####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS056_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS056_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 361 - 372 4.97 24.50 LONGEST_CONTINUOUS_SEGMENT: 12 362 - 373 4.45 25.94 LONGEST_CONTINUOUS_SEGMENT: 12 363 - 374 4.71 26.68 LCS_AVERAGE: 35.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 365 - 372 1.99 29.72 LCS_AVERAGE: 18.52 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 368 - 372 0.75 29.95 LCS_AVERAGE: 12.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 9 0 3 3 3 3 3 4 5 6 6 7 7 7 8 9 12 13 13 13 13 LCS_GDT A 352 A 352 3 3 9 0 3 3 3 3 3 4 5 6 6 7 7 8 10 11 12 14 14 14 14 LCS_GDT E 353 E 353 3 3 10 0 3 3 3 3 4 4 5 6 7 7 9 11 11 13 13 14 14 14 14 LCS_GDT E 354 E 354 3 4 10 1 3 3 4 4 4 4 6 6 7 8 10 11 11 13 13 14 14 14 14 LCS_GDT L 355 L 355 3 4 10 0 3 3 4 4 4 4 6 6 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT G 356 G 356 3 4 10 1 3 3 4 4 4 5 6 7 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT N 357 N 357 3 4 10 3 3 3 4 4 4 5 7 7 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT I 358 I 358 3 4 10 3 3 3 3 4 4 5 7 7 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT I 359 I 359 3 4 10 3 3 3 3 4 4 5 7 7 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT V 360 V 360 3 4 10 3 3 3 3 4 4 5 7 7 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT A 361 A 361 3 5 12 3 3 3 3 3 5 5 7 7 8 9 10 11 11 13 13 14 14 14 14 LCS_GDT W 362 W 362 4 5 12 3 4 4 4 4 5 5 7 7 9 11 11 11 11 13 13 14 14 14 14 LCS_GDT N 363 N 363 4 5 12 3 4 4 4 4 5 5 8 10 10 11 11 11 11 13 13 14 14 14 14 LCS_GDT P 364 P 364 4 5 12 3 4 4 4 4 5 6 9 10 10 11 11 11 11 13 13 14 14 14 14 LCS_GDT N 365 N 365 4 8 12 4 4 5 6 6 7 8 9 10 10 11 11 11 11 13 13 14 14 14 14 LCS_GDT L 366 L 366 4 8 12 4 4 5 6 6 7 8 9 10 10 11 11 11 11 11 13 13 14 14 14 LCS_GDT W 367 W 367 4 8 12 4 4 5 6 6 7 8 9 10 10 11 11 11 11 11 12 12 12 13 13 LCS_GDT K 368 K 368 5 8 12 3 5 5 5 6 7 8 9 10 10 11 11 11 11 11 12 12 12 13 13 LCS_GDT K 369 K 369 5 8 12 3 5 5 6 6 7 8 9 10 10 11 11 11 11 11 12 12 12 13 13 LCS_GDT G 370 G 370 5 8 12 3 5 5 6 6 7 8 9 10 10 11 11 11 11 11 12 12 12 13 13 LCS_GDT T 371 T 371 5 8 12 4 5 5 6 6 7 8 9 10 10 11 11 11 11 11 12 12 12 13 13 LCS_GDT N 372 N 372 5 8 12 0 5 5 6 6 7 8 9 10 10 11 11 11 11 11 12 12 12 13 13 LCS_GDT G 373 G 373 4 7 12 3 4 5 5 6 7 9 9 9 9 10 10 10 11 11 12 12 12 13 13 LCS_GDT Y 374 Y 374 4 7 12 3 4 5 5 6 7 9 9 9 9 10 10 10 10 11 11 12 12 13 13 LCS_GDT P 375 P 375 4 7 11 3 4 5 5 6 7 9 9 9 9 10 10 10 10 11 11 11 12 13 13 LCS_GDT I 376 I 376 4 7 11 3 4 4 5 6 7 9 9 9 9 10 10 10 10 11 11 11 11 13 13 LCS_GDT F 377 F 377 4 7 11 3 4 5 5 6 7 9 9 9 9 10 10 10 10 11 11 11 11 13 13 LCS_GDT Q 378 Q 378 4 7 11 3 4 5 5 6 7 9 9 9 9 10 10 10 10 11 11 11 11 13 13 LCS_GDT W 379 W 379 4 7 11 3 4 4 5 6 7 9 9 9 9 10 10 10 10 11 11 11 11 13 13 LCS_GDT S 380 S 380 3 4 11 3 3 4 4 4 5 9 9 9 9 10 10 10 10 11 11 11 11 13 13 LCS_GDT E 381 E 381 3 4 11 3 3 4 4 4 5 9 9 9 9 10 10 10 10 11 11 11 11 13 13 LCS_AVERAGE LCS_A: 22.10 ( 12.07 18.52 35.