####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS080_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS080_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 355 - 368 4.56 11.13 LONGEST_CONTINUOUS_SEGMENT: 14 356 - 369 4.81 11.81 LCS_AVERAGE: 40.17 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 371 - 376 1.79 16.47 LCS_AVERAGE: 15.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 357 - 360 0.71 20.68 LONGEST_CONTINUOUS_SEGMENT: 4 369 - 372 0.53 13.33 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.84 16.91 LCS_AVERAGE: 10.93 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 10 3 3 3 4 4 4 5 5 6 7 14 15 16 18 19 21 21 22 23 25 LCS_GDT A 352 A 352 3 4 10 3 3 3 5 7 8 9 10 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT E 353 E 353 3 4 12 3 4 5 6 7 8 9 9 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT E 354 E 354 3 4 12 2 4 5 6 6 7 9 10 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT L 355 L 355 3 3 14 3 3 5 6 6 7 8 10 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT G 356 G 356 3 3 14 3 3 3 3 4 5 8 9 10 11 14 16 18 19 20 21 23 25 28 28 LCS_GDT N 357 N 357 4 5 14 3 4 4 4 5 5 8 9 10 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT I 358 I 358 4 5 14 3 4 4 4 5 5 8 9 10 11 15 16 18 19 20 21 23 25 28 28 LCS_GDT I 359 I 359 4 5 14 3 4 4 4 5 5 6 7 9 10 11 13 13 14 15 19 20 21 23 23 LCS_GDT V 360 V 360 4 5 14 3 4 4 4 5 5 6 6 9 9 14 15 16 18 19 21 21 22 23 25 LCS_GDT A 361 A 361 3 5 14 3 3 3 4 5 6 8 9 10 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT W 362 W 362 3 5 14 3 3 4 6 6 7 8 10 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT N 363 N 363 3 5 14 3 4 5 6 6 7 8 9 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT P 364 P 364 3 5 14 3 4 5 6 6 7 8 9 10 11 12 16 18 19 20 21 23 25 28 28 LCS_GDT N 365 N 365 3 5 14 3 3 3 4 5 7 8 9 10 11 12 13 14 16 20 20 23 25 28 28 LCS_GDT L 366 L 366 3 5 14 3 3 3 4 5 7 8 9 10 11 12 13 13 16 17 19 23 25 28 28 LCS_GDT W 367 W 367 3 5 14 3 3 4 4 5 7 8 9 10 11 12 13 15 19 20 21 23 25 28 28 LCS_GDT K 368 K 368 3 5 14 3 3 4 4 5 7 8 10 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT K 369 K 369 4 4 14 3 4 4 4 5 5 8 10 11 13 15 16 18 19 20 21 22 25 28 28 LCS_GDT G 370 G 370 4 4 11 3 4 4 4 5 7 8 10 11 13 15 16 18 19 20 21 22 24 28 28 LCS_GDT T 371 T 371 4 6 11 3 4 4 4 6 8 9 10 11 13 15 16 18 19 20 21 22 25 28 28 LCS_GDT N 372 N 372 4 6 11 3 4 5 5 7 8 9 10 11 13 15 16 18 19 20 21 22 25 28 28 LCS_GDT G 373 G 373 4 6 11 3 3 5 5 7 8 9 10 11 13 15 16 18 19 20 21 23 25 28 28 LCS_GDT Y 374 Y 374 4 6 11 3 3 5 5 7 8 9 10 10 12 12 15 18 19 20 21 23 25 28 28 LCS_GDT P 375 P 375 4 6 11 3 3 5 5 7 8 9 10 10 12 12 12 14 14 14 16 23 25 28 28 LCS_GDT I 376 I 376 4 6 11 0 3 5 5 7 8 9 10 10 12 12 12 14 14 14 17 20 25 28 28 LCS_GDT F 377 F 377 3 4 11 1 3 3 4 4 6 9 10 10 12 12 12 14 14 17 19 23 25 28 28 LCS_GDT Q 378 Q 378 3 4 11 3 3 3 4 5 7 9 10 10 12 12 12 14 14 16 19 23 25 28 28 LCS_GDT W 379 W 379 3 4 11 3 3 3 4 5 7 9 10 10 12 12 12 14 14 15 19 23 25 28 28 LCS_GDT S 380 S 380 3 4 11 3 3 3 4 4 5 6 8 9 10 11 12 14 14 16 19 23 25 28 28 LCS_GDT E 381 E 381 3 4 11 3 3 3 4 4 4 6 8 8 8 9 12 12 14 16 19 23 24 28 28 LCS_AVERAGE LCS_A: 22.10 ( 10.93 15.19 40.17 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 7 8 9 10 11 13 15 16 18 19 20 21 23 25 28 28 GDT PERCENT_AT 9.68 12.90 16.13 19.35 22.58 25.81 29.03 32.26 35.48 41.94 48.39 51.61 58.06 61.29 64.52 