####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS060_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS060_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 352 - 375 5.00 9.34 LONGEST_CONTINUOUS_SEGMENT: 24 353 - 376 4.99 9.23 LCS_AVERAGE: 72.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.75 15.38 LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 1.81 9.33 LCS_AVERAGE: 17.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 354 - 357 0.98 17.63 LONGEST_CONTINUOUS_SEGMENT: 4 359 - 362 0.99 16.30 LONGEST_CONTINUOUS_SEGMENT: 4 368 - 371 0.50 15.19 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.78 12.56 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.68 12.35 LONGEST_CONTINUOUS_SEGMENT: 4 378 - 381 1.00 13.02 LCS_AVERAGE: 11.86 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 5 5 5 6 7 8 10 10 13 14 16 16 20 23 25 26 28 LCS_GDT A 352 A 352 3 3 24 3 3 3 4 7 9 9 10 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT E 353 E 353 3 3 24 3 3 3 5 7 9 9 10 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT E 354 E 354 4 4 24 3 3 4 4 6 6 9 11 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT L 355 L 355 4 4 24 3 4 5 5 5 8 9 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT G 356 G 356 4 4 24 3 3 4 4 4 5 6 6 11 15 16 18 21 23 24 24 25 26 27 28 LCS_GDT N 357 N 357 4 4 24 3 3 5 5 5 9 9 11 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT I 358 I 358 3 3 24 3 3 3 5 7 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT I 359 I 359 4 5 24 3 3 4 5 6 8 10 11 13 15 17 19 23 23 24 24 25 26 27 28 LCS_GDT V 360 V 360 4 5 24 3 3 4 5 5 5 10 10 11 11 11 13 14 19 19 24 25 26 27 28 LCS_GDT A 361 A 361 4 5 24 3 3 4 5 6 8 10 11 13 15 17 19 23 23 24 24 25 26 27 28 LCS_GDT W 362 W 362 4 5 24 3 3 4 6 7 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT N 363 N 363 3 5 24 3 4 4 6 7 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT P 364 P 364 3 4 24 3 4 4 6 7 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT N 365 N 365 3 4 24 3 4 4 5 5 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT L 366 L 366 3 7 24 3 3 3 5 8 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT W 367 W 367 3 7 24 3 3 4 5 8 9 11 11 11 14 17 20 23 23 24 24 25 26 27 28 LCS_GDT K 368 K 368 4 7 24 3 4 4 5 8 9 11 11 13 14 18 20 23 23 24 24 24 26 27 28 LCS_GDT K 369 K 369 4 7 24 3 4 4 4 8 8 11 11 15 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT G 370 G 370 4 7 24 3 4 4 5 8 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT T 371 T 371 4 7 24 3 4 5 5 8 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT N 372 N 372 3 7 24 3 4 5 6 8 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT G 373 G 373 4 7 24 3 4 5 6 7 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT Y 374 Y 374 4 7 24 3 3 4 6 7 9 11 12 14 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT P 375 P 375 4 7 24 3 4 4 5 7 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 LCS_GDT I 376 I 376 4 7 24 3 4 4 5 8 9 11 11 13 15 18 19 23 23 24 24 25 26 27 28 LCS_GDT F 377 F 377 4 7 18 3 4 4 5 7 9 10 10 12 13 14 16 18 20 23 24 25 26 27 28 LCS_GDT Q 378 Q 378 4 7 18 3 4 4 5 7 9 10 10 12 13 14 16 18 20 23 24 25 26 27 28 LCS_GDT W 379 W 379 4 5 18 3 3 4 4 6 8 10 10 12 13 13 15 17 17 19 20 22 24 25 27 LCS_GDT S 380 S 380 4 5 18 3 3 4 4 6 8 10 10 12 13 13 15 17 17 19 20 22 24 25 26 LCS_GDT E 381 E 381 4 5 18 3 3 4 4 6 8 10 10 12 13 13 15 17 17 18 20 22 23 23 26 LCS_AVERAGE LCS_A: 34.03 ( 11.86 17.38 72.