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 6 7 9 9 10 10 11 11 11 11 13 13 14 14 14 14 GDT PERCENT_AT 12.90 16.13 16.13 19.35 19.35 22.58 29.03 29.03 32.26 32.26 35.48 35.48 35.48 35.48 41.94 41.94 45.16 45.16 45.16 45.16 GDT RMS_LOCAL 0.29 0.75 0.71 1.15 1.15 1.55 2.48 2.48 3.39 3.39 3.99 3.99 3.99 3.78 5.61 5.61 5.97 5.97 5.97 5.97 GDT RMS_ALL_AT 29.38 29.95 29.59 29.30 29.30 29.66 29.44 29.44 26.63 26.63 25.05 25.05 25.05 27.20 28.55 28.55 29.15 29.15 29.15 29.15 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 55.631 0 0.069 0.564 56.619 0.000 0.000 LGA A 352 A 352 55.345 0 0.637 0.615 56.217 0.000 0.000 LGA E 353 E 353 48.989 0 0.614 0.898 51.241 0.000 0.000 LGA E 354 E 354 45.156 0 0.627 1.171 46.214 0.000 0.000 LGA L 355 L 355 46.463 0 0.630 0.687 51.527 0.000 0.000 LGA G 356 G 356 43.916 0 0.612 0.612 44.467 0.000 0.000 LGA N 357 N 357 38.427 0 0.602 0.647 40.038 0.000 0.000 LGA I 358 I 358 37.215 0 0.596 0.663 39.504 0.000 0.000 LGA I 359 I 359 37.350 0 0.595 0.646 41.426 0.000 0.000 LGA V 360 V 360 32.707 0 0.635 0.642 34.064 0.000 0.000 LGA A 361 A 361 28.855 0 0.702 0.641 30.003 0.000 0.000 LGA W 362 W 362 29.104 0 0.648 0.976 31.050 0.000 0.000 LGA N 363 N 363 30.491 0 0.157 1.013 35.464 0.000 0.000 LGA P 364 P 364 26.687 0 0.703 0.782 28.567 0.000 0.000 LGA N 365 N 365 28.528 0 0.695 0.597 29.348 0.000 0.000 LGA L 366 L 366 30.247 0 0.603 1.381 36.378 0.000 0.000 LGA W 367 W 367 24.652 0 0.065 0.095 27.967 0.000 0.000 LGA K 368 K 368 21.799 0 0.132 0.634 28.888 0.000 0.000 LGA K 369 K 369 15.337 0 0.064 0.888 17.599 0.000 1.693 LGA G 370 G 370 15.082 0 0.064 0.064 15.082 0.000 0.000 LGA T 371 T 371 12.240 0 0.662 0.985 15.814 0.000 0.000 LGA N 372 N 372 7.299 0 0.728 0.849 10.856 17.262 10.774 LGA G 373 G 373 1.060 0 0.647 0.647 3.385 69.405 69.405 LGA Y 374 Y 374 0.553 0 0.191 0.249 2.830 81.786 76.071 LGA P 375 P 375 1.364 0 0.078 0.348 2.570 77.381 74.422 LGA I 376 I 376 3.506 0 0.201 1.051 7.309 55.595 36.667 LGA F 377 F 377 1.755 0 0.086 0.489 6.708 75.119 50.693 LGA Q 378 Q 378 1.948 0 0.665 0.539 5.641 60.714 47.460 LGA W 379 W 379 2.732 0 0.677 1.282 10.340 73.214 25.782 LGA S 380 S 380 3.569 0 0.084 0.085 6.062 52.024 41.111 LGA E 381 E 381 3.547 1 0.171 1.144 8.328 29.524 23.571 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 18.424 18.453 18.224 19.098 14.763 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.48 26.613 24.792 0.349 LGA_LOCAL RMSD: 2.477 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 29.438 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 18.424 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.580374 * X + 0.435504 * Y + -0.688116 * Z + -52.557251 Y_new = -0.268536 * X + -0.695376 * Y + -0.666589 * Z + -22.734346 Z_new = -0.768801 * X + 0.571654 * Y + -0.286629 * Z + 106.989365 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.433361 