####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS033_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS033_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 355 - 371 4.94 9.04 LCS_AVERAGE: 49.01 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 369 - 374 1.86 15.26 LCS_AVERAGE: 15.71 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.93 17.08 LONGEST_CONTINUOUS_SEGMENT: 4 366 - 369 0.92 11.83 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.99 13.56 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.86 12.22 LONGEST_CONTINUOUS_SEGMENT: 4 378 - 381 0.74 7.92 LCS_AVERAGE: 11.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 9 3 3 3 5 5 6 8 9 10 12 13 14 16 19 21 23 27 29 30 30 LCS_GDT A 352 A 352 3 3 9 3 3 4 5 5 8 10 11 12 14 15 16 19 20 22 25 27 29 30 30 LCS_GDT E 353 E 353 3 3 12 3 4 6 6 6 8 10 11 12 14 15 16 19 20 22 25 27 29 30 30 LCS_GDT E 354 E 354 3 4 12 0 3 3 4 4 8 10 11 12 14 15 16 19 20 22 25 27 29 30 30 LCS_GDT L 355 L 355 3 4 17 0 3 6 6 6 8 10 11 12 14 15 16 19 20 22 25 27 29 30 30 LCS_GDT G 356 G 356 3 4 17 0 3 3 4 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT N 357 N 357 3 4 17 3 3 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT I 358 I 358 3 5 17 3 3 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT I 359 I 359 3 5 17 3 3 3 4 5 8 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT V 360 V 360 3 5 17 3 3 3 4 5 5 6 11 12 14 16 16 18 19 21 25 27 29 30 30 LCS_GDT A 361 A 361 3 5 17 3 4 5 7 7 8 9 10 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT W 362 W 362 4 5 17 3 3 4 4 5 5 7 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT N 363 N 363 4 5 17 3 4 5 7 7 8 9 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT P 364 P 364 4 5 17 3 3 4 4 5 7 8 10 12 14 15 16 18 20 22 25 27 29 30 30 LCS_GDT N 365 N 365 4 5 17 3 3 5 6 7 8 9 10 12 14 15 16 18 20 22 25 27 29 30 30 LCS_GDT L 366 L 366 4 5 17 3 3 5 6 7 8 9 10 12 14 15 16 18 20 22 25 27 29 30 30 LCS_GDT W 367 W 367 4 5 17 3 3 5 6 7 8 9 9 11 14 15 16 18 20 22 25 27 29 30 30 LCS_GDT K 368 K 368 4 5 17 3 3 4 4 5 8 9 9 11 13 15 16 18 19 21 23 24 25 28 30 LCS_GDT K 369 K 369 4 6 17 3 3 4 6 7 8 9 9 11 14 15 16 18 19 21 23 24 27 30 30 LCS_GDT G 370 G 370 3 6 17 3 3 5 6 7 8 9 9 11 14 15 16 18 20 22 25 27 29 30 30 LCS_GDT T 371 T 371 3 6 17 3 3 4 4 5 8 10 11 12 14 15 16 18 20 22 25 27 29 30 30 LCS_GDT N 372 N 372 3 6 15 3 3 4 5 5 8 10 11 12 12 14 16 17 19 22 23 27 29 30 30 LCS_GDT G 373 G 373 4 6 15 3 3 4 4 5 6 6 9 9 9 13 14 16 19 22 24 27 29 30 30 LCS_GDT Y 374 Y 374 4 6 15 3 3 4 5 5 8 10 11 12 13 16 16 19 20 22 25 27 29 30 30 LCS_GDT P 375 P 375 4 5 15 3 4 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT I 376 I 376 4 5 15 3 4 6 6 6 8 11 11 14 14 16 16 19 19 22 25 27 29 30 30 LCS_GDT F 377 F 377 4 5 13 3 4 6 6 6 9 11 11 14 14 16 16 19 19 22 25 27 29 30 30 LCS_GDT Q 378 Q 378 4 5 13 3 4 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT W 379 W 379 4 5 13 3 4 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT S 380 S 380 4 5 13 3 4 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_GDT E 381 E 381 4 5 13 3 4 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 LCS_AVERAGE LCS_A: 25.39 ( 11.45 15.71 49.01 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 6 7 8 9 11 11 14 14 16 16 19 20 22 25 27 29 30 30 GDT PERCENT_AT 9.68 12.90 19.35 22.58 25.81 29.03 35.48 35.48 45.16 45.16 51.61 51.61 61.29 64.52 70.97 80.65 87.10 93.55 96.77 96.77 GDT RMS_LOCAL 0.07 0.60 1.09 1.26 1.56 1.92 2.56 2.56 3.22 3.22 3.59 3.59 4.78 5.34 5.43 5.95 6.13 6.44 6.61 6.61 GDT RMS_ALL_AT 13.33 8.84 8.44 8.89 8.57 8.70 8.96 8.96 9.15 9.15 8.95 8.95 7.61 6.93 7.14 6.99 6.96 6.85 6.82 6.82 # Checking swapping # possible swapping detected: E 354 E 354 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 16.238 0 0.428 0.721 19.139 0.000 0.000 LGA A 352 A 352 10.838 0 0.631 0.604 12.820 0.000 0.000 LGA E 353 E 353 10.609 0 0.616 0.537 12.297 0.000 0.000 LGA E 354 E 354 10.174 0 0.620 0.798 16.247 0.714 0.317 LGA L 355 L 355 6.630 0 0.648 0.692 11.842 21.071 12.024 LGA G 356 G 356 2.610 0 0.602 0.602 3.381 55.476 55.476 LGA N 357 N 357 2.618 0 0.588 0.684 5.070 63.333 47.560 LGA I 358 I 358 2.469 0 0.633 0.687 6.226 62.976 49.226 LGA I 359 I 359 3.541 0 0.536 1.478 10.431 45.595 27.976 LGA V 360 V 360 6.789 0 0.317 0.410 10.489 16.667 10.000 LGA A 361 A 361 7.011 0 0.670 0.600 8.293 16.429 14.095 LGA W 362 W 362 6.007 0 0.073 1.574 15.366 19.286 6.327 LGA N 363 N 363 8.037 0 0.255 1.041 10.409 7.381 4.345 LGA P 364 P 364 10.595 0 0.706 0.774 13.879 0.000 0.000 LGA N 365 N 365 12.106 0 0.705 0.593 14.939 0.000 0.000 LGA L 366 L 366 11.071 0 0.598 0.596 11.988 0.000 0.060 LGA W 367 W 367 11.944 0 0.094 1.196 13.981 0.000 0.680 LGA K 368 K 368 15.757 0 0.656 0.980 21.092 0.000 0.000 LGA K 369 K 369 14.865 0 0.066 0.902 20.775 0.000 0.000 LGA G 370 G 370 10.021 0 0.472 0.472 11.787 0.000 0.000 LGA T 371 T 371 11.583 0 0.650 1.358 13.904 0.000 0.136 LGA N 372 N 372 13.538 0 0.272 1.253 13.769 0.000 0.000 LGA G 373 G 373 11.756 0 0.678 0.678 12.028 0.238 0.238 LGA Y 374 Y 374 5.673 0 0.220 1.354 15.831 27.262 11.151 LGA P 375 P 375 0.568 0 0.670 0.608 4.127 66.310 65.714 LGA I 376 I 376 3.878 0 0.326 1.304 10.124 63.571 35.119 LGA F 377 F 377 2.825 0 0.090 1.142 10.873 52.619 23.896 LGA Q 378 Q 378 2.937 0 0.632 1.486 10.204 65.119 33.704 LGA W 379 W 379 1.321 0 0.643 1.297 8.598 73.214 50.204 LGA S 380 S 380 1.696 0 0.114 0.691 5.124 72.976 62.540 LGA E 381 E 381 1.776 1 0.638 1.192 5.185 57.262 60.333 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 6.803 6.672 8.456 25.403 18.423 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.56 37.903 32.295 0.414 LGA_LOCAL RMSD: 2.559 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.963 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 6.803 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.791161 * X + -0.607859 * Y + -0.067612 * Z + 76.200592 Y_new = -0.599086 * X + 0.792469 * Y + -0.114412 * Z + 