####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS037_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS037_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 352 - 376 4.96 8.70 LCS_AVERAGE: 72.84 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 366 - 372 1.88 15.75 LCS_AVERAGE: 17.17 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 372 - 376 0.65 9.18 LCS_AVERAGE: 12.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 3 3 3 7 7 7 8 9 10 11 14 15 16 22 22 26 27 LCS_GDT A 352 A 352 3 3 25 3 3 3 3 4 7 8 12 14 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT E 353 E 353 3 3 25 3 3 3 3 6 8 8 12 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT E 354 E 354 4 4 25 3 3 4 4 5 5 8 12 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT L 355 L 355 4 4 25 3 4 4 4 6 8 8 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT G 356 G 356 4 4 25 3 3 4 4 4 5 6 10 13 15 17 18 21 24 24 24 25 26 27 27 LCS_GDT N 357 N 357 4 4 25 3 3 4 6 7 8 11 12 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT I 358 I 358 3 4 25 3 3 4 6 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT I 359 I 359 3 5 25 3 3 5 6 6 8 8 10 13 15 18 20 22 24 24 24 25 26 27 27 LCS_GDT V 360 V 360 3 5 25 3 3 5 5 5 5 6 8 8 10 13 13 16 18 19 24 25 26 27 27 LCS_GDT A 361 A 361 3 6 25 3 3 5 5 6 8 9 11 13 15 18 20 22 24 24 24 25 26 27 27 LCS_GDT W 362 W 362 3 6 25 3 3 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT N 363 N 363 4 6 25 3 3 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT P 364 P 364 4 6 25 4 4 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT N 365 N 365 4 6 25 4 4 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT L 366 L 366 4 7 25 4 4 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT W 367 W 367 3 7 25 3 3 4 5 6 8 9 10 12 16 18 20 22 24 24 24 25 26 27 27 LCS_GDT K 368 K 368 4 7 25 3 3 4 5 6 8 9 10 12 16 18 20 22 24 24 24 25 25 27 27 LCS_GDT K 369 K 369 4 7 25 3 3 4 5 6 8 9 10 14 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT G 370 G 370 4 7 25 3 3 4 5 6 9 10 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT T 371 T 371 4 7 25 3 4 5 5 7 9 10 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT N 372 N 372 5 7 25 3 5 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT G 373 G 373 5 6 25 4 5 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT Y 374 Y 374 5 6 25 3 5 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT P 375 P 375 5 6 25 3 5 5 6 7 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 LCS_GDT I 376 I 376 5 6 25 3 5 5 6 7 9 9 11 13 17 17 19 21 24 24 24 25 26 27 27 LCS_GDT F 377 F 377 4 6 17 3 4 5 6 7 8 8 10 12 14 14 16 20 20 23 24 24 26 27 27 LCS_GDT Q 378 Q 378 4 5 12 3 4 5 5 7 7 7 10 12 13 14 16 19 20 23 24 24 26 27 27 LCS_GDT W 379 W 379 3 4 12 3 3 4 4 6 7 7 8 8 10 14 15 18 18 19 20 20 22 24 25 LCS_GDT S 380 S 380 3 4 12 3 3 4 4 6 7 7 8 8 13 14 15 18 18 19 20 20 21 24 24 LCS_GDT E 381 E 381 3 4 12 3 3 4 4 4 7 7 8 8 