####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS088_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS088_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 360 - 375 4.98 13.05 LCS_AVERAGE: 46.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 362 - 368 1.47 18.27 LONGEST_CONTINUOUS_SEGMENT: 7 371 - 377 1.80 14.54 LCS_AVERAGE: 18.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 351 - 356 0.33 23.08 LONGEST_CONTINUOUS_SEGMENT: 6 362 - 367 0.75 17.55 LCS_AVERAGE: 15.30 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 6 6 13 5 6 6 6 6 6 6 8 9 10 10 14 14 17 18 19 19 22 24 24 LCS_GDT A 352 A 352 6 6 13 5 6 6 6 6 6 6 8 9 11 11 14 15 17 18 19 19 22 24 24 LCS_GDT E 353 E 353 6 6 13 5 6 6 6 6 6 6 8 9 11 11 14 15 17 18 19 19 22 24 24 LCS_GDT E 354 E 354 6 6 13 5 6 6 6 6 6 6 7 8 10 11 14 14 15 18 19 19 22 24 24 LCS_GDT L 355 L 355 6 6 13 5 6 6 6 6 6 7 9 9 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT G 356 G 356 6 6 13 5 6 6 6 6 6 7 9 9 10 12 14 15 17 18 19 19 21 23 23 LCS_GDT N 357 N 357 3 4 13 3 3 3 4 6 6 7 9 9 10 12 14 15 17 18 19 19 21 24 24 LCS_GDT I 358 I 358 3 4 13 3 3 3 4 6 6 6 9 9 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT I 359 I 359 3 4 13 4 5 5 5 5 6 10 11 11 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT V 360 V 360 3 3 16 3 3 3 3 6 8 10 11 11 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT A 361 A 361 3 3 16 0 3 3 3 4 5 7 9 10 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT W 362 W 362 6 7 16 3 6 6 6 6 7 8 9 10 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT N 363 N 363 6 7 16 4 6 6 6 6 7 8 9 10 11 12 13 15 17 17 19 19 22 24 24 LCS_GDT P 364 P 364 6 7 16 4 6 6 6 6 7 8 8 10 11 12 13 15 17 17 19 19 22 24 24 LCS_GDT N 365 N 365 6 7 16 4 6 6 6 6 7 8 9 10 11 12 13 15 17 17 19 19 22 24 24 LCS_GDT L 366 L 366 6 7 16 4 6 6 6 6 7 8 9 10 11 12 13 15 17 17 19 19 22 24 24 LCS_GDT W 367 W 367 6 7 16 3 6 6 6 6 7 8 8 10 11 12 13 15 17 17 19 19 22 24 24 LCS_GDT K 368 K 368 4 7 16 3 4 4 5 6 7 8 8 10 11 11 13 14 17 17 18 19 22 24 24 LCS_GDT K 369 K 369 4 5 16 3 4 4 4 4 5 5 7 9 10 11 13 14 15 17 18 19 19 20 23 LCS_GDT G 370 G 370 4 5 16 3 4 4 4 4 5 8 8 10 11 11 13 15 17 17 18 19 22 24 24 LCS_GDT T 371 T 371 4 7 16 3 4 4 5 7 8 10 11 11 11 12 13 15 17 17 18 19 22 24 24 LCS_GDT N 372 N 372 5 7 16 4 5 5 6 7 8 10 11 11 11 12 13 14 17 17 18 19 19 24 24 LCS_GDT G 373 G 373 5 7 16 4 5 5 6 7 8 10 11 11 11 12 13 15 17 17 18 19 22 24 24 LCS_GDT Y 374 Y 374 5 7 16 4 5 5 6 7 8 10 11 11 11 12 13 15 17 17 19 19 22 24 24 LCS_GDT P 375 P 375 5 7 16 4 5 5 6 7 8 10 11 11 11 12 14 15 17 17 19 19 22 24 24 LCS_GDT I 376 I 376 5 7 15 4 5 5 6 7 8 10 11 11 11 12 14 15 17 18 19 19 22 24 24 LCS_GDT F 377 F 377 5 7 12 4 5 5 6 7 8 10 11 11 11 12 13 15 17 18 19 19 21 23 23 LCS_GDT Q 378 Q 378 4 6 12 4 5 5 5 6 8 10 11 11 11 12 13 14 17 18 19 19 21 23 23 LCS_GDT W 379 W 379 4 6 12 3 5 5 5 6 8 10 11 11 11 12 13 15 17 18 19 19 21 23 23 LCS_GDT S 380 S 380 3 4 12 3 3 4 4 6 6 7 9 10 10 12 13 15 17 18 19 19 21 23 23 LCS_GDT E 381 E 381 3 4 12 3 3 4 4 6 6 7 9 10 10 12 13 15 17 18 19 19 21 23 23 LCS_AVERAGE LCS_A: 26.95 ( 15.30 18.94 46.