####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS047_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS047_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 351 - 376 4.71 7.47 LCS_AVERAGE: 78.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 360 - 370 1.81 9.74 LCS_AVERAGE: 28.30 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 353 - 358 0.96 14.05 LONGEST_CONTINUOUS_SEGMENT: 6 354 - 359 0.85 12.22 LONGEST_CONTINUOUS_SEGMENT: 6 372 - 377 0.97 15.12 LCS_AVERAGE: 16.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 5 9 26 4 5 8 8 9 10 10 13 13 14 18 22 23 25 26 26 27 29 30 30 LCS_GDT A 352 A 352 5 9 26 4 5 8 8 9 10 10 13 13 15 20 22 23 25 26 26 27 29 30 30 LCS_GDT E 353 E 353 6 9 26 4 5 8 8 9 10 10 13 13 14 20 22 23 25 26 26 27 29 30 30 LCS_GDT E 354 E 354 6 9 26 5 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT L 355 L 355 6 9 26 5 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT G 356 G 356 6 9 26 5 5 8 8 9 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT N 357 N 357 6 9 26 5 5 8 8 9 10 10 13 14 19 20 21 23 25 26 26 27 29 30 30 LCS_GDT I 358 I 358 6 9 26 5 5 8 8 9 10 12 13 16 19 20 21 23 25 26 26 27 29 30 30 LCS_GDT I 359 I 359 6 9 26 3 4 6 7 9 10 11 13 15 17 19 21 23 25 26 26 27 29 30 30 LCS_GDT V 360 V 360 3 11 26 3 4 5 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT A 361 A 361 4 11 26 3 4 4 7 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT W 362 W 362 4 11 26 3 4 4 7 11 13 14 14 16 18 20 22 23 25 26 26 27 29 30 30 LCS_GDT N 363 N 363 5 11 26 4 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT P 364 P 364 5 11 26 4 5 5 7 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT N 365 N 365 5 11 26 4 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT L 366 L 366 5 11 26 4 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT W 367 W 367 5 11 26 3 5 5 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT K 368 K 368 4 11 26 3 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT K 369 K 369 4 11 26 3 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT G 370 G 370 3 11 26 3 5 8 9 11 13 14 14 17 18 20 22 23 25 26 26 26 28 30 30 LCS_GDT T 371 T 371 3 6 26 3 3 3 5 6 9 12 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT N 372 N 372 6 7 26 4 5 6 6 6 9 12 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT G 373 G 373 6 7 26 4 5 6 6 7 8 8 12 16 19 19 22 23 25 26 26 27 29 30 30 LCS_GDT Y 374 Y 374 6 7 26 4 5 6 6 7 8 12 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT P 375 P 375 6 7 26 3 5 6 6 9 10 12 14 17 19 20 22 23 25 26 26 27 29 30 30 LCS_GDT I 376 I 376 6 7 26 4 5 6 6 6 7 8 10 13 16 18 21 23 24 26 26 27 29 30 30 LCS_GDT F 377 F 377 6 7 25 3 3 6 6 6 7 7 9 11 13 15 21 23 23 24 26 27 29 30 30 LCS_GDT Q 378 Q 378 4 7 14 3 3 4 5 5 7 7 7 9 10 10 13 15 19 20 24 26 26 27 28 LCS_GDT W 379 W 379 4 5 14 3 3 4 5 5 6 8 10 11 13 15 21 23 23 24 25 27 29 30 30 LCS_GDT S 380 S 380 4 5 14 3 3 4 5 5 7 7 10 13 14 17 21 23 23 24 26 27 29 30 30 LCS_GDT E 381 E 381 4 5 14 3 3 4 5 5 7 7 10 13 14 17 19 20 23 23 26 27 29 30 30 LCS_AVERAGE LCS_A: 41.03 ( 16.02 28.30 78.