20.089424 Z_new = 0.123127 * X + -0.050013 * Y + -0.991130 * Z + 39.285088 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.493485 -0.123440 -3.091175 [DEG: -142.8662 -7.0726 -177.1113 ] ZXZ: -0.533741 3.008302 1.956628 [DEG: -30.5811 172.3630 112.1065 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS033_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS033_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.56 32.295 6.80 REMARK ---------------------------------------------------------- MOLECULE T0537TS033_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 6.414 29.609 45.358 1.00 8.79 N ATOM 2530 CA SER 351 5.534 28.750 46.097 1.00 8.79 C ATOM 2531 C SER 351 6.099 27.375 46.205 1.00 8.79 C ATOM 2532 O SER 351 5.491 26.416 45.731 1.00 8.79 O ATOM 2533 CB SER 351 4.173 28.654 45.404 1.00 8.79 C ATOM 2534 OG SER 351 3.570 29.931 45.286 1.00 8.79 O ATOM 2535 N ALA 352 7.290 27.231 46.810 1.00 11.75 N ATOM 2536 CA ALA 352 7.796 25.903 46.967 1.00 11.75 C ATOM 2537 C ALA 352 7.480 25.516 48.372 1.00 11.75 C ATOM 2538 O ALA 352 7.796 26.242 49.312 1.00 11.75 O ATOM 2539 CB ALA 352 9.296 25.874 46.720 1.00 11.75 C ATOM 2540 N GLU 353 6.826 24.352 48.546 1.00 11.51 N ATOM 2541 CA GLU 353 6.477 23.921 49.866 1.00 11.51 C ATOM 2542 C GLU 353 7.297 22.711 50.157 1.00 11.51 C ATOM 2543 O GLU 353 7.455 21.839 49.306 1.00 11.51 O ATOM 2544 CB GLU 353 4.988 23.582 49.942 1.00 11.51 C ATOM 2545 CG GLU 353 4.529 23.103 51.311 1.00 11.51 C ATOM 2546 CD GLU 353 3.043 22.805 51.356 1.00 11.51 C ATOM 2547 OE1 GLU 353 2.372 22.967 50.314 1.00 11.51 O ATOM 2548 OE2 GLU 353 2.550 22.409 52.433 1.00 11.51 O ATOM 2549 N GLU 354 7.862 22.638 51.377 1.00 8.65 N ATOM 2550 CA GLU 354 8.652 21.491 51.695 1.00 8.65 C ATOM 2551 C GLU 354 8.216 20.977 53.026 1.00 8.65 C ATOM 2552 O GLU 354 8.117 21.724 53.998 1.00 8.65 O ATOM 2553 CB GLU 354 10.136 21.862 51.750 1.00 8.65 C ATOM 2554 CG GLU 354 10.705 22.337 50.423 1.00 8.65 C ATOM 2555 CD GLU 354 12.152 22.777 50.535 1.00 8.65 C ATOM 2556 OE1 GLU 354 12.991 21.957 50.964 1.00 8.65 O ATOM 2557 OE2 GLU 354 12.447 23.943 50.194 1.00 8.65 O ATOM 2558 N LEU 355 7.918 19.667 53.080 1.00 5.31 N ATOM 2559 CA LEU 355 7.544 19.010 54.294 1.00 5.31 C ATOM 2560 C LEU 355 8.132 17.641 54.199 1.00 5.31 C ATOM 2561 O LEU 355 8.342 17.132 53.098 1.00 5.31 O ATOM 2562 CB LEU 355 6.020 18.947 54.420 1.00 5.31 C ATOM 2563 CG LEU 355 5.294 20.287 54.554 1.00 5.31 C ATOM 2564 CD1 LEU 355 3.790 20.097 54.446 1.00 5.31 C ATOM 2565 CD2 LEU 355 5.597 20.931 55.898 1.00 5.31 C ATOM 2566 N GLY 356 8.429 17.009 55.349 1.00 5.17 N ATOM 2567 CA GLY 356 8.967 15.679 55.312 1.00 5.17 C ATOM 2568 C GLY 356 10.455 15.780 55.378 1.00 5.17 C ATOM 2569 O GLY 356 11.024 16.850 55.174 1.00 5.17 O ATOM 2570 N ASN 357 11.128 14.643 55.655 1.00 4.86 N ATOM 2571 CA ASN 357 12.553 14.680 55.797 1.00 4.86 C ATOM 2572 C ASN 357 13.165 13.632 54.926 1.00 4.86 C ATOM 2573 O ASN 357 12.554 12.609 54.620 1.00 4.86 O ATOM 2574 CB ASN 357 12.955 14.417 