000 0.000 LGA F 377 F 377 19.573 0 0.612 0.704 22.474 0.000 0.000 LGA Q 378 Q 378 22.586 0 0.352 1.026 26.770 0.000 0.000 LGA W 379 W 379 27.362 0 0.543 1.288 29.949 0.000 0.000 LGA S 380 S 380 27.479 0 0.167 0.243 31.262 0.000 0.000 LGA E 381 E 381 32.831 0 0.081 1.419 34.849 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 11.752 11.790 12.095 22.738 17.666 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.70 31.452 28.721 0.393 LGA_LOCAL RMSD: 2.701 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 20.196 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 11.752 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.532180 * X + 0.568362 * Y + 0.627494 * Z + -22.669291 Y_new = 0.476179 * X + -0.411884 * Y + 0.776920 * Z + -21.465357 Z_new = 0.700027 * X + 0.712261 * Y + -0.051445 * Z + -48.093105 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.411675 -0.775435 1.642899 [DEG: 138.1788 -44.4292 94.1312 ] ZXZ: 2.462193 1.622264 0.776736 [DEG: 141.0733 92.9489 44.5037 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS096_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS096_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.70 28.721 11.75 REMARK ---------------------------------------------------------- MOLECULE T0537TS096_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2pyh_B 2qy1_A 1bhe_A 1ru4_A 2odl_A ATOM 2529 N SER 351 43.048 17.655 42.835 1.00 0.00 N ATOM 2530 CA SER 351 44.363 18.193 43.084 1.00 0.00 C ATOM 2531 CB SER 351 44.522 19.612 42.528 1.00 0.00 C ATOM 2532 OG SER 351 44.343 19.590 41.122 1.00 0.00 O ATOM 2533 C SER 351 44.527 18.288 44.576 1.00 0.00 C ATOM 2534 O SER 351 45.644 18.356 45.090 1.00 0.00 O ATOM 2535 N ALA 352 43.376 18.223 45.279 1.00 0.00 N ATOM 2536 CA ALA 352 43.136 18.256 46.704 1.00 0.00 C ATOM 2537 CB ALA 352 43.523 16.936 47.398 1.00 0.00 C ATOM 2538 C ALA 352 43.711 19.363 47.545 1.00 0.00 C ATOM 2539 O ALA 352 44.833 19.247 48.018 1.00 0.00 O ATOM 2540 N GLU 353 43.008 20.514 47.716 1.00 0.00 N ATOM 2541 CA GLU 353 43.490 21.404 48.752 1.00 0.00 C ATOM 2542 CB GLU 353 42.786 22.772 48.762 1.00 0.00 C ATOM 2543 CG GLU 353 43.217 23.644 47.581 1.00 0.00 C ATOM 2544 CD GLU 353 42.368 24.907 47.522 1.00 0.00 C ATOM 2545 OE1 GLU 353 41.446 25.065 48.366 1.00 0.00 O ATOM 2546 OE2 GLU 353 42.638 25.736 46.613 1.00 0.00 O ATOM 2547 C GLU 353 43.228 20.710 50.059 1.00 0.00 C ATOM 2548 O GLU 353 44.147 20.394 50.815 1.00 0.00 O ATOM 2549 N GLU 354 41.933 20.438 50.335 1.00 0.00 N ATOM 2550 CA GLU 354 41.494 19.568 51.387 1.00 0.00 C ATOM 2551 CB GLU 354 42.152 19.726 52.760 1.00 0.00 C ATOM 2552 CG GLU 354 41.482 18.835 53.815 1.00 0.00 C ATOM 2553 CD GLU 354 41.046 17.483 53.225 1.00 0.00 C ATOM 2554 OE1 GLU 354 41.647 16.982 52.236 1.00 0.00 O ATOM 2555 OE2 GLU 354 40.063 16.927 53.786 1.00 0.00 O ATOM 2556 C GLU 354 40.020 19.681 51.538 1.00 0.00 C ATOM 2557 O GLU 354 39.507 20.228 52.514 1.00 0.00 O ATOM 2558 N LEU 355 39.293 19.116 50.562 1.00 0.00 N ATOM 2559 CA LEU 355 37.875 19.108 50.676 1.00 0.00 C ATOM 2560 CB LEU 355 37.126 20.054 49.726 1.00 0.00 C ATOM 2561 