####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS065_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS065_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 352 - 367 4.87 8.96 LONGEST_CONTINUOUS_SEGMENT: 16 353 - 368 4.86 9.37 LONGEST_CONTINUOUS_SEGMENT: 16 363 - 378 4.80 13.45 LONGEST_CONTINUOUS_SEGMENT: 16 364 - 379 4.65 14.76 LONGEST_CONTINUOUS_SEGMENT: 16 365 - 380 4.59 15.77 LCS_AVERAGE: 50.88 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 370 - 379 1.91 16.63 LCS_AVERAGE: 21.96 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 371 - 378 0.88 16.10 LCS_AVERAGE: 17.27 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 11 0 3 3 8 8 9 9 10 11 13 14 15 16 17 18 19 21 23 26 27 LCS_GDT A 352 A 352 3 3 16 3 3 4 4 5 7 9 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT E 353 E 353 3 3 16 3 3 4 4 5 7 7 9 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT E 354 E 354 3 3 16 3 3 3 4 5 7 7 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT L 355 L 355 3 4 16 3 3 3 4 4 5 6 8 10 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT G 356 G 356 3 4 16 3 3 3 4 4 5 7 7 10 12 13 15 15 17 18 20 21 24 26 27 LCS_GDT N 357 N 357 3 4 16 3 3 3 4 4 5 7 9 10 12 13 15 16 18 19 20 21 24 26 27 LCS_GDT I 358 I 358 3 4 16 3 3 4 4 4 5 7 9 10 12 15 15 16 18 19 20 21 24 26 27 LCS_GDT I 359 I 359 3 3 16 3 3 4 5 5 6 7 9 10 12 13 15 16 18 19 20 21 24 26 27 LCS_GDT V 360 V 360 3 6 16 3 3 4 5 5 6 7 9 10 12 13 15 16 18 19 20 21 24 26 27 LCS_GDT A 361 A 361 5 6 16 3 4 5 5 5 6 7 9 10 12 13 15 16 18 19 20 21 24 26 27 LCS_GDT W 362 W 362 5 6 16 4 4 5 5 5 6 7 8 10 12 13 15 16 18 19 20 21 24 26 27 LCS_GDT N 363 N 363 5 6 16 4 4 5 5 5 6 7 9 10 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT P 364 P 364 5 6 16 4 4 5 5 5 7 7 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT N 365 N 365 5 8 16 4 4 5 5 7 9 9 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT L 366 L 366 7 8 16 4 6 7 8 8 9 9 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT W 367 W 367 7 8 16 4 6 7 8 8 9 9 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT K 368 K 368 7 8 16 4 6 7 8 8 9 9 10 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT K 369 K 369 7 8 16 4 6 7 8 8 9 10 11 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT G 370 G 370 7 10 16 4 6 7 8 8 9 10 11 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT T 371 T 371 8 10 16 4 6 8 8 8 9 10 11 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT N 372 N 372 8 10 16 3 6 8 8 8 9 10 11 11 13 15 15 16 18 19 20 21 24 26 27 LCS_GDT G 373 G 373 8 10 16 3 6 8 8 8 9 10 11 11 12 13 14 15 15 17 19 21 23 25 27 LCS_GDT Y 374 Y 374 8 10 16 3 6 8 8 8 9 10 11 11 12 13 14 15 15 17 19 21 24 26 27 LCS_GDT P 375 P 375 8 10 16 3 6 8 8 8 9 10 11 11 12 13 14 15 15 17 18 21 23 26 27 LCS_GDT I 376 I 376 8 10 16 3 5 8 8 8 9 10 11 11 12 13 14 15 16 17 19 21 24 26 27 LCS_GDT F 377 F 377 8 10 16 3 6 8 8 8 9 10 11 11 12 13 14 15 16 17 18 19 20 25 27 LCS_GDT Q 378 Q 378 8 10 16 3 6 8 8 8 9 10 11 11 12 13 14 15 16 17 19 21 24 26 27 LCS_GDT W 379 W 