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 6 6 7 8 10 11 11 11 12 14 15 17 18 19 19 22 24 24 GDT PERCENT_AT 16.13 19.35 19.35 19.35 22.58 25.81 32.26 35.48 35.48 35.48 38.71 45.16 48.39 54.84 58.06 61.29 61.29 70.97 77.42 77.42 GDT RMS_LOCAL 0.19 0.33 0.33 0.33 1.80 2.18 2.54 2.70 2.70 2.70 3.10 4.63 4.86 5.15 5.31 5.69 5.59 6.98 7.26 7.26 GDT RMS_ALL_AT 23.43 23.08 23.08 23.08 14.54 13.97 13.11 12.67 12.67 12.67 12.68 12.11 13.47 13.61 13.69 13.11 12.43 11.12 11.33 11.33 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 21.031 0 0.593 0.985 21.228 0.000 0.000 LGA A 352 A 352 17.660 0 0.071 0.082 18.844 0.000 0.000 LGA E 353 E 353 19.742 0 0.038 0.098 24.512 0.000 0.000 LGA E 354 E 354 20.553 0 0.075 1.035 25.775 0.000 0.000 LGA L 355 L 355 17.412 0 0.040 0.191 18.545 0.000 0.000 LGA G 356 G 356 15.942 0 0.391 0.391 16.477 0.000 0.000 LGA N 357 N 357 11.848 0 0.606 0.632 16.443 2.143 1.071 LGA I 358 I 358 6.828 0 0.584 0.631 10.921 29.524 18.155 LGA I 359 I 359 3.118 0 0.593 0.613 10.855 57.976 33.929 LGA V 360 V 360 3.629 0 0.596 0.602 7.422 41.190 31.769 LGA A 361 A 361 7.400 0 0.616 0.551 11.991 9.048 8.190 LGA W 362 W 362 13.246 0 0.629 0.650 15.957 0.000 0.782 LGA N 363 N 363 17.173 0 0.188 0.676 20.740 0.000 0.000 LGA P 364 P 364 18.452 0 0.064 0.273 19.341 0.000 0.000 LGA N 365 N 365 20.870 0 0.142 0.180 22.875 0.000 0.000 LGA L 366 L 366 18.128 0 0.070 1.428 18.758 0.000 0.000 LGA W 367 W 367 17.145 0 0.603 1.337 23.216 0.000 0.000 LGA K 368 K 368 16.574 0 0.623 1.192 21.599 0.000 0.000 LGA K 369 K 369 11.633 0 0.684 0.588 12.869 0.000 0.106 LGA G 370 G 370 9.089 0 0.618 0.618 9.986 10.119 10.119 LGA T 371 T 371 2.536 0 0.538 0.464 5.892 48.929 46.327 LGA N 372 N 372 2.941 0 0.432 1.292 7.844 71.548 43.929 LGA G 373 G 373 2.766 0 0.324 0.324 5.088 53.333 53.333 LGA Y 374 Y 374 3.389 0 0.094 1.289 14.098 65.119 25.714 LGA P 375 P 375 2.292 0 0.098 0.389 6.366 54.167 42.449 LGA I 376 I 376 2.562 0 0.247 1.080 7.265 79.881 50.298 LGA F 377 F 377 0.232 0 0.091 1.248 7.130 83.929 55.022 LGA Q 378 Q 378 2.956 0 0.599 0.841 5.550 48.333 51.746 LGA W 379 W 379 1.631 0 0.553 0.987 9.894 59.762 29.184 LGA S 380 S 380 7.563 0 0.055 0.729 9.337 10.238 7.540 LGA E 381 E 381 10.490 0 0.542 1.107 16.063 0.357 0.143 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 9.919 9.882 11.379 23.406 16.445 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.70 33.871 29.268 0.392 LGA_LOCAL RMSD: 2.703 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.668 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.919 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.926781 * X + -0.285665 * Y + -0.243870 * Z + -11.974684 Y_new = -0.366162 * X + 0.542495 * Y + 0.756059 * Z + 32.156746 Z_new = -0.083682 * X + 0.789997 * Y + -0.607373 * Z + 