CG LEU 355 37.295 21.524 50.166 1.00 0.00 C ATOM 2562 CD1 LEU 355 38.746 22.003 49.990 1.00 0.00 C ATOM 2563 CD2 LEU 355 36.265 22.452 49.506 1.00 0.00 C ATOM 2564 C LEU 355 37.428 17.699 50.535 1.00 0.00 C ATOM 2565 O LEU 355 38.041 16.888 49.840 1.00 0.00 O ATOM 2566 N GLY 356 36.300 17.410 51.194 1.00 0.00 N ATOM 2567 CA GLY 356 35.808 16.086 51.403 1.00 0.00 C ATOM 2568 C GLY 356 35.582 15.355 50.125 1.00 0.00 C ATOM 2569 O GLY 356 35.390 15.930 49.055 1.00 0.00 O ATOM 2570 N ASN 357 35.598 14.017 50.244 1.00 0.00 N ATOM 2571 CA ASN 357 35.459 13.146 49.127 1.00 0.00 C ATOM 2572 CB ASN 357 35.993 11.733 49.413 1.00 0.00 C ATOM 2573 CG ASN 357 37.469 11.908 49.746 1.00 0.00 C ATOM 2574 OD1 ASN 357 38.127 12.807 49.221 1.00 0.00 O ATOM 2575 ND2 ASN 357 38.006 11.051 50.652 1.00 0.00 N ATOM 2576 C ASN 357 34.022 13.045 48.730 1.00 0.00 C ATOM 2577 O ASN 357 33.098 13.134 49.536 1.00 0.00 O ATOM 2578 N ILE 358 33.864 12.771 47.432 1.00 0.00 N ATOM 2579 CA ILE 358 32.724 12.682 46.575 1.00 0.00 C ATOM 2580 CB ILE 358 33.122 12.191 45.227 1.00 0.00 C ATOM 2581 CG2 ILE 358 31.896 12.285 44.307 1.00 0.00 C ATOM 2582 CG1 ILE 358 34.325 12.977 44.715 1.00 0.00 C ATOM 2583 CD1 ILE 358 35.681 12.568 45.299 1.00 0.00 C ATOM 2584 C ILE 358 31.779 11.637 47.057 1.00 0.00 C ATOM 2585 O ILE 358 30.602 11.696 46.709 1.00 0.00 O ATOM 2586 N ILE 359 32.316 10.614 47.756 1.00 0.00 N ATOM 2587 CA ILE 359 31.629 9.439 48.231 1.00 0.00 C ATOM 2588 CB ILE 359 32.254 8.891 49.478 1.00 0.00 C ATOM 2589 CG2 ILE 359 31.284 7.883 50.100 1.00 0.00 C ATOM 2590 CG1 ILE 359 33.653 8.339 49.177 1.00 0.00 C ATOM 2591 CD1 ILE 359 34.462 8.015 50.430 1.00 0.00 C ATOM 2592 C ILE 359 30.186 9.722 48.543 1.00 0.00 C ATOM 2593 O ILE 359 29.852 10.577 49.357 1.00 0.00 O ATOM 2594 N VAL 360 29.298 8.941 47.901 1.00 0.00 N ATOM 2595 CA VAL 360 27.872 9.115 47.907 1.00 0.00 C ATOM 2596 CB VAL 360 27.203 8.283 46.850 1.00 0.00 C ATOM 2597 CG1 VAL 360 27.394 6.793 47.177 1.00 0.00 C ATOM 2598 CG2 VAL 360 25.737 8.724 46.744 1.00 0.00 C ATOM 2599 C VAL 360 27.164 8.870 49.220 1.00 0.00 C ATOM 2600 O VAL 360 26.248 9.609 49.570 1.00 0.00 O ATOM 2601 N ALA 361 27.595 7.871 50.002 1.00 0.00 N ATOM 2602 CA ALA 361 26.932 7.332 51.169 1.00 0.00 C ATOM 2603 CB ALA 361 27.691 6.140 51.776 1.00 0.00 C ATOM 2604 C ALA 361 26.703 8.324 52.278 1.00 0.00 C ATOM 2605 O ALA 361 25.956 8.021 53.203 1.00 0.00 O ATOM 2606 N TRP 362 27.399 9.472 52.285 1.00 0.00 N ATOM 2607 CA TRP 362 27.408 10.417 53.374 1.00 0.00 C ATOM 2608 CB TRP 362 27.965 11.802 52.993 1.00 0.00 C ATOM 2609 CG TRP 362 29.396 11.841 52.524 1.00 0.00 C ATOM 2610 CD2 TRP 362 30.496 11.227 53.209 1.00 0.00 C ATOM 2611 CD1 TRP 362 29.913 12.405 51.391 1.00 0.00 C ATOM 2612 NE1 TRP 362 31.268 12.189 51.338 1.00 0.00 N ATOM 2613 CE2 TRP 362 31.641 11.460 52.448 1.00 0.00 C ATOM 2614 CE3 TRP 362 30.544 10.518 54.378 1.00 0.00 C ATOM 2615 CZ2 TRP 362 32.858 10.987 52.845 1.00 0.00 C ATOM 2616 CZ3 TRP 362 31.775 10.048 54.779 1.00 0.00 C ATOM 2617 CH2 TRP 362 32.909 10.279 54.027 1.00 0.00 H ATOM 2618 C TRP 362 26.084 10.715 54.010 