379 4 10 16 3 5 5 8 8 9 10 11 11 12 12 14 15 15 16 17 17 18 19 20 LCS_GDT S 380 S 380 4 5 16 3 5 5 6 7 7 8 9 9 11 12 13 14 14 16 17 19 19 24 27 LCS_GDT E 381 E 381 4 5 14 0 5 5 6 7 7 8 8 9 9 11 12 12 12 12 16 17 17 19 19 LCS_AVERAGE LCS_A: 30.04 ( 17.27 21.96 50.88 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 8 8 8 9 10 11 11 13 15 15 16 18 19 20 21 24 26 27 GDT PERCENT_AT 12.90 19.35 25.81 25.81 25.81 29.03 32.26 35.48 35.48 41.94 48.39 48.39 51.61 58.06 61.29 64.52 67.74 77.42 83.87 87.10 GDT RMS_LOCAL 0.15 0.54 0.88 0.88 0.88 1.45 1.91 2.49 2.49 3.46 4.06 4.00 4.21 4.85 5.09 5.32 5.49 6.35 6.68 6.81 GDT RMS_ALL_AT 11.44 10.85 16.10 16.10 16.10 16.70 16.63 16.32 16.32 9.41 8.93 9.14 9.04 8.94 8.84 8.85 8.89 8.41 8.35 8.38 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 18.979 0 0.106 0.663 19.031 0.000 0.000 LGA A 352 A 352 18.934 0 0.627 0.599 20.144 0.000 0.000 LGA E 353 E 353 22.934 0 0.598 1.059 26.032 0.000 0.000 LGA E 354 E 354 24.901 0 0.644 1.108 33.106 0.000 0.000 LGA L 355 L 355 21.599 0 0.084 0.852 23.686 0.000 0.000 LGA G 356 G 356 23.571 0 0.602 0.602 23.571 0.000 0.000 LGA N 357 N 357 25.641 0 0.599 0.763 31.498 0.000 0.000 LGA I 358 I 358 25.427 0 0.606 0.767 28.369 0.000 0.000 LGA I 359 I 359 24.964 0 0.606 0.667 29.852 0.000 0.000 LGA V 360 V 360 21.357 0 0.632 0.866 22.984 0.000 0.000 LGA A 361 A 361 25.376 0 0.725 0.675 27.343 0.000 0.000 LGA W 362 W 362 25.768 0 0.105 1.220 34.393 0.000 0.000 LGA N 363 N 363 21.021 0 0.104 0.709 22.954 0.000 0.000 LGA P 364 P 364 16.109 0 0.198 0.368 17.944 0.000 0.000 LGA N 365 N 365 14.131 0 0.685 1.159 18.740 0.000 0.000 LGA L 366 L 366 14.106 0 0.603 0.604 20.177 0.000 0.000 LGA W 367 W 367 11.427 0 0.063 0.197 15.777 0.000 0.000 LGA K 368 K 368 7.918 0 0.032 0.963 9.611 7.143 5.661 LGA K 369 K 369 4.955 0 0.057 0.775 9.920 31.786 23.122 LGA G 370 G 370 3.192 0 0.042 0.042 3.741 61.905 61.905 LGA T 371 T 371 1.834 0 0.674 1.439 6.020 75.000 55.986 LGA N 372 N 372 1.721 0 0.481 0.920 2.700 70.833 71.012 LGA G 373 G 373 1.897 0 0.089 0.089 2.135 70.833 70.833 LGA Y 374 Y 374 1.568 0 0.125 0.298 1.747 75.000 77.857 LGA P 375 P 375 2.172 0 0.042 0.406 4.965 73.095 59.592 LGA I 376 I 376 1.161 0 0.136 0.759 5.005 85.952 69.583 LGA F 377 F 377 1.165 0 0.066 0.494 4.010 81.429 70.173 LGA Q 378 Q 378 1.289 0 0.694 0.996 7.651 69.762 47.407 LGA W 379 W 379 3.492 0 0.296 1.317 7.926 40.714 32.483 LGA S 380 S 380 9.416 0 0.576 0.557 11.834 3.690 2.698 LGA E 381 E 381 14.937 0 0.549 1.369 20.365 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 8.131 8.088 9.402 24.101 20.913 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.49 36.290 32.625 0.424 LGA_LOCAL RMSD: 2.494 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.315 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.131 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.273717 * X + -0.552137 * Y + -0.787543 * Z + 16.039141 Y_new = 0.198787 * X + -0.833609 * Y + 0.515344 * Z + 57.656239 Z_new = -0.941043 * X + -0.015495 * Y + 0.337931 * Z + 54.636490 