67.74 74.19 80.65 90.32 90.32 GDT RMS_LOCAL 0.02 0.53 0.97 1.25 1.58 1.99 2.31 2.80 3.22 3.69 4.02 4.25 4.73 4.98 5.32 5.28 6.78 7.20 7.54 7.54 GDT RMS_ALL_AT 21.11 13.33 12.31 11.47 17.00 16.22 15.79 14.14 11.62 11.36 11.12 11.09 10.35 10.24 9.86 10.70 8.51 8.20 8.13 8.13 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 9.861 0 0.107 0.549 11.649 4.405 2.937 LGA A 352 A 352 6.439 0 0.301 0.310 9.019 17.500 14.286 LGA E 353 E 353 5.134 0 0.610 1.011 9.245 47.500 27.354 LGA E 354 E 354 1.882 0 0.614 1.114 4.842 51.548 67.302 LGA L 355 L 355 8.662 0 0.628 0.871 13.931 5.000 2.560 LGA G 356 G 356 12.214 0 0.593 0.593 14.014 0.000 0.000 LGA N 357 N 357 13.110 0 0.589 0.538 17.096 0.000 1.369 LGA I 358 I 358 19.631 0 0.600 0.627 22.933 0.000 0.000 LGA I 359 I 359 25.392 0 0.548 0.722 28.703 0.000 0.000 LGA V 360 V 360 22.822 0 0.625 0.870 24.837 0.000 0.000 LGA A 361 A 361 24.550 0 0.646 0.578 25.220 0.000 0.000 LGA W 362 W 362 25.080 0 0.637 1.416 27.951 0.000 0.000 LGA N 363 N 363 25.432 0 0.382 1.145 30.374 0.000 0.000 LGA P 364 P 364 20.313 0 0.535 0.480 23.974 0.000 0.000 LGA N 365 N 365 19.408 0 0.742 1.158 24.625 0.000 0.000 LGA L 366 L 366 17.220 0 0.064 1.421 17.580 0.000 0.000 LGA W 367 W 367 16.313 0 0.647 1.379 23.111 0.000 0.000 LGA K 368 K 368 16.002 0 0.293 0.978 22.648 0.000 0.000 LGA K 369 K 369 13.346 0 0.651 0.579 18.399 0.000 0.000 LGA G 370 G 370 8.852 0 0.051 0.051 10.355 9.286 9.286 LGA T 371 T 371 2.794 0 0.658 0.603 4.837 62.857 62.925 LGA N 372 N 372 1.790 0 0.658 1.327 5.535 65.595 50.536 LGA G 373 G 373 3.322 0 0.684 0.684 3.322 63.214 63.214 LGA Y 374 Y 374 2.683 0 0.209 0.300 3.925 55.357 52.460 LGA P 375 P 375 3.054 0 0.651 0.588 5.151 51.905 45.782 LGA I 376 I 376 2.206 0 0.580 1.420 6.110 55.952 47.738 LGA F 377 F 377 4.335 0 0.585 1.462 13.323 56.071 21.991 LGA Q 378 Q 378 2.215 0 0.648 1.197 5.037 51.310 53.386 LGA W 379 W 379 2.784 0 0.286 1.070 6.982 44.643 46.497 LGA S 380 S 380 8.435 0 0.088 0.692 9.980 6.786 4.841 LGA E 381 E 381 13.925 0 0.062 1.131 19.511 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.104 7.958 9.395 20.933 18.531 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 10 2.80 33.065 29.152 0.345 LGA_LOCAL RMSD: 2.800 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.141 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.104 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.987165 * X + -0.157474 * Y + -0.026589 * Z + -20.074064 Y_new = 0.156495 * X + 0.987038 * Y + -0.035571 * Z + -10.057477 Z_new = 0.031846 * X + 0.030954 * Y + 0.999013 * Z + 59.106087 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.157222 -0.031851 0.030974 [DEG: 9.0081 -1.8249 1.7747 ] ZXZ: -0.641882 0.044425 0.799597 [DEG: -36.7771 2.5454 45.8135 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS080_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS080_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 10 2.80 29.152 8.10 REMARK ---------------------------------------------------------- MOLECULE T0537TS080_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1RU4A 1JTAA 3H09A ATOM 3113 N SER 351 12.104 15.547 57.045 1.00 50.00 N ATOM 3114 CA SER 351 12.604 15.955 55.764 1.00 50.00 C ATOM 3115 C SER 351 12.726 14.767 54.857 1.00 50.00 C ATOM 3116 O SER 351 13.275 13.725 55.219 1.00 50.00 O ATOM 3117 H SER 351 12.379 14.772 57.411 1.00 50.00 H ATOM 3118 CB SER 351 13.954 16.659 55.915 