13 14 15 18 18 19 20 20 21 22 22 LCS_AVERAGE LCS_A: 34.06 ( 12.17 17.17 72.84 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 7 9 10 11 13 15 17 18 20 22 24 24 24 25 26 27 27 GDT PERCENT_AT 12.90 16.13 16.13 22.58 29.03 32.26 35.48 41.94 48.39 54.84 58.06 64.52 70.97 77.42 77.42 77.42 80.65 83.87 87.10 87.10 GDT RMS_LOCAL 0.27 0.65 0.65 1.32 1.64 1.83 2.23 2.71 3.29 3.54 3.71 4.01 4.32 4.68 4.68 4.68 4.96 5.48 5.63 5.63 GDT RMS_ALL_AT 8.08 9.18 9.18 8.59 8.35 8.36 8.06 8.81 8.59 8.53 8.74 8.96 8.94 8.69 8.69 8.69 8.70 8.00 8.13 8.13 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 13.856 0 0.469 0.470 16.199 0.000 0.000 LGA A 352 A 352 7.823 0 0.609 0.576 9.879 7.738 8.190 LGA E 353 E 353 7.036 0 0.557 1.218 9.427 8.690 7.354 LGA E 354 E 354 6.788 0 0.596 1.631 10.086 21.071 10.529 LGA L 355 L 355 3.511 0 0.622 0.634 7.781 36.905 26.667 LGA G 356 G 356 7.079 0 0.286 0.286 8.599 13.571 13.571 LGA N 357 N 357 6.305 0 0.584 1.054 10.734 26.786 15.774 LGA I 358 I 358 3.001 0 0.593 0.620 5.210 37.619 48.690 LGA I 359 I 359 5.735 0 0.577 0.920 7.830 21.905 18.869 LGA V 360 V 360 9.742 0 0.568 0.555 13.798 1.667 0.952 LGA A 361 A 361 7.035 0 0.697 0.650 8.571 25.357 20.857 LGA W 362 W 362 3.288 0 0.596 1.177 8.688 54.762 31.871 LGA N 363 N 363 1.603 0 0.262 1.262 3.076 75.119 68.155 LGA P 364 P 364 0.730 0 0.075 0.196 1.383 90.595 90.612 LGA N 365 N 365 0.898 0 0.600 0.497 1.828 88.452 81.726 LGA L 366 L 366 1.952 0 0.586 1.041 4.695 63.214 53.452 LGA W 367 W 367 6.703 0 0.553 1.388 16.594 17.857 5.204 LGA K 368 K 368 6.842 0 0.159 0.628 9.104 15.238 10.212 LGA K 369 K 369 6.404 0 0.179 1.051 7.869 19.524 15.132 LGA G 370 G 370 3.686 0 0.301 0.301 4.523 43.690 43.690 LGA T 371 T 371 4.078 0 0.598 0.620 7.679 45.357 31.837 LGA N 372 N 372 1.907 0 0.337 1.266 7.524 68.690 45.833 LGA G 373 G 373 0.802 0 0.596 0.596 1.647 86.071 86.071 LGA Y 374 Y 374 2.920 0 0.037 1.181 11.995 48.929 23.214 LGA P 375 P 375 3.542 0 0.668 0.634 7.366 34.167 54.626 LGA I 376 I 376 6.440 0 0.286 1.358 8.672 16.429 15.417 LGA F 377 F 377 11.224 0 0.287 1.148 19.751 0.119 0.043 LGA Q 378 Q 378 12.463 0 0.658 1.189 15.061 0.000 0.265 LGA W 379 W 379 19.314 0 0.553 1.664 23.049 0.000 0.000 LGA S 380 S 380 18.850 0 0.127 0.217 20.321 0.000 0.000 LGA E 381 E 381 22.652 0 0.559 1.442 28.881 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.470 7.355 8.726 31.275 26.736 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.71 39.516 35.221 0.463 LGA_LOCAL RMSD: 2.709 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.814 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.470 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.402421 * X + 0.897075 * Y + -0.182522 * Z + -5.908097 Y_new = -0.859344 * X + 0.438900 * Y + 0.262477 * Z + 8.189709 Z_new = 0.315571 * X + 0.051223 * Y + 0.947518 * Z + -37.518902 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.132839 -0.321058 0.054008 [DEG: -64.9069 -18.3953 