17.982061 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.765326 0.083780 2.226240 [DEG: -158.4415 4.8002 127.5542 ] ZXZ: -2.829575 2.223547 -0.105533 [DEG: -162.1227 127.3998 -6.0466 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS088_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS088_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.70 29.268 9.92 REMARK ---------------------------------------------------------- MOLECULE T0537TS088_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 2529 N SER 351 22.036 13.060 62.997 1.00 0.00 N ATOM 2530 CA SER 351 22.063 11.739 62.340 1.00 0.00 C ATOM 2531 C SER 351 22.534 11.856 60.840 1.00 0.00 C ATOM 2532 O SER 351 23.422 11.080 60.493 1.00 0.00 O ATOM 2533 CB SER 351 20.652 11.094 62.515 1.00 0.00 C ATOM 2534 OG SER 351 20.283 10.704 63.866 1.00 0.00 O ATOM 2535 N ALA 352 21.904 12.671 59.986 1.00 0.00 N ATOM 2536 CA ALA 352 22.293 12.933 58.609 1.00 0.00 C ATOM 2537 C ALA 352 23.803 13.345 58.471 1.00 0.00 C ATOM 2538 O ALA 352 24.373 13.038 57.419 1.00 0.00 O ATOM 2539 CB ALA 352 21.401 13.997 57.946 1.00 0.00 C ATOM 2540 N GLU 353 24.344 14.234 59.326 1.00 0.00 N ATOM 2541 CA GLU 353 25.758 14.618 59.297 1.00 0.00 C ATOM 2542 C GLU 353 26.683 13.485 59.776 1.00 0.00 C ATOM 2543 O GLU 353 27.724 13.307 59.140 1.00 0.00 O ATOM 2544 CB GLU 353 25.951 15.893 60.147 1.00 0.00 C ATOM 2545 CG GLU 353 27.390 16.417 60.130 1.00 0.00 C ATOM 2546 CD GLU 353 27.522 17.640 60.994 1.00 0.00 C ATOM 2547 OE1 GLU 353 26.539 18.049 61.566 1.00 0.00 O ATOM 2548 OE2 GLU 353 28.625 18.099 61.174 1.00 0.00 O ATOM 2549 N GLU 354 26.391 12.769 60.904 1.00 0.00 N ATOM 2550 CA GLU 354 27.213 11.627 61.403 1.00 0.00 C ATOM 2551 C GLU 354 27.297 10.538 60.292 1.00 0.00 C ATOM 2552 O GLU 354 28.418 10.176 59.936 1.00 0.00 O ATOM 2553 CB GLU 354 26.630 11.084 62.728 1.00 0.00 C ATOM 2554 CG GLU 354 26.825 11.979 63.900 1.00 0.00 C ATOM 2555 CD GLU 354 26.187 11.392 65.129 1.00 0.00 C ATOM 2556 OE1 GLU 354 25.569 10.360 65.020 1.00 0.00 O ATOM 2557 OE2 GLU 354 26.412 11.912 66.198 1.00 0.00 O ATOM 2558 N LEU 355 26.147 9.961 59.851 1.00 0.00 N ATOM 2559 CA LEU 355 26.034 9.005 58.756 1.00 0.00 C ATOM 2560 C LEU 355 26.546 9.554 57.376 1.00 0.00 C ATOM 2561 O LEU 355 27.185 8.754 56.665 1.00 0.00 O ATOM 2562 CB LEU 355 24.545 8.642 58.671 1.00 0.00 C ATOM 2563 CG LEU 355 23.950 7.916 59.868 1.00 0.00 C ATOM 2564 CD1 LEU 355 22.458 7.681 59.671 1.00 0.00 C ATOM 2565 CD2 LEU 355 24.676 6.600 60.103 1.00 0.00 C ATOM 2566 N GLY 356 26.467 10.871 57.080 1.00 0.00 N ATOM 2567 CA GLY 356 26.914 11.368 55.741 1.00 0.00 C ATOM 2568 C GLY 356 25.957 11.020 54.571 1.00 0.00 C ATOM 2569 O GLY 356 26.467 10.827 53.450 1.00 0.00 O ATOM 2570 N ASN 357 24.627 11.097 54.827 1.00 0.00 N ATOM 2571 CA ASN 357 23.568 10.846 53.874 1.00 0.00 C ATOM 2572 C ASN 357 22.361 11.749 54.235 1.00 0.00 C ATOM 2573 O ASN 357 21.881 11.724 55.409 1.00 0.00 O ATOM 2574 CB ASN 357 23.178 9.355 53.916 