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 8 9 11 13 14 14 17 19 20 22 23 25 26 26 27 29 30 30 GDT PERCENT_AT 16.13 16.13 25.81 29.03 35.48 41.94 45.16 45.16 54.84 61.29 64.52 70.97 74.19 80.65 83.87 83.87 87.10 93.55 96.77 96.77 GDT RMS_LOCAL 0.24 0.24 1.05 1.23 1.60 1.82 2.03 2.03 3.11 3.59 3.65 3.95 4.18 4.52 4.71 4.71 5.55 5.87 6.05 6.05 GDT RMS_ALL_AT 13.27 13.27 8.94 8.98 9.32 9.42 9.40 9.40 7.83 7.33 7.86 7.95 7.82 7.70 7.47 7.47 6.38 6.33 6.33 6.33 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 9.502 0 0.083 0.570 9.502 5.000 4.365 LGA A 352 A 352 9.630 0 0.053 0.074 12.064 3.929 3.143 LGA E 353 E 353 7.714 0 0.047 1.319 8.614 14.881 11.270 LGA E 354 E 354 1.436 0 0.214 0.392 6.257 67.738 54.656 LGA L 355 L 355 1.536 0 0.026 0.186 5.618 72.976 54.881 LGA G 356 G 356 3.679 0 0.054 0.054 5.772 40.238 40.238 LGA N 357 N 357 6.284 0 0.121 0.874 8.273 16.667 16.905 LGA I 358 I 358 6.859 0 0.567 0.980 10.250 14.524 11.488 LGA I 359 I 359 6.502 0 0.600 1.581 10.666 21.071 12.500 LGA V 360 V 360 2.112 0 0.609 1.444 6.161 59.167 49.592 LGA A 361 A 361 2.620 0 0.547 0.508 3.118 64.881 61.905 LGA W 362 W 362 2.463 0 0.101 0.983 9.751 73.452 32.381 LGA N 363 N 363 0.908 0 0.317 1.107 3.812 79.405 73.512 LGA P 364 P 364 2.925 0 0.109 0.376 4.855 62.857 53.741 LGA N 365 N 365 1.381 0 0.143 0.973 4.697 83.810 64.286 LGA L 366 L 366 1.195 0 0.572 1.368 4.129 68.452 68.393 LGA W 367 W 367 2.307 0 0.081 1.325 13.207 75.238 26.020 LGA K 368 K 368 1.673 0 0.209 1.302 7.296 79.405 49.841 LGA K 369 K 369 0.781 0 0.568 1.479 4.960 82.143 62.487 LGA G 370 G 370 0.933 0 0.666 0.666 3.797 66.310 66.310 LGA T 371 T 371 7.536 0 0.632 0.953 10.647 9.881 6.531 LGA N 372 N 372 8.554 0 0.725 1.227 9.277 3.571 10.476 LGA G 373 G 373 10.232 0 0.076 0.076 10.232 0.595 0.595 LGA Y 374 Y 374 7.557 0 0.070 0.247 14.370 8.571 3.690 LGA P 375 P 375 7.380 0 0.061 0.343 8.762 6.905 7.823 LGA I 376 I 376 10.757 0 0.560 1.156 14.040 0.357 0.179 LGA F 377 F 377 15.072 0 0.612 1.220 19.594 0.000 0.000 LGA Q 378 Q 378 18.103 0 0.053 0.655 20.769 0.000 0.000 LGA W 379 W 379 17.965 0 0.594 1.463 19.920 0.000 0.000 LGA S 380 S 380 20.150 0 0.102 0.090 21.220 0.000 0.000 LGA E 381 E 381 23.727 0 0.070 0.866 28.858 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 6.304 6.123 7.830 34.904 27.329 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 14 2.03 43.548 42.645 0.657 LGA_LOCAL RMSD: 2.029 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.397 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 6.304 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.324615 * X + -0.753998 * Y + 0.571062 * Z + 8.356497 Y_new = 0.183945 * X + -0.642555 * Y + -0.743832 * Z + 10.083191 Z_new = 0.927787 * X + -0.136415 * Y + 0.347277 * Z + 48.551552 