0.876964 2.035566 [DEG: -24.8297 50.2463 116.6294 ] ZXZ: -0.801287 1.861503 -0.931426 [DEG: -45.9104 106.6563 -53.3668 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS056_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS056_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.48 24.792 18.42 REMARK ---------------------------------------------------------- MOLECULE T0537TS056_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 -17.336 -28.029 83.194 1.00 0.00 N ATOM 2530 CA SER 351 -16.975 -26.693 82.841 1.00 0.00 C ATOM 2531 C SER 351 -15.493 -26.576 82.953 1.00 0.00 C ATOM 2532 O SER 351 -14.877 -27.113 83.874 1.00 0.00 O ATOM 2533 CB SER 351 -17.646 -25.691 83.783 1.00 0.00 C ATOM 2534 OG SER 351 -17.291 -24.360 83.448 1.00 0.00 O ATOM 2535 N ALA 352 -14.883 -25.876 81.981 1.00 0.00 N ATOM 2536 CA ALA 352 -13.477 -25.630 82.021 1.00 0.00 C ATOM 2537 C ALA 352 -13.293 -24.258 81.468 1.00 0.00 C ATOM 2538 O ALA 352 -13.969 -23.865 80.520 1.00 0.00 O ATOM 2539 CB ALA 352 -12.735 -26.658 81.180 1.00 0.00 C ATOM 2540 N GLU 353 -12.377 -23.477 82.066 1.00 0.00 N ATOM 2541 CA GLU 353 -12.150 -22.156 81.569 1.00 0.00 C ATOM 2542 C GLU 353 -10.682 -21.917 81.613 1.00 0.00 C ATOM 2543 O GLU 353 -9.998 -22.377 82.525 1.00 0.00 O ATOM 2544 CB GLU 353 -12.878 -21.126 82.435 1.00 0.00 C ATOM 2545 CG GLU 353 -14.391 -21.277 82.440 1.00 0.00 C ATOM 2546 CD GLU 353 -15.079 -20.216 83.276 1.00 0.00 C ATOM 2547 OE1 GLU 353 -14.371 -19.377 83.873 1.00 0.00 O ATOM 2548 OE2 GLU 353 -16.326 -20.223 83.336 1.00 0.00 O ATOM 2549 N GLU 354 -10.154 -21.204 80.602 1.00 0.00 N ATOM 2550 CA GLU 354 -8.756 -20.907 80.615 1.00 0.00 C ATOM 2551 C GLU 354 -8.634 -19.422 80.546 1.00 0.00 C ATOM 2552 O GLU 354 -9.159 -18.790 79.630 1.00 0.00 O ATOM 2553 CB GLU 354 -8.059 -21.555 79.417 1.00 0.00 C ATOM 2554 CG GLU 354 -6.555 -21.343 79.384 1.00 0.00 C ATOM 2555 CD GLU 354 -5.899 -22.001 78.186 1.00 0.00 C ATOM 2556 OE1 GLU 354 -6.630 -22.562 77.343 1.00 0.00 O ATOM 2557 OE2 GLU 354 -4.655 -21.956 78.090 1.00 0.00 O ATOM 2558 N LEU 355 -7.951 -18.821 81.539 1.00 0.00 N ATOM 2559 CA LEU 355 -7.784 -17.398 81.535 1.00 0.00 C ATOM 2560 C LEU 355 -6.345 -17.106 81.791 1.00 0.00 C ATOM 2561 O LEU 355 -5.646 -17.881 82.443 1.00 0.00 O ATOM 2562 CB LEU 355 -8.646 -16.754 82.623 1.00 0.00 C ATOM 2563 CG LEU 355 -10.158 -16.950 82.494 1.00 0.00 C ATOM 2564 CD1 LEU 355 -10.875 -16.416 83.725 1.00 0.00 C ATOM 2565 CD2 LEU 355 -10.693 -16.215 81.275 1.00 0.00 C ATOM 2566 N GLY 356 -5.861 -15.976 81.249 1.00 0.00 N ATOM 2567 CA GLY 356 -4.517 -15.555 81.504 1.00 0.00 C ATOM 2568 C GLY 356 -3.637 -16.122 80.445 1.00 0.00 C ATOM 2569 O GLY 356 -3.886 -17.209 79.924 1.00 0.00 O ATOM 2570 N ASN 357 -2.574 -15.373 80.101 1.00 0.00 N ATOM 2571 CA ASN 357 -1.623 -15.821 79.131 1.00 0.00 C ATOM 2572 C ASN 357 -0.468 -14.883 79.231 1.00 0.00 C ATOM 2573 O ASN 357 -0.572 -13.828 79.854 1.00 0.00 O ATOM 2574 CB ASN 357 -2.232 -15.785 