57.250 1.00 4.86 C ATOM 2575 CG ASN 357 12.437 15.481 58.198 1.00 4.86 C ATOM 2576 OD1 ASN 357 12.930 16.609 58.209 1.00 4.86 O ATOM 2577 ND2 ASN 357 11.440 15.122 59.000 1.00 4.86 N ATOM 2578 N ILE 358 14.413 13.895 54.500 1.00 4.35 N ATOM 2579 CA ILE 358 15.166 13.028 53.647 1.00 4.35 C ATOM 2580 C ILE 358 16.456 12.850 54.407 1.00 4.35 C ATOM 2581 O ILE 358 16.936 13.792 55.035 1.00 4.35 O ATOM 2582 CB ILE 358 15.399 13.661 52.263 1.00 4.35 C ATOM 2583 CG1 ILE 358 14.062 13.925 51.566 1.00 4.35 C ATOM 2584 CG2 ILE 358 16.225 12.733 51.385 1.00 4.35 C ATOM 2585 CD1 ILE 358 14.184 14.749 50.303 1.00 4.35 C ATOM 2586 N ILE 359 17.040 11.635 54.445 1.00 4.70 N ATOM 2587 CA ILE 359 18.209 11.492 55.273 1.00 4.70 C ATOM 2588 C ILE 359 19.202 10.567 54.638 1.00 4.70 C ATOM 2589 O ILE 359 18.968 10.006 53.569 1.00 4.70 O ATOM 2590 CB ILE 359 17.852 10.919 56.657 1.00 4.70 C ATOM 2591 CG1 ILE 359 17.187 9.549 56.512 1.00 4.70 C ATOM 2592 CG2 ILE 359 16.892 11.846 57.387 1.00 4.70 C ATOM 2593 CD1 ILE 359 17.028 8.805 57.820 1.00 4.70 C ATOM 2594 N VAL 360 20.356 10.418 55.329 1.00 3.53 N ATOM 2595 CA VAL 360 21.450 9.533 55.023 1.00 3.53 C ATOM 2596 C VAL 360 22.152 9.954 53.755 1.00 3.53 C ATOM 2597 O VAL 360 22.781 9.155 53.063 1.00 3.53 O ATOM 2598 CB VAL 360 20.965 8.084 54.828 1.00 3.53 C ATOM 2599 CG1 VAL 360 22.151 7.139 54.703 1.00 3.53 C ATOM 2600 CG2 VAL 360 20.120 7.641 56.011 1.00 3.53 C ATOM 2601 N ALA 361 22.108 11.253 53.410 1.00 4.89 N ATOM 2602 CA ALA 361 22.891 11.641 52.272 1.00 4.89 C ATOM 2603 C ALA 361 24.207 12.077 52.841 1.00 4.89 C ATOM 2604 O ALA 361 24.262 12.975 53.678 1.00 4.89 O ATOM 2605 CB ALA 361 22.211 12.775 51.522 1.00 4.89 C ATOM 2606 N TRP 362 25.310 11.422 52.425 1.00 5.29 N ATOM 2607 CA TRP 362 26.591 11.754 52.980 1.00 5.29 C ATOM 2608 C TRP 362 26.982 13.131 52.555 1.00 5.29 C ATOM 2609 O TRP 362 27.385 13.955 53.374 1.00 5.29 O ATOM 2610 CB TRP 362 27.657 10.767 52.499 1.00 5.29 C ATOM 2611 CG TRP 362 29.037 11.090 52.983 1.00 5.29 C ATOM 2612 CD1 TRP 362 30.069 11.588 52.243 1.00 5.29 C ATOM 2613 CD2 TRP 362 29.535 10.938 54.318 1.00 5.29 C ATOM 2614 NE1 TRP 362 31.182 11.756 53.032 1.00 5.29 N ATOM 2615 CE2 TRP 362 30.878 11.364 54.312 1.00 5.29 C ATOM 2616 CE3 TRP 362 28.978 10.483 55.517 1.00 5.29 C ATOM 2617 CZ2 TRP 362 31.672 11.348 55.457 1.00 5.29 C ATOM 2618 CZ3 TRP 362 29.769 10.470 56.651 1.00 5.29 C ATOM 2619 CH2 TRP 362 31.101 10.899 56.617 1.00 5.29 H ATOM 2620 N ASN 363 26.853 13.418 51.246 1.00 6.91 N ATOM 2621 CA ASN 363 27.268 14.686 50.725 1.00 6.91 C ATOM 2622 C ASN 363 26.296 15.710 51.191 1.00 6.91 C ATOM 2623 O ASN 363 25.118 15.429 51.405 1.00 6.91 O ATOM 2624 CB ASN 363 27.294 14.655 49.195 1.00 6.91 C ATOM 2625 CG ASN 363 28.427 13.809 48.650 1.00 6.91 C ATOM 2626 OD1 ASN 363 29.412 13.552 49.342 1.00 6.91 O ATOM 2627 ND2 ASN 363 28.290 13.371 47.403 1.00 6.91 N ATOM 2628 N PRO 364 26.786 16.901 51.379 1.00 5.90 N ATOM 2629 CA PRO 364 25.958 17.986 51.800 1.00 5.90 C ATOM 2630 