3.0944 ] ZXZ: -2.533972 0.325414 1.409881 [DEG: -145.1859 18.6449 80.7802 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS037_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS037_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.71 35.221 7.47 REMARK ---------------------------------------------------------- MOLECULE T0537TS037_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 2529 N SER 351 5.645 27.908 52.966 1.00 0.00 N ATOM 2530 CA SER 351 4.721 26.930 52.394 1.00 0.00 C ATOM 2531 C SER 351 5.414 25.839 51.477 1.00 0.00 C ATOM 2532 O SER 351 5.047 25.721 50.303 1.00 0.00 O ATOM 2533 CB SER 351 3.555 27.662 51.690 1.00 0.00 C ATOM 2534 OG SER 351 3.920 28.296 50.448 1.00 0.00 O ATOM 2535 N ALA 352 6.492 25.179 51.969 1.00 0.00 N ATOM 2536 CA ALA 352 7.192 24.108 51.231 1.00 0.00 C ATOM 2537 C ALA 352 6.768 22.746 51.819 1.00 0.00 C ATOM 2538 O ALA 352 7.037 22.451 52.991 1.00 0.00 O ATOM 2539 CB ALA 352 8.703 24.320 51.327 1.00 0.00 C ATOM 2540 N GLU 353 6.027 21.940 51.011 1.00 0.00 N ATOM 2541 CA GLU 353 5.540 20.632 51.456 1.00 0.00 C ATOM 2542 C GLU 353 6.515 19.514 51.035 1.00 0.00 C ATOM 2543 O GLU 353 6.382 18.910 49.972 1.00 0.00 O ATOM 2544 CB GLU 353 4.064 20.390 51.029 1.00 0.00 C ATOM 2545 CG GLU 353 3.536 19.036 51.546 1.00 0.00 C ATOM 2546 CD GLU 353 3.240 19.257 53.023 1.00 0.00 C ATOM 2547 OE1 GLU 353 3.936 20.108 53.640 1.00 0.00 O ATOM 2548 OE2 GLU 353 2.321 18.580 53.555 1.00 0.00 O ATOM 2549 N GLU 354 7.371 19.053 51.993 1.00 0.00 N ATOM 2550 CA GLU 354 8.397 17.999 51.817 1.00 0.00 C ATOM 2551 C GLU 354 7.887 16.641 52.368 1.00 0.00 C ATOM 2552 O GLU 354 7.802 16.441 53.593 1.00 0.00 O ATOM 2553 CB GLU 354 9.765 18.351 52.445 1.00 0.00 C ATOM 2554 CG GLU 354 10.866 17.238 52.395 1.00 0.00 C ATOM 2555 CD GLU 354 11.153 16.270 53.585 1.00 0.00 C ATOM 2556 OE1 GLU 354 10.547 16.361 54.676 1.00 0.00 O ATOM 2557 OE2 GLU 354 12.027 15.406 53.402 1.00 0.00 O ATOM 2558 N LEU 355 7.696 15.701 51.426 1.00 0.00 N ATOM 2559 CA LEU 355 7.200 14.336 51.647 1.00 0.00 C ATOM 2560 C LEU 355 7.886 13.350 50.670 1.00 0.00 C ATOM 2561 O LEU 355 7.817 13.566 49.453 1.00 0.00 O ATOM 2562 CB LEU 355 5.688 14.308 51.408 1.00 0.00 C ATOM 2563 CG LEU 355 4.817 15.011 52.412 1.00 0.00 C ATOM 2564 CD1 LEU 355 3.323 14.848 52.094 1.00 0.00 C ATOM 2565 CD2 LEU 355 5.159 14.601 53.852 1.00 0.00 C ATOM 2566 N GLY 356 8.181 12.171 51.192 1.00 0.00 N ATOM 2567 CA GLY 356 8.828 11.079 50.445 1.00 0.00 C ATOM 2568 C GLY 356 10.338 11.331 50.077 1.00 0.00 C ATOM 2569 O GLY 356 10.859 10.542 49.298 1.00 0.00 O ATOM 2570 N ASN 357 11.106 12.048 50.917 1.00 0.00 N ATOM 2571 CA ASN 357 12.507 12.272 50.757 1.00 0.00 C ATOM 2572 C ASN 357 13.209 11.251 51.671 1.00 0.00 C ATOM 2573 O ASN 357 13.310 11.444 52.910 1.00 0.00 O ATOM 2574 CB ASN 357 12.869 13.687 51.321 1.00 0.00 C ATOM 2575 CG ASN 357 14.351 13.976 51.022 1.00 0.00 C ATOM 2576 OD1 ASN 357 15.181 13.274 51.602 1.00 0.00 O