77.728 1.00 0.00 C ATOM 2575 CG ASN 357 -1.608 -16.806 76.796 1.00 0.00 C ATOM 2576 OD1 ASN 357 -0.528 -17.331 77.068 1.00 0.00 O ATOM 2577 ND2 ASN 357 -2.288 -17.090 75.691 1.00 0.00 N ATOM 2578 N ILE 358 0.683 -15.253 78.642 1.00 0.00 N ATOM 2579 CA ILE 358 1.772 -14.326 78.639 1.00 0.00 C ATOM 2580 C ILE 358 1.792 -13.756 77.265 1.00 0.00 C ATOM 2581 O ILE 358 2.243 -14.400 76.319 1.00 0.00 O ATOM 2582 CB ILE 358 3.107 -15.023 78.959 1.00 0.00 C ATOM 2583 CG1 ILE 358 3.042 -15.695 80.332 1.00 0.00 C ATOM 2584 CG2 ILE 358 4.246 -14.014 78.971 1.00 0.00 C ATOM 2585 CD1 ILE 358 4.227 -16.587 80.633 1.00 0.00 C ATOM 2586 N ILE 359 1.275 -12.526 77.118 1.00 0.00 N ATOM 2587 CA ILE 359 1.245 -11.934 75.819 1.00 0.00 C ATOM 2588 C ILE 359 1.756 -10.542 75.932 1.00 0.00 C ATOM 2589 O ILE 359 1.433 -9.823 76.876 1.00 0.00 O ATOM 2590 CB ILE 359 -0.185 -11.903 75.246 1.00 0.00 C ATOM 2591 CG1 ILE 359 -0.733 -13.323 75.104 1.00 0.00 C ATOM 2592 CG2 ILE 359 -0.195 -11.242 73.876 1.00 0.00 C ATOM 2593 CD1 ILE 359 -2.207 -13.378 74.764 1.00 0.00 C ATOM 2594 N VAL 360 2.596 -10.134 74.964 1.00 0.00 N ATOM 2595 CA VAL 360 3.075 -8.787 74.968 1.00 0.00 C ATOM 2596 C VAL 360 2.400 -8.121 73.818 1.00 0.00 C ATOM 2597 O VAL 360 2.453 -8.608 72.689 1.00 0.00 O ATOM 2598 CB VAL 360 4.605 -8.731 74.803 1.00 0.00 C ATOM 2599 CG1 VAL 360 5.083 -7.287 74.760 1.00 0.00 C ATOM 2600 CG2 VAL 360 5.293 -9.431 75.963 1.00 0.00 C ATOM 2601 N ALA 361 1.730 -6.985 74.079 1.00 0.00 N ATOM 2602 CA ALA 361 1.045 -6.325 73.013 1.00 0.00 C ATOM 2603 C ALA 361 1.497 -4.907 72.994 1.00 0.00 C ATOM 2604 O ALA 361 1.851 -4.340 74.027 1.00 0.00 O ATOM 2605 CB ALA 361 -0.459 -6.386 73.230 1.00 0.00 C ATOM 2606 N TRP 362 1.512 -4.308 71.791 1.00 0.00 N ATOM 2607 CA TRP 362 1.906 -2.942 71.655 1.00 0.00 C ATOM 2608 C TRP 362 0.678 -2.174 71.305 1.00 0.00 C ATOM 2609 O TRP 362 -0.205 -2.679 70.614 1.00 0.00 O ATOM 2610 CB TRP 362 2.958 -2.794 70.554 1.00 0.00 C ATOM 2611 CG TRP 362 4.237 -3.518 70.844 1.00 0.00 C ATOM 2612 CD1 TRP 362 4.551 -4.799 70.493 1.00 0.00 C ATOM 2613 CD2 TRP 362 5.374 -3.004 71.548 1.00 0.00 C ATOM 2614 NE1 TRP 362 5.814 -5.116 70.933 1.00 0.00 N ATOM 2615 CE2 TRP 362 6.341 -4.028 71.584 1.00 0.00 C ATOM 2616 CE3 TRP 362 5.670 -1.777 72.150 1.00 0.00 C ATOM 2617 CZ2 TRP 362 7.581 -3.864 72.199 1.00 0.00 C ATOM 2618 CZ3 TRP 362 6.901 -1.618 72.758 1.00 0.00 C ATOM 2619 CH2 TRP 362 7.842 -2.653 72.780 1.00 0.00 H ATOM 2620 N ASN 363 0.582 -0.927 71.802 1.00 0.00 N ATOM 2621 CA ASN 363 -0.578 -0.139 71.522 1.00 0.00 C ATOM 2622 C ASN 363 -0.243 0.753 70.376 1.00 0.00 C ATOM 2623 O ASN 363 0.737 1.496 70.397 1.00 0.00 O ATOM 2624 CB ASN 363 -0.965 0.697 72.743 1.00 0.00 C ATOM 2625 CG ASN 363 -1.356 -0.156 73.933 1.00 0.00 C ATOM 2626 OD1 ASN 363 -2.349 -0.883 73.889 1.00 0.00 O ATOM 2627 ND2 ASN 363 -0.576 -0.068 75.004 1.00 0.00 N ATOM 2628 N PRO 364 -1.045 0.656 69.357 1.00 0.00 N ATOM 2629 CA PRO 364 -0.813 1.469 68.197 