C PRO 364 25.067 18.346 50.667 1.00 5.90 C ATOM 2631 O PRO 364 25.517 18.330 49.523 1.00 5.90 O ATOM 2632 CB PRO 364 26.951 19.097 52.149 1.00 5.90 C ATOM 2633 CG PRO 364 28.160 18.788 51.330 1.00 5.90 C ATOM 2634 CD PRO 364 28.226 17.289 51.233 1.00 5.90 C ATOM 2635 N ASN 365 23.798 18.660 50.962 1.00 6.24 N ATOM 2636 CA ASN 365 22.894 19.020 49.919 1.00 6.24 C ATOM 2637 C ASN 365 23.018 20.487 49.706 1.00 6.24 C ATOM 2638 O ASN 365 23.292 21.237 50.641 1.00 6.24 O ATOM 2639 CB ASN 365 21.457 18.667 50.309 1.00 6.24 C ATOM 2640 CG ASN 365 21.243 17.173 50.454 1.00 6.24 C ATOM 2641 OD1 ASN 365 21.420 16.416 49.500 1.00 6.24 O ATOM 2642 ND2 ASN 365 20.859 16.745 51.651 1.00 6.24 N ATOM 2643 N LEU 366 22.863 20.933 48.445 1.00 5.28 N ATOM 2644 CA LEU 366 22.905 22.341 48.197 1.00 5.28 C ATOM 2645 C LEU 366 21.701 22.701 47.411 1.00 5.28 C ATOM 2646 O LEU 366 21.377 22.050 46.419 1.00 5.28 O ATOM 2647 CB LEU 366 24.164 22.710 47.411 1.00 5.28 C ATOM 2648 CG LEU 366 24.311 24.181 47.017 1.00 5.28 C ATOM 2649 CD1 LEU 366 24.505 25.051 48.249 1.00 5.28 C ATOM 2650 CD2 LEU 366 25.513 24.375 46.104 1.00 5.28 C ATOM 2651 N TRP 367 20.981 23.741 47.861 1.00 6.18 N ATOM 2652 CA TRP 367 19.883 24.173 47.064 1.00 6.18 C ATOM 2653 C TRP 367 19.785 25.653 47.252 1.00 6.18 C ATOM 2654 O TRP 367 19.724 26.150 48.374 1.00 6.18 O ATOM 2655 CB TRP 367 18.591 23.487 47.514 1.00 6.18 C ATOM 2656 CG TRP 367 17.406 23.822 46.663 1.00 6.18 C ATOM 2657 CD1 TRP 367 17.424 24.301 45.384 1.00 6.18 C ATOM 2658 CD2 TRP 367 16.025 23.706 47.029 1.00 6.18 C ATOM 2659 NE1 TRP 367 16.141 24.489 44.930 1.00 6.18 N ATOM 2660 CE2 TRP 367 15.263 24.130 45.923 1.00 6.18 C ATOM 2661 CE3 TRP 367 15.360 23.284 48.183 1.00 6.18 C ATOM 2662 CZ2 TRP 367 13.870 24.145 45.937 1.00 6.18 C ATOM 2663 CZ3 TRP 367 13.977 23.300 48.193 1.00 6.18 C ATOM 2664 CH2 TRP 367 13.245 23.727 47.081 1.00 6.18 H ATOM 2665 N LYS 368 19.818 26.389 46.128 1.00 7.04 N ATOM 2666 CA LYS 368 19.752 27.821 46.084 1.00 7.04 C ATOM 2667 C LYS 368 18.369 28.299 46.400 1.00 7.04 C ATOM 2668 O LYS 368 18.179 29.422 46.860 1.00 7.04 O ATOM 2669 CB LYS 368 20.130 28.333 44.693 1.00 7.04 C ATOM 2670 CG LYS 368 21.602 28.165 44.349 1.00 7.04 C ATOM 2671 CD LYS 368 21.905 28.688 42.955 1.00 7.04 C ATOM 2672 CE LYS 368 23.377 28.520 42.611 1.00 7.04 C ATOM 2673 NZ LYS 368 23.684 29.002 41.235 1.00 7.04 N ATOM 2674 N LYS 369 17.359 27.455 46.135 1.00 9.31 N ATOM 2675 CA LYS 369 15.998 27.887 46.199 1.00 9.31 C ATOM 2676 C LYS 369 15.348 27.629 47.504 1.00 9.31 C ATOM 2677 O LYS 369 15.474 26.570 48.118 1.00 9.31 O ATOM 2678 CB LYS 369 15.158 27.168 45.141 1.00 9.31 C ATOM 2679 CG LYS 369 13.689 27.562 45.143 1.00 9.31 C ATOM 2680 CD LYS 369 12.931 26.865 44.025 1.00 9.31 C ATOM 2681 CE LYS 369 11.462 27.256 44.029 1.00 9.31 C ATOM 2682 NZ LYS 369 10.720 26.641 42.893 1.00 9.31 N ATOM 2683 N GLY 370 14.591 28.669 47.893 1.00 8.72 N ATOM 2684 CA GLY 370 13.842 28.848 49.087 1.00 8.72 C ATOM 2685 C GLY 370 14.730 29.779 