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 8 9 11 12 16 17 18 20 23 23 24 24 25 26 27 28 GDT PERCENT_AT 9.68 12.90 16.13 19.35 25.81 29.03 35.48 38.71 51.61 54.84 58.06 64.52 74.19 74.19 77.42 77.42 80.65 83.87 87.10 90.32 GDT RMS_LOCAL 0.04 0.50 0.69 1.60 1.77 1.93 2.56 2.80 3.69 3.80 3.91 4.14 4.59 4.59 4.76 4.76 5.33 5.35 5.64 5.95 GDT RMS_ALL_AT 13.76 15.19 14.67 9.75 15.08 9.26 13.33 9.76 9.33 9.51 9.42 9.58 9.35 9.35 9.27 9.27 8.61 9.00 8.71 8.68 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 14.829 0 0.440 0.471 17.372 0.000 0.000 LGA A 352 A 352 8.873 0 0.632 0.610 10.828 3.690 4.381 LGA E 353 E 353 8.709 0 0.605 0.781 14.861 2.262 1.005 LGA E 354 E 354 7.931 0 0.619 1.319 11.084 10.357 5.450 LGA L 355 L 355 4.628 0 0.635 0.982 7.271 25.595 23.274 LGA G 356 G 356 7.721 0 0.363 0.363 9.087 9.286 9.286 LGA N 357 N 357 6.708 0 0.582 1.175 10.319 20.714 13.214 LGA I 358 I 358 3.545 0 0.606 1.607 5.481 34.524 38.214 LGA I 359 I 359 5.402 0 0.596 0.642 6.950 23.452 24.643 LGA V 360 V 360 10.005 0 0.619 0.639 14.063 1.548 0.884 LGA A 361 A 361 6.616 0 0.641 0.618 8.067 32.857 27.238 LGA W 362 W 362 1.929 0 0.537 1.004 7.081 65.595 47.347 LGA N 363 N 363 2.639 0 0.354 1.015 4.127 60.952 56.786 LGA P 364 P 364 1.180 0 0.674 0.759 3.389 71.429 67.619 LGA N 365 N 365 2.938 0 0.636 1.135 8.550 66.905 37.738 LGA L 366 L 366 2.843 0 0.585 1.403 5.769 57.262 46.905 LGA W 367 W 367 6.416 0 0.576 0.594 15.868 22.738 6.599 LGA K 368 K 368 6.055 0 0.155 1.027 6.699 19.286 18.201 LGA K 369 K 369 5.825 0 0.106 1.397 9.628 27.857 18.783 LGA G 370 G 370 3.571 0 0.203 0.203 6.156 32.262 32.262 LGA T 371 T 371 3.825 0 0.672 1.390 6.881 53.810 38.776 LGA N 372 N 372 1.264 0 0.369 0.908 7.249 72.024 50.774 LGA G 373 G 373 1.103 0 0.708 0.708 2.463 79.524 79.524 LGA Y 374 Y 374 2.729 0 0.232 1.431 10.688 62.976 35.119 LGA P 375 P 375 3.918 0 0.142 0.303 5.979 34.881 29.796 LGA I 376 I 376 6.089 0 0.179 0.367 8.868 17.143 13.095 LGA F 377 F 377 10.711 0 0.067 0.667 13.656 0.357 0.130 LGA Q 378 Q 378 13.387 0 0.689 1.192 16.966 0.000 0.000 LGA W 379 W 379 20.892 0 0.670 1.264 26.114 0.000 0.000 LGA S 380 S 380 22.103 0 0.107 0.655 24.355 0.000 0.000 LGA E 381 E 381 27.446 0 0.575 1.181 31.714 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.787 7.727 9.023 29.332 23.453 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.80 37.097 34.381 0.413 LGA_LOCAL RMSD: 2.804 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.758 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.787 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.348429 * X + 0.911174 * Y + 0.219909 * Z + 4.860114 Y_new = 0.931494 * X + 0.362744 * Y + -0.027116 * Z + -9.701032 Z_new = -0.104478 * X + 0.195396 * Y + -0.975143 * Z + 19.545153 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.928738 0.104669 2.943835 [DEG: 110.5085 5.9971 168.6693 ] ZXZ: 1.448110 2.918164 -0.491021 [DEG: 82.9706 167.1985 -28.1334 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS060_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS060_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.80 34.381 7.79 REMARK ---------------------------------------------------------- MOLECULE T0537TS060_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 6.256 28.815 51.959 1.00204.71 25 ATOM 2530 CA SER 351 5.412 27.987 51.147 1.00204.71 25 ATOM 2531 CB SER 351 4.574 28.766 50.115 1.00204.71 25 ATOM 2532 OG SER 351 5.409 29.324 49.112 1.00204.71 25 ATOM 2533 C SER 351 6.210 26.943 50.435 1.00204.71 25 ATOM 2534 O SER 351 6.203 26.872 49.208 1.00204.71 25 ATOM 2535 N ALA 352 6.934 26.100 51.195 1.00 62.40 25 ATOM 2536 CA ALA 352 7.663 25.033 50.575 1.00 62.40 25 ATOM 2537 CB ALA 352 9.078 24.836 51.145 1.00 62.40 25 ATOM 2538 C ALA 352 6.908 23.784 50.856 1.00 62.40 25 ATOM 2539 O ALA 352 6.436 23.570 51.971 1.00 62.40 25 ATOM 2540 N GLU 353 6.752 22.930 49.829 1.00 51.68 25 ATOM 2541 CA GLU 353 6.031 21.713 50.028 1.00 51.68 25 ATOM 2542 CB GLU 353 4.871 21.547 49.029 1.00 51.68 25 ATOM 2543 CG GLU 353 3.785 22.618 49.163 1.00 51.68 25 ATOM 2544 CD GLU 353 2.874 22.518 47.946 1.00 51.68 25 ATOM 2545 OE1 GLU 353 2.385 21.392 47.666 1.00 51.68 25 ATOM 2546 OE2 GLU 353 2.664 23.562 47.270 1.00 51.68 25 ATOM 2547 C GLU 353 6.987 20.595 49.773 1.00 51.68 25 ATOM 2548 O GLU 353 7.432 20.399 48.642 1.00 51.68 25 ATOM 2549 N GLU 354 7.339 19.827 50.825 1.00 61.72 25 ATOM 2550 CA GLU 354 8.203 18.712 50.576 1.00 61.72 25 ATOM 2551 CB GLU 354 9.443 18.591 51.467 1.00 61.72 25 ATOM 2552 CG GLU 354 10.246 17.352 51.058 1.00 61.72 25 ATOM 2553 CD GLU 354 11.380 17.143 52.042 1.00 61.72 25 ATOM 2554 OE1 GLU 354 11.127 17.279 53.268 1.00 61.72 25 ATOM 2555 OE2 GLU 354 12.522 16.860 51.589 1.00 61.72 25 ATOM 2556 C GLU 354 7.442 17.451 50.810 1.00 61.72 25 ATOM 2557 O GLU 354 6.751 17.302 51.818 1.00 61.72 25 ATOM 2558 N LEU 355 7.552 16.503 49.861 1.00135.93 25 ATOM 2559 CA LEU 355 6.849 15.263 50.011 1.00135.93 25 ATOM 2560 CB LEU 355 5.447 15.329 49.366 1.00135.93 25 ATOM 2561 CG LEU 355 4.517 14.130 49.629 1.00135.93 25 ATOM 2562 CD1 LEU 355 5.029 12.838 48.974 1.00135.93 25 ATOM 2563 CD2 LEU 355 4.228 13.985 51.131 1.00135.93 25 ATOM 2564 C LEU 355 7.645 14.208 49.301 1.00135.93 25 ATOM 2565 O LEU 355 8.243 14.467 48.257 1.00135.93 25 ATOM 2566 N GLY 356 7.697 12.988 49.872 1.00 30.24 25 ATOM 2567 CA GLY 356 8.324 11.887 49.197 1.00 30.24 25 ATOM 2568 C GLY 356 9.817 11.982 49.256 1.00 30.24 25 ATOM 2569 O GLY 356 10.507 11.505 48.356 1.00 30.24 25 ATOM 2570 N ASN 357 10.376 12.592 50.311 1.00 97.78 25 ATOM 2571 CA ASN 357 11.806 12.666 50.368 1.00 97.78 25 ATOM 2572 CB ASN 357 12.303 13.907 51.122 1.00 97.78 25 ATOM 2573 CG ASN 357 13.815 13.830 51.250 1.00 97.78 25 ATOM 2574 OD1 ASN 357 14.366 13.048 52.025 1.00 