ATOM 2577 ND2 ASN 357 14.638 14.905 50.119 1.00 0.00 N ATOM 2578 N ILE 358 13.676 10.139 51.110 1.00 0.00 N ATOM 2579 CA ILE 358 14.353 9.043 51.802 1.00 0.00 C ATOM 2580 C ILE 358 15.701 8.809 51.070 1.00 0.00 C ATOM 2581 O ILE 358 15.715 8.225 49.992 1.00 0.00 O ATOM 2582 CB ILE 358 13.510 7.739 51.834 1.00 0.00 C ATOM 2583 CG1 ILE 358 12.243 7.960 52.633 1.00 0.00 C ATOM 2584 CG2 ILE 358 14.321 6.594 52.450 1.00 0.00 C ATOM 2585 CD1 ILE 358 11.272 6.784 52.456 1.00 0.00 C ATOM 2586 N ILE 359 16.799 9.027 51.776 1.00 0.00 N ATOM 2587 CA ILE 359 18.122 8.906 51.186 1.00 0.00 C ATOM 2588 C ILE 359 19.166 8.244 52.128 1.00 0.00 C ATOM 2589 O ILE 359 19.102 8.491 53.331 1.00 0.00 O ATOM 2590 CB ILE 359 18.653 10.332 50.835 1.00 0.00 C ATOM 2591 CG1 ILE 359 19.957 10.165 49.983 1.00 0.00 C ATOM 2592 CG2 ILE 359 18.862 11.110 52.125 1.00 0.00 C ATOM 2593 CD1 ILE 359 20.447 11.484 49.390 1.00 0.00 C ATOM 2594 N VAL 360 19.889 7.171 51.700 1.00 0.00 N ATOM 2595 CA VAL 360 20.932 6.648 52.622 1.00 0.00 C ATOM 2596 C VAL 360 22.296 7.412 52.415 1.00 0.00 C ATOM 2597 O VAL 360 23.120 7.054 51.547 1.00 0.00 O ATOM 2598 CB VAL 360 21.160 5.127 52.428 1.00 0.00 C ATOM 2599 CG1 VAL 360 22.377 4.675 53.289 1.00 0.00 C ATOM 2600 CG2 VAL 360 19.965 4.280 52.760 1.00 0.00 C ATOM 2601 N ALA 361 22.265 8.672 52.858 1.00 0.00 N ATOM 2602 CA ALA 361 23.312 9.660 52.729 1.00 0.00 C ATOM 2603 C ALA 361 22.981 10.856 53.649 1.00 0.00 C ATOM 2604 O ALA 361 21.827 11.028 54.064 1.00 0.00 O ATOM 2605 CB ALA 361 23.236 10.140 51.278 1.00 0.00 C ATOM 2606 N TRP 362 23.902 11.778 53.726 1.00 0.00 N ATOM 2607 CA TRP 362 23.611 13.015 54.521 1.00 0.00 C ATOM 2608 C TRP 362 23.299 12.713 55.983 1.00 0.00 C ATOM 2609 O TRP 362 22.127 12.472 56.249 1.00 0.00 O ATOM 2610 CB TRP 362 22.511 13.876 53.843 1.00 0.00 C ATOM 2611 CG TRP 362 22.024 14.998 54.784 1.00 0.00 C ATOM 2612 CD1 TRP 362 22.726 16.007 55.376 1.00 0.00 C ATOM 2613 CD2 TRP 362 20.643 15.206 55.128 1.00 0.00 C ATOM 2614 NE1 TRP 362 21.871 16.821 56.082 1.00 0.00 N ATOM 2615 CE2 TRP 362 20.589 16.343 55.936 1.00 0.00 C ATOM 2616 CE3 TRP 362 19.519 14.509 54.797 1.00 0.00 C ATOM 2617 CZ2 TRP 362 19.396 16.800 56.425 1.00 0.00 C ATOM 2618 CZ3 TRP 362 18.320 14.971 55.295 1.00 0.00 C ATOM 2619 CH2 TRP 362 18.261 16.094 56.095 1.00 0.00 H ATOM 2620 N ASN 363 24.273 12.192 56.747 1.00 0.00 N ATOM 2621 CA ASN 363 24.000 11.901 58.179 1.00 0.00 C ATOM 2622 C ASN 363 23.198 13.127 58.649 1.00 0.00 C ATOM 2623 O ASN 363 23.402 14.268 58.163 1.00 0.00 O ATOM 2624 CB ASN 363 25.269 11.749 58.990 1.00 0.00 C ATOM 2625 CG ASN 363 26.355 12.798 59.033 1.00 0.00 C ATOM 2626 OD1 ASN 363 27.255 12.952 58.110 1.00 0.00 O ATOM 2627 ND2 ASN 363 26.168 13.608 60.029 1.00 0.00 N ATOM 2628 N PRO 364 22.124 12.886 59.450 1.00 0.00 N ATOM 2629 CA PRO 364 21.257 13.944 59.850 1.00 0.00 C ATOM 2630 C PRO 364 21.965 15.069 60.523 1.00 0.00 C ATOM 2631 O PRO 364 21.266 16.045 60.804 