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.513464 1.225702 -0.045821 [DEG: 144.0109 70.2275 -2.6254 ] ZXZ: -2.150237 1.226079 -1.587261 [DEG: -123.1995 70.2492 -90.9434 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS065_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS065_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.49 32.625 8.13 REMARK ---------------------------------------------------------- MOLECULE T0537TS065_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2qy1 ATOM 2529 N SER 351 18.261 25.428 48.971 1.00188.65 N ATOM 2530 CA SER 351 19.470 24.994 49.615 1.00188.65 C ATOM 2531 C SER 351 20.502 24.597 48.607 1.00188.65 C ATOM 2532 O SER 351 20.215 23.844 47.678 1.00188.65 O ATOM 2533 CB SER 351 19.279 23.773 50.533 1.00188.65 C ATOM 2534 OG SER 351 18.447 24.105 51.634 1.00188.65 O ATOM 2535 N ALA 352 21.740 25.120 48.777 1.00 87.21 N ATOM 2536 CA ALA 352 22.870 24.701 47.996 1.00 87.21 C ATOM 2537 C ALA 352 24.081 25.278 48.660 1.00 87.21 C ATOM 2538 O ALA 352 24.182 26.496 48.801 1.00 87.21 O ATOM 2539 CB ALA 352 22.851 25.219 46.549 1.00 87.21 C ATOM 2540 N GLU 353 25.050 24.422 49.053 1.00 99.73 N ATOM 2541 CA GLU 353 26.221 24.918 49.720 1.00 99.73 C ATOM 2542 C GLU 353 27.246 23.828 49.762 1.00 99.73 C ATOM 2543 O GLU 353 26.918 22.643 49.704 1.00 99.73 O ATOM 2544 CB GLU 353 25.967 25.307 51.190 1.00 99.73 C ATOM 2545 CG GLU 353 25.105 26.560 51.374 1.00 99.73 C ATOM 2546 CD GLU 353 24.608 26.594 52.809 1.00 99.73 C ATOM 2547 OE1 GLU 353 24.270 25.503 53.341 1.00 99.73 O ATOM 2548 OE2 GLU 353 24.552 27.711 53.392 1.00 99.73 O ATOM 2549 N GLU 354 28.532 24.222 49.845 1.00 88.92 N ATOM 2550 CA GLU 354 29.599 23.278 50.022 1.00 88.92 C ATOM 2551 C GLU 354 29.976 23.435 51.457 1.00 88.92 C ATOM 2552 O GLU 354 30.237 24.547 51.915 1.00 88.92 O ATOM 2553 CB GLU 354 30.845 23.581 49.174 1.00 88.92 C ATOM 2554 CG GLU 354 30.614 23.408 47.673 1.00 88.92 C ATOM 2555 CD GLU 354 31.917 23.737 46.958 1.00 88.92 C ATOM 2556 OE1 GLU 354 32.887 24.139 47.653 1.00 88.92 O ATOM 2557 OE2 GLU 354 31.956 23.592 45.707 1.00 88.92 O ATOM 2558 N LEU 355 29.991 22.325 52.218 1.00217.92 N ATOM 2559 CA LEU 355 30.194 22.457 53.628 1.00217.92 C ATOM 2560 C LEU 355 31.558 22.981 53.944 1.00217.92 C ATOM 2561 O LEU 355 31.659 23.977 54.653 1.00217.92 O ATOM 2562 CB LEU 355 29.975 21.132 54.380 1.00217.92 C ATOM 2563 CG LEU 355 29.898 21.285 55.913 1.00217.92 C ATOM 2564 CD1 LEU 355 31.255 21.637 56.545 1.00217.92 C ATOM 2565 CD2 LEU 355 28.793 22.279 56.302 1.00217.92 C ATOM 2566 N GLY 356 32.622 22.342 53.407 1.00 86.58 N ATOM 2567 CA GLY 356 34.000 22.724 53.602 1.00 86.58 C ATOM 2568 C GLY 356 34.365 22.631 55.055 1.00 86.58 C ATOM 2569 O GLY 356 33.578 22.964 55.937 1.00 86.58 O ATOM 2570 N ASN 357 35.619 22.233 55.346 1.00143.97 N ATOM 2571 CA ASN 357 35.999 22.092 56.721 1.00143.97 C ATOM 2572 C ASN 357 35.868 23.429 57.368 1.00143.97 C ATOM 2573 O ASN 357 36.489 24.401 56.946 1.00143.97 O ATOM 2574 CB ASN 357 37.452 21.631 56.914 1.00143.97 C ATOM 