97.78 25 ATOM 2575 ND2 ASN 357 14.517 14.682 50.466 1.00 97.78 25 ATOM 2576 C ASN 357 12.313 11.473 51.108 1.00 97.78 25 ATOM 2577 O ASN 357 12.203 11.392 52.330 1.00 97.78 25 ATOM 2578 N ILE 358 12.877 10.498 50.368 1.00 98.15 25 ATOM 2579 CA ILE 358 13.463 9.372 51.025 1.00 98.15 25 ATOM 2580 CB ILE 358 12.751 8.073 50.781 1.00 98.15 25 ATOM 2581 CG2 ILE 358 11.324 8.218 51.332 1.00 98.15 25 ATOM 2582 CG1 ILE 358 12.795 7.675 49.300 1.00 98.15 25 ATOM 2583 CD1 ILE 358 12.364 6.227 49.059 1.00 98.15 25 ATOM 2584 C ILE 358 14.857 9.248 50.510 1.00 98.15 25 ATOM 2585 O ILE 358 15.086 9.186 49.303 1.00 98.15 25 ATOM 2586 N ILE 359 15.838 9.231 51.428 1.00 52.98 25 ATOM 2587 CA ILE 359 17.202 9.124 51.008 1.00 52.98 25 ATOM 2588 CB ILE 359 18.006 10.364 51.273 1.00 52.98 25 ATOM 2589 CG2 ILE 359 19.484 10.047 50.982 1.00 52.98 25 ATOM 2590 CG1 ILE 359 17.447 11.548 50.467 1.00 52.98 25 ATOM 2591 CD1 ILE 359 18.014 12.897 50.910 1.00 52.98 25 ATOM 2592 C ILE 359 17.840 8.032 51.804 1.00 52.98 25 ATOM 2593 O ILE 359 17.521 7.842 52.976 1.00 52.98 25 ATOM 2594 N VAL 360 18.745 7.261 51.169 1.00 91.22 25 ATOM 2595 CA VAL 360 19.457 6.244 51.886 1.00 91.22 25 ATOM 2596 CB VAL 360 19.521 4.937 51.151 1.00 91.22 25 ATOM 2597 CG1 VAL 360 20.430 3.978 51.937 1.00 91.22 25 ATOM 2598 CG2 VAL 360 18.092 4.414 50.923 1.00 91.22 25 ATOM 2599 C VAL 360 20.859 6.735 52.002 1.00 91.22 26 ATOM 2600 O VAL 360 21.570 6.785 50.996 1.00 91.22 26 ATOM 2601 N ALA 361 21.262 7.108 53.238 1.00325.38 26 ATOM 2602 CA ALA 361 22.549 7.656 53.580 1.00325.38 26 ATOM 2603 CB ALA 361 23.424 8.157 52.425 1.00325.38 26 ATOM 2604 C ALA 361 22.223 8.869 54.368 1.00325.38 26 ATOM 2605 O ALA 361 21.223 8.899 55.081 1.00325.38 26 ATOM 2606 N TRP 362 23.054 9.920 54.216 1.00369.16 26 ATOM 2607 CA TRP 362 22.782 11.152 54.884 1.00369.16 26 ATOM 2608 CB TRP 362 21.560 11.873 54.284 1.00369.16 26 ATOM 2609 CG TRP 362 21.104 13.140 54.972 1.00369.16 26 ATOM 2610 CD2 TRP 362 20.294 14.127 54.316 1.00369.16 26 ATOM 2611 CD1 TRP 362 21.310 13.595 56.243 1.00369.16 26 ATOM 2612 NE1 TRP 362 20.662 14.792 56.426 1.00369.16 26 ATOM 2613 CE2 TRP 362 20.037 15.136 55.248 1.00369.16 26 ATOM 2614 CE3 TRP 362 19.803 14.184 53.046 1.00369.16 26 ATOM 2615 CZ2 TRP 362 19.276 16.218 54.916 1.00369.16 26 ATOM 2616 CZ3 TRP 362 19.043 15.284 52.714 1.00369.16 26 ATOM 2617 CH2 TRP 362 18.784 16.280 53.631 1.00369.16 26 ATOM 2618 C TRP 362 22.562 10.926 56.340 1.00369.16 26 ATOM 2619 O TRP 362 21.435 10.922 56.833 1.00369.16 26 ATOM 2620 N ASN 363 23.676 10.698 57.057 1.00165.17 26 ATOM 2621 CA ASN 363 23.664 10.588 58.486 1.00165.17 26 ATOM 2622 CB ASN 363 25.057 10.221 59.040 1.00165.17 26 ATOM 2623 CG ASN 363 26.019 11.369 58.770 1.00165.17 26 ATOM 2624 OD1 ASN 363 25.776 12.226 57.922 1.00165.17 26 ATOM 2625 ND2 ASN 363 27.160 11.377 59.509 1.00165.17 26 ATOM 2626 C ASN 363 23.252 11.956 58.957 1.00165.17 26 ATOM 2627 O ASN 363 23.244 12.864 58.124 1.00165.17 26 ATOM 2628 N PRO 364 22.898 12.153 60.223 1.00 71.46 26 ATOM 2629 CA PRO 364 22.375 13.416 60.693 1.00 71.46 26 ATOM 2630 CD PRO 