1.00 0.00 C ATOM 2575 CG ASN 357 24.280 8.448 53.531 1.00 0.00 C ATOM 2576 OD1 ASN 357 24.761 8.443 52.390 1.00 0.00 O ATOM 2577 ND2 ASN 357 24.641 7.599 54.460 1.00 0.00 N ATOM 2578 N ILE 358 21.669 12.183 53.179 1.00 0.00 N ATOM 2579 CA ILE 358 20.511 13.071 53.319 1.00 0.00 C ATOM 2580 C ILE 358 19.358 12.393 54.075 1.00 0.00 C ATOM 2581 O ILE 358 18.790 11.399 53.603 1.00 0.00 O ATOM 2582 CB ILE 358 20.125 13.585 51.931 1.00 0.00 C ATOM 2583 CG1 ILE 358 21.250 14.259 51.245 1.00 0.00 C ATOM 2584 CG2 ILE 358 18.850 14.464 51.988 1.00 0.00 C ATOM 2585 CD1 ILE 358 20.948 14.489 49.760 1.00 0.00 C ATOM 2586 N ILE 359 18.904 13.058 55.152 1.00 0.00 N ATOM 2587 CA ILE 359 17.765 12.597 55.898 1.00 0.00 C ATOM 2588 C ILE 359 16.554 13.610 55.813 1.00 0.00 C ATOM 2589 O ILE 359 16.711 14.726 56.314 1.00 0.00 O ATOM 2590 CB ILE 359 18.077 12.182 57.329 1.00 0.00 C ATOM 2591 CG1 ILE 359 19.151 11.143 57.386 1.00 0.00 C ATOM 2592 CG2 ILE 359 16.817 11.770 58.064 1.00 0.00 C ATOM 2593 CD1 ILE 359 19.652 10.853 58.782 1.00 0.00 C ATOM 2594 N VAL 360 15.421 13.277 55.195 1.00 0.00 N ATOM 2595 CA VAL 360 14.229 14.170 55.238 1.00 0.00 C ATOM 2596 C VAL 360 13.407 14.037 56.566 1.00 0.00 C ATOM 2597 O VAL 360 13.037 12.936 57.013 1.00 0.00 O ATOM 2598 CB VAL 360 13.424 14.114 53.954 1.00 0.00 C ATOM 2599 CG1 VAL 360 12.207 15.096 54.076 1.00 0.00 C ATOM 2600 CG2 VAL 360 14.124 14.358 52.722 1.00 0.00 C ATOM 2601 N ALA 361 13.184 15.237 57.185 1.00 0.00 N ATOM 2602 CA ALA 361 12.530 15.431 58.479 1.00 0.00 C ATOM 2603 C ALA 361 10.992 15.578 58.342 1.00 0.00 C ATOM 2604 O ALA 361 10.478 16.522 57.728 1.00 0.00 O ATOM 2605 CB ALA 361 13.136 16.683 59.130 1.00 0.00 C ATOM 2606 N TRP 362 10.288 14.676 59.087 1.00 0.00 N ATOM 2607 CA TRP 362 8.839 14.646 59.081 1.00 0.00 C ATOM 2608 C TRP 362 8.191 14.493 60.504 1.00 0.00 C ATOM 2609 O TRP 362 8.520 13.511 61.120 1.00 0.00 O ATOM 2610 CB TRP 362 8.242 13.511 58.180 1.00 0.00 C ATOM 2611 CG TRP 362 8.446 13.783 56.676 1.00 0.00 C ATOM 2612 CD1 TRP 362 7.751 14.598 55.884 1.00 0.00 C ATOM 2613 CD2 TRP 362 9.428 13.184 55.844 1.00 0.00 C ATOM 2614 NE1 TRP 362 8.291 14.545 54.563 1.00 0.00 N ATOM 2615 CE2 TRP 362 9.265 13.709 54.543 1.00 0.00 C ATOM 2616 CE3 TRP 362 10.411 12.234 56.109 1.00 0.00 C ATOM 2617 CZ2 TRP 362 10.071 13.306 53.464 1.00 0.00 C ATOM 2618 CZ3 TRP 362 11.219 11.821 54.998 1.00 0.00 C ATOM 2619 CH2 TRP 362 11.052 12.347 53.712 1.00 0.00 H ATOM 2620 N ASN 363 7.504 15.446 61.123 1.00 0.00 N ATOM 2621 CA ASN 363 6.832 15.222 62.439 1.00 0.00 C ATOM 2622 C ASN 363 5.628 16.176 62.553 1.00 0.00 C ATOM 2623 O ASN 363 5.804 17.334 62.268 1.00 0.00 O ATOM 2624 CB ASN 363 7.864 15.528 63.542 1.00 0.00 C ATOM 2625 CG ASN 363 7.225 15.429 64.925 1.00 0.00 C ATOM 2626 OD1 ASN 363 6.530 16.347 65.375 1.00 0.00 O ATOM 2627 ND2 ASN 363 7.542 14.365 65.619 1.00 0.00 N ATOM 2628 N PRO 364 4.323 15.785 62.769 1.00 0.00 N ATOM 2629 CA PRO 364 3.302 16.744 62.824 1.00 0.00 