1.00 50.00 C ATOM 3119 HG SER 351 13.953 17.542 54.273 1.00 50.00 H ATOM 3120 OG SER 351 14.482 17.027 54.653 1.00 50.00 O ATOM 3121 N ALA 352 12.208 14.940 53.624 1.00 50.00 N ATOM 3122 CA ALA 352 12.273 13.988 52.551 1.00 50.00 C ATOM 3123 C ALA 352 11.604 12.700 52.913 1.00 50.00 C ATOM 3124 O ALA 352 11.858 11.685 52.271 1.00 50.00 O ATOM 3125 H ALA 352 11.794 15.730 53.501 1.00 50.00 H ATOM 3126 CB ALA 352 13.720 13.726 52.162 1.00 50.00 C ATOM 3127 N GLU 353 10.690 12.697 53.898 1.00 50.00 N ATOM 3128 CA GLU 353 10.080 11.466 54.320 1.00 50.00 C ATOM 3129 C GLU 353 8.637 11.786 54.520 1.00 50.00 C ATOM 3130 O GLU 353 8.271 12.955 54.492 1.00 50.00 O ATOM 3131 H GLU 353 10.460 13.472 54.294 1.00 50.00 H ATOM 3132 CB GLU 353 10.758 10.938 55.585 1.00 50.00 C ATOM 3133 CD GLU 353 11.600 12.986 56.802 1.00 50.00 C ATOM 3134 CG GLU 353 10.603 11.844 56.797 1.00 50.00 C ATOM 3135 OE1 GLU 353 12.219 13.239 55.746 1.00 50.00 O ATOM 3136 OE2 GLU 353 11.760 13.629 57.860 1.00 50.00 O ATOM 3137 N GLU 354 7.775 10.761 54.706 1.00 50.00 N ATOM 3138 CA GLU 354 6.380 11.018 54.944 1.00 50.00 C ATOM 3139 C GLU 354 6.127 11.004 56.424 1.00 50.00 C ATOM 3140 O GLU 354 6.852 10.366 57.185 1.00 50.00 O ATOM 3141 H GLU 354 8.079 9.914 54.680 1.00 50.00 H ATOM 3142 CB GLU 354 5.514 9.983 54.224 1.00 50.00 C ATOM 3143 CD GLU 354 4.731 9.007 52.030 1.00 50.00 C ATOM 3144 CG GLU 354 5.619 10.032 52.709 1.00 50.00 C ATOM 3145 OE1 GLU 354 4.210 8.114 52.731 1.00 50.00 O ATOM 3146 OE2 GLU 354 4.557 9.096 50.796 1.00 50.00 O ATOM 3147 N LEU 355 5.068 11.725 56.860 1.00 50.00 N ATOM 3148 CA LEU 355 4.689 11.834 58.243 1.00 50.00 C ATOM 3149 C LEU 355 3.305 11.293 58.402 1.00 50.00 C ATOM 3150 O LEU 355 2.456 11.459 57.528 1.00 50.00 O ATOM 3151 H LEU 355 4.591 12.151 56.228 1.00 50.00 H ATOM 3152 CB LEU 355 4.778 13.288 58.710 1.00 50.00 C ATOM 3153 CG LEU 355 4.510 13.541 60.195 1.00 50.00 C ATOM 3154 CD1 LEU 355 5.178 14.829 60.650 1.00 50.00 C ATOM 3155 CD2 LEU 355 3.016 13.594 60.471 1.00 50.00 C ATOM 3156 N GLY 356 3.041 10.639 59.550 1.00 50.00 N ATOM 3157 CA GLY 356 1.710 10.188 59.827 1.00 50.00 C ATOM 3158 C GLY 356 1.563 10.202 61.311 1.00 50.00 C ATOM 3159 O GLY 356 1.978 9.265 61.993 1.00 50.00 O ATOM 3160 H GLY 356 3.700 10.486 60.143 1.00 50.00 H ATOM 3161 N ASN 357 0.958 11.276 61.855 1.00 50.00 N ATOM 3162 CA ASN 357 0.772 11.325 63.276 1.00 50.00 C ATOM 3163 C ASN 357 -0.695 11.404 63.537 1.00 50.00 C ATOM 3164 O ASN 357 -1.334 12.424 63.278 1.00 50.00 O ATOM 3165 H ASN 357 0.671 11.957 61.340 1.00 50.00 H ATOM 3166 CB ASN 357 1.538 12.506 63.876 1.00 50.00 C ATOM 3167 CG ASN 357 3.040 12.367 63.717 1.00 50.00 C ATOM 3168 OD1 ASN 357 3.586 11.270 63.823 1.00 50.00 O ATOM 3169 HD21 ASN 357 4.606 13.457 63.358 1.00 50.00 H ATOM 3170 HD22 ASN 357 3.274 14.267 63.391 1.00 50.00 H ATOM 3171 ND2 ASN 357 3.712 13.484 63.461 1.00 50.00 N ATOM 3172 N ILE 358 -1.255 10.324 64.113 1.00 50.00 N ATOM 3173 CA ILE 358 -2.664 10.268 64.362 1.00 50.00 C ATOM 3174 C ILE 358 -2.835 10.219 65.840 1.00 50.00 C ATOM 3175 O ILE 358 -1.892 9.910 66.566 1.00 50.00 O ATOM 3176 H ILE 358 -0.729 9.631 64.343 1.00 50.00 H ATOM 3177 CB ILE 358 -3.313 9.062 63.658 1.00 50.00 C ATOM 3178 CD1 ILE 358 -3.524 7.911 61.395 1.00 50.00 C ATOM 3179 CG1 ILE 358 -3.124 9.162 62.143 1.00 50.00 C ATOM 3180 CG2 ILE 358 -4.781 8.949 64.041 1.00 50.00 C ATOM 3181 N ILE 359 -4.072 10.523 66.288 