####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS029_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS029_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 351 - 370 4.90 13.32 LCS_AVERAGE: 59.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 373 - 379 1.69 16.41 LCS_AVERAGE: 17.48 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 370 - 374 0.57 16.13 LCS_AVERAGE: 12.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 20 3 3 3 4 4 6 6 9 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT A 352 A 352 3 4 20 3 3 3 4 4 6 9 10 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT E 353 E 353 4 5 20 4 4 4 5 6 7 9 13 14 15 16 17 18 19 21 23 24 24 25 25 LCS_GDT E 354 E 354 4 5 20 4 4 4 5 6 7 9 13 14 14 16 17 18 20 21 23 24 24 25 25 LCS_GDT L 355 L 355 4 5 20 4 4 4 5 6 7 9 13 14 14 16 16 18 19 21 23 24 24 25 25 LCS_GDT G 356 G 356 4 5 20 4 4 4 5 6 7 9 13 14 14 16 17 18 20 21 23 24 24 25 25 LCS_GDT N 357 N 357 3 5 20 3 4 5 6 7 7 9 13 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT I 358 I 358 3 4 20 3 4 5 6 7 7 9 13 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT I 359 I 359 3 4 20 3 3 5 6 7 7 9 13 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT V 360 V 360 4 4 20 3 3 5 6 6 6 9 13 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT A 361 A 361 4 4 20 3 3 4 4 6 6 9 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT W 362 W 362 4 5 20 3 3 4 5 7 7 9 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT N 363 N 363 4 6 20 3 3 5 6 7 7 9 13 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT P 364 P 364 4 6 20 3 3 4 5 7 7 9 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT N 365 N 365 4 6 20 3 3 4 5 7 7 9 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT L 366 L 366 4 6 20 3 3 4 5 7 7 9 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT W 367 W 367 4 6 20 3 3 4 5 5 6 8 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT K 368 K 368 3 6 20 0 3 4 5 7 7 9 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT K 369 K 369 3 3 20 1 3 4 4 6 6 8 11 14 15 16 17 18 20 21 23 24 24 25 25 LCS_GDT G 370 G 370 5 6 20 4 5 5 5 6 6 7 9 13 14 16 17 18 20 21 23 24 24 25 25 LCS_GDT T 371 T 371 5 6 19 4 5 5 5 6 6 7 9 13 14 16 17 18 20 21 23 24 24 25 25 LCS_GDT N 372 N 372 5 6 19 4 5 5 5 6 6 8 8 13 14 16 17 18 20 21 23 24 24 25 25 LCS_GDT G 373 G 373 5 7 19 4 5 5 5 7 7 9 9 13 14 15 16 18 19 21 23 24 24 25 25 LCS_GDT Y 374 Y 374 5 7 19 3 5 5 5 7 7 9 9 12 14 15 16 16 17 19 21 24 24 25 25 LCS_GDT P 375 P 375 4 7 18 3 4 5 6 7 7 9 9 10 12 15 16 16 17 20 21 22 23 25 25 LCS_GDT I 376 I 376 4 7 15 3 4 5 6 7 7 9 9 10 12 16 16 17 17 20 21 22 22 23 25 LCS_GDT F 377 F 377 4 7 12 3 3 5 5 7 7 9 13 14 14 16 16 17 18 20 21 22 22 23 25 LCS_GDT Q 378 Q 378 4 7 12 3 4 5 6 7 7 9 11 14 14 16 16 17 18 20 21 22 22 23 25 LCS_GDT W 379 W 379 4 7 12 3 3 5 5 7 7 9 13 14 14 16 16 17 18 20 21 22 22 23 25 LCS_GDT S 380 S 380 4 4 12 3 3 4 6 6 6 8 13 14 14 16 16 17 18 20 21 22 22 23 25 LCS_GDT E 381 E 381 4 4 10 3 3 4 6 6 6 8 13 14 14 16 16 17 18 20 21 22 22 23 25 LCS_AVERAGE LCS_A: 29.73 ( 12.70 17.48 59.