1.00 0.00 C ATOM 2619 O TRP 362 25.140 11.192 53.378 1.00 0.00 O ATOM 2620 N ASN 363 26.008 10.439 55.332 1.00 0.00 N ATOM 2621 CA ASN 363 24.908 10.946 56.092 1.00 0.00 C ATOM 2622 CB ASN 363 24.110 9.850 56.818 1.00 0.00 C ATOM 2623 CG ASN 363 23.303 9.088 55.771 1.00 0.00 C ATOM 2624 OD1 ASN 363 23.444 7.880 55.599 1.00 0.00 O ATOM 2625 ND2 ASN 363 22.423 9.829 55.048 1.00 0.00 N ATOM 2626 C ASN 363 25.450 11.893 57.145 1.00 0.00 C ATOM 2627 O ASN 363 25.164 11.661 58.320 1.00 0.00 O ATOM 2628 N PRO 364 26.201 12.954 56.860 1.00 0.00 N ATOM 2629 CA PRO 364 26.530 13.853 57.933 1.00 0.00 C ATOM 2630 CD PRO 364 27.226 12.987 55.820 1.00 0.00 C ATOM 2631 CB PRO 364 27.638 14.766 57.417 1.00 0.00 C ATOM 2632 CG PRO 364 28.336 13.911 56.345 1.00 0.00 C ATOM 2633 C PRO 364 25.265 14.563 58.280 1.00 0.00 C ATOM 2634 O PRO 364 24.783 15.328 57.450 1.00 0.00 O ATOM 2635 N ASN 365 24.759 14.425 59.515 1.00 0.00 N ATOM 2636 CA ASN 365 23.457 14.971 59.771 1.00 0.00 C ATOM 2637 CB ASN 365 22.657 14.155 60.800 1.00 0.00 C ATOM 2638 CG ASN 365 21.218 14.639 60.731 1.00 0.00 C ATOM 2639 OD1 ASN 365 20.874 15.427 59.851 1.00 0.00 O ATOM 2640 ND2 ASN 365 20.360 14.168 61.674 1.00 0.00 N ATOM 2641 C ASN 365 23.536 16.377 60.295 1.00 0.00 C ATOM 2642 O ASN 365 23.578 16.606 61.501 1.00 0.00 O ATOM 2643 N LEU 366 23.598 17.346 59.362 1.00 0.00 N ATOM 2644 CA LEU 366 23.542 18.773 59.554 1.00 0.00 C ATOM 2645 CB LEU 366 24.249 19.640 58.497 1.00 0.00 C ATOM 2646 CG LEU 366 25.769 19.724 58.711 1.00 0.00 C ATOM 2647 CD1 LEU 366 26.391 20.869 57.900 1.00 0.00 C ATOM 2648 CD2 LEU 366 26.111 19.817 60.205 1.00 0.00 C ATOM 2649 C LEU 366 22.143 19.286 59.673 1.00 0.00 C ATOM 2650 O LEU 366 21.949 20.501 59.700 1.00 0.00 O ATOM 2651 N TRP 367 21.133 18.403 59.559 1.00 0.00 N ATOM 2652 CA TRP 367 19.749 18.797 59.518 1.00 0.00 C ATOM 2653 CB TRP 367 18.834 17.567 59.638 1.00 0.00 C ATOM 2654 CG TRP 367 17.352 17.791 59.770 1.00 0.00 C ATOM 2655 CD2 TRP 367 16.550 18.557 58.850 1.00 0.00 C ATOM 2656 CD1 TRP 367 16.514 17.366 60.756 1.00 0.00 C ATOM 2657 NE1 TRP 367 15.229 17.770 60.486 1.00 0.00 N ATOM 2658 CE2 TRP 367 15.240 18.513 59.327 1.00 0.00 C ATOM 2659 CE3 TRP 367 16.882 19.233 57.718 1.00 0.00 C ATOM 2660 CZ2 TRP 367 14.231 19.151 58.655 1.00 0.00 C ATOM 2661 CZ3 TRP 367 15.861 19.878 57.050 1.00 0.00 C ATOM 2662 CH2 TRP 367 14.561 19.836 57.508 1.00 0.00 H ATOM 2663 C TRP 367 19.424 19.851 60.535 1.00 0.00 C ATOM 2664 O TRP 367 19.191 19.599 61.715 1.00 0.00 O ATOM 2665 N LYS 368 19.391 21.093 60.024 1.00 0.00 N ATOM 2666 CA LYS 368 19.109 22.329 60.690 1.00 0.00 C ATOM 2667 CB LYS 368 19.553 23.540 59.863 1.00 0.00 C ATOM 2668 CG LYS 368 21.076 23.642 59.808 1.00 0.00 C ATOM 2669 CD LYS 368 21.590 24.638 58.772 1.00 0.00 C ATOM 2670 CE LYS 368 23.089 24.908 58.892 1.00 0.00 C ATOM 2671 NZ LYS 368 23.852 23.774 58.336 1.00 0.00 N ATOM 2672 C LYS 368 17.659 22.425 60.954 1.00 0.00 C ATOM 2673 O LYS 368 17.219 23.276 61.724 1.00 0.00 O ATOM 2674 N LYS 369 16.865 21.600 60.254 1.00 0.00 N ATOM 2675 CA LYS 369 15.456 21.746 60.356 1.00 0.00 C ATOM 2676 CB