1.00 50.00 N ATOM 3182 CA ILE 359 -4.456 10.729 67.657 1.00 50.00 C ATOM 3183 C ILE 359 -3.314 11.375 68.359 1.00 50.00 C ATOM 3184 O ILE 359 -2.521 10.740 69.054 1.00 50.00 O ATOM 3185 H ILE 359 -4.685 10.594 65.633 1.00 50.00 H ATOM 3186 CB ILE 359 -4.863 9.407 68.334 1.00 50.00 C ATOM 3187 CD1 ILE 359 -7.262 9.592 67.492 1.00 50.00 C ATOM 3188 CG1 ILE 359 -6.011 8.746 67.567 1.00 50.00 C ATOM 3189 CG2 ILE 359 -5.220 9.643 69.793 1.00 50.00 C ATOM 3190 N VAL 360 -3.257 12.709 68.232 1.00 50.00 N ATOM 3191 CA VAL 360 -2.169 13.424 68.816 1.00 50.00 C ATOM 3192 C VAL 360 -2.514 14.867 68.813 1.00 50.00 C ATOM 3193 O VAL 360 -3.293 15.338 67.984 1.00 50.00 O ATOM 3194 H VAL 360 -3.897 13.154 67.782 1.00 50.00 H ATOM 3195 CB VAL 360 -0.851 13.158 68.065 1.00 50.00 C ATOM 3196 CG1 VAL 360 -0.935 13.683 66.640 1.00 50.00 C ATOM 3197 CG2 VAL 360 0.319 13.791 68.802 1.00 50.00 C ATOM 3198 N ALA 361 -1.951 15.611 69.778 1.00 50.00 N ATOM 3199 CA ALA 361 -2.119 17.022 69.702 1.00 50.00 C ATOM 3200 C ALA 361 -0.842 17.478 69.087 1.00 50.00 C ATOM 3201 O ALA 361 0.215 17.395 69.712 1.00 50.00 O ATOM 3202 H ALA 361 -1.481 15.249 70.455 1.00 50.00 H ATOM 3203 CB ALA 361 -2.390 17.598 71.084 1.00 50.00 C ATOM 3204 N TRP 362 -0.894 17.955 67.827 1.00 50.00 N ATOM 3205 CA TRP 362 0.345 18.356 67.241 1.00 50.00 C ATOM 3206 C TRP 362 0.258 19.815 66.920 1.00 50.00 C ATOM 3207 O TRP 362 -0.737 20.293 66.378 1.00 50.00 O ATOM 3208 H TRP 362 -1.659 18.028 67.357 1.00 50.00 H ATOM 3209 CB TRP 362 0.644 17.519 65.995 1.00 50.00 C ATOM 3210 HB2 TRP 362 0.397 16.525 66.137 1.00 50.00 H ATOM 3211 HB3 TRP 362 1.399 17.843 65.424 1.00 50.00 H ATOM 3212 CG TRP 362 -0.394 17.651 64.922 1.00 50.00 C ATOM 3213 CD1 TRP 362 -1.512 16.885 64.766 1.00 50.00 C ATOM 3214 HE1 TRP 362 -3.027 16.923 63.368 1.00 50.00 H ATOM 3215 NE1 TRP 362 -2.224 17.303 63.667 1.00 50.00 N ATOM 3216 CD2 TRP 362 -0.409 18.607 63.854 1.00 50.00 C ATOM 3217 CE2 TRP 362 -1.565 18.361 63.092 1.00 50.00 C ATOM 3218 CH2 TRP 362 -1.042 20.127 61.614 1.00 50.00 C ATOM 3219 CZ2 TRP 362 -1.892 19.116 61.967 1.00 50.00 C ATOM 3220 CE3 TRP 362 0.443 19.647 63.471 1.00 50.00 C ATOM 3221 CZ3 TRP 362 0.114 20.394 62.355 1.00 50.00 C ATOM 3222 N ASN 363 1.338 20.548 67.257 1.00 50.00 N ATOM 3223 CA ASN 363 1.435 21.975 67.153 1.00 50.00 C ATOM 3224 C ASN 363 2.700 22.235 66.390 1.00 50.00 C ATOM 3225 O ASN 363 3.357 21.234 66.110 1.00 50.00 O ATOM 3226 H ASN 363 2.034 20.071 67.568 1.00 50.00 H ATOM 3227 CB ASN 363 1.413 22.616 68.543 1.00 50.00 C ATOM 3228 CG ASN 363 0.074 22.458 69.236 1.00 50.00 C ATOM 3229 OD1 ASN 363 -0.898 23.128 68.888 1.00 50.00 O ATOM 3230 HD21 ASN 363 -0.750 21.438 70.668 1.00 50.00 H ATOM 3231 HD22 ASN 363 0.756 21.101 70.445 1.00 50.00 H ATOM 3232 ND2 ASN 363 0.021 21.570 70.222 1.00 50.00 N ATOM 3233 N PRO 364 3.110 23.474 66.084 1.00 50.00 N ATOM 3234 CA PRO 364 4.128 23.732 65.093 1.00 50.00 C ATOM 3235 C PRO 364 5.240 22.766 64.927 1.00 50.00 C ATOM 3236 O PRO 364 6.213 22.758 65.680 1.00 50.00 O ATOM 3237 CB PRO 364 4.731 25.071 65.524 1.00 50.00 C ATOM 3238 CD PRO 364 2.940 24.646 67.053 1.00 50.00 C ATOM 3239 CG PRO 364 3.645 25.738 66.299 1.00 50.00 C ATOM 3240 N ASN 365 5.071 21.971 63.865 1.00 50.00 N ATOM 3241 CA ASN 365 5.957 20.965 63.409 1.00 50.00 C ATOM 3242 C ASN 365 6.119 21.312 61.969 1.00 50.00 C ATOM 3243 O ASN 365 5.366 22.128 61.439 1.00 50.00 O ATOM 3244 H ASN 365 