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 7 9 13 14 15 16 17 18 20 21 23 24 24 25 25 GDT PERCENT_AT 12.90 16.13 16.13 19.35 22.58 22.58 29.03 41.94 45.16 48.39 51.61 54.84 58.06 64.52 67.74 74.19 77.42 77.42 80.65 80.65 GDT RMS_LOCAL 0.15 0.57 0.57 1.16 1.52 1.52 2.73 3.30 3.43 3.58 3.71 3.94 4.16 4.94 5.13 5.51 5.85 5.85 6.18 6.18 GDT RMS_ALL_AT 15.98 16.13 16.13 10.77 10.87 10.87 10.24 11.23 14.19 13.90 13.97 13.90 13.91 12.72 12.71 12.47 12.20 12.20 11.94 11.94 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: Y 374 Y 374 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 10.062 0 0.652 0.569 10.751 3.214 2.222 LGA A 352 A 352 9.893 0 0.037 0.045 11.669 3.214 2.571 LGA E 353 E 353 3.709 0 0.587 1.104 5.432 42.381 57.619 LGA E 354 E 354 3.752 0 0.050 0.206 4.797 42.024 37.407 LGA L 355 L 355 3.558 0 0.347 0.853 5.823 45.119 37.976 LGA G 356 G 356 2.995 0 0.639 0.639 4.821 47.143 47.143 LGA N 357 N 357 3.963 0 0.612 1.133 9.684 53.810 30.060 LGA I 358 I 358 1.937 0 0.606 0.626 5.205 70.952 55.179 LGA I 359 I 359 3.882 0 0.590 0.750 5.163 40.714 37.500 LGA V 360 V 360 3.704 0 0.634 0.649 6.112 43.452 36.259 LGA A 361 A 361 7.838 0 0.131 0.132 10.258 8.571 6.857 LGA W 362 W 362 7.930 0 0.610 0.942 19.504 19.405 5.578 LGA N 363 N 363 3.226 0 0.315 0.813 5.925 33.571 39.345 LGA P 364 P 364 7.648 0 0.578 0.513 10.994 7.857 8.367 LGA N 365 N 365 9.508 0 0.202 0.376 13.286 1.905 9.524 LGA L 366 L 366 11.894 0 0.597 1.353 13.923 0.000 0.000 LGA W 367 W 367 14.511 0 0.641 1.307 18.694 0.000 0.000 LGA K 368 K 368 16.138 0 0.603 1.027 24.101 0.000 0.000 LGA K 369 K 369 15.156 0 0.622 0.945 18.192 0.000 0.000 LGA G 370 G 370 21.092 0 0.601 0.601 23.015 0.000 0.000 LGA T 371 T 371 26.416 0 0.099 1.120 29.712 0.000 0.000 LGA N 372 N 372 23.311 0 0.287 1.265 24.136 0.000 0.000 LGA G 373 G 373 19.384 0 0.694 0.694 20.637 0.000 0.000 LGA Y 374 Y 374 14.202 0 0.087 1.313 23.794 0.000 0.000 LGA P 375 P 375 9.851 0 0.096 0.396 10.697 2.024 3.265 LGA I 376 I 376 8.127 0 0.246 1.078 14.969 8.333 4.167 LGA F 377 F 377 3.511 0 0.122 0.850 5.306 38.810 38.615 LGA Q 378 Q 378 5.321 0 0.667 0.914 9.096 30.238 15.503 LGA W 379 W 379 1.726 0 0.574 0.940 11.145 81.667 34.558 LGA S 380 S 380 2.856 0 0.186 0.644 4.960 62.976 53.413 LGA E 381 E 381 3.216 0 0.164 1.148 6.468 35.833 42.524 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 9.113 9.036 10.057 23.329 19.537 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 3.30 37.903 31.521 0.382 LGA_LOCAL RMSD: 3.304 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.233 