2575 CG ASN 357 37.635 21.277 58.380 1.00143.97 C ATOM 2576 ND2 ASN 357 38.909 21.029 58.790 1.00143.97 N ATOM 2577 OD1 ASN 357 36.675 21.230 59.148 1.00143.97 O ATOM 2578 N ILE 358 35.046 23.506 58.431 1.00103.04 N ATOM 2579 CA ILE 358 34.829 24.757 59.088 1.00103.04 C ATOM 2580 C ILE 358 35.323 24.621 60.485 1.00103.04 C ATOM 2581 O ILE 358 35.127 23.593 61.131 1.00103.04 O ATOM 2582 CB ILE 358 33.381 25.138 59.183 1.00103.04 C ATOM 2583 CG1 ILE 358 32.787 25.356 57.782 1.00103.04 C ATOM 2584 CG2 ILE 358 33.270 26.359 60.109 1.00103.04 C ATOM 2585 CD1 ILE 358 33.489 26.462 56.990 1.00103.04 C ATOM 2586 N ILE 359 36.001 25.671 60.981 1.00 52.51 N ATOM 2587 CA ILE 359 36.487 25.635 62.323 1.00 52.51 C ATOM 2588 C ILE 359 35.324 25.993 63.180 1.00 52.51 C ATOM 2589 O ILE 359 34.654 27.000 62.956 1.00 52.51 O ATOM 2590 CB ILE 359 37.575 26.633 62.591 1.00 52.51 C ATOM 2591 CG1 ILE 359 38.797 26.345 61.704 1.00 52.51 C ATOM 2592 CG2 ILE 359 37.884 26.607 64.097 1.00 52.51 C ATOM 2593 CD1 ILE 359 39.820 27.481 61.688 1.00 52.51 C ATOM 2594 N VAL 360 35.044 25.153 64.187 1.00125.41 N ATOM 2595 CA VAL 360 33.916 25.425 65.019 1.00125.41 C ATOM 2596 C VAL 360 34.424 26.086 66.250 1.00125.41 C ATOM 2597 O VAL 360 35.499 25.758 66.751 1.00125.41 O ATOM 2598 CB VAL 360 33.184 24.190 65.454 1.00125.41 C ATOM 2599 CG1 VAL 360 34.127 23.344 66.327 1.00125.41 C ATOM 2600 CG2 VAL 360 31.892 24.613 66.170 1.00125.41 C ATOM 2601 N ALA 361 33.660 27.065 66.764 1.00178.52 N ATOM 2602 CA ALA 361 34.068 27.672 67.990 1.00178.52 C ATOM 2603 C ALA 361 33.863 26.610 69.000 1.00178.52 C ATOM 2604 O ALA 361 33.302 25.557 68.694 1.00178.52 O ATOM 2605 CB ALA 361 33.229 28.880 68.441 1.00178.52 C ATOM 2606 N TRP 362 34.353 26.843 70.225 1.00234.00 N ATOM 2607 CA TRP 362 34.195 25.832 71.220 1.00234.00 C ATOM 2608 C TRP 362 32.730 25.579 71.364 1.00234.00 C ATOM 2609 O TRP 362 32.283 24.436 71.281 1.00234.00 O ATOM 2610 CB TRP 362 34.745 26.251 72.595 1.00234.00 C ATOM 2611 CG TRP 362 34.069 27.464 73.189 1.00234.00 C ATOM 2612 CD1 TRP 362 33.009 27.528 74.045 1.00234.00 C ATOM 2613 CD2 TRP 362 34.458 28.819 72.919 1.00234.00 C ATOM 2614 CE2 TRP 362 33.596 29.645 73.641 1.00234.00 C ATOM 2615 CE3 TRP 362 35.450 29.334 72.135 1.00234.00 C ATOM 2616 NE1 TRP 362 32.712 28.840 74.326 1.00234.00 N ATOM 2617 CZ2 TRP 362 33.714 31.005 73.588 1.00234.00 C ATOM 2618 CZ3 TRP 362 35.568 30.706 72.085 1.00234.00 C ATOM 2619 CH2 TRP 362 34.716 31.525 72.798 1.00234.00 C ATOM 2620 N ASN 363 31.925 26.641 71.544 1.00109.71 N ATOM 2621 CA ASN 363 30.519 26.389 71.606 1.00109.71 C ATOM 2622 C ASN 363 29.984 26.785 70.274 1.00109.71 C ATOM 2623 O ASN 363 29.951 27.961 69.913 1.00109.71 O ATOM 2624 CB ASN 363 29.786 27.194 72.692 1.00109.71 C ATOM 2625 CG ASN 363 28.409 26.568 72.875 1.00109.71 C ATOM 2626 ND2 ASN 363 28.324 25.547 73.769 1.00109.71 N ATOM 2627 OD1 ASN 363 27.438 26.962 72.232 1.00109.71 O ATOM 2628 N PRO 364 29.578 25.794 69.537 1.00164.75 N ATOM 2629 CA PRO 364 29.131 25.994 68.190 1.00164.75 C ATOM 2630 C PRO 