1.00 0.00 C ATOM 2630 C PRO 364 -1.243 2.878 68.429 1.00 0.00 C ATOM 2631 O PRO 364 -2.096 3.113 69.283 1.00 0.00 O ATOM 2632 CB PRO 364 -1.650 0.803 67.103 1.00 0.00 C ATOM 2633 CG PRO 364 -2.806 0.204 67.831 1.00 0.00 C ATOM 2634 CD PRO 364 -2.263 -0.295 69.141 1.00 0.00 C ATOM 2635 N ASN 365 -0.648 3.832 67.687 1.00 0.00 N ATOM 2636 CA ASN 365 -1.041 5.205 67.792 1.00 0.00 C ATOM 2637 C ASN 365 -1.429 5.622 66.413 1.00 0.00 C ATOM 2638 O ASN 365 -0.740 5.300 65.445 1.00 0.00 O ATOM 2639 CB ASN 365 0.120 6.056 68.312 1.00 0.00 C ATOM 2640 CG ASN 365 0.547 5.665 69.713 1.00 0.00 C ATOM 2641 OD1 ASN 365 -0.203 5.843 70.673 1.00 0.00 O ATOM 2642 ND2 ASN 365 1.756 5.131 69.834 1.00 0.00 N ATOM 2643 N LEU 366 -2.560 6.339 66.279 1.00 0.00 N ATOM 2644 CA LEU 366 -2.967 6.742 64.968 1.00 0.00 C ATOM 2645 C LEU 366 -2.726 8.210 64.881 1.00 0.00 C ATOM 2646 O LEU 366 -3.146 8.969 65.752 1.00 0.00 O ATOM 2647 CB LEU 366 -4.447 6.429 64.746 1.00 0.00 C ATOM 2648 CG LEU 366 -4.854 4.959 64.858 1.00 0.00 C ATOM 2649 CD1 LEU 366 -6.358 4.803 64.701 1.00 0.00 C ATOM 2650 CD2 LEU 366 -4.175 4.130 63.778 1.00 0.00 C ATOM 2651 N TRP 367 -2.015 8.648 63.828 1.00 0.00 N ATOM 2652 CA TRP 367 -1.788 10.052 63.684 1.00 0.00 C ATOM 2653 C TRP 367 -2.032 10.385 62.253 1.00 0.00 C ATOM 2654 O TRP 367 -1.843 9.551 61.370 1.00 0.00 O ATOM 2655 CB TRP 367 -0.351 10.405 64.073 1.00 0.00 C ATOM 2656 CG TRP 367 -0.024 10.099 65.503 1.00 0.00 C ATOM 2657 CD1 TRP 367 0.457 8.922 66.000 1.00 0.00 C ATOM 2658 CD2 TRP 367 -0.155 10.984 66.622 1.00 0.00 C ATOM 2659 NE1 TRP 367 0.634 9.019 67.359 1.00 0.00 N ATOM 2660 CE2 TRP 367 0.266 10.276 67.765 1.00 0.00 C ATOM 2661 CE3 TRP 367 -0.585 12.307 66.769 1.00 0.00 C ATOM 2662 CZ2 TRP 367 0.266 10.846 69.038 1.00 0.00 C ATOM 2663 CZ3 TRP 367 -0.583 12.866 68.032 1.00 0.00 C ATOM 2664 CH2 TRP 367 -0.160 12.141 69.151 1.00 0.00 H ATOM 2665 N LYS 368 -2.487 11.622 61.989 1.00 0.00 N ATOM 2666 CA LYS 368 -2.715 12.000 60.630 1.00 0.00 C ATOM 2667 C LYS 368 -1.729 13.074 60.316 1.00 0.00 C ATOM 2668 O LYS 368 -1.659 14.085 61.014 1.00 0.00 O ATOM 2669 CB LYS 368 -4.144 12.518 60.450 1.00 0.00 C ATOM 2670 CG LYS 368 -4.498 12.875 59.016 1.00 0.00 C ATOM 2671 CD LYS 368 -5.915 13.414 58.915 1.00 0.00 C ATOM 2672 CE LYS 368 -6.269 13.776 57.482 1.00 0.00 C ATOM 2673 NZ LYS 368 -7.665 14.280 57.363 1.00 0.00 N ATOM 2674 N LYS 369 -0.922 12.876 59.257 1.00 0.00 N ATOM 2675 CA LYS 369 0.007 13.907 58.906 1.00 0.00 C ATOM 2676 C LYS 369 0.352 13.772 57.461 1.00 0.00 C ATOM 2677 O LYS 369 0.210 12.706 56.863 1.00 0.00 O ATOM 2678 CB LYS 369 1.281 13.787 59.743 1.00 0.00 C ATOM 2679 CG LYS 369 2.080 12.521 59.480 1.00 0.00 C ATOM 2680 CD LYS 369 3.338 12.474 60.333 1.00 0.00 C ATOM 2681 CE LYS 369 4.128 11.200 60.082 1.00 0.00 C ATOM 2682 NZ LYS 369 5.363 11.140 60.911 1.00 0.00 N ATOM 2683 N GLY 370 0.806 14.889 56.864 1.00 0.00 N ATOM 2684 CA GLY 370 1.252 14.887 55.505 1.00 0.00 C ATOM 2685 C GLY 370 