C ATOM 2630 C PRO 364 3.590 18.045 63.685 1.00 0.00 C ATOM 2631 O PRO 364 2.982 19.062 63.348 1.00 0.00 O ATOM 2632 CB PRO 364 1.946 16.095 63.076 1.00 0.00 C ATOM 2633 CG PRO 364 2.407 14.779 63.799 1.00 0.00 C ATOM 2634 CD PRO 364 3.688 14.443 63.148 1.00 0.00 C ATOM 2635 N ASN 365 4.057 17.965 64.921 1.00 0.00 N ATOM 2636 CA ASN 365 4.421 19.198 65.668 1.00 0.00 C ATOM 2637 C ASN 365 5.121 20.232 64.711 1.00 0.00 C ATOM 2638 O ASN 365 4.798 21.412 64.811 1.00 0.00 O ATOM 2639 CB ASN 365 5.315 18.921 66.850 1.00 0.00 C ATOM 2640 CG ASN 365 4.585 18.258 67.990 1.00 0.00 C ATOM 2641 OD1 ASN 365 3.351 18.266 68.050 1.00 0.00 O ATOM 2642 ND2 ASN 365 5.343 17.768 68.937 1.00 0.00 N ATOM 2643 N LEU 366 6.255 19.855 64.070 1.00 0.00 N ATOM 2644 CA LEU 366 6.933 20.696 63.077 1.00 0.00 C ATOM 2645 C LEU 366 5.888 21.201 61.999 1.00 0.00 C ATOM 2646 O LEU 366 5.987 22.357 61.546 1.00 0.00 O ATOM 2647 CB LEU 366 8.070 19.886 62.427 1.00 0.00 C ATOM 2648 CG LEU 366 9.241 19.579 63.332 1.00 0.00 C ATOM 2649 CD1 LEU 366 10.223 18.664 62.612 1.00 0.00 C ATOM 2650 CD2 LEU 366 9.922 20.868 63.766 1.00 0.00 C ATOM 2651 N TRP 367 4.987 20.312 61.488 1.00 0.00 N ATOM 2652 CA TRP 367 3.882 20.648 60.551 1.00 0.00 C ATOM 2653 C TRP 367 2.966 21.738 61.196 1.00 0.00 C ATOM 2654 O TRP 367 2.592 22.662 60.478 1.00 0.00 O ATOM 2655 CB TRP 367 3.115 19.380 60.120 1.00 0.00 C ATOM 2656 CG TRP 367 1.957 19.636 59.150 1.00 0.00 C ATOM 2657 CD1 TRP 367 1.911 20.636 58.199 1.00 0.00 C ATOM 2658 CD2 TRP 367 0.844 18.837 59.086 1.00 0.00 C ATOM 2659 NE1 TRP 367 0.779 20.481 57.546 1.00 0.00 N ATOM 2660 CE2 TRP 367 0.119 19.418 58.046 1.00 0.00 C ATOM 2661 CE3 TRP 367 0.367 17.725 59.773 1.00 0.00 C ATOM 2662 CZ2 TRP 367 -1.098 18.877 57.662 1.00 0.00 C ATOM 2663 CZ3 TRP 367 -0.855 17.197 59.378 1.00 0.00 C ATOM 2664 CH2 TRP 367 -1.586 17.767 58.338 1.00 0.00 H ATOM 2665 N LYS 368 2.542 21.564 62.474 1.00 0.00 N ATOM 2666 CA LYS 368 1.750 22.554 63.229 1.00 0.00 C ATOM 2667 C LYS 368 2.484 23.926 63.230 1.00 0.00 C ATOM 2668 O LYS 368 1.805 24.933 63.103 1.00 0.00 O ATOM 2669 CB LYS 368 1.472 22.101 64.664 1.00 0.00 C ATOM 2670 CG LYS 368 0.633 20.866 64.790 1.00 0.00 C ATOM 2671 CD LYS 368 -0.574 20.913 63.835 1.00 0.00 C ATOM 2672 CE LYS 368 -1.765 20.202 64.505 1.00 0.00 C ATOM 2673 NZ LYS 368 -1.677 18.743 64.418 1.00 0.00 N ATOM 2674 N LYS 369 3.779 23.977 63.610 1.00 0.00 N ATOM 2675 CA LYS 369 4.608 25.187 63.686 1.00 0.00 C ATOM 2676 C LYS 369 4.705 26.004 62.345 1.00 0.00 C ATOM 2677 O LYS 369 4.850 27.225 62.430 1.00 0.00 O ATOM 2678 CB LYS 369 6.015 24.759 64.137 1.00 0.00 C ATOM 2679 CG LYS 369 6.109 24.250 65.560 1.00 0.00 C ATOM 2680 CD LYS 369 7.535 23.865 65.927 1.00 0.00 C ATOM 2681 CE LYS 369 7.623 23.362 67.359 1.00 0.00 C ATOM 2682 NZ LYS 369 9.011 22.982 67.732 1.00 0.00 N ATOM 2683 N GLY 370 4.469 25.413 61.175 1.00 0.00 N ATOM 2684 CA GLY 370 4.625 26.029 59.854 1.00 0.00 C ATOM 2685 C GLY 370 6.014 25.769 59.187 