364 23.493 11.400 61.319 1.00 71.46 26 ATOM 2631 CB PRO 364 22.365 13.341 62.217 1.00 71.46 26 ATOM 2632 CG PRO 364 23.504 12.356 62.522 1.00 71.46 26 ATOM 2633 C PRO 364 23.192 14.563 60.206 1.00 71.46 26 ATOM 2634 O PRO 364 24.419 14.509 60.265 1.00 71.46 26 ATOM 2635 N ASN 365 22.503 15.596 59.700 1.00124.35 26 ATOM 2636 CA ASN 365 23.161 16.685 59.057 1.00124.35 26 ATOM 2637 CB ASN 365 22.475 17.137 57.757 1.00124.35 26 ATOM 2638 CG ASN 365 21.079 17.639 58.107 1.00124.35 26 ATOM 2639 OD1 ASN 365 20.816 18.841 58.100 1.00124.35 26 ATOM 2640 ND2 ASN 365 20.154 16.694 58.425 1.00124.35 26 ATOM 2641 C ASN 365 23.180 17.860 59.969 1.00124.35 26 ATOM 2642 O ASN 365 23.111 17.735 61.193 1.00124.35 26 ATOM 2643 N LEU 366 23.300 19.049 59.354 1.00108.85 26 ATOM 2644 CA LEU 366 23.427 20.276 60.072 1.00108.85 26 ATOM 2645 CB LEU 366 23.524 21.510 59.157 1.00108.85 26 ATOM 2646 CG LEU 366 24.758 21.511 58.238 1.00108.85 26 ATOM 2647 CD1 LEU 366 24.792 22.769 57.359 1.00108.85 26 ATOM 2648 CD2 LEU 366 26.055 21.305 59.036 1.00108.85 26 ATOM 2649 C LEU 366 22.229 20.472 60.936 1.00108.85 26 ATOM 2650 O LEU 366 21.096 20.203 60.542 1.00108.85 26 ATOM 2651 N TRP 367 22.487 20.933 62.172 1.00171.91 26 ATOM 2652 CA TRP 367 21.457 21.190 63.128 1.00171.91 26 ATOM 2653 CB TRP 367 22.009 21.572 64.511 1.00171.91 26 ATOM 2654 CG TRP 367 22.692 20.426 65.221 1.00171.91 26 ATOM 2655 CD2 TRP 367 21.976 19.353 65.849 1.00171.91 26 ATOM 2656 CD1 TRP 367 24.019 20.156 65.387 1.00171.91 26 ATOM 2657 NE1 TRP 367 24.174 18.981 66.083 1.00171.91 26 ATOM 2658 CE2 TRP 367 22.925 18.474 66.373 1.00171.91 26 ATOM 2659 CE3 TRP 367 20.638 19.116 65.972 1.00171.91 26 ATOM 2660 CZ2 TRP 367 22.545 17.339 67.029 1.00171.91 26 ATOM 2661 CZ3 TRP 367 20.257 17.977 66.643 1.00171.91 26 ATOM 2662 CH2 TRP 367 21.194 17.105 67.160 1.00171.91 26 ATOM 2663 C TRP 367 20.618 22.328 62.645 1.00171.91 26 ATOM 2664 O TRP 367 19.390 22.262 62.696 1.00171.91 26 ATOM 2665 N LYS 368 21.256 23.408 62.152 1.00281.53 26 ATOM 2666 CA LYS 368 20.472 24.543 61.760 1.00281.53 26 ATOM 2667 CB LYS 368 21.174 25.903 61.950 1.00281.53 26 ATOM 2668 CG LYS 368 22.516 26.039 61.229 1.00281.53 26 ATOM 2669 CD LYS 368 23.589 25.078 61.746 1.00281.53 26 ATOM 2670 CE LYS 368 24.971 25.311 61.133 1.00281.53 26 ATOM 2671 NZ LYS 368 24.955 24.971 59.692 1.00281.53 26 ATOM 2672 C LYS 368 20.064 24.425 60.328 1.00281.53 26 ATOM 2673 O LYS 368 20.890 24.315 59.423 1.00281.53 26 ATOM 2674 N LYS 369 18.735 24.450 60.119 1.00182.13 26 ATOM 2675 CA LYS 369 18.095 24.379 58.837 1.00182.13 26 ATOM 2676 CB LYS 369 17.457 23.006 58.557 1.00182.13 26 ATOM 2677 CG LYS 369 16.386 22.619 59.586 1.00182.13 26 ATOM 2678 CD LYS 369 16.927 22.477 61.012 1.00182.13 26 ATOM 2679 CE LYS 369 15.863 22.221 62.081 1.00182.13 26 ATOM 2680 NZ LYS 369 16.505 22.042 63.405 1.00182.13 26 ATOM 2681 C LYS 369 16.963 25.356 58.924 1.00182.13 26 ATOM 2682 O LYS 369 16.582 25.740 60.028 1.00182.13 26 ATOM 2683 N GLY 370 16.400 25.818 57.782 1.00147.84 26 ATOM 2684 CA GLY 370 15.286 26.713 57.953 1.00147.84 26 ATOM 2685 C GLY 