LYS 369 14.869 21.867 61.777 1.00 0.00 C ATOM 2677 CG LYS 369 14.808 20.540 62.538 1.00 0.00 C ATOM 2678 CD LYS 369 14.224 20.667 63.946 1.00 0.00 C ATOM 2679 CE LYS 369 12.724 20.361 63.983 1.00 0.00 C ATOM 2680 NZ LYS 369 11.993 21.294 63.096 1.00 0.00 N ATOM 2681 C LYS 369 15.170 22.990 59.579 1.00 0.00 C ATOM 2682 O LYS 369 15.734 23.251 58.525 1.00 0.00 O ATOM 2683 N GLY 370 14.292 23.837 60.085 1.00 0.00 N ATOM 2684 CA GLY 370 13.882 24.964 59.305 1.00 0.00 C ATOM 2685 C GLY 370 12.465 24.626 58.969 1.00 0.00 C ATOM 2686 O GLY 370 11.549 25.424 59.164 1.00 0.00 O ATOM 2687 N THR 371 12.287 23.375 58.500 1.00 0.00 N ATOM 2688 CA THR 371 11.035 22.700 58.275 1.00 0.00 C ATOM 2689 CB THR 371 10.311 22.502 59.583 1.00 0.00 C ATOM 2690 OG1 THR 371 11.201 21.889 60.505 1.00 0.00 O ATOM 2691 CG2 THR 371 9.116 21.558 59.394 1.00 0.00 C ATOM 2692 C THR 371 10.169 23.377 57.241 1.00 0.00 C ATOM 2693 O THR 371 8.980 23.092 57.154 1.00 0.00 O ATOM 2694 N ASN 372 10.761 24.195 56.351 1.00 0.00 N ATOM 2695 CA ASN 372 10.074 24.926 55.306 1.00 0.00 C ATOM 2696 CB ASN 372 11.080 25.442 54.275 1.00 0.00 C ATOM 2697 CG ASN 372 12.219 26.017 55.098 1.00 0.00 C ATOM 2698 OD1 ASN 372 13.292 25.419 55.188 1.00 0.00 O ATOM 2699 ND2 ASN 372 11.972 27.183 55.747 1.00 0.00 N ATOM 2700 C ASN 372 9.214 23.922 54.601 1.00 0.00 C ATOM 2701 O ASN 372 9.659 22.803 54.394 1.00 0.00 O ATOM 2702 N GLY 373 8.040 24.332 54.096 1.00 0.00 N ATOM 2703 CA GLY 373 6.910 23.504 53.748 1.00 0.00 C ATOM 2704 C GLY 373 7.222 22.266 52.957 1.00 0.00 C ATOM 2705 O GLY 373 6.403 21.360 52.966 1.00 0.00 O ATOM 2706 N TYR 374 8.336 22.204 52.209 1.00 0.00 N ATOM 2707 CA TYR 374 8.789 21.132 51.346 1.00 0.00 C ATOM 2708 CB TYR 374 9.876 20.193 51.915 1.00 0.00 C ATOM 2709 CG TYR 374 11.060 20.852 52.534 1.00 0.00 C ATOM 2710 CD1 TYR 374 11.824 21.782 51.869 1.00 0.00 C ATOM 2711 CD2 TYR 374 11.379 20.545 53.839 1.00 0.00 C ATOM 2712 CE1 TYR 374 12.913 22.355 52.488 1.00 0.00 C ATOM 2713 CE2 TYR 374 12.463 21.109 54.463 1.00 0.00 C ATOM 2714 CZ TYR 374 13.237 22.015 53.779 1.00 0.00 C ATOM 2715 OH TYR 374 14.354 22.598 54.412 1.00 0.00 H ATOM 2716 C TYR 374 7.745 20.132 50.938 1.00 0.00 C ATOM 2717 O TYR 374 7.254 19.333 51.734 1.00 0.00 O ATOM 2718 N PRO 375 7.431 20.131 49.675 1.00 0.00 N ATOM 2719 CA PRO 375 6.659 19.045 49.139 1.00 0.00 C ATOM 2720 CD PRO 375 7.180 21.374 48.965 1.00 0.00 C ATOM 2721 CB PRO 375 5.986 19.580 47.871 1.00 0.00 C ATOM 2722 CG PRO 375 6.690 20.921 47.582 1.00 0.00 C ATOM 2723 C PRO 375 7.698 17.985 48.903 1.00 0.00 C ATOM 2724 O PRO 375 8.853 18.352 48.684 1.00 0.00 O ATOM 2725 N ILE 376 7.350 16.684 48.973 1.00 0.00 N ATOM 2726 CA ILE 376 8.342 15.673 48.751 1.00 0.00 C ATOM 2727 CB ILE 376 8.545 14.838 49.976 1.00 0.00 C ATOM 2728 CG2 ILE 376 9.539 13.712 49.649 1.00 0.00 C ATOM 2729 CG1 ILE 376 8.989 15.756 51.126 1.00 0.00 C ATOM 2730 CD1 ILE 376 8.935 15.102 52.506 1.00 0.00 C ATOM 2731 C ILE 376 7.821 14.796 47.657 1.00 0.00 C ATOM 2732 O ILE 376 7.014 13.900 47.890 1.00 0.00 O ATOM 2733 N PHE 377 8.324 15.008 46.433 1.00 0.00 N ATOM 2734 CA