1.00 0.00 C ATOM 2686 O GLY 370 6.383 26.602 58.370 1.00 0.00 O ATOM 2687 N THR 371 6.852 24.804 59.657 1.00 0.00 N ATOM 2688 CA THR 371 8.110 24.423 59.058 1.00 0.00 C ATOM 2689 C THR 371 7.875 23.374 57.931 1.00 0.00 C ATOM 2690 O THR 371 7.974 22.158 58.133 1.00 0.00 O ATOM 2691 CB THR 371 9.088 24.037 60.192 1.00 0.00 C ATOM 2692 OG1 THR 371 8.796 22.945 61.031 1.00 0.00 O ATOM 2693 CG2 THR 371 9.396 25.250 61.148 1.00 0.00 C ATOM 2694 N ASN 372 7.396 23.908 56.819 1.00 0.00 N ATOM 2695 CA ASN 372 7.034 23.169 55.624 1.00 0.00 C ATOM 2696 C ASN 372 7.870 23.741 54.490 1.00 0.00 C ATOM 2697 O ASN 372 7.442 24.720 53.860 1.00 0.00 O ATOM 2698 CB ASN 372 5.522 23.266 55.412 1.00 0.00 C ATOM 2699 CG ASN 372 5.111 22.452 54.182 1.00 0.00 C ATOM 2700 OD1 ASN 372 5.715 21.425 53.847 1.00 0.00 O ATOM 2701 ND2 ASN 372 4.110 22.947 53.498 1.00 0.00 N ATOM 2702 N GLY 373 8.645 22.836 53.925 1.00 0.00 N ATOM 2703 CA GLY 373 9.571 23.235 52.890 1.00 0.00 C ATOM 2704 C GLY 373 10.673 24.180 53.478 1.00 0.00 C ATOM 2705 O GLY 373 10.973 25.152 52.773 1.00 0.00 O ATOM 2706 N TYR 374 11.198 23.974 54.702 1.00 0.00 N ATOM 2707 CA TYR 374 12.242 24.822 55.124 1.00 0.00 C ATOM 2708 C TYR 374 13.506 23.937 55.179 1.00 0.00 C ATOM 2709 O TYR 374 13.612 23.241 56.186 1.00 0.00 O ATOM 2710 CB TYR 374 11.864 25.370 56.519 1.00 0.00 C ATOM 2711 CG TYR 374 13.030 26.208 57.105 1.00 0.00 C ATOM 2712 CD1 TYR 374 13.167 27.553 56.793 1.00 0.00 C ATOM 2713 CD2 TYR 374 13.947 25.642 57.979 1.00 0.00 C ATOM 2714 CE1 TYR 374 14.186 28.313 57.333 1.00 0.00 C ATOM 2715 CE2 TYR 374 14.970 26.393 58.526 1.00 0.00 C ATOM 2716 CZ TYR 374 15.086 27.729 58.199 1.00 0.00 C ATOM 2717 OH TYR 374 16.104 28.481 58.742 1.00 0.00 H ATOM 2718 N PRO 375 14.468 23.781 54.161 1.00 0.00 N ATOM 2719 CA PRO 375 15.576 22.868 54.408 1.00 0.00 C ATOM 2720 C PRO 375 16.406 23.062 55.711 1.00 0.00 C ATOM 2721 O PRO 375 16.289 24.051 56.457 1.00 0.00 O ATOM 2722 CB PRO 375 16.447 22.842 53.124 1.00 0.00 C ATOM 2723 CG PRO 375 16.416 24.363 52.886 1.00 0.00 C ATOM 2724 CD PRO 375 14.971 24.741 53.165 1.00 0.00 C ATOM 2725 N ILE 376 17.135 21.933 55.978 1.00 0.00 N ATOM 2726 CA ILE 376 18.062 21.731 57.099 1.00 0.00 C ATOM 2727 C ILE 376 19.498 21.585 56.517 1.00 0.00 C ATOM 2728 O ILE 376 19.710 20.674 55.681 1.00 0.00 O ATOM 2729 CB ILE 376 17.645 20.436 57.864 1.00 0.00 C ATOM 2730 CG1 ILE 376 16.209 20.565 58.465 1.00 0.00 C ATOM 2731 CG2 ILE 376 18.663 20.118 59.075 1.00 0.00 C ATOM 2732 CD1 ILE 376 15.639 19.253 59.069 1.00 0.00 C ATOM 2733 N PHE 377 20.418 22.484 56.822 1.00 0.00 N ATOM 2734 CA PHE 377 21.796 22.394 56.380 1.00 0.00 C ATOM 2735 C PHE 377 22.711 23.090 57.437 1.00 0.00 C ATOM 2736 O PHE 377 22.405 24.207 57.868 1.00 0.00 O ATOM 2737 CB PHE 377 21.969 23.007 55.012 1.00 0.00 C ATOM 2738 CG PHE 377 21.899 24.514 55.001 1.00 0.00 C ATOM 2739 CD1 PHE 377 23.037 25.286 55.190 1.00 0.00 C ATOM 2740 CD2 PHE 377 20.688 25.158 54.806 1.00 0.00 C