4.302 22.127 63.424 1.00 50.00 H ATOM 3245 CB ASN 365 5.377 19.576 63.684 1.00 50.00 C ATOM 3246 CG ASN 365 4.089 19.322 62.927 1.00 50.00 C ATOM 3247 OD1 ASN 365 4.098 19.137 61.711 1.00 50.00 O ATOM 3248 HD21 ASN 365 2.180 19.167 63.247 1.00 50.00 H ATOM 3249 HD22 ASN 365 3.010 19.452 64.536 1.00 50.00 H ATOM 3250 ND2 ASN 365 2.973 19.312 63.648 1.00 50.00 N ATOM 3251 N LEU 366 7.107 20.714 61.292 1.00 50.00 N ATOM 3252 CA LEU 366 7.356 21.091 59.932 1.00 50.00 C ATOM 3253 C LEU 366 6.144 20.757 59.114 1.00 50.00 C ATOM 3254 O LEU 366 5.786 21.497 58.199 1.00 50.00 O ATOM 3255 H LEU 366 7.612 20.080 61.683 1.00 50.00 H ATOM 3256 CB LEU 366 8.603 20.383 59.400 1.00 50.00 C ATOM 3257 CG LEU 366 9.940 20.822 59.999 1.00 50.00 C ATOM 3258 CD1 LEU 366 11.067 19.919 59.520 1.00 50.00 C ATOM 3259 CD2 LEU 366 10.237 22.271 59.649 1.00 50.00 C ATOM 3260 N TRP 367 5.485 19.623 59.421 1.00 50.00 N ATOM 3261 CA TRP 367 4.339 19.164 58.684 1.00 50.00 C ATOM 3262 C TRP 367 3.121 20.019 58.888 1.00 50.00 C ATOM 3263 O TRP 367 2.273 20.090 58.001 1.00 50.00 O ATOM 3264 H TRP 367 5.791 19.147 60.121 1.00 50.00 H ATOM 3265 CB TRP 367 4.001 17.721 59.064 1.00 50.00 C ATOM 3266 HB2 TRP 367 3.465 17.677 59.948 1.00 50.00 H ATOM 3267 HB3 TRP 367 4.652 17.026 58.758 1.00 50.00 H ATOM 3268 CG TRP 367 2.842 17.156 58.303 1.00 50.00 C ATOM 3269 CD1 TRP 367 2.882 16.545 57.082 1.00 50.00 C ATOM 3270 HE1 TRP 367 1.408 15.720 55.902 1.00 50.00 H ATOM 3271 NE1 TRP 367 1.619 16.158 56.704 1.00 50.00 N ATOM 3272 CD2 TRP 367 1.469 17.148 58.710 1.00 50.00 C ATOM 3273 CE2 TRP 367 0.734 16.518 57.689 1.00 50.00 C ATOM 3274 CH2 TRP 367 -1.286 16.804 58.878 1.00 50.00 C ATOM 3275 CZ2 TRP 367 -0.647 16.341 57.762 1.00 50.00 C ATOM 3276 CE3 TRP 367 0.788 17.613 59.840 1.00 50.00 C ATOM 3277 CZ3 TRP 367 -0.581 17.435 59.908 1.00 50.00 C ATOM 3278 N LYS 368 2.955 20.652 60.066 1.00 50.00 N ATOM 3279 CA LYS 368 1.741 21.394 60.284 1.00 50.00 C ATOM 3280 C LYS 368 2.012 22.869 60.221 1.00 50.00 C ATOM 3281 O LYS 368 2.461 23.392 59.202 1.00 50.00 O ATOM 3282 H LYS 368 3.584 20.619 60.709 1.00 50.00 H ATOM 3283 CB LYS 368 1.121 21.021 61.632 1.00 50.00 C ATOM 3284 CD LYS 368 -1.294 21.306 61.009 1.00 50.00 C ATOM 3285 CE LYS 368 -2.616 21.954 61.384 1.00 50.00 C ATOM 3286 CG LYS 368 -0.178 21.749 61.940 1.00 50.00 C ATOM 3287 HZ1 LYS 368 -4.463 21.977 60.688 1.00 50.00 H ATOM 3288 HZ2 LYS 368 -3.816 20.698 60.449 1.00 50.00 H ATOM 3289 HZ3 LYS 368 -3.490 21.844 59.617 1.00 50.00 H ATOM 3290 NZ LYS 368 -3.706 21.581 60.440 1.00 50.00 N ATOM 3291 N LYS 369 1.679 23.578 61.319 1.00 50.00 N ATOM 3292 CA LYS 369 1.756 25.006 61.433 1.00 50.00 C ATOM 3293 C LYS 369 3.166 25.505 61.374 1.00 50.00 C ATOM 3294 O LYS 369 3.403 26.601 60.873 1.00 50.00 O ATOM 3295 H LYS 369 1.390 23.085 62.016 1.00 50.00 H ATOM 3296 CB LYS 369 1.103 25.476 62.735 1.00 50.00 C ATOM 3297 CD LYS 369 -0.989 25.809 64.079 1.00 50.00 C ATOM 3298 CE LYS 369 -2.503 25.674 64.098 1.00 50.00 C ATOM 3299 CG LYS 369 -0.408 25.320 62.763 1.00 50.00 C ATOM 3300 HZ1 LYS 369 -3.967 26.010 65.378 1.00 50.00 H ATOM 3301 HZ2 LYS 369 -2.878 26.955 65.551 1.00 50.00 H ATOM 3302 HZ3 LYS 369 -2.750 25.598 66.055 1.00 50.00 H ATOM 3303 NZ LYS 369 -3.083 26.102 65.401 1.00 50.00 N ATOM 3304 N GLY 370 4.145 24.734 61.880 1.00 50.00 N ATOM 3305 CA GLY 370 5.495 25.225 61.892 1.00 50.00 C ATOM 3306 C GLY 370 5.929 25.448 60.478 1.00 50.00 