370 14.404 26.781 56.725 1.00147.84 26 ATOM 2686 O GLY 370 14.832 27.290 55.689 1.00147.84 26 ATOM 2687 N THR 371 13.148 26.255 56.842 1.00186.69 26 ATOM 2688 CA THR 371 12.056 26.318 55.895 1.00186.69 26 ATOM 2689 CB THR 371 12.345 25.638 54.591 1.00186.69 26 ATOM 2690 OG1 THR 371 11.240 25.759 53.707 1.00186.69 26 ATOM 2691 CG2 THR 371 12.679 24.171 54.862 1.00186.69 26 ATOM 2692 C THR 371 10.875 25.662 56.560 1.00186.69 26 ATOM 2693 O THR 371 11.021 24.642 57.231 1.00186.69 26 ATOM 2694 N ASN 372 9.657 26.204 56.369 1.00109.92 26 ATOM 2695 CA ASN 372 8.514 25.684 57.070 1.00109.92 26 ATOM 2696 CB ASN 372 7.222 26.421 56.680 1.00109.92 26 ATOM 2697 CG ASN 372 6.066 25.832 57.472 1.00109.92 26 ATOM 2698 OD1 ASN 372 5.007 25.540 56.921 1.00109.92 26 ATOM 2699 ND2 ASN 372 6.270 25.664 58.807 1.00109.92 27 ATOM 2700 C ASN 372 8.324 24.242 56.727 1.00109.92 27 ATOM 2701 O ASN 372 8.315 23.385 57.610 1.00109.92 27 ATOM 2702 N GLY 373 8.185 23.930 55.425 1.00101.33 27 ATOM 2703 CA GLY 373 8.011 22.560 55.041 1.00101.33 27 ATOM 2704 C GLY 373 9.376 22.015 54.802 1.00101.33 27 ATOM 2705 O GLY 373 10.335 22.762 54.651 1.00101.33 27 ATOM 2706 N TYR 374 9.501 20.692 54.662 1.00247.84 27 ATOM 2707 CA TYR 374 10.810 20.149 54.451 1.00247.84 27 ATOM 2708 CB TYR 374 11.325 20.361 53.000 1.00247.84 27 ATOM 2709 CG TYR 374 12.804 20.150 52.906 1.00247.84 27 ATOM 2710 CD1 TYR 374 13.403 18.941 53.176 1.00247.84 27 ATOM 2711 CD2 TYR 374 13.604 21.205 52.531 1.00247.84 27 ATOM 2712 CE1 TYR 374 14.767 18.791 53.084 1.00247.84 27 ATOM 2713 CE2 TYR 374 14.967 21.064 52.436 1.00247.84 27 ATOM 2714 CZ TYR 374 15.553 19.854 52.715 1.00247.84 27 ATOM 2715 OH TYR 374 16.954 19.705 52.621 1.00247.84 27 ATOM 2716 C TYR 374 11.808 20.604 55.485 1.00247.84 27 ATOM 2717 O TYR 374 12.662 21.463 55.266 1.00247.84 27 ATOM 2718 N PRO 375 11.673 20.090 56.674 1.00113.20 27 ATOM 2719 CA PRO 375 12.701 20.343 57.641 1.00113.20 27 ATOM 2720 CD PRO 375 10.375 19.931 57.312 1.00113.20 27 ATOM 2721 CB PRO 375 12.032 20.333 59.015 1.00113.20 27 ATOM 2722 CG PRO 375 10.694 19.614 58.779 1.00113.20 27 ATOM 2723 C PRO 375 13.731 19.277 57.478 1.00113.20 27 ATOM 2724 O PRO 375 13.510 18.355 56.693 1.00113.20 27 ATOM 2725 N ILE 376 14.871 19.385 58.186 1.00156.64 27 ATOM 2726 CA ILE 376 15.818 18.315 58.117 1.00156.64 27 ATOM 2727 CB ILE 376 17.014 18.500 59.007 1.00156.64 27 ATOM 2728 CG2 ILE 376 17.757 19.765 58.547 1.00156.64 27 ATOM 2729 CG1 ILE 376 16.590 18.528 60.486 1.00156.64 27 ATOM 2730 CD1 ILE 376 17.766 18.408 61.453 1.00156.64 27 ATOM 2731 C ILE 376 15.051 17.135 58.607 1.00156.64 27 ATOM 2732 O ILE 376 14.308 17.236 59.582 1.00156.64 27 ATOM 2733 N PHE 377 15.194 15.980 57.937 1.00228.04 27 ATOM 2734 CA PHE 377 14.338 14.878 58.256 1.00228.04 27 ATOM 2735 CB PHE 377 14.425 13.684 57.285 1.00228.04 27 ATOM 2736 CG PHE 377 13.630 14.078 56.091 1.00228.04 27 ATOM 2737 CD1 PHE 377 14.200 14.786 55.060 1.00228.04 27 ATOM 2738 CD2 PHE 377 12.299 13.739 56.027 1.00228.04 27 ATOM 2739 CE1 PHE 377 13.440 15.147 53.973 1.00228.04 27 ATOM 2740 CE2 PHE 377 11.532 14.096 