ATOM 2741 CE1 PHE 377 22.964 26.667 55.181 1.00 0.00 C ATOM 2742 CE2 PHE 377 20.611 26.535 54.793 1.00 0.00 C ATOM 2743 CZ PHE 377 21.751 27.291 54.982 1.00 0.00 C ATOM 2744 N GLN 378 23.848 22.478 57.788 1.00 0.00 N ATOM 2745 CA GLN 378 24.733 23.108 58.760 1.00 0.00 C ATOM 2746 C GLN 378 25.457 24.349 58.145 1.00 0.00 C ATOM 2747 O GLN 378 26.345 24.221 57.282 1.00 0.00 O ATOM 2748 CB GLN 378 25.713 22.027 59.237 1.00 0.00 C ATOM 2749 CG GLN 378 25.101 20.854 59.914 1.00 0.00 C ATOM 2750 CD GLN 378 24.436 21.207 61.230 1.00 0.00 C ATOM 2751 OE1 GLN 378 25.040 21.845 62.096 1.00 0.00 O ATOM 2752 NE2 GLN 378 23.186 20.787 61.390 1.00 0.00 N ATOM 2753 N TRP 379 25.079 25.507 58.677 1.00 0.00 N ATOM 2754 CA TRP 379 25.648 26.814 58.334 1.00 0.00 C ATOM 2755 C TRP 379 27.070 26.916 58.924 1.00 0.00 C ATOM 2756 O TRP 379 27.241 26.936 60.156 1.00 0.00 O ATOM 2757 CB TRP 379 24.721 27.909 58.852 1.00 0.00 C ATOM 2758 CG TRP 379 25.245 29.294 58.513 1.00 0.00 C ATOM 2759 CD1 TRP 379 25.097 29.941 57.323 1.00 0.00 C ATOM 2760 CD2 TRP 379 25.970 30.185 59.368 1.00 0.00 C ATOM 2761 NE1 TRP 379 25.685 31.179 57.383 1.00 0.00 N ATOM 2762 CE2 TRP 379 26.229 31.353 58.631 1.00 0.00 C ATOM 2763 CE3 TRP 379 26.429 30.106 60.689 1.00 0.00 C ATOM 2764 CZ2 TRP 379 26.921 32.431 59.160 1.00 0.00 C ATOM 2765 CZ3 TRP 379 27.122 31.187 61.222 1.00 0.00 C ATOM 2766 CH2 TRP 379 27.359 32.315 60.479 1.00 0.00 H ATOM 2767 N SER 380 28.014 27.268 58.067 1.00 0.00 N ATOM 2768 CA SER 380 29.419 27.363 58.381 1.00 0.00 C ATOM 2769 C SER 380 29.970 28.770 58.012 1.00 0.00 C ATOM 2770 O SER 380 29.722 29.295 56.907 1.00 0.00 O ATOM 2771 CB SER 380 30.115 26.248 57.600 1.00 0.00 C ATOM 2772 OG SER 380 30.278 26.389 56.213 1.00 0.00 O ATOM 2773 N GLU 381 30.921 29.218 58.845 1.00 0.00 N ATOM 2774 CA GLU 381 31.565 30.523 58.790 1.00 0.00 C ATOM 2775 C GLU 381 31.800 30.917 57.314 1.00 0.00 C ATOM 2776 O GLU 381 31.258 31.924 56.857 1.00 0.00 O ATOM 2777 CB GLU 381 32.874 30.498 59.588 1.00 0.00 C ATOM 2778 CG GLU 381 32.690 30.253 61.078 1.00 0.00 C ATOM 2779 CD GLU 381 34.004 30.236 61.833 1.00 0.00 C ATOM 2780 OE1 GLU 381 35.067 30.268 61.175 1.00 0.00 O ATOM 2781 OE2 GLU 381 33.973 30.191 63.080 1.00 0.00 O ATOM 2782 OXT GLU 381 32.569 30.234 56.653 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.73 46.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 94.79 50.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 78.64 50.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 114.77 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.94 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 84.56 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 10.75 100.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 86.94 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 40.77 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.77 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 75.30 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 31.72 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 73.16 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 56.01 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 49.18 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 37.62 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 7.71 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 49.18 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.30 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 70.30 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 70.30 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.92 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.92 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3200 CRMSCA SECONDARY STRUCTURE . . 8.29 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.13 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.75 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.00 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 8.45 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.24 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.50 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.69 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 13.00 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 11.53 41 100.0 41 CRMSSC SURFACE . . . . . . . . 13.07 120 100.0 120 CRMSSC BURIED . . . . . . . . 6.50 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.41 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 10.04 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.78 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.11 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.298 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 8.002 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 9.524 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 8.124 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.371 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 8.159 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 9.633 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 7.899 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.870 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 12.295 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 10.779 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 12.327 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 6.377 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.610 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 9.415 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 11.014 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 7.589 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 17 31 31 DISTCA CA (P) 0.00 0.00 0.00 12.90 54.84 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.23 6.96 DISTCA ALL (N) 0 1 3 23 107 254 254 DISTALL ALL (P) 0.00 0.39 1.18 9.06 42.13 254 DISTALL ALL (RMS) 0.00 1.97 2.21 4.10 6.59 DISTALL END of the results output