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.626051 -1.188438 -0.374295 [DEG: 150.4616 -68.0925 -21.4455 ] ZXZ: 0.654752 1.216130 1.716783 [DEG: 37.5145 69.6791 98.3644 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS047_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS047_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 14 2.03 42.645 6.30 REMARK ---------------------------------------------------------- MOLECULE T0537TS047_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT 1hg8_A ATOM 2529 N SER 351 10.130 5.984 54.963 1.00 0.00 N ATOM 2530 CA SER 351 9.510 5.625 53.717 1.00 0.00 C ATOM 2531 CB SER 351 8.039 5.212 53.899 1.00 0.00 C ATOM 2532 OG SER 351 7.462 4.865 52.651 1.00 0.00 O ATOM 2533 C SER 351 9.543 6.804 52.811 1.00 0.00 C ATOM 2534 O SER 351 9.261 7.911 53.235 1.00 0.00 O ATOM 2535 N ALA 352 9.808 6.576 51.513 1.00 0.00 N ATOM 2536 CA ALA 352 10.044 7.586 50.514 1.00 0.00 C ATOM 2537 CB ALA 352 10.244 6.994 49.109 1.00 0.00 C ATOM 2538 C ALA 352 8.895 8.532 50.437 1.00 0.00 C ATOM 2539 O ALA 352 9.062 9.713 50.140 1.00 0.00 O ATOM 2540 N GLU 353 7.683 8.036 50.670 1.00 0.00 N ATOM 2541 CA GLU 353 6.538 8.883 50.560 1.00 0.00 C ATOM 2542 CB GLU 353 5.255 8.073 50.800 1.00 0.00 C ATOM 2543 CG GLU 353 4.001 8.916 50.979 1.00 0.00 C ATOM 2544 CD GLU 353 3.937 9.263 52.455 1.00 0.00 C ATOM 2545 OE1 GLU 353 4.287 8.375 53.279 1.00 0.00 O ATOM 2546 OE2 GLU 353 3.561 10.419 52.777 1.00 0.00 O ATOM 2547 C GLU 353 6.632 9.998 51.568 1.00 0.00 C ATOM 2548 O GLU 353 6.245 11.131 51.287 1.00 0.00 O ATOM 2549 N GLU 354 7.142 9.663 52.767 1.00 0.00 N ATOM 2550 CA GLU 354 7.272 10.406 53.995 1.00 0.00 C ATOM 2551 CB GLU 354 7.496 9.478 55.198 1.00 0.00 C ATOM 2552 CG GLU 354 6.286 8.585 55.479 1.00 0.00 C ATOM 2553 CD GLU 354 6.642 7.663 56.635 1.00 0.00 C ATOM 2554 OE1 GLU 354 7.800 7.753 57.121 1.00 0.00 O ATOM 2555 OE2 GLU 354 5.764 6.858 57.047 1.00 0.00 O ATOM 2556 C GLU 354 8.359 11.459 54.026 1.00 0.00 C ATOM 2557 O GLU 354 8.504 12.143 55.028 1.00 0.00 O ATOM 2558 N LEU 355 9.247 11.592 53.035 1.00 0.00 N ATOM 2559 CA LEU 355 10.353 12.497 53.239 1.00 0.00 C ATOM 2560 CB LEU 355 11.370 12.439 52.094 1.00 0.00 C ATOM 2561 CG LEU 355 12.032 11.057 51.991 1.00 0.00 C ATOM 2562 CD1 LEU 355 13.100 11.025 50.889 1.00 0.00 C ATOM 2563 CD2 LEU 355 12.565 10.598 53.357 1.00 0.00 C ATOM 2564 C LEU 355 9.989 13.948 53.452 1.00 0.00 C ATOM 2565 O LEU 355 10.581 14.606 54.307 1.00 0.00 O ATOM 2566 N GLY 356 9.021 14.503 52.700 1.00 0.00 N ATOM 2567 CA GLY 356 8.728 15.912 52.789 1.00 0.00 C ATOM 2568 C GLY 356 8.272 16.283 54.168 1.00 0.00 C ATOM 2569 O GLY 356 8.552 17.376 54.656 1.00 0.00 O ATOM 2570 N ASN 357 7.508 15.388 54.807 1.00 0.00 N ATOM 2571 CA ASN 357 6.935 15.597 56.102 1.00 0.00 C ATOM 2572 CB ASN 357 5.891 14.530 56.467 1.00 0.00 C ATOM 2573 CG ASN 357 5.048 15.102 57.594 1.00 0.00 C ATOM 2574 OD1 ASN 357 5.225 16.254 57.983 1.00 0.00 O ATOM 2575 ND2 ASN 357 4.106 14.281 58.134 1.00 