54.946 1.00228.04 27 ATOM 2741 CZ PHE 377 12.109 14.803 53.919 1.00228.04 27 ATOM 2742 C PHE 377 14.495 14.376 59.650 1.00228.04 27 ATOM 2743 O PHE 377 15.577 14.347 60.235 1.00228.04 27 ATOM 2744 N GLN 378 13.325 14.007 60.201 1.00307.64 27 ATOM 2745 CA GLN 378 13.119 13.392 61.472 1.00307.64 27 ATOM 2746 CB GLN 378 12.644 14.349 62.575 1.00307.64 27 ATOM 2747 CG GLN 378 12.364 13.622 63.893 1.00307.64 27 ATOM 2748 CD GLN 378 11.554 14.542 64.797 1.00307.64 27 ATOM 2749 OE1 GLN 378 11.908 15.697 65.022 1.00307.64 27 ATOM 2750 NE2 GLN 378 10.414 14.015 65.322 1.00307.64 27 ATOM 2751 C GLN 378 11.964 12.484 61.221 1.00307.64 27 ATOM 2752 O GLN 378 11.287 12.617 60.202 1.00307.64 27 ATOM 2753 N TRP 379 11.716 11.514 62.116 1.00214.30 27 ATOM 2754 CA TRP 379 10.560 10.704 61.888 1.00214.30 27 ATOM 2755 CB TRP 379 10.521 9.401 62.701 1.00214.30 27 ATOM 2756 CG TRP 379 11.549 8.388 62.266 1.00214.30 27 ATOM 2757 CD2 TRP 379 11.401 7.527 61.126 1.00214.30 27 ATOM 2758 CD1 TRP 379 12.766 8.096 62.814 1.00214.30 27 ATOM 2759 NE1 TRP 379 13.382 7.107 62.085 1.00214.30 27 ATOM 2760 CE2 TRP 379 12.552 6.748 61.042 1.00214.30 27 ATOM 2761 CE3 TRP 379 10.386 7.400 60.220 1.00214.30 27 ATOM 2762 CZ2 TRP 379 12.707 5.824 60.050 1.00214.30 27 ATOM 2763 CZ3 TRP 379 10.545 6.467 59.219 1.00214.30 27 ATOM 2764 CH2 TRP 379 11.683 5.693 59.135 1.00214.30 27 ATOM 2765 C TRP 379 9.388 11.538 62.276 1.00214.30 27 ATOM 2766 O TRP 379 9.443 12.290 63.247 1.00214.30 27 ATOM 2767 N SER 380 8.287 11.440 61.510 1.00172.87 27 ATOM 2768 CA SER 380 7.151 12.255 61.812 1.00172.87 27 ATOM 2769 CB SER 380 6.788 13.246 60.696 1.00172.87 27 ATOM 2770 OG SER 380 5.651 14.013 61.066 1.00172.87 27 ATOM 2771 C SER 380 5.981 11.360 62.007 1.00172.87 27 ATOM 2772 O SER 380 6.022 10.175 61.677 1.00172.87 27 ATOM 2773 N GLU 381 4.907 11.920 62.588 1.00 48.25 27 ATOM 2774 CA GLU 381 3.707 11.180 62.822 1.00 48.25 27 ATOM 2775 CB GLU 381 2.625 12.020 63.524 1.00 48.25 27 ATOM 2776 CG GLU 381 3.041 12.467 64.928 1.00 48.25 27 ATOM 2777 CD GLU 381 1.988 13.432 65.456 1.00 48.25 27 ATOM 2778 OE1 GLU 381 0.868 13.459 64.881 1.00 48.25 27 ATOM 2779 OE2 GLU 381 2.290 14.154 66.443 1.00 48.25 27 ATOM 2780 C GLU 381 3.178 10.779 61.451 1.00 48.25 27 ATOM 2781 O GLU 381 2.899 9.567 61.250 1.00 48.25 27 ATOM 2782 OXT GLU 381 3.051 11.684 60.582 1.00 48.25 27 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 107.23 18.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 125.38 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 109.70 18.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 93.91 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.26 26.9 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 98.17 24.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 98.94 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 101.94 21.7 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 25.24 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.99 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 67.14 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 49.42 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 82.61 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 46.19 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 52.66 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 43.07 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 56.29 0.