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 9.113 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.146865 * X + -0.630994 * Y + 0.761759 * Z + -18.363819 Y_new = 0.856860 * X + 0.303594 * Y + 0.416679 * Z + 12.909791 Z_new = -0.494188 * X + 0.713916 * Y + 0.496086 * Z + 34.112503 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.740546 0.516901 0.963515 [DEG: 99.7259 29.6162 55.2053 ] ZXZ: 2.071330 1.051711 -0.605486 [DEG: 118.6785 60.2586 -34.6918 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS029_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS029_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 3.30 31.521 9.11 REMARK ---------------------------------------------------------- MOLECULE T0537TS029_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2qy1_A ATOM 3113 N SER 351 7.733 10.854 60.474 1.00 0.00 N ATOM 3114 CA SER 351 8.464 10.166 59.447 1.00 0.00 C ATOM 3115 C SER 351 7.516 9.584 58.442 1.00 0.00 C ATOM 3116 O SER 351 7.880 9.347 57.292 1.00 0.00 O ATOM 3117 H SER 351 7.646 10.483 61.289 1.00 0.00 H ATOM 3118 CB SER 351 9.343 9.071 60.056 1.00 0.00 C ATOM 3119 HG SER 351 8.093 7.690 59.992 1.00 0.00 H ATOM 3120 OG SER 351 8.555 8.025 60.594 1.00 0.00 O ATOM 3121 N ALA 352 6.264 9.336 58.861 1.00 0.00 N ATOM 3122 CA ALA 352 5.291 8.679 58.038 1.00 0.00 C ATOM 3123 C ALA 352 4.987 9.498 56.824 1.00 0.00 C ATOM 3124 O ALA 352 4.748 8.955 55.746 1.00 0.00 O ATOM 3125 H ALA 352 6.046 9.599 59.693 1.00 0.00 H ATOM 3126 CB ALA 352 4.020 8.413 58.830 1.00 0.00 C ATOM 3127 N GLU 353 5.005 10.833 56.976 1.00 0.00 N ATOM 3128 CA GLU 353 4.543 11.714 55.949 1.00 0.00 C ATOM 3129 C GLU 353 5.242 11.416 54.654 1.00 0.00 C ATOM 3130 O GLU 353 6.447 11.191 54.581 1.00 0.00 O ATOM 3131 H GLU 353 5.317 11.168 57.750 1.00 0.00 H ATOM 3132 CB GLU 353 4.765 13.173 56.355 1.00 0.00 C ATOM 3133 CD GLU 353 4.123 15.089 57.868 1.00 0.00 C ATOM 3134 CG GLU 353 3.893 13.634 57.511 1.00 0.00 C ATOM 3135 OE1 GLU 353 5.237 15.420 58.328 1.00 0.00 O ATOM 3136 OE2 GLU 353 3.190 15.900 57.690 1.00 0.00 O ATOM 3137 N GLU 354 4.445 11.447 53.574 1.00 0.00 N ATOM 3138 CA GLU 354 4.807 11.028 52.256 1.00 0.00 C ATOM 3139 C GLU 354 5.941 11.807 51.703 1.00 0.00 C ATOM 3140 O GLU 354 6.749 11.240 50.959 1.00 0.00 O ATOM 3141 H GLU 354 3.620 11.765 53.734 1.00 0.00 H ATOM 3142 CB GLU 354 3.608 11.137 51.311 1.00 0.00 C ATOM 3143 CD GLU 354 1.311 10.306 50.673 1.00 0.00 C ATOM 3144 CG GLU 354 2.514 10.118 51.577 1.00 0.00 C ATOM 3145 OE1 GLU 354 1.248 11.339 49.975 1.00 0.00 O ATOM 3146 OE2 GLU 354 0.430 9.420 50.664 1.00 0.00 O ATOM 3147 N LEU 355 6.043 13.116 51.991 1.00 0.00 N ATOM 3148 CA LEU 355 7.137 13.649 51.250 1.00 0.00 C ATOM 3149 C LEU 355 8.086 14.211 52.231 1.00 0.00 C ATOM 3150 O LEU 355 8.798 15.168 51.917 1.00 0.00 O ATOM 3151 H LEU 355 5.565 13.651 