0.00 N ATOM 2576 C ASN 357 7.974 15.594 57.181 1.00 0.00 C ATOM 2577 O ASN 357 7.749 16.156 58.249 1.00 0.00 O ATOM 2578 N ILE 358 9.130 14.942 56.964 1.00 0.00 N ATOM 2579 CA ILE 358 10.050 14.806 58.053 1.00 0.00 C ATOM 2580 CB ILE 358 10.365 13.373 58.356 1.00 0.00 C ATOM 2581 CG2 ILE 358 11.270 12.838 57.240 1.00 0.00 C ATOM 2582 CG1 ILE 358 10.944 13.245 59.768 1.00 0.00 C ATOM 2583 CD1 ILE 358 9.921 13.586 60.851 1.00 0.00 C ATOM 2584 C ILE 358 11.317 15.538 57.748 1.00 0.00 C ATOM 2585 O ILE 358 11.543 15.984 56.625 1.00 0.00 O ATOM 2586 N ILE 359 12.149 15.738 58.793 1.00 0.00 N ATOM 2587 CA ILE 359 13.402 16.413 58.647 1.00 0.00 C ATOM 2588 CB ILE 359 14.212 16.491 59.909 1.00 0.00 C ATOM 2589 CG2 ILE 359 13.394 17.262 60.957 1.00 0.00 C ATOM 2590 CG1 ILE 359 14.634 15.086 60.370 1.00 0.00 C ATOM 2591 CD1 ILE 359 15.703 15.107 61.462 1.00 0.00 C ATOM 2592 C ILE 359 14.179 15.609 57.675 1.00 0.00 C ATOM 2593 O ILE 359 13.948 14.413 57.517 1.00 0.00 O ATOM 2594 N VAL 360 15.083 16.260 56.933 1.00 0.00 N ATOM 2595 CA VAL 360 15.806 15.507 55.971 1.00 0.00 C ATOM 2596 CB VAL 360 15.990 16.305 54.745 1.00 0.00 C ATOM 2597 CG1 VAL 360 14.574 16.534 54.180 1.00 0.00 C ATOM 2598 CG2 VAL 360 16.698 17.615 55.122 1.00 0.00 C ATOM 2599 C VAL 360 17.109 15.107 56.570 1.00 0.00 C ATOM 2600 O VAL 360 17.950 15.943 56.897 1.00 0.00 O ATOM 2601 N ALA 361 17.319 13.787 56.743 1.00 0.00 N ATOM 2602 CA ALA 361 18.555 13.449 57.376 1.00 0.00 C ATOM 2603 CB ALA 361 18.479 12.329 58.400 1.00 0.00 C ATOM 2604 C ALA 361 19.535 12.973 56.372 1.00 0.00 C ATOM 2605 O ALA 361 19.588 11.791 56.028 1.00 0.00 O ATOM 2606 N TRP 362 20.377 13.911 55.923 1.00 0.00 N ATOM 2607 CA TRP 362 21.438 13.591 55.027 1.00 0.00 C ATOM 2608 CB TRP 362 22.197 14.864 54.605 1.00 0.00 C ATOM 2609 CG TRP 362 23.407 14.681 53.717 1.00 0.00 C ATOM 2610 CD2 TRP 362 24.272 15.765 53.345 1.00 0.00 C ATOM 2611 CD1 TRP 362 23.926 13.558 53.139 1.00 0.00 C ATOM 2612 NE1 TRP 362 25.067 13.879 52.441 1.00 0.00 N ATOM 2613 CE2 TRP 362 25.289 15.232 52.555 1.00 0.00 C ATOM 2614 CE3 TRP 362 24.225 17.097 53.644 1.00 0.00 C ATOM 2615 CZ2 TRP 362 26.278 16.025 52.049 1.00 0.00 C ATOM 2616 CZ3 TRP 362 25.220 17.896 53.128 1.00 0.00 C ATOM 2617 CH2 TRP 362 26.228 17.370 52.346 1.00 0.00 C ATOM 2618 C TRP 362 22.383 12.715 55.788 1.00 0.00 C ATOM 2619 O TRP 362 22.771 11.644 55.319 1.00 0.00 O ATOM 2620 N ASN 363 22.741 13.163 57.012 1.00 0.00 N ATOM 2621 CA ASN 363 23.689 12.470 57.838 1.00 0.00 C ATOM 2622 CB ASN 363 25.133 12.950 57.585 1.00 0.00 C ATOM 2623 CG ASN 363 25.520 12.697 56.134 1.00 0.00 C ATOM 2624 OD1 ASN 363 25.292 11.624 55.579 1.00 0.00 O ATOM 2625 ND2 ASN 363 26.131 13.729 55.491 1.00 0.00 N ATOM 2626 C ASN 363 23.374 12.852 59.256 1.00 0.00 C ATOM 2627 O ASN 363 22.658 13.824 59.479 1.00 0.00 O ATOM 2628 N PRO 364 23.849 12.119 60.235 1.00 0.00 N ATOM 2629 CA PRO 364 23.614 12.477 61.609 1.00 0.00 C ATOM 2630 CD PRO 364 25.012 