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 52.66 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.66 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 78.66 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 78.66 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.79 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.79 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2512 CRMSCA SECONDARY STRUCTURE . . 6.39 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.81 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.69 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.94 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.44 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.00 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.62 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.24 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.41 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.45 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.38 120 100.0 120 CRMSSC BURIED . . . . . . . . 8.41 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.10 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.38 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.26 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.85 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 145.359 0.881 0.891 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 119.104 0.850 0.865 11 100.0 11 ERRCA SURFACE . . . . . . . . 157.921 0.895 0.904 26 100.0 26 ERRCA BURIED . . . . . . . . 80.038 0.804 0.827 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 146.360 0.879 0.890 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 120.779 0.853 0.866 54 100.0 54 ERRMC SURFACE . . . . . . . . 158.217 0.892 0.901 129 100.0 129 ERRMC BURIED . . . . . . . . 79.862 0.811 0.832 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 164.272 0.862 0.875 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 168.439 0.859 0.873 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 149.697 0.842 0.857 41 100.0 41 ERRSC SURFACE . . . . . . . . 171.750 0.867 0.880 120 100.0 120 ERRSC BURIED . . . . . . . . 74.533 0.803 0.824 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 155.058 0.871 0.883 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 133.888 0.846 0.861 85 100.0 85 ERRALL SURFACE . . . . . . . . 165.346 0.880 0.890 224 100.0 224 ERRALL BURIED . . . . . . . . 78.248 0.808 0.829 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 11 26 31 31 DISTCA CA (P) 0.00 6.45 16.13 35.48 83.87 31 DISTCA CA (RMS) 0.00 1.15 2.25 3.27 6.49 DISTCA ALL (N) 1 10 21 69 169 254 254 DISTALL ALL (P) 0.39 3.94 8.27 27.17 66.54 254 DISTALL ALL (RMS) 0.41 1.37 2.15 3.62 6.36 DISTALL END of the results output