1.00 0.00 O ATOM 2632 CB PRO 364 20.027 13.469 60.679 1.00 0.00 C ATOM 2633 CG PRO 364 20.353 11.960 60.761 1.00 0.00 C ATOM 2634 CD PRO 364 21.609 11.568 60.019 1.00 0.00 C ATOM 2635 N ASN 365 23.230 15.029 60.940 1.00 0.00 N ATOM 2636 CA ASN 365 23.760 16.232 61.585 1.00 0.00 C ATOM 2637 C ASN 365 24.053 17.229 60.440 1.00 0.00 C ATOM 2638 O ASN 365 24.972 17.077 59.644 1.00 0.00 O ATOM 2639 CB ASN 365 25.061 15.944 62.356 1.00 0.00 C ATOM 2640 CG ASN 365 24.823 15.035 63.506 1.00 0.00 C ATOM 2641 OD1 ASN 365 23.947 15.260 64.340 1.00 0.00 O ATOM 2642 ND2 ASN 365 25.626 13.939 63.575 1.00 0.00 N ATOM 2643 N LEU 366 23.176 18.204 60.410 1.00 0.00 N ATOM 2644 CA LEU 366 23.161 19.321 59.489 1.00 0.00 C ATOM 2645 C LEU 366 23.093 20.592 60.329 1.00 0.00 C ATOM 2646 O LEU 366 22.078 20.907 60.977 1.00 0.00 O ATOM 2647 CB LEU 366 22.108 19.193 58.390 1.00 0.00 C ATOM 2648 CG LEU 366 22.218 20.327 57.342 1.00 0.00 C ATOM 2649 CD1 LEU 366 21.750 21.690 57.854 1.00 0.00 C ATOM 2650 CD2 LEU 366 23.656 20.386 56.807 1.00 0.00 C ATOM 2651 N TRP 367 24.211 21.300 60.261 1.00 0.00 N ATOM 2652 CA TRP 367 24.424 22.536 60.981 1.00 0.00 C ATOM 2653 C TRP 367 23.276 23.565 60.835 1.00 0.00 C ATOM 2654 O TRP 367 22.739 23.938 61.882 1.00 0.00 O ATOM 2655 CB TRP 367 25.796 23.164 60.611 1.00 0.00 C ATOM 2656 CG TRP 367 25.952 24.584 61.142 1.00 0.00 C ATOM 2657 CD1 TRP 367 26.118 25.754 60.454 1.00 0.00 C ATOM 2658 CD2 TRP 367 25.888 24.943 62.533 1.00 0.00 C ATOM 2659 NE1 TRP 367 26.185 26.810 61.328 1.00 0.00 N ATOM 2660 CE2 TRP 367 26.036 26.328 62.610 1.00 0.00 C ATOM 2661 CE3 TRP 367 25.707 24.177 63.649 1.00 0.00 C ATOM 2662 CZ2 TRP 367 26.005 26.971 63.814 1.00 0.00 C ATOM 2663 CZ3 TRP 367 25.687 24.829 64.863 1.00 0.00 C ATOM 2664 CH2 TRP 367 25.834 26.200 64.943 1.00 0.00 H ATOM 2665 N LYS 368 22.923 24.044 59.641 1.00 0.00 N ATOM 2666 CA LYS 368 21.912 25.066 59.433 1.00 0.00 C ATOM 2667 C LYS 368 20.890 24.750 58.294 1.00 0.00 C ATOM 2668 O LYS 368 21.242 24.412 57.163 1.00 0.00 O ATOM 2669 CB LYS 368 22.684 26.366 59.145 1.00 0.00 C ATOM 2670 CG LYS 368 23.471 26.348 57.841 1.00 0.00 C ATOM 2671 CD LYS 368 23.880 27.723 57.311 1.00 0.00 C ATOM 2672 CE LYS 368 24.946 27.660 56.215 1.00 0.00 C ATOM 2673 NZ LYS 368 26.231 27.213 56.793 1.00 0.00 N ATOM 2674 N LYS 369 19.650 24.959 58.679 1.00 0.00 N ATOM 2675 CA LYS 369 18.461 24.727 57.840 1.00 0.00 C ATOM 2676 C LYS 369 17.414 25.914 58.067 1.00 0.00 C ATOM 2677 O LYS 369 17.766 26.928 58.738 1.00 0.00 O ATOM 2678 CB LYS 369 17.731 23.440 58.186 1.00 0.00 C ATOM 2679 CG LYS 369 16.872 23.694 59.482 1.00 0.00 C ATOM 2680 CD LYS 369 15.740 22.687 59.706 1.00 0.00 C ATOM 2681 CE LYS 369 14.780 23.081 60.826 1.00 0.00 C ATOM 2682 NZ LYS 369 13.596 22.195 60.818 1.00 0.00 N ATOM 2683 N GLY 370 16.263 25.859 57.396 1.00 0.00 N ATOM 2684 CA GLY 370 15.206 26.903 57.450 1.00 0.00 C ATOM 2685 C GLY 370 13.886 26.261 56.848 1.00 0.00 C ATOM 2686 O GLY 370 