364 28.118 27.086 68.071 1.00164.75 C ATOM 2631 O PRO 364 28.327 27.975 67.249 1.00164.75 O ATOM 2632 CB PRO 364 28.555 24.649 67.751 1.00164.75 C ATOM 2633 CG PRO 364 28.030 24.052 69.071 1.00164.75 C ATOM 2634 CD PRO 364 29.000 24.601 70.132 1.00164.75 C ATOM 2635 N ASN 365 27.034 27.030 68.870 1.00109.49 N ATOM 2636 CA ASN 365 25.952 27.977 68.849 1.00109.49 C ATOM 2637 C ASN 365 24.707 27.199 69.110 1.00109.49 C ATOM 2638 O ASN 365 24.758 26.040 69.522 1.00109.49 O ATOM 2639 CB ASN 365 25.706 28.729 67.521 1.00109.49 C ATOM 2640 CG ASN 365 26.525 30.014 67.478 1.00109.49 C ATOM 2641 ND2 ASN 365 26.281 30.912 68.470 1.00109.49 N ATOM 2642 OD1 ASN 365 27.346 30.222 66.584 1.00109.49 O ATOM 2643 N LEU 366 23.543 27.844 68.891 1.00144.12 N ATOM 2644 CA LEU 366 22.290 27.164 69.040 1.00144.12 C ATOM 2645 C LEU 366 21.706 27.054 67.665 1.00144.12 C ATOM 2646 O LEU 366 21.956 27.904 66.809 1.00144.12 O ATOM 2647 CB LEU 366 21.269 27.902 69.920 1.00144.12 C ATOM 2648 CG LEU 366 19.937 27.141 70.049 1.00144.12 C ATOM 2649 CD1 LEU 366 20.146 25.772 70.722 1.00144.12 C ATOM 2650 CD2 LEU 366 18.884 27.980 70.788 1.00144.12 C ATOM 2651 N TRP 367 20.927 25.985 67.402 1.00 83.08 N ATOM 2652 CA TRP 367 20.400 25.819 66.078 1.00 83.08 C ATOM 2653 C TRP 367 18.975 25.376 66.196 1.00 83.08 C ATOM 2654 O TRP 367 18.569 24.823 67.218 1.00 83.08 O ATOM 2655 CB TRP 367 21.108 24.695 65.305 1.00 83.08 C ATOM 2656 CG TRP 367 22.601 24.882 65.205 1.00 83.08 C ATOM 2657 CD1 TRP 367 23.585 24.289 65.937 1.00 83.08 C ATOM 2658 CD2 TRP 367 23.254 25.784 64.301 1.00 83.08 C ATOM 2659 CE2 TRP 367 24.623 25.688 64.544 1.00 83.08 C ATOM 2660 CE3 TRP 367 22.752 26.632 63.356 1.00 83.08 C ATOM 2661 NE1 TRP 367 24.813 24.764 65.549 1.00 83.08 N ATOM 2662 CZ2 TRP 367 25.516 26.440 63.840 1.00 83.08 C ATOM 2663 CZ3 TRP 367 23.657 27.383 62.639 1.00 83.08 C ATOM 2664 CH2 TRP 367 25.012 27.287 62.877 1.00 83.08 C ATOM 2665 N LYS 368 18.158 25.639 65.154 1.00114.33 N ATOM 2666 CA LYS 368 16.826 25.112 65.183 1.00114.33 C ATOM 2667 C LYS 368 16.375 24.932 63.765 1.00114.33 C ATOM 2668 O LYS 368 16.870 25.595 62.854 1.00114.33 O ATOM 2669 CB LYS 368 15.803 25.974 65.941 1.00114.33 C ATOM 2670 CG LYS 368 14.615 25.139 66.426 1.00114.33 C ATOM 2671 CD LYS 368 13.775 25.801 67.519 1.00114.33 C ATOM 2672 CE LYS 368 12.790 24.837 68.181 1.00114.33 C ATOM 2673 NZ LYS 368 11.951 24.180 67.155 1.00114.33 N ATOM 2674 N LYS 369 15.429 24.000 63.536 1.00 83.73 N ATOM 2675 CA LYS 369 14.987 23.743 62.195 1.00 83.73 C ATOM 2676 C LYS 369 13.810 24.610 61.894 1.00 83.73 C ATOM 2677 O LYS 369 13.099 25.057 62.792 1.00 83.73 O ATOM 2678 CB LYS 369 14.572 22.283 61.934 1.00 83.73 C ATOM 2679 CG LYS 369 15.747 21.312 61.767 1.00 83.73 C ATOM 2680 CD LYS 369 16.547 21.046 63.043 1.00 83.73 C ATOM 2681 CE LYS 369 17.705 20.068 62.834 1.00 83.73 C ATOM 2682 NZ LYS 369 18.438 19.866 64.104 1.00 83.73 N ATOM 2683 N GLY 370 13.587 24.883 60.595 1.00 42.60 N ATOM 2684 CA GLY 370 12.480 25.706 60.225 1.00 42.60 C ATOM 2685 C GLY 370 11.440 24.799 