11.259 60.088 1.00 0.00 C ATOM 2631 CB PRO 364 24.407 11.463 62.427 1.00 0.00 C ATOM 2632 CG PRO 364 25.596 11.134 61.506 1.00 0.00 C ATOM 2633 C PRO 364 24.142 13.861 61.832 1.00 0.00 C ATOM 2634 O PRO 364 23.591 14.587 62.658 1.00 0.00 O ATOM 2635 N ASN 365 25.245 14.212 61.143 1.00 0.00 N ATOM 2636 CA ASN 365 25.884 15.491 61.251 1.00 0.00 C ATOM 2637 CB ASN 365 27.248 15.514 60.533 1.00 0.00 C ATOM 2638 CG ASN 365 28.008 16.773 60.926 1.00 0.00 C ATOM 2639 OD1 ASN 365 27.425 17.780 61.326 1.00 0.00 O ATOM 2640 ND2 ASN 365 29.361 16.720 60.802 1.00 0.00 N ATOM 2641 C ASN 365 25.020 16.538 60.625 1.00 0.00 C ATOM 2642 O ASN 365 24.897 17.640 61.158 1.00 0.00 O ATOM 2643 N LEU 366 24.397 16.221 59.470 1.00 0.00 N ATOM 2644 CA LEU 366 23.640 17.223 58.777 1.00 0.00 C ATOM 2645 CB LEU 366 24.167 17.468 57.357 1.00 0.00 C ATOM 2646 CG LEU 366 25.621 17.971 57.351 1.00 0.00 C ATOM 2647 CD1 LEU 366 26.124 18.207 55.921 1.00 0.00 C ATOM 2648 CD2 LEU 366 25.785 19.212 58.242 1.00 0.00 C ATOM 2649 C LEU 366 22.206 16.817 58.652 1.00 0.00 C ATOM 2650 O LEU 366 21.842 15.968 57.835 1.00 0.00 O ATOM 2651 N TRP 367 21.344 17.455 59.464 1.00 0.00 N ATOM 2652 CA TRP 367 19.941 17.213 59.371 1.00 0.00 C ATOM 2653 CB TRP 367 19.325 16.612 60.651 1.00 0.00 C ATOM 2654 CG TRP 367 19.488 17.436 61.906 1.00 0.00 C ATOM 2655 CD2 TRP 367 18.488 18.326 62.425 1.00 0.00 C ATOM 2656 CD1 TRP 367 20.532 17.473 62.785 1.00 0.00 C ATOM 2657 NE1 TRP 367 20.246 18.336 63.816 1.00 0.00 N ATOM 2658 CE2 TRP 367 18.991 18.866 63.609 1.00 0.00 C ATOM 2659 CE3 TRP 367 17.250 18.661 61.958 1.00 0.00 C ATOM 2660 CZ2 TRP 367 18.259 19.754 64.346 1.00 0.00 C ATOM 2661 CZ3 TRP 367 16.516 19.560 62.700 1.00 0.00 C ATOM 2662 CH2 TRP 367 17.012 20.096 63.871 1.00 0.00 C ATOM 2663 C TRP 367 19.335 18.548 59.103 1.00 0.00 C ATOM 2664 O TRP 367 19.708 19.540 59.728 1.00 0.00 O ATOM 2665 N LYS 368 18.401 18.615 58.135 1.00 0.00 N ATOM 2666 CA LYS 368 17.830 19.883 57.782 1.00 0.00 C ATOM 2667 CB LYS 368 17.974 20.215 56.286 1.00 0.00 C ATOM 2668 CG LYS 368 19.390 20.561 55.824 1.00 0.00 C ATOM 2669 CD LYS 368 19.922 21.866 56.415 1.00 0.00 C ATOM 2670 CE LYS 368 21.063 21.680 57.415 1.00 0.00 C ATOM 2671 NZ LYS 368 22.366 21.713 56.716 1.00 0.00 N ATOM 2672 C LYS 368 16.356 19.850 58.020 1.00 0.00 C ATOM 2673 O LYS 368 15.621 19.190 57.287 1.00 0.00 O ATOM 2674 N LYS 369 15.886 20.516 59.093 1.00 0.00 N ATOM 2675 CA LYS 369 14.469 20.644 59.268 1.00 0.00 C ATOM 2676 CB LYS 369 14.092 21.140 60.676 1.00 0.00 C ATOM 2677 CG LYS 369 12.591 21.376 60.867 1.00 0.00 C ATOM 2678 CD LYS 369 11.739 20.106 60.825 1.00 0.00 C ATOM 2679 CE LYS 369 10.244 20.376 61.014 1.00 0.00 C ATOM 2680 NZ LYS 369 9.482 19.113 60.902 1.00 0.00 N ATOM 2681 C LYS 369 13.945 21.653 58.284 1.00 0.00 C ATOM 2682 O LYS 369 13.026 21.416 57.512 1.00 0.00 O ATOM 2683 N GLY 370 14.590 22.820 58.240 1.00 0.00 N ATOM 2684 CA GLY 370 14.085 23.949 57.514 1.00 0.00 C ATOM 2685 C