C ATOM 3307 O GLY 370 5.252 25.046 59.533 1.00 50.00 O ATOM 3308 H GLY 370 3.960 23.918 62.210 1.00 50.00 H ATOM 3309 N THR 371 7.086 26.119 60.304 1.00 50.00 N ATOM 3310 CA THR 371 7.568 26.429 58.991 1.00 50.00 C ATOM 3311 C THR 371 8.053 25.170 58.356 1.00 50.00 C ATOM 3312 O THR 371 8.318 24.175 59.030 1.00 50.00 O ATOM 3313 H THR 371 7.556 26.373 61.029 1.00 50.00 H ATOM 3314 CB THR 371 8.688 27.486 59.035 1.00 50.00 C ATOM 3315 HG1 THR 371 10.083 26.288 59.432 1.00 50.00 H ATOM 3316 OG1 THR 371 9.796 26.980 59.791 1.00 50.00 O ATOM 3317 CG2 THR 371 8.190 28.761 59.696 1.00 50.00 C ATOM 3318 N ASN 372 8.160 25.185 57.013 1.00 50.00 N ATOM 3319 CA ASN 372 8.584 24.020 56.298 1.00 50.00 C ATOM 3320 C ASN 372 10.065 23.888 56.426 1.00 50.00 C ATOM 3321 O ASN 372 10.779 24.864 56.650 1.00 50.00 O ATOM 3322 H ASN 372 7.960 25.940 56.565 1.00 50.00 H ATOM 3323 CB ASN 372 8.145 24.099 54.835 1.00 50.00 C ATOM 3324 CG ASN 372 6.641 23.994 54.672 1.00 50.00 C ATOM 3325 OD1 ASN 372 6.007 23.100 55.235 1.00 50.00 O ATOM 3326 HD21 ASN 372 5.175 24.891 53.769 1.00 50.00 H ATOM 3327 HD22 ASN 372 6.565 25.544 53.506 1.00 50.00 H ATOM 3328 ND2 ASN 372 6.064 24.907 53.900 1.00 50.00 N ATOM 3329 N GLY 373 10.564 22.643 56.300 1.00 50.00 N ATOM 3330 CA GLY 373 11.967 22.418 56.470 1.00 50.00 C ATOM 3331 C GLY 373 12.572 22.097 55.146 1.00 50.00 C ATOM 3332 O GLY 373 11.982 21.398 54.321 1.00 50.00 O ATOM 3333 H GLY 373 10.017 21.954 56.110 1.00 50.00 H ATOM 3334 N TYR 374 13.804 22.602 54.947 1.00 50.00 N ATOM 3335 CA TYR 374 14.562 22.414 53.750 1.00 50.00 C ATOM 3336 C TYR 374 15.903 21.929 54.200 1.00 50.00 C ATOM 3337 O TYR 374 16.239 21.977 55.382 1.00 50.00 O ATOM 3338 H TYR 374 14.148 23.083 55.626 1.00 50.00 H ATOM 3339 CB TYR 374 14.633 23.716 52.950 1.00 50.00 C ATOM 3340 CG TYR 374 13.286 24.224 52.487 1.00 50.00 C ATOM 3341 HH TYR 374 9.240 26.087 51.832 1.00 50.00 H ATOM 3342 OH TYR 374 9.580 25.629 51.229 1.00 50.00 O ATOM 3343 CZ TYR 374 10.806 25.163 51.644 1.00 50.00 C ATOM 3344 CD1 TYR 374 12.505 25.022 53.313 1.00 50.00 C ATOM 3345 CE1 TYR 374 11.273 25.491 52.899 1.00 50.00 C ATOM 3346 CD2 TYR 374 12.800 23.903 51.226 1.00 50.00 C ATOM 3347 CE2 TYR 374 11.570 24.363 50.795 1.00 50.00 C ATOM 3348 N PRO 375 16.671 21.436 53.275 1.00 50.00 N ATOM 3349 CA PRO 375 17.994 20.983 53.596 1.00 50.00 C ATOM 3350 C PRO 375 18.852 22.137 54.007 1.00 50.00 C ATOM 3351 O PRO 375 19.857 21.928 54.685 1.00 50.00 O ATOM 3352 CB PRO 375 18.490 20.338 52.300 1.00 50.00 C ATOM 3353 CD PRO 375 16.342 21.273 51.813 1.00 50.00 C ATOM 3354 CG PRO 375 17.698 21.004 51.225 1.00 50.00 C ATOM 3355 N ILE 376 18.473 23.361 53.600 1.00 50.00 N ATOM 3356 CA ILE 376 19.236 24.543 53.877 1.00 50.00 C ATOM 3357 C ILE 376 19.284 24.784 55.350 1.00 50.00 C ATOM 3358 O ILE 376 20.315 25.194 55.881 1.00 50.00 O ATOM 3359 H ILE 376 17.705 23.420 53.136 1.00 50.00 H ATOM 3360 CB ILE 376 18.660 25.771 53.148 1.00 50.00 C ATOM 3361 CD1 ILE 376 18.074 26.646 50.826 1.00 50.00 C ATOM 3362 CG1 ILE 376 18.853 25.633 51.636 1.00 50.00 C ATOM 3363 CG2 ILE 376 19.282 27.051 53.684 1.00 50.00 C ATOM 3364 N PHE 377 18.171 24.527 56.059 1.00 50.00 N ATOM 3365 CA PHE 377 18.120 24.880 57.446 1.00 50.00 C ATOM 3366 C PHE 377 19.230 24.237 58.213 1.00 50.00 C ATOM 3367 O PHE 377 19.907 24.919 58.980 1.00 50.00 O ATOM 3368 H PHE 377 17.460 24.135 55.669 1.00 50.00 H ATOM 3369 CB PHE 377 16.771 