59.669 1.00 42.60 C ATOM 2686 O GLY 370 11.757 23.780 59.058 1.00 42.60 O ATOM 2687 N THR 371 10.156 25.133 59.884 1.00108.10 N ATOM 2688 CA THR 371 9.145 24.298 59.315 1.00108.10 C ATOM 2689 C THR 371 9.036 24.707 57.888 1.00108.10 C ATOM 2690 O THR 371 9.028 25.895 57.570 1.00108.10 O ATOM 2691 CB THR 371 7.795 24.442 59.960 1.00108.10 C ATOM 2692 CG2 THR 371 7.242 25.843 59.660 1.00108.10 C ATOM 2693 OG1 THR 371 6.911 23.444 59.471 1.00108.10 O ATOM 2694 N ASN 372 8.981 23.727 56.973 1.00131.22 N ATOM 2695 CA ASN 372 8.932 24.098 55.593 1.00131.22 C ATOM 2696 C ASN 372 8.569 22.881 54.816 1.00131.22 C ATOM 2697 O ASN 372 7.420 22.697 54.423 1.00131.22 O ATOM 2698 CB ASN 372 10.283 24.603 55.059 1.00131.22 C ATOM 2699 CG ASN 372 10.043 25.241 53.699 1.00131.22 C ATOM 2700 ND2 ASN 372 10.544 26.494 53.517 1.00131.22 N ATOM 2701 OD1 ASN 372 9.418 24.647 52.821 1.00131.22 O ATOM 2702 N GLY 373 9.562 21.996 54.610 1.00210.98 N ATOM 2703 CA GLY 373 9.387 20.821 53.812 1.00210.98 C ATOM 2704 C GLY 373 10.444 20.865 52.759 1.00210.98 C ATOM 2705 O GLY 373 10.878 19.828 52.262 1.00210.98 O ATOM 2706 N TYR 374 10.895 22.078 52.393 1.00149.64 N ATOM 2707 CA TYR 374 11.981 22.173 51.469 1.00149.64 C ATOM 2708 C TYR 374 13.212 21.985 52.285 1.00149.64 C ATOM 2709 O TYR 374 13.290 22.447 53.422 1.00149.64 O ATOM 2710 CB TYR 374 12.065 23.512 50.718 1.00149.64 C ATOM 2711 CG TYR 374 10.937 23.521 49.741 1.00149.64 C ATOM 2712 CD1 TYR 374 9.662 23.860 50.130 1.00149.64 C ATOM 2713 CD2 TYR 374 11.163 23.184 48.426 1.00149.64 C ATOM 2714 CE1 TYR 374 8.630 23.862 49.220 1.00149.64 C ATOM 2715 CE2 TYR 374 10.138 23.184 47.512 1.00149.64 C ATOM 2716 CZ TYR 374 8.868 23.523 47.910 1.00149.64 C ATOM 2717 OH TYR 374 7.811 23.522 46.975 1.00149.64 O ATOM 2718 N PRO 375 14.156 21.279 51.728 1.00 82.37 N ATOM 2719 CA PRO 375 15.356 20.928 52.436 1.00 82.37 C ATOM 2720 C PRO 375 15.981 22.146 53.034 1.00 82.37 C ATOM 2721 O PRO 375 15.974 23.200 52.400 1.00 82.37 O ATOM 2722 CB PRO 375 16.270 20.291 51.392 1.00 82.37 C ATOM 2723 CG PRO 375 15.860 21.010 50.094 1.00 82.37 C ATOM 2724 CD PRO 375 14.360 21.300 50.289 1.00 82.37 C ATOM 2725 N ILE 376 16.500 22.019 54.268 1.00160.91 N ATOM 2726 CA ILE 376 17.132 23.118 54.929 1.00160.91 C ATOM 2727 C ILE 376 18.451 22.614 55.408 1.00160.91 C ATOM 2728 O ILE 376 18.590 21.435 55.734 1.00160.91 O ATOM 2729 CB ILE 376 16.401 23.605 56.148 1.00160.91 C ATOM 2730 CG1 ILE 376 16.384 22.526 57.246 1.00160.91 C ATOM 2731 CG2 ILE 376 15.000 24.063 55.708 1.00160.91 C ATOM 2732 CD1 ILE 376 15.672 21.233 56.851 1.00160.91 C ATOM 2733 N PHE 377 19.473 23.487 55.428 1.00116.91 N ATOM 2734 CA PHE 377 20.738 23.032 55.908 1.00116.91 C ATOM 2735 C PHE 377 21.178 23.943 56.998 1.00116.91 C ATOM 2736 O PHE 377 21.066 25.163 56.902 1.00116.91 O ATOM 2737 CB PHE 377 21.864 23.066 54.859 1.00116.91 C ATOM 2738 CG PHE 377 21.597 22.032 53.825 1.00116.91 C ATOM 2739 CD1 PHE 377 21.916 20.714 54.060 1.00116.91 C ATOM 2740 CD2 PHE 377 21.044 22.382 52.614 1.00116.91 C ATOM 2741 CE1 