GLY 370 14.057 23.795 56.031 1.00 0.00 C ATOM 2686 O GLY 370 13.202 24.383 55.368 1.00 0.00 O ATOM 2687 N THR 371 14.994 23.034 55.446 1.00 0.00 N ATOM 2688 CA THR 371 15.091 23.198 54.029 1.00 0.00 C ATOM 2689 CB THR 371 16.488 23.589 53.641 1.00 0.00 C ATOM 2690 OG1 THR 371 16.875 24.736 54.384 1.00 0.00 O ATOM 2691 CG2 THR 371 16.529 23.936 52.148 1.00 0.00 C ATOM 2692 C THR 371 14.701 21.966 53.284 1.00 0.00 C ATOM 2693 O THR 371 14.740 20.843 53.787 1.00 0.00 O ATOM 2694 N ASN 372 14.266 22.195 52.033 1.00 0.00 N ATOM 2695 CA ASN 372 13.945 21.148 51.120 1.00 0.00 C ATOM 2696 CB ASN 372 12.745 21.466 50.212 1.00 0.00 C ATOM 2697 CG ASN 372 11.501 21.540 51.086 1.00 0.00 C ATOM 2698 OD1 ASN 372 11.373 20.818 52.075 1.00 0.00 O ATOM 2699 ND2 ASN 372 10.553 22.441 50.714 1.00 0.00 N ATOM 2700 C ASN 372 15.164 21.101 50.268 1.00 0.00 C ATOM 2701 O ASN 372 15.985 22.009 50.291 1.00 0.00 O ATOM 2702 N GLY 373 15.389 20.041 49.502 1.00 0.00 N ATOM 2703 CA GLY 373 16.617 20.121 48.779 1.00 0.00 C ATOM 2704 C GLY 373 17.603 19.292 49.530 1.00 0.00 C ATOM 2705 O GLY 373 18.626 18.886 48.986 1.00 0.00 O ATOM 2706 N TYR 374 17.317 19.012 50.815 1.00 0.00 N ATOM 2707 CA TYR 374 18.180 18.108 51.516 1.00 0.00 C ATOM 2708 CB TYR 374 18.482 18.517 52.969 1.00 0.00 C ATOM 2709 CG TYR 374 19.318 19.754 52.971 1.00 0.00 C ATOM 2710 CD1 TYR 374 18.747 21.000 52.836 1.00 0.00 C ATOM 2711 CD2 TYR 374 20.683 19.663 53.122 1.00 0.00 C ATOM 2712 CE1 TYR 374 19.524 22.136 52.841 1.00 0.00 C ATOM 2713 CE2 TYR 374 21.465 20.794 53.128 1.00 0.00 C ATOM 2714 CZ TYR 374 20.886 22.032 52.987 1.00 0.00 C ATOM 2715 OH TYR 374 21.693 23.189 52.995 1.00 0.00 O ATOM 2716 C TYR 374 17.394 16.839 51.538 1.00 0.00 C ATOM 2717 O TYR 374 16.301 16.811 52.092 1.00 0.00 O ATOM 2718 N PRO 375 17.847 15.823 50.855 1.00 0.00 N ATOM 2719 CA PRO 375 17.123 14.579 50.848 1.00 0.00 C ATOM 2720 CD PRO 375 18.586 16.021 49.618 1.00 0.00 C ATOM 2721 CB PRO 375 17.332 13.963 49.465 1.00 0.00 C ATOM 2722 CG PRO 375 18.613 14.636 48.949 1.00 0.00 C ATOM 2723 C PRO 375 17.544 13.664 51.945 1.00 0.00 C ATOM 2724 O PRO 375 18.744 13.456 52.133 1.00 0.00 O ATOM 2725 N ILE 376 16.582 13.070 52.663 1.00 0.00 N ATOM 2726 CA ILE 376 16.976 12.166 53.692 1.00 0.00 C ATOM 2727 CB ILE 376 15.825 11.736 54.534 1.00 0.00 C ATOM 2728 CG2 ILE 376 16.428 11.113 55.797 1.00 0.00 C ATOM 2729 CG1 ILE 376 14.929 12.924 54.877 1.00 0.00 C ATOM 2730 CD1 ILE 376 13.583 12.500 55.449 1.00 0.00 C ATOM 2731 C ILE 376 17.449 10.897 53.048 1.00 0.00 C ATOM 2732 O ILE 376 18.449 10.312 53.451 1.00 0.00 O ATOM 2733 N PHE 377 16.623 10.355 52.130 1.00 0.00 N ATOM 2734 CA PHE 377 16.910 9.109 51.466 1.00 0.00 C ATOM 2735 CB PHE 377 15.604 8.374 51.125 1.00 0.00 C ATOM 2736 CG PHE 377 15.807 6.913 51.331 1.00 0.00 C ATOM 2737 CD1 PHE 377 15.608 6.403 52.593 1.00 0.00 C ATOM 2738 CD2 PHE 377 16.175 6.057 50.319 1.00 0.00 C ATOM 2739 CE1 PHE 377 15.772 5.065 52.855 1.00 0.00 C