PHE 377 7.809 14.359 45.260 1.00 0.00 C ATOM 2735 CB PHE 377 8.435 14.958 43.991 1.00 0.00 C ATOM 2736 CG PHE 377 8.195 16.431 44.086 1.00 0.00 C ATOM 2737 CD1 PHE 377 7.001 16.986 43.685 1.00 0.00 C ATOM 2738 CD2 PHE 377 9.164 17.258 44.608 1.00 0.00 C ATOM 2739 CE1 PHE 377 6.788 18.342 43.785 1.00 0.00 C ATOM 2740 CE2 PHE 377 8.960 18.613 44.711 1.00 0.00 C ATOM 2741 CZ PHE 377 7.770 19.160 44.296 1.00 0.00 C ATOM 2742 C PHE 377 8.071 12.876 45.294 1.00 0.00 C ATOM 2743 O PHE 377 7.209 12.084 44.918 1.00 0.00 O ATOM 2744 N GLN 378 9.270 12.454 45.734 1.00 0.00 N ATOM 2745 CA GLN 378 9.623 11.058 45.775 1.00 0.00 C ATOM 2746 CB GLN 378 8.860 10.241 46.839 1.00 0.00 C ATOM 2747 CG GLN 378 9.357 10.435 48.278 1.00 0.00 C ATOM 2748 CD GLN 378 10.511 9.463 48.522 1.00 0.00 C ATOM 2749 OE1 GLN 378 11.324 9.228 47.632 1.00 0.00 O ATOM 2750 NE2 GLN 378 10.580 8.873 49.743 1.00 0.00 N ATOM 2751 C GLN 378 9.434 10.421 44.432 1.00 0.00 C ATOM 2752 O GLN 378 8.944 9.296 44.346 1.00 0.00 O ATOM 2753 N TRP 379 9.841 11.108 43.341 1.00 0.00 N ATOM 2754 CA TRP 379 9.678 10.524 42.038 1.00 0.00 C ATOM 2755 CB TRP 379 9.842 11.497 40.852 1.00 0.00 C ATOM 2756 CG TRP 379 8.780 12.561 40.717 1.00 0.00 C ATOM 2757 CD2 TRP 379 7.420 12.308 40.316 1.00 0.00 C ATOM 2758 CD1 TRP 379 8.872 13.897 40.952 1.00 0.00 C ATOM 2759 NE1 TRP 379 7.661 14.503 40.716 1.00 0.00 N ATOM 2760 CE2 TRP 379 6.760 13.536 40.332 1.00 0.00 C ATOM 2761 CE3 TRP 379 6.780 11.157 39.971 1.00 0.00 C ATOM 2762 CZ2 TRP 379 5.434 13.627 39.995 1.00 0.00 C ATOM 2763 CZ3 TRP 379 5.447 11.250 39.639 1.00 0.00 C ATOM 2764 CH2 TRP 379 4.787 12.461 39.652 1.00 0.00 H ATOM 2765 C TRP 379 10.723 9.479 41.813 1.00 0.00 C ATOM 2766 O TRP 379 11.912 9.773 41.707 1.00 0.00 O ATOM 2767 N SER 380 10.275 8.215 41.723 1.00 0.00 N ATOM 2768 CA SER 380 11.115 7.119 41.339 1.00 0.00 C ATOM 2769 CB SER 380 11.174 5.981 42.376 1.00 0.00 C ATOM 2770 OG SER 380 11.836 6.412 43.558 1.00 0.00 O ATOM 2771 C SER 380 10.453 6.558 40.120 1.00 0.00 C ATOM 2772 O SER 380 9.463 5.834 40.221 1.00 0.00 O ATOM 2773 N GLU 381 10.978 6.888 38.925 1.00 0.00 N ATOM 2774 CA GLU 381 10.364 6.381 37.734 1.00 0.00 C ATOM 2775 CB GLU 381 9.350 7.337 37.072 1.00 0.00 C ATOM 2776 CG GLU 381 9.936 8.629 36.494 1.00 0.00 C ATOM 2777 CD GLU 381 9.910 9.715 37.558 1.00 0.00 C ATOM 2778 OE1 GLU 381 8.787 10.061 38.010 1.00 0.00 O ATOM 2779 OE2 GLU 381 11.005 10.220 37.925 1.00 0.00 O ATOM 2780 C GLU 381 11.474 6.120 36.720 1.00 0.00 C ATOM 2781 O GLU 381 12.195 7.088 36.356 1.00 0.00 O ATOM 2782 OXT GLU 381 11.614 4.943 36.296 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.33 35.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 95.65 50.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 92.73 32.