49.810 1.00 8.72 C ATOM 2686 O GLY 370 14.432 30.960 49.977 1.00 8.72 O ATOM 2687 N THR 371 15.912 29.243 50.149 1.00 7.60 N ATOM 2688 CA THR 371 16.974 29.953 50.773 1.00 7.60 C ATOM 2689 C THR 371 18.200 29.203 50.379 1.00 7.60 C ATOM 2690 O THR 371 18.141 28.291 49.555 1.00 7.60 O ATOM 2691 CB THR 371 16.811 29.982 52.304 1.00 7.60 C ATOM 2692 OG1 THR 371 17.773 30.880 52.872 1.00 7.60 O ATOM 2693 CG2 THR 371 17.025 28.595 52.890 1.00 7.60 C ATOM 2694 N ASN 372 19.355 29.592 50.936 1.00 6.29 N ATOM 2695 CA ASN 372 20.559 28.889 50.626 1.00 6.29 C ATOM 2696 C ASN 372 20.430 27.507 51.187 1.00 6.29 C ATOM 2697 O ASN 372 20.895 26.537 50.591 1.00 6.29 O ATOM 2698 CB ASN 372 21.767 29.593 51.247 1.00 6.29 C ATOM 2699 CG ASN 372 22.118 30.885 50.534 1.00 6.29 C ATOM 2700 OD1 ASN 372 21.746 31.088 49.379 1.00 6.29 O ATOM 2701 ND2 ASN 372 22.837 31.762 51.223 1.00 6.29 N ATOM 2702 N GLY 373 19.785 27.385 52.363 1.00 5.67 N ATOM 2703 CA GLY 373 19.677 26.105 53.000 1.00 5.67 C ATOM 2704 C GLY 373 18.575 25.308 52.377 1.00 5.67 C ATOM 2705 O GLY 373 17.780 25.811 51.585 1.00 5.67 O ATOM 2706 N TYR 374 18.522 24.014 52.754 1.00 4.44 N ATOM 2707 CA TYR 374 17.540 23.071 52.304 1.00 4.44 C ATOM 2708 C TYR 374 17.053 22.404 53.553 1.00 4.44 C ATOM 2709 O TYR 374 17.662 22.568 54.609 1.00 4.44 O ATOM 2710 CB TYR 374 18.168 22.061 51.341 1.00 4.44 C ATOM 2711 CG TYR 374 19.217 21.177 51.979 1.00 4.44 C ATOM 2712 CD1 TYR 374 18.878 19.935 52.501 1.00 4.44 C ATOM 2713 CD2 TYR 374 20.541 21.588 52.058 1.00 4.44 C ATOM 2714 CE1 TYR 374 19.829 19.120 53.086 1.00 4.44 C ATOM 2715 CE2 TYR 374 21.505 20.787 52.640 1.00 4.44 C ATOM 2716 CZ TYR 374 21.138 19.544 53.155 1.00 4.44 C ATOM 2717 OH TYR 374 22.087 18.736 53.738 1.00 4.44 H ATOM 2718 N PRO 375 15.980 21.664 53.491 1.00 4.04 N ATOM 2719 CA PRO 375 15.530 21.009 54.681 1.00 4.04 C ATOM 2720 C PRO 375 16.549 20.082 55.248 1.00 4.04 C ATOM 2721 O PRO 375 16.391 19.674 56.397 1.00 4.04 O ATOM 2722 CB PRO 375 14.287 20.238 54.232 1.00 4.04 C ATOM 2723 CG PRO 375 14.477 20.044 52.764 1.00 4.04 C ATOM 2724 CD PRO 375 15.176 21.279 52.268 1.00 4.04 C ATOM 2725 N ILE 376 17.589 19.709 54.481 1.00 7.02 N ATOM 2726 CA ILE 376 18.610 18.951 55.135 1.00 7.02 C ATOM 2727 C ILE 376 19.390 20.001 55.843 1.00 7.02 C ATOM 2728 O ILE 376 20.228 20.679 55.250 1.00 7.02 O ATOM 2729 CB ILE 376 19.474 18.176 54.122 1.00 7.02 C ATOM 2730 CG1 ILE 376 18.595 17.281 53.247 1.00 7.02 C ATOM 2731 CG2 ILE 376 20.485 17.301 54.844 1.00 7.02 C ATOM 2732 CD1 ILE 376 17.794 16.261 54.027 1.00 7.02 C ATOM 2733 N PHE 377 19.123 20.133 57.157 1.00 9.36 N ATOM 2734 CA PHE 377 19.641 21.189 57.974 1.00 9.36 C ATOM 2735 C PHE 377 21.110 21.332 57.766 1.00 9.36 C ATOM 2736 O PHE 377 21.862 20.361 57.784 1.00 9.36 O ATOM 2737 CB PHE 377 19.387 20.896 59.454 1.00 9.36 C ATOM 2738 CG PHE 377 19.879 21.972 60.379 1.00 9.36 C ATOM 2739 CD1 PHE 377 19.146 23.129 60.569 1.00 9.36 C ATOM 2740 CD2 PHE 377 21.075 21.825 61.060 1.00 9.36 C ATOM 2741 