13.498 25.223 57.405 1.00 0.00 O ATOM 2687 N THR 371 12.950 27.069 56.315 1.00 0.00 N ATOM 2688 CA THR 371 11.743 26.681 55.543 1.00 0.00 C ATOM 2689 C THR 371 10.836 25.532 56.160 1.00 0.00 C ATOM 2690 O THR 371 11.246 24.380 56.298 1.00 0.00 O ATOM 2691 CB THR 371 12.139 26.219 54.101 1.00 0.00 C ATOM 2692 OG1 THR 371 12.671 24.858 54.068 1.00 0.00 O ATOM 2693 CG2 THR 371 13.132 27.255 53.470 1.00 0.00 C ATOM 2694 N ASN 372 9.779 25.954 56.830 1.00 0.00 N ATOM 2695 CA ASN 372 8.813 25.116 57.575 1.00 0.00 C ATOM 2696 C ASN 372 8.629 23.636 57.104 1.00 0.00 C ATOM 2697 O ASN 372 8.740 22.752 58.006 1.00 0.00 O ATOM 2698 CB ASN 372 7.457 25.874 57.567 1.00 0.00 C ATOM 2699 CG ASN 372 6.473 25.082 58.479 1.00 0.00 C ATOM 2700 OD1 ASN 372 6.581 25.149 59.702 1.00 0.00 O ATOM 2701 ND2 ASN 372 5.489 24.367 57.869 1.00 0.00 N ATOM 2702 N GLY 373 8.177 23.357 55.886 1.00 0.00 N ATOM 2703 CA GLY 373 8.168 21.916 55.555 1.00 0.00 C ATOM 2704 C GLY 373 9.627 21.700 55.212 1.00 0.00 C ATOM 2705 O GLY 373 9.948 21.921 54.042 1.00 0.00 O ATOM 2706 N TYR 374 10.378 20.964 55.940 1.00 0.00 N ATOM 2707 CA TYR 374 11.831 20.858 55.644 1.00 0.00 C ATOM 2708 C TYR 374 12.419 19.486 55.944 1.00 0.00 C ATOM 2709 O TYR 374 12.282 19.074 57.124 1.00 0.00 O ATOM 2710 CB TYR 374 12.602 21.863 56.483 1.00 0.00 C ATOM 2711 CG TYR 374 14.039 22.001 56.035 1.00 0.00 C ATOM 2712 CD1 TYR 374 14.374 22.777 54.950 1.00 0.00 C ATOM 2713 CD2 TYR 374 15.049 21.352 56.700 1.00 0.00 C ATOM 2714 CE1 TYR 374 15.681 22.895 54.536 1.00 0.00 C ATOM 2715 CE2 TYR 374 16.357 21.459 56.300 1.00 0.00 C ATOM 2716 CZ TYR 374 16.676 22.231 55.211 1.00 0.00 C ATOM 2717 OH TYR 374 18.017 22.343 54.792 1.00 0.00 H ATOM 2718 N PRO 375 13.271 18.756 55.125 1.00 0.00 N ATOM 2719 CA PRO 375 13.730 17.521 55.555 1.00 0.00 C ATOM 2720 C PRO 375 14.467 17.505 56.885 1.00 0.00 C ATOM 2721 O PRO 375 14.418 16.440 57.507 1.00 0.00 O ATOM 2722 CB PRO 375 14.618 16.890 54.454 1.00 0.00 C ATOM 2723 CG PRO 375 14.986 18.146 53.593 1.00 0.00 C ATOM 2724 CD PRO 375 13.822 19.042 53.728 1.00 0.00 C ATOM 2725 N ILE 376 15.229 18.525 57.379 1.00 0.00 N ATOM 2726 CA ILE 376 15.788 18.348 58.738 1.00 0.00 C ATOM 2727 C ILE 376 14.572 17.938 59.663 1.00 0.00 C ATOM 2728 O ILE 376 13.679 18.769 59.874 1.00 0.00 O ATOM 2729 CB ILE 376 16.476 19.593 59.312 1.00 0.00 C ATOM 2730 CG1 ILE 376 17.703 19.952 58.465 1.00 0.00 C ATOM 2731 CG2 ILE 376 16.911 19.307 60.764 1.00 0.00 C ATOM 2732 CD1 ILE 376 18.796 18.890 58.434 1.00 0.00 C ATOM 2733 N PHE 377 14.712 16.839 60.441 1.00 0.00 N ATOM 2734 CA PHE 377 13.647 16.265 61.283 1.00 0.00 C ATOM 2735 C PHE 377 13.057 17.355 62.228 1.00 0.00 C ATOM 2736 O PHE 377 13.609 17.488 63.342 1.00 0.00 O ATOM 2737 CB PHE 377 14.186 15.010 62.012 1.00 0.00 C ATOM 2738 CG PHE 377 12.985 14.201 62.534 1.00 0.00 C ATOM 2739 CD1 PHE 377 12.267 13.363 61.675 1.00 0.00 C ATOM 2740 CD2 PHE 377 12.610 14.271 63.879 1.00 0.00 C ATOM 2741 