2.576 15.569 55.547 1.00 0.00 C ATOM 2686 O GLY 370 2.755 16.534 56.288 1.00 0.00 O ATOM 2687 N THR 371 3.546 15.095 54.745 1.00 0.00 N ATOM 2688 CA THR 371 4.840 15.699 54.820 1.00 0.00 C ATOM 2689 C THR 371 4.807 16.989 54.071 1.00 0.00 C ATOM 2690 O THR 371 4.110 17.127 53.067 1.00 0.00 O ATOM 2691 CB THR 371 5.923 14.791 54.206 1.00 0.00 C ATOM 2692 OG1 THR 371 5.982 13.556 54.928 1.00 0.00 O ATOM 2693 CG2 THR 371 7.285 15.467 54.274 1.00 0.00 C ATOM 2694 N ASN 372 5.557 17.983 54.579 1.00 0.00 N ATOM 2695 CA ASN 372 5.616 19.272 53.959 1.00 0.00 C ATOM 2696 C ASN 372 6.928 19.863 54.353 1.00 0.00 C ATOM 2697 O ASN 372 7.753 19.205 54.986 1.00 0.00 O ATOM 2698 CB ASN 372 4.462 20.152 54.442 1.00 0.00 C ATOM 2699 CG ASN 372 4.478 20.361 55.944 1.00 0.00 C ATOM 2700 OD1 ASN 372 5.487 20.782 56.511 1.00 0.00 O ATOM 2701 ND2 ASN 372 3.357 20.068 56.593 1.00 0.00 N ATOM 2702 N GLY 373 7.163 21.126 53.954 1.00 0.00 N ATOM 2703 CA GLY 373 8.354 21.806 54.365 1.00 0.00 C ATOM 2704 C GLY 373 9.475 21.466 53.443 1.00 0.00 C ATOM 2705 O GLY 373 9.281 20.895 52.371 1.00 0.00 O ATOM 2706 N TYR 374 10.697 21.830 53.873 1.00 0.00 N ATOM 2707 CA TYR 374 11.892 21.625 53.114 1.00 0.00 C ATOM 2708 C TYR 374 12.797 20.846 54.012 1.00 0.00 C ATOM 2709 O TYR 374 12.603 20.814 55.225 1.00 0.00 O ATOM 2710 CB TYR 374 12.519 22.966 52.729 1.00 0.00 C ATOM 2711 CG TYR 374 11.660 23.802 51.809 1.00 0.00 C ATOM 2712 CD1 TYR 374 10.754 24.722 52.322 1.00 0.00 C ATOM 2713 CD2 TYR 374 11.756 23.670 50.430 1.00 0.00 C ATOM 2714 CE1 TYR 374 9.964 25.490 51.489 1.00 0.00 C ATOM 2715 CE2 TYR 374 10.974 24.431 49.581 1.00 0.00 C ATOM 2716 CZ TYR 374 10.074 25.346 50.123 1.00 0.00 C ATOM 2717 OH TYR 374 9.288 26.110 49.291 1.00 0.00 H ATOM 2718 N PRO 375 13.767 20.188 53.447 1.00 0.00 N ATOM 2719 CA PRO 375 14.646 19.390 54.251 1.00 0.00 C ATOM 2720 C PRO 375 15.542 20.248 55.073 1.00 0.00 C ATOM 2721 O PRO 375 15.705 21.425 54.759 1.00 0.00 O ATOM 2722 CB PRO 375 15.437 18.568 53.231 1.00 0.00 C ATOM 2723 CG PRO 375 15.454 19.414 52.003 1.00 0.00 C ATOM 2724 CD PRO 375 14.124 20.114 51.959 1.00 0.00 C ATOM 2725 N ILE 376 16.122 19.671 56.142 1.00 0.00 N ATOM 2726 CA ILE 376 16.936 20.443 57.027 1.00 0.00 C ATOM 2727 C ILE 376 18.372 20.132 56.782 1.00 0.00 C ATOM 2728 O ILE 376 18.783 18.974 56.694 1.00 0.00 O ATOM 2729 CB ILE 376 16.617 20.134 58.501 1.00 0.00 C ATOM 2730 CG1 ILE 376 15.163 20.492 58.817 1.00 0.00 C ATOM 2731 CG2 ILE 376 17.521 20.937 59.422 1.00 0.00 C ATOM 2732 CD1 ILE 376 14.693 19.999 60.169 1.00 0.00 C ATOM 2733 N PHE 377 19.167 21.205 56.624 1.00 0.00 N ATOM 2734 CA PHE 377 20.582 21.111 56.461 1.00 0.00 C ATOM 2735 C PHE 377 21.113 22.252 57.263 1.00 0.00 C ATOM 2736 O PHE 377 20.359 23.147 57.641 1.00 0.00 O ATOM 2737 CB PHE 377 20.960 21.231 54.984 1.00 0.00 C ATOM 2738 CG PHE 377 20.350 20.171 54.113 1.00 0.00 C ATOM 2739 CD1 PHE 377 19.148 20.395 53.464 1.00 0.00 C ATOM 2740 CD2 PHE 377 20.977 18.949 