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 101.96 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.01 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 85.16 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 67.64 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 88.44 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 64.40 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.70 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 84.39 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 90.72 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 91.96 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 44.50 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.52 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 53.14 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 23.67 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 48.52 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 112.41 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 112.41 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 112.41 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.75 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.75 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3791 CRMSCA SECONDARY STRUCTURE . . 9.23 11 100.0 11 CRMSCA SURFACE . . . . . . . . 11.92 26 100.0 26 CRMSCA BURIED . . . . . . . . 10.85 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.86 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 9.23 54 100.0 54 CRMSMC SURFACE . . . . . . . . 12.06 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.69 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.58 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 12.87 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.44 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.57 120 100.0 120 CRMSSC BURIED . . . . . . . . 12.75 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.21 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 9.25 85 100.0 85 CRMSALL SURFACE . . . . . . . . 12.33 224 100.0 224 CRMSALL BURIED . . . . . . . . 11.26 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.051 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 8.357 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 11.175 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 10.403 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.113 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 8.290 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 11.310 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 10.013 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.735 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 12.054 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 9.016 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.709 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 12.044 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.404 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 8.544 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 11.519 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 10.547 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 3 12 31 31 DISTCA CA (P) 0.00 0.00 3.23 9.68 38.71 31 DISTCA CA (RMS) 0.00 0.00 2.29 3.45 7.34 DISTCA ALL (N) 0 2 7 20 105 254 254 DISTALL ALL (P) 0.00 0.79 2.76 7.87 41.34 254 DISTALL ALL (RMS) 0.00 1.71 2.28 3.68 7.47 DISTALL END of the results output