52.535 1.00 0.00 H ATOM 3152 CB LEU 355 6.646 14.698 50.250 1.00 0.00 C ATOM 3153 CG LEU 355 5.958 14.163 48.992 1.00 0.00 C ATOM 3154 CD1 LEU 355 4.534 13.727 49.303 1.00 0.00 C ATOM 3155 CD2 LEU 355 5.960 15.214 47.891 1.00 0.00 C ATOM 3156 N GLY 356 8.120 13.644 53.442 1.00 0.00 N ATOM 3157 CA GLY 356 9.102 14.125 54.350 1.00 0.00 C ATOM 3158 C GLY 356 10.371 13.538 53.857 1.00 0.00 C ATOM 3159 O GLY 356 10.416 12.362 53.499 1.00 0.00 O ATOM 3160 H GLY 356 7.558 12.987 53.692 1.00 0.00 H ATOM 3161 N ASN 357 11.441 14.343 53.794 1.00 0.00 N ATOM 3162 CA ASN 357 12.649 13.736 53.344 1.00 0.00 C ATOM 3163 C ASN 357 13.412 13.368 54.558 1.00 0.00 C ATOM 3164 O ASN 357 13.353 14.059 55.575 1.00 0.00 O ATOM 3165 H ASN 357 11.431 15.215 54.015 1.00 0.00 H ATOM 3166 CB ASN 357 13.413 14.685 52.420 1.00 0.00 C ATOM 3167 CG ASN 357 14.608 14.023 51.764 1.00 0.00 C ATOM 3168 OD1 ASN 357 15.725 14.084 52.279 1.00 0.00 O ATOM 3169 HD21 ASN 357 15.052 12.974 50.191 1.00 0.00 H ATOM 3170 HD22 ASN 357 13.546 13.363 50.278 1.00 0.00 H ATOM 3171 ND2 ASN 357 14.377 13.385 50.622 1.00 0.00 N ATOM 3172 N ILE 358 14.144 12.245 54.489 1.00 0.00 N ATOM 3173 CA ILE 358 14.888 11.862 55.641 1.00 0.00 C ATOM 3174 C ILE 358 15.972 12.865 55.792 1.00 0.00 C ATOM 3175 O ILE 358 16.747 13.121 54.872 1.00 0.00 O ATOM 3176 H ILE 358 14.175 11.739 53.745 1.00 0.00 H ATOM 3177 CB ILE 358 15.429 10.426 55.512 1.00 0.00 C ATOM 3178 CD1 ILE 358 14.709 8.023 55.055 1.00 0.00 C ATOM 3179 CG1 ILE 358 14.274 9.427 55.415 1.00 0.00 C ATOM 3180 CG2 ILE 358 16.363 10.103 56.668 1.00 0.00 C ATOM 3181 N ILE 359 16.003 13.527 56.957 1.00 0.00 N ATOM 3182 CA ILE 359 17.077 14.426 57.205 1.00 0.00 C ATOM 3183 C ILE 359 17.541 14.226 58.599 1.00 0.00 C ATOM 3184 O ILE 359 16.751 14.055 59.525 1.00 0.00 O ATOM 3185 H ILE 359 15.361 13.411 57.576 1.00 0.00 H ATOM 3186 CB ILE 359 16.657 15.888 56.958 1.00 0.00 C ATOM 3187 CD1 ILE 359 17.279 15.871 54.487 1.00 0.00 C ATOM 3188 CG1 ILE 359 16.188 16.070 55.515 1.00 0.00 C ATOM 3189 CG2 ILE 359 17.795 16.834 57.308 1.00 0.00 C ATOM 3190 N VAL 360 18.874 14.222 58.762 1.00 0.00 N ATOM 3191 CA VAL 360 19.469 14.022 60.039 1.00 0.00 C ATOM 3192 C VAL 360 20.512 15.077 60.170 1.00 0.00 C ATOM 3193 O VAL 360 20.962 15.650 59.181 1.00 0.00 O ATOM 3194 H VAL 360 19.394 14.349 58.038 1.00 0.00 H ATOM 3195 CB VAL 360 20.042 12.600 60.179 1.00 0.00 C ATOM 3196 CG1 VAL 360 20.722 12.429 61.529 1.00 0.00 C ATOM 3197 CG2 VAL 360 18.945 11.562 59.996 1.00 0.00 C ATOM 3198 N ALA 361 20.874 15.400 61.421 1.00 0.00 N ATOM 3199 CA ALA 361 21.892 16.369 61.675 1.00 0.00 C ATOM 3200 C ALA 361 23.195 15.830 61.177 1.00 0.00 C ATOM 3201 O ALA 361 24.008 16.565 60.616 1.00 0.00 O ATOM 3202 H ALA 361 20.460 14.993 62.108 1.00 0.00 H ATOM 3203 CB ALA 361 21.954 16.697 63.159 1.00 0.00 C ATOM 