PHE 377 21.674 19.756 53.105 1.00116.91 C ATOM 2742 CE2 PHE 377 20.802 21.428 51.656 1.00116.91 C ATOM 2743 CZ PHE 377 21.117 20.113 51.901 1.00116.91 C ATOM 2744 N GLN 378 21.674 23.333 58.084 1.00105.99 N ATOM 2745 CA GLN 378 22.286 24.040 59.163 1.00105.99 C ATOM 2746 C GLN 378 23.532 23.262 59.386 1.00105.99 C ATOM 2747 O GLN 378 23.521 22.037 59.272 1.00105.99 O ATOM 2748 CB GLN 378 21.488 24.014 60.479 1.00105.99 C ATOM 2749 CG GLN 378 20.202 24.842 60.448 1.00105.99 C ATOM 2750 CD GLN 378 19.147 24.099 59.642 1.00105.99 C ATOM 2751 NE2 GLN 378 17.983 24.766 59.412 1.00105.99 N ATOM 2752 OE1 GLN 378 19.347 22.957 59.235 1.00105.99 O ATOM 2753 N TRP 379 24.662 23.918 59.683 1.00218.67 N ATOM 2754 CA TRP 379 25.792 23.058 59.831 1.00218.67 C ATOM 2755 C TRP 379 25.824 22.612 61.251 1.00218.67 C ATOM 2756 O TRP 379 26.817 22.796 61.954 1.00218.67 O ATOM 2757 CB TRP 379 27.132 23.737 59.481 1.00218.67 C ATOM 2758 CG TRP 379 27.476 24.957 60.301 1.00218.67 C ATOM 2759 CD1 TRP 379 26.842 25.481 61.390 1.00218.67 C ATOM 2760 CD2 TRP 379 28.601 25.810 60.038 1.00218.67 C ATOM 2761 CE2 TRP 379 28.591 26.817 61.003 1.00218.67 C ATOM 2762 CE3 TRP 379 29.564 25.757 59.071 1.00218.67 C ATOM 2763 NE1 TRP 379 27.507 26.602 61.826 1.00218.67 N ATOM 2764 CZ2 TRP 379 29.550 27.790 61.016 1.00218.67 C ATOM 2765 CZ3 TRP 379 30.528 26.740 59.087 1.00218.67 C ATOM 2766 CH2 TRP 379 30.521 27.735 60.042 1.00218.67 C ATOM 2767 N SER 380 24.713 21.996 61.702 1.00 94.36 N ATOM 2768 CA SER 380 24.630 21.483 63.035 1.00 94.36 C ATOM 2769 C SER 380 25.524 20.292 63.109 1.00 94.36 C ATOM 2770 O SER 380 26.322 20.148 64.035 1.00 94.36 O ATOM 2771 CB SER 380 23.210 21.019 63.404 1.00 94.36 C ATOM 2772 OG SER 380 22.314 22.122 63.361 1.00 94.36 O ATOM 2773 N GLU 381 25.420 19.414 62.096 1.00 45.07 N ATOM 2774 CA GLU 381 26.193 18.213 62.069 1.00 45.07 C ATOM 2775 C GLU 381 27.646 18.609 61.851 1.00 45.07 C ATOM 2776 O GLU 381 28.484 18.280 62.733 1.00 45.07 O ATOM 2777 CB GLU 381 25.778 17.263 60.931 1.00 45.07 C ATOM 2778 CG GLU 381 24.354 16.727 61.090 1.00 45.07 C ATOM 2779 CD GLU 381 24.039 15.845 59.891 1.00 45.07 C ATOM 2780 OE1 GLU 381 24.971 15.592 59.080 1.00 45.07 O ATOM 2781 OE2 GLU 381 22.862 15.413 59.767 1.00 45.07 O ATOM 2782 OXT GLU 381 27.939 19.242 60.801 1.00 45.07 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.07 48.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 118.24 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 88.21 48.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 104.19 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.90 53.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 72.28 56.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 83.10 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 74.45 56.