CE1 PHE 377 19.599 24.120 61.419 1.00 9.36 C ATOM 2742 CE2 PHE 377 21.528 22.816 61.910 1.00 9.36 C ATOM 2743 CZ PHE 377 20.795 23.960 62.092 1.00 9.36 C ATOM 2744 N GLN 378 21.534 22.589 57.536 1.00 12.57 N ATOM 2745 CA GLN 378 22.909 22.916 57.323 1.00 12.57 C ATOM 2746 C GLN 378 23.058 24.356 57.682 1.00 12.57 C ATOM 2747 O GLN 378 22.136 24.966 58.223 1.00 12.57 O ATOM 2748 CB GLN 378 23.293 22.685 55.860 1.00 12.57 C ATOM 2749 CG GLN 378 22.512 23.534 54.871 1.00 12.57 C ATOM 2750 CD GLN 378 23.110 24.915 54.687 1.00 12.57 C ATOM 2751 OE1 GLN 378 24.329 25.069 54.615 1.00 12.57 O ATOM 2752 NE2 GLN 378 22.251 25.925 54.611 1.00 12.57 N ATOM 2753 N TRP 379 24.239 24.936 57.411 1.00 12.19 N ATOM 2754 CA TRP 379 24.425 26.314 57.746 1.00 12.19 C ATOM 2755 C TRP 379 23.407 27.084 56.974 1.00 12.19 C ATOM 2756 O TRP 379 23.204 26.852 55.784 1.00 12.19 O ATOM 2757 CB TRP 379 25.836 26.772 57.371 1.00 12.19 C ATOM 2758 CG TRP 379 26.911 26.144 58.204 1.00 12.19 C ATOM 2759 CD1 TRP 379 27.794 25.180 57.811 1.00 12.19 C ATOM 2760 CD2 TRP 379 27.218 26.437 59.573 1.00 12.19 C ATOM 2761 NE1 TRP 379 28.632 24.852 58.850 1.00 12.19 N ATOM 2762 CE2 TRP 379 28.298 25.612 59.943 1.00 12.19 C ATOM 2763 CE3 TRP 379 26.685 27.314 60.521 1.00 12.19 C ATOM 2764 CZ2 TRP 379 28.855 25.639 61.221 1.00 12.19 C ATOM 2765 CZ3 TRP 379 27.241 27.338 61.787 1.00 12.19 C ATOM 2766 CH2 TRP 379 28.313 26.508 62.127 1.00 12.19 H ATOM 2767 N SER 380 22.718 28.017 57.657 1.00 12.84 N ATOM 2768 CA SER 380 21.730 28.827 57.015 1.00 12.84 C ATOM 2769 C SER 380 21.940 30.204 57.538 1.00 12.84 C ATOM 2770 O SER 380 22.609 30.396 58.552 1.00 12.84 O ATOM 2771 CB SER 380 20.324 28.323 57.349 1.00 12.84 C ATOM 2772 OG SER 380 20.049 28.463 58.732 1.00 12.84 O ATOM 2773 N GLU 381 21.388 31.216 56.845 1.00 11.43 N ATOM 2774 CA GLU 381 21.577 32.549 57.324 1.00 11.43 C ATOM 2775 C GLU 381 20.657 32.738 58.522 1.00 11.43 C ATOM 2776 O GLU 381 20.710 33.835 59.140 1.00 11.43 O ATOM 2777 CB GLU 381 21.230 33.564 56.233 1.00 11.43 C ATOM 2778 CG GLU 381 22.114 33.477 55.000 1.00 11.43 C ATOM 2779 CD GLU 381 21.627 34.362 53.869 1.00 11.43 C ATOM 2780 OE1 GLU 381 20.565 34.999 54.030 1.00 11.43 O ATOM 2781 OE2 GLU 381 22.308 34.418 52.824 1.00 11.43 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 107.62 23.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 118.97 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 103.17 26.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 127.58 10.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.57 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 99.44 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 62.36 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.70 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 79.34 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.54 59.1 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 69.92 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 42.01 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 62.54 60.