CE1 PHE 377 11.218 12.572 62.158 1.00 0.00 C ATOM 2742 CE2 PHE 377 11.552 13.506 64.376 1.00 0.00 C ATOM 2743 CZ PHE 377 10.868 12.646 63.507 1.00 0.00 C ATOM 2744 N GLN 378 11.775 17.525 62.058 1.00 0.00 N ATOM 2745 CA GLN 378 10.938 18.413 62.838 1.00 0.00 C ATOM 2746 C GLN 378 9.449 18.198 62.395 1.00 0.00 C ATOM 2747 O GLN 378 9.183 18.163 61.183 1.00 0.00 O ATOM 2748 CB GLN 378 11.376 19.868 62.805 1.00 0.00 C ATOM 2749 CG GLN 378 12.636 20.216 63.504 1.00 0.00 C ATOM 2750 CD GLN 378 12.680 21.716 63.770 1.00 0.00 C ATOM 2751 OE1 GLN 378 13.619 22.226 64.379 1.00 0.00 O ATOM 2752 NE2 GLN 378 11.624 22.443 63.318 1.00 0.00 N ATOM 2753 N TRP 379 8.579 18.529 63.306 1.00 0.00 N ATOM 2754 CA TRP 379 7.147 18.394 63.193 1.00 0.00 C ATOM 2755 C TRP 379 6.476 19.792 63.066 1.00 0.00 C ATOM 2756 O TRP 379 6.556 20.644 63.953 1.00 0.00 O ATOM 2757 CB TRP 379 6.665 17.618 64.429 1.00 0.00 C ATOM 2758 CG TRP 379 7.137 18.214 65.712 1.00 0.00 C ATOM 2759 CD1 TRP 379 6.631 19.169 66.546 1.00 0.00 C ATOM 2760 CD2 TRP 379 8.387 17.799 66.276 1.00 0.00 C ATOM 2761 NE1 TRP 379 7.496 19.375 67.596 1.00 0.00 N ATOM 2762 CE2 TRP 379 8.580 18.537 67.443 1.00 0.00 C ATOM 2763 CE3 TRP 379 9.305 16.878 65.853 1.00 0.00 C ATOM 2764 CZ2 TRP 379 9.701 18.365 68.205 1.00 0.00 C ATOM 2765 CZ3 TRP 379 10.429 16.701 66.627 1.00 0.00 C ATOM 2766 CH2 TRP 379 10.624 17.431 67.781 1.00 0.00 H ATOM 2767 N SER 380 5.930 20.029 61.869 1.00 0.00 N ATOM 2768 CA SER 380 5.209 21.223 61.491 1.00 0.00 C ATOM 2769 C SER 380 3.704 21.011 61.748 1.00 0.00 C ATOM 2770 O SER 380 3.093 20.186 61.063 1.00 0.00 O ATOM 2771 CB SER 380 5.351 21.503 59.999 1.00 0.00 C ATOM 2772 OG SER 380 6.628 21.884 59.560 1.00 0.00 O ATOM 2773 N GLU 381 3.112 21.993 62.378 1.00 0.00 N ATOM 2774 CA GLU 381 1.674 22.049 62.752 1.00 0.00 C ATOM 2775 C GLU 381 1.443 23.409 63.440 1.00 0.00 C ATOM 2776 O GLU 381 0.574 24.191 63.052 1.00 0.00 O ATOM 2777 CB GLU 381 1.362 20.930 63.734 1.00 0.00 C ATOM 2778 CG GLU 381 1.128 19.556 63.111 1.00 0.00 C ATOM 2779 CD GLU 381 -0.264 19.534 62.495 1.00 0.00 C ATOM 2780 OE1 GLU 381 -0.900 20.620 62.436 1.00 0.00 O ATOM 2781 OE2 GLU 381 -0.712 18.431 62.081 1.00 0.00 O ATOM 2782 OXT GLU 381 2.163 23.689 64.430 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 101.81 20.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 117.59 9.1 22 100.0 22 ARMSMC SURFACE . . . . . . . . 101.14 20.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 105.10 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.45 50.0 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 82.04 48.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 79.52 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 82.30 52.2 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 64.51 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.83 31.8 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 87.16 31.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 67.91 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 86.61 30.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 47.83 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.55 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 27.67 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 13.37 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 63.55 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.84 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 77.84 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 77.84 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.47 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.47 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2410 CRMSCA SECONDARY STRUCTURE . . 6.31 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.44 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.63 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.57 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.37 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.56 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.57 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.04 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.30 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.48 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.12 120 100.0 120 CRMSSC BURIED . . . . . . . . 8.94 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.83 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 7.37 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.94 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.97 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.649 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 5.888 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 6.519 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.320 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.743 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 5.917 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 6.650 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 7.261 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.069 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 9.366 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 7.922 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 9.152 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 8.073 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.856 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 6.803 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 7.905 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 7.485 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 11 25 31 31 DISTCA CA (P) 0.00 6.45 16.13 35.48 80.65 31 DISTCA CA (RMS) 0.00 1.50 2.24 3.33 5.85 DISTCA ALL (N) 0 9 28 74 168 254 254 DISTALL ALL (P) 0.00 3.54 11.02 29.13 66.14 254 DISTALL ALL (RMS) 0.00 1.58 2.26 3.46 5.93 DISTALL END of the results output