53.943 1.00 0.00 C ATOM 2741 CE1 PHE 377 18.586 19.419 52.662 1.00 0.00 C ATOM 2742 CE2 PHE 377 20.416 17.972 53.142 1.00 0.00 C ATOM 2743 CZ PHE 377 19.226 18.203 52.503 1.00 0.00 C ATOM 2744 N GLN 378 22.422 22.253 57.567 1.00 0.00 N ATOM 2745 CA GLN 378 22.915 23.335 58.363 1.00 0.00 C ATOM 2746 C GLN 378 22.755 24.580 57.551 1.00 0.00 C ATOM 2747 O GLN 378 22.865 24.559 56.327 1.00 0.00 O ATOM 2748 CB GLN 378 24.389 23.116 58.712 1.00 0.00 C ATOM 2749 CG GLN 378 24.630 21.987 59.699 1.00 0.00 C ATOM 2750 CD GLN 378 26.096 21.828 60.055 1.00 0.00 C ATOM 2751 OE1 GLN 378 26.934 22.631 59.645 1.00 0.00 O ATOM 2752 NE2 GLN 378 26.409 20.789 60.819 1.00 0.00 N ATOM 2753 N TRP 379 22.457 25.705 58.227 1.00 0.00 N ATOM 2754 CA TRP 379 22.226 26.933 57.526 1.00 0.00 C ATOM 2755 C TRP 379 23.275 27.914 57.924 1.00 0.00 C ATOM 2756 O TRP 379 23.802 27.872 59.035 1.00 0.00 O ATOM 2757 CB TRP 379 20.847 27.498 57.874 1.00 0.00 C ATOM 2758 CG TRP 379 19.713 26.624 57.431 1.00 0.00 C ATOM 2759 CD1 TRP 379 19.184 25.563 58.107 1.00 0.00 C ATOM 2760 CD2 TRP 379 18.967 26.737 56.213 1.00 0.00 C ATOM 2761 NE1 TRP 379 18.155 25.006 57.387 1.00 0.00 N ATOM 2762 CE2 TRP 379 18.003 25.711 56.218 1.00 0.00 C ATOM 2763 CE3 TRP 379 19.021 27.605 55.118 1.00 0.00 C ATOM 2764 CZ2 TRP 379 17.099 25.529 55.172 1.00 0.00 C ATOM 2765 CZ3 TRP 379 18.124 27.422 54.084 1.00 0.00 C ATOM 2766 CH2 TRP 379 17.176 26.394 54.114 1.00 0.00 H ATOM 2767 N SER 380 23.617 28.821 56.991 1.00 0.00 N ATOM 2768 CA SER 380 24.585 29.838 57.266 1.00 0.00 C ATOM 2769 C SER 380 23.927 31.139 56.965 1.00 0.00 C ATOM 2770 O SER 380 22.981 31.199 56.182 1.00 0.00 O ATOM 2771 CB SER 380 25.825 29.649 56.390 1.00 0.00 C ATOM 2772 OG SER 380 26.465 28.417 56.670 1.00 0.00 O ATOM 2773 N GLU 381 24.398 32.223 57.609 1.00 0.00 N ATOM 2774 CA GLU 381 23.797 33.498 57.365 1.00 0.00 C ATOM 2775 C GLU 381 24.606 34.183 56.272 1.00 0.00 C ATOM 2776 O GLU 381 25.591 33.565 55.788 1.00 0.00 O ATOM 2777 CB GLU 381 23.810 34.348 58.636 1.00 0.00 C ATOM 2778 CG GLU 381 22.998 33.766 59.782 1.00 0.00 C ATOM 2779 CD GLU 381 23.192 34.526 61.079 1.00 0.00 C ATOM 2780 OE1 GLU 381 23.999 35.479 61.094 1.00 0.00 O ATOM 2781 OE2 GLU 381 22.538 34.167 62.081 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 103.17 25.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 131.34 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 102.18 24.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 107.99 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.15 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 81.72 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 63.17 62.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 84.47 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 31.23 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 59.98 63.6 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 60.48 68.