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 50.55 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 38.89 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 42.51 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 44.84 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 38.89 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.78 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 3.78 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 3.78 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.80 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.80 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2195 CRMSCA SECONDARY STRUCTURE . . 6.04 11 100.0 11 CRMSCA SURFACE . . . . . . . . 6.71 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.24 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.89 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.08 54 100.0 54 CRMSMC SURFACE . . . . . . . . 6.81 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.33 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.01 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 10.19 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 10.43 41 100.0 41 CRMSSC SURFACE . . . . . . . . 9.95 119 99.2 120 CRMSSC BURIED . . . . . . . . 10.58 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.54 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 8.35 85 100.0 85 CRMSALL SURFACE . . . . . . . . 8.56 223 99.6 224 CRMSALL BURIED . . . . . . . . 8.35 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.867 0.198 0.173 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 3.241 0.243 0.215 11 100.0 11 ERRCA SURFACE . . . . . . . . 2.845 0.190 0.182 26 100.0 26 ERRCA BURIED . . . . . . . . 2.979 0.238 0.130 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.876 0.195 0.171 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 2.959 0.216 0.189 54 100.0 54 ERRMC SURFACE . . . . . . . . 2.855 0.188 0.178 129 100.0 129 ERRMC BURIED . . . . . . . . 2.998 0.237 0.130 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.407 0.251 0.176 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 4.502 0.254 0.179 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 5.415 0.309 0.205 41 100.0 41 ERRSC SURFACE . . . . . . . . 4.287 0.242 0.175 119 99.2 120 ERRSC BURIED . . . . . . . . 5.841 0.367 0.184 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.589 0.220 0.172 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 4.033 0.255 0.195 85 100.0 85 ERRALL SURFACE . . . . . . . . 3.568 0.213 0.176 223 99.6 224 ERRALL BURIED . . . . . . . . 3.751 0.269 0.143 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 8 30 31 31 DISTCA CA (P) 0.00 0.00 0.00 25.81 96.77 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.06 6.62 DISTCA ALL (N) 0 0 1 49 195 253 254 DISTALL ALL (P) 0.00 0.00 0.39 19.29 76.77 254 DISTALL ALL (RMS) 0.00 0.00 2.64 4.18 6.67 DISTALL END of the results output