24.487 58.051 1.00 50.00 C ATOM 3370 CG PHE 377 16.659 24.774 59.521 1.00 50.00 C ATOM 3371 CZ PHE 377 16.454 25.298 62.243 1.00 50.00 C ATOM 3372 CD1 PHE 377 16.396 26.055 59.973 1.00 50.00 C ATOM 3373 CE1 PHE 377 16.293 26.318 61.325 1.00 50.00 C ATOM 3374 CD2 PHE 377 16.817 23.763 60.451 1.00 50.00 C ATOM 3375 CE2 PHE 377 16.714 24.026 61.804 1.00 50.00 C ATOM 3376 N GLN 378 19.476 22.926 58.045 1.00 50.00 N ATOM 3377 CA GLN 378 20.543 22.370 58.826 1.00 50.00 C ATOM 3378 C GLN 378 21.836 22.650 58.136 1.00 50.00 C ATOM 3379 O GLN 378 21.973 22.432 56.934 1.00 50.00 O ATOM 3380 H GLN 378 19.012 22.402 57.479 1.00 50.00 H ATOM 3381 CB GLN 378 20.333 20.868 59.028 1.00 50.00 C ATOM 3382 CD GLN 378 21.063 18.751 60.199 1.00 50.00 C ATOM 3383 CG GLN 378 21.365 20.213 59.931 1.00 50.00 C ATOM 3384 OE1 GLN 378 20.000 18.413 60.720 1.00 50.00 O ATOM 3385 HE21 GLN 378 21.869 16.999 59.978 1.00 50.00 H ATOM 3386 HE22 GLN 378 22.762 18.169 59.462 1.00 50.00 H ATOM 3387 NE2 GLN 378 21.999 17.879 59.841 1.00 50.00 N ATOM 3388 N TRP 379 22.824 23.166 58.894 1.00 50.00 N ATOM 3389 CA TRP 379 24.091 23.474 58.302 1.00 50.00 C ATOM 3390 C TRP 379 24.679 22.178 57.857 1.00 50.00 C ATOM 3391 O TRP 379 25.112 22.035 56.714 1.00 50.00 O ATOM 3392 H TRP 379 22.689 23.317 59.771 1.00 50.00 H ATOM 3393 CB TRP 379 24.985 24.209 59.302 1.00 50.00 C ATOM 3394 HB2 TRP 379 25.416 23.556 59.979 1.00 50.00 H ATOM 3395 HB3 TRP 379 24.723 25.152 59.510 1.00 50.00 H ATOM 3396 CG TRP 379 26.331 24.568 58.752 1.00 50.00 C ATOM 3397 CD1 TRP 379 26.660 25.699 58.062 1.00 50.00 C ATOM 3398 HE1 TRP 379 28.435 26.349 57.242 1.00 50.00 H ATOM 3399 NE1 TRP 379 27.990 25.676 57.720 1.00 50.00 N ATOM 3400 CD2 TRP 379 27.532 23.792 58.847 1.00 50.00 C ATOM 3401 CE2 TRP 379 28.546 24.513 58.192 1.00 50.00 C ATOM 3402 CH2 TRP 379 30.135 22.831 58.665 1.00 50.00 C ATOM 3403 CZ2 TRP 379 29.855 24.041 58.095 1.00 50.00 C ATOM 3404 CE3 TRP 379 27.847 22.557 59.421 1.00 50.00 C ATOM 3405 CZ3 TRP 379 29.145 22.093 59.322 1.00 50.00 C ATOM 3406 N SER 380 24.695 21.184 58.766 1.00 50.00 N ATOM 3407 CA SER 380 25.211 19.893 58.424 1.00 50.00 C ATOM 3408 C SER 380 24.082 19.128 57.821 1.00 50.00 C ATOM 3409 O SER 380 22.917 19.445 58.053 1.00 50.00 O ATOM 3410 H SER 380 24.378 21.336 59.595 1.00 50.00 H ATOM 3411 CB SER 380 25.790 19.202 59.660 1.00 50.00 C ATOM 3412 HG SER 380 25.108 18.515 61.254 1.00 50.00 H ATOM 3413 OG SER 380 24.771 18.889 60.594 1.00 50.00 O ATOM 3414 N GLU 381 24.398 18.100 57.012 1.00 50.00 N ATOM 3415 CA GLU 381 23.338 17.333 56.432 1.00 50.00 C ATOM 3416 C GLU 381 23.083 16.162 57.372 1.00 50.00 C ATOM 3417 O GLU 381 24.062 15.435 57.690 1.00 50.00 O ATOM 3418 H GLU 381 25.255 17.892 56.833 1.00 50.00 H ATOM 3419 OXT GLU 381 21.905 15.980 57.783 1.00 50.00 O ATOM 3420 CB GLU 381 23.716 16.878 55.021 1.00 50.00 C ATOM 3421 CD GLU 381 24.281 17.528 52.646 1.00 50.00 C ATOM 3422 CG GLU 381 23.930 18.017 54.038 1.00 50.00 C ATOM 3423 OE1 GLU 381 24.508 16.311 52.485 1.00 50.00 O ATOM 3424 OE2 GLU 381 24.329 18.362 51.718 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 104.28 16.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 118.52 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 102.67 16.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 111.99 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.55 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 95.09 32.