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 42.02 85.7 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 60.80 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 51.10 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 31.54 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 32.00 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 9.21 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 31.54 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 2.17 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 2.17 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 2.17 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 18.42 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 18.42 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.5943 CRMSCA SECONDARY STRUCTURE . . 19.31 11 100.0 11 CRMSCA SURFACE . . . . . . . . 18.75 26 100.0 26 CRMSCA BURIED . . . . . . . . 16.66 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 18.49 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 19.18 54 100.0 54 CRMSMC SURFACE . . . . . . . . 18.77 129 100.0 129 CRMSMC BURIED . . . . . . . . 16.82 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 18.18 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 18.15 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 17.13 41 100.0 41 CRMSSC SURFACE . . . . . . . . 18.19 119 99.2 120 CRMSSC BURIED . . . . . . . . 18.17 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 18.32 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 18.24 85 100.0 85 CRMSALL SURFACE . . . . . . . . 18.46 223 99.6 224 CRMSALL BURIED . . . . . . . . 17.21 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.271 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 18.033 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 17.517 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 15.989 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.318 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 17.932 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 17.516 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 16.211 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 16.898 1.000 0.500 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 16.775 1.000 0.500 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 15.192 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 16.834 1.000 0.500 119 99.2 120 ERRSC BURIED . . . . . . . . 17.664 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.099 1.000 0.500 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 16.657 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 17.164 1.000 0.500 223 99.6 224 ERRALL BURIED . . . . . . . . 16.611 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 3 31 31 DISTCA CA (P) 0.00 0.00 0.00 0.00 9.68 31 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.95 DISTCA ALL (N) 0 1 3 7 29 253 254 DISTALL ALL (P) 0.00 0.39 1.18 2.76 11.42 254 DISTALL ALL (RMS) 0.00 1.59 2.41 3.20 7.69 DISTALL END of the results output