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 69.57 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.02 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 76.25 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 78.51 57.1 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 82.51 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 48.56 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 30.32 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 30.70 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 19.59 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 30.32 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.22 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 88.22 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 88.22 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.13 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.13 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2623 CRMSCA SECONDARY STRUCTURE . . 6.43 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.08 26 100.0 26 CRMSCA BURIED . . . . . . . . 8.39 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.24 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.37 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.23 129 100.0 129 CRMSMC BURIED . . . . . . . . 8.34 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.55 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.84 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.14 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.48 120 100.0 120 CRMSSC BURIED . . . . . . . . 11.38 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.43 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.28 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.46 224 100.0 224 CRMSALL BURIED . . . . . . . . 9.25 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 117.777 0.867 0.879 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 123.056 0.900 0.907 11 100.0 11 ERRCA SURFACE . . . . . . . . 127.051 0.884 0.893 26 100.0 26 ERRCA BURIED . . . . . . . . 69.554 0.784 0.807 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 117.947 0.867 0.879 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 123.872 0.902 0.908 54 100.0 54 ERRMC SURFACE . . . . . . . . 126.348 0.881 0.891 129 100.0 129 ERRMC BURIED . . . . . . . . 70.825 0.789 0.811 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 121.864 0.846 0.863 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 120.998 0.841 0.858 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 137.154 0.869 0.881 41 100.0 41 ERRSC SURFACE . . . . . . . . 126.005 0.856 0.871 120 100.0 120 ERRSC BURIED . . . . . . . . 72.180 0.730 0.767 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 119.893 0.857 0.871 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 129.992 0.887 0.896 85 100.0 85 ERRALL SURFACE . . . . . . . . 126.480 0.868 0.881 224 100.0 224 ERRALL BURIED . . . . . . . . 70.708 0.772 0.799 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 2 8 27 31 31 DISTCA CA (P) 3.23 3.23 6.45 25.81 87.10 31 DISTCA CA (RMS) 0.95 0.95 1.66 3.65 7.09 DISTCA ALL (N) 3 9 20 57 178 254 254 DISTALL ALL (P) 1.18 3.54 7.87 22.44 70.08 254 DISTALL ALL (RMS) 0.87 1.41 2.13 3.67 6.73 DISTALL END of the results output