ATOM 2740 CE2 PHE 377 16.340 4.715 50.576 1.00 0.00 C ATOM 2741 CZ PHE 377 16.140 4.215 51.842 1.00 0.00 C ATOM 2742 C PHE 377 17.670 9.277 50.181 1.00 0.00 C ATOM 2743 O PHE 377 18.597 8.529 49.862 1.00 0.00 O ATOM 2744 N GLN 378 17.266 10.301 49.407 1.00 0.00 N ATOM 2745 CA GLN 378 17.687 10.488 48.046 1.00 0.00 C ATOM 2746 CB GLN 378 16.978 11.694 47.403 1.00 0.00 C ATOM 2747 CG GLN 378 17.139 11.794 45.886 1.00 0.00 C ATOM 2748 CD GLN 378 16.193 12.885 45.397 1.00 0.00 C ATOM 2749 OE1 GLN 378 16.429 14.075 45.598 1.00 0.00 O ATOM 2750 NE2 GLN 378 15.079 12.466 44.739 1.00 0.00 N ATOM 2751 C GLN 378 19.157 10.698 47.982 1.00 0.00 C ATOM 2752 O GLN 378 19.817 10.214 47.063 1.00 0.00 O ATOM 2753 N TRP 379 19.722 11.416 48.961 1.00 0.00 N ATOM 2754 CA TRP 379 21.116 11.705 48.863 1.00 0.00 C ATOM 2755 CB TRP 379 21.566 12.789 49.856 1.00 0.00 C ATOM 2756 CG TRP 379 22.959 13.308 49.621 1.00 0.00 C ATOM 2757 CD2 TRP 379 23.254 14.501 48.879 1.00 0.00 C ATOM 2758 CD1 TRP 379 24.150 12.816 50.051 1.00 0.00 C ATOM 2759 NE1 TRP 379 25.177 13.625 49.624 1.00 0.00 N ATOM 2760 CE2 TRP 379 24.638 14.667 48.901 1.00 0.00 C ATOM 2761 CE3 TRP 379 22.437 15.385 48.237 1.00 0.00 C ATOM 2762 CZ2 TRP 379 25.229 15.727 48.277 1.00 0.00 C ATOM 2763 CZ3 TRP 379 23.035 16.452 47.606 1.00 0.00 C ATOM 2764 CH2 TRP 379 24.406 16.619 47.625 1.00 0.00 C ATOM 2765 C TRP 379 21.875 10.455 49.154 1.00 0.00 C ATOM 2766 O TRP 379 21.721 9.835 50.207 1.00 0.00 O ATOM 2767 N SER 380 22.728 10.057 48.193 1.00 0.00 N ATOM 2768 CA SER 380 23.558 8.907 48.361 1.00 0.00 C ATOM 2769 CB SER 380 23.581 7.962 47.147 1.00 0.00 C ATOM 2770 OG SER 380 22.308 7.365 46.964 1.00 0.00 O ATOM 2771 C SER 380 24.931 9.461 48.495 1.00 0.00 C ATOM 2772 O SER 380 25.206 10.564 48.023 1.00 0.00 O ATOM 2773 N GLU 381 25.825 8.716 49.166 1.00 0.00 N ATOM 2774 CA GLU 381 27.168 9.177 49.347 1.00 0.00 C ATOM 2775 CB GLU 381 27.814 9.731 48.063 1.00 0.00 C ATOM 2776 CG GLU 381 29.279 10.131 48.241 1.00 0.00 C ATOM 2777 CD GLU 381 30.115 8.864 48.145 1.00 0.00 C ATOM 2778 OE1 GLU 381 30.119 8.249 47.046 1.00 0.00 O ATOM 2779 OE2 GLU 381 30.755 8.494 49.164 1.00 0.00 O ATOM 2780 C GLU 381 27.149 10.295 50.380 1.00 0.00 C ATOM 2781 O GLU 381 26.421 11.297 50.160 1.00 0.00 O ATOM 2782 OXT GLU 381 27.869 10.163 51.405 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.75 61.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 64.60 63.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 70.02 62.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 90.12 60.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.31 23.1 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 96.04 24.