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 79.05 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 98.56 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 68.18 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.29 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 72.85 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 69.21 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 68.81 55.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 108.35 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.37 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 35.98 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 18.85 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 50.37 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.94 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 3.94 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 3.94 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.10 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.10 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2614 CRMSCA SECONDARY STRUCTURE . . 7.53 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.70 26 100.0 26 CRMSCA BURIED . . . . . . . . 9.96 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.17 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.60 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.81 129 100.0 129 CRMSMC BURIED . . . . . . . . 9.95 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.72 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.78 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.13 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.46 120 100.0 120 CRMSSC BURIED . . . . . . . . 13.43 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.48 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.81 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.26 224 100.0 224 CRMSALL BURIED . . . . . . . . 10.97 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.269 0.735 0.768 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 43.046 0.760 0.789 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.663 0.747 0.777 26 100.0 26 ERRCA BURIED . . . . . . . . 40.223 0.675 0.721 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.208 0.733 0.767 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 42.910 0.756 0.785 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.553 0.744 0.775 129 100.0 129 ERRMC BURIED . . . . . . . . 40.272 0.676 0.723 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 39.741 0.664 0.715 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 39.700 0.663 0.714 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 40.531 0.688 0.733 41 100.0 41 ERRSC SURFACE . . . . . . . . 39.980 0.670 0.719 120 100.0 120 ERRSC BURIED . . . . . . . . 36.878 0.587 0.659 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.034 0.700 0.742 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 41.854 0.725 0.762 85 100.0 85 ERRALL SURFACE . . . . . . . . 41.252 0.707 0.747 224 100.0 224 ERRALL BURIED . . . . . . . . 39.404 0.654 0.707 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 2 2 27 31 31 DISTCA CA (P) 3.23 3.23 6.45 6.45 87.10 31 DISTCA CA (RMS) 0.63 0.63 1.68 1.68 7.46 DISTCA ALL (N) 1 3 7 20 175 254 254 DISTALL ALL (P) 0.39 1.18 2.76 7.87 68.90 254 DISTALL ALL (RMS) 0.63 1.34 2.09 3.58 7.64 DISTALL END of the results output