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 89.50 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 95.74 26.1 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 108.61 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.59 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 79.70 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 50.48 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 75.72 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 47.23 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 33.95 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 33.01 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 19.31 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 33.95 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.71 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 64.71 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 64.71 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.30 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.30 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2033 CRMSCA SECONDARY STRUCTURE . . 5.70 11 100.0 11 CRMSCA SURFACE . . . . . . . . 6.40 26 100.0 26 CRMSCA BURIED . . . . . . . . 5.77 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.31 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.80 54 100.0 54 CRMSMC SURFACE . . . . . . . . 6.47 129 100.0 129 CRMSMC BURIED . . . . . . . . 5.36 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.25 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 9.37 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.10 41 100.0 41 CRMSSC SURFACE . . . . . . . . 9.44 120 100.0 120 CRMSSC BURIED . . . . . . . . 6.69 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.89 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.50 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.12 224 100.0 224 CRMSALL BURIED . . . . . . . . 5.84 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.864 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.400 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.039 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 4.954 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.883 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.492 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.064 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 4.871 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.526 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 8.674 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 8.210 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 8.713 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 6.283 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.153 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 6.723 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 7.398 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 5.326 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 3 13 30 31 31 DISTCA CA (P) 0.00 6.45 9.68 41.94 96.77 31 DISTCA CA (RMS) 0.00 1.52 2.08 3.85 6.07 DISTCA ALL (N) 0 4 17 74 212 254 254 DISTALL ALL (P) 0.00 1.57 6.69 29.13 83.46 254 DISTALL ALL (RMS) 0.00 1.54 2.49 3.83 6.35 DISTALL END of the results output