3204 N TRP 362 23.423 14.515 61.351 1.00 0.00 N ATOM 3205 CA TRP 362 24.723 13.991 61.056 1.00 0.00 C ATOM 3206 C TRP 362 24.742 13.225 59.774 1.00 0.00 C ATOM 3207 O TRP 362 23.734 12.688 59.318 1.00 0.00 O ATOM 3208 H TRP 362 22.774 13.966 61.648 1.00 0.00 H ATOM 3209 CB TRP 362 25.211 13.094 62.196 1.00 0.00 C ATOM 3210 HB2 TRP 362 26.220 12.880 62.106 1.00 0.00 H ATOM 3211 HB3 TRP 362 24.530 12.472 62.582 1.00 0.00 H ATOM 3212 CG TRP 362 25.453 13.830 63.477 1.00 0.00 C ATOM 3213 CD1 TRP 362 24.537 14.108 64.450 1.00 0.00 C ATOM 3214 HE1 TRP 362 24.691 15.097 66.251 1.00 0.00 H ATOM 3215 NE1 TRP 362 25.129 14.801 65.477 1.00 0.00 N ATOM 3216 CD2 TRP 362 26.696 14.385 63.927 1.00 0.00 C ATOM 3217 CE2 TRP 362 26.457 14.982 65.178 1.00 0.00 C ATOM 3218 CH2 TRP 362 28.714 15.653 65.359 1.00 0.00 C ATOM 3219 CZ2 TRP 362 27.460 15.621 65.904 1.00 0.00 C ATOM 3220 CE3 TRP 362 27.988 14.432 63.394 1.00 0.00 C ATOM 3221 CZ3 TRP 362 28.979 15.067 64.118 1.00 0.00 C ATOM 3222 N ASN 363 25.947 13.189 59.166 1.00 0.00 N ATOM 3223 CA ASN 363 26.213 12.545 57.915 1.00 0.00 C ATOM 3224 C ASN 363 26.213 11.078 58.163 1.00 0.00 C ATOM 3225 O ASN 363 26.248 10.620 59.306 1.00 0.00 O ATOM 3226 H ASN 363 26.609 13.611 59.604 1.00 0.00 H ATOM 3227 CB ASN 363 27.535 13.043 57.326 1.00 0.00 C ATOM 3228 CG ASN 363 28.734 12.631 58.156 1.00 0.00 C ATOM 3229 OD1 ASN 363 28.770 11.533 58.711 1.00 0.00 O ATOM 3230 HD21 ASN 363 30.458 13.320 58.725 1.00 0.00 H ATOM 3231 HD22 ASN 363 29.657 14.307 57.823 1.00 0.00 H ATOM 3232 ND2 ASN 363 29.723 13.514 58.244 1.00 0.00 N ATOM 3233 N PRO 364 26.155 10.322 57.110 1.00 0.00 N ATOM 3234 CA PRO 364 26.063 8.923 57.352 1.00 0.00 C ATOM 3235 C PRO 364 27.132 8.273 58.161 1.00 0.00 C ATOM 3236 O PRO 364 28.272 8.144 57.717 1.00 0.00 O ATOM 3237 CB PRO 364 26.075 8.302 55.953 1.00 0.00 C ATOM 3238 CD PRO 364 26.097 10.671 55.609 1.00 0.00 C ATOM 3239 CG PRO 364 25.555 9.380 55.063 1.00 0.00 C ATOM 3240 N ASN 365 26.724 7.866 59.368 1.00 0.00 N ATOM 3241 CA ASN 365 27.360 6.957 60.263 1.00 0.00 C ATOM 3242 C ASN 365 26.151 6.124 60.394 1.00 0.00 C ATOM 3243 O ASN 365 26.131 4.982 60.852 1.00 0.00 O ATOM 3244 H ASN 365 25.941 8.246 59.594 1.00 0.00 H ATOM 3245 CB ASN 365 27.902 7.701 61.485 1.00 0.00 C ATOM 3246 CG ASN 365 29.025 8.658 61.134 1.00 0.00 C ATOM 3247 OD1 ASN 365 30.154 8.239 60.880 1.00 0.00 O ATOM 3248 HD21 ASN 365 29.347 10.560 60.918 1.00 0.00 H ATOM 3249 HD22 ASN 365 27.878 10.214 61.313 1.00 0.00 H ATOM 3250 ND2 ASN 365 28.717 9.950 61.120 1.00 0.00 N ATOM 3251 N LEU 366 25.090 6.806 59.914 1.00 0.00 N ATOM 3252 CA LEU 366 23.763 6.351 59.686 1.00 0.00 C ATOM 3253 C LEU 366 23.862 6.080 58.223 1.00 0.00 C ATOM 3254 O LEU 366 23.701 6.969 57.387 1.00 0.00 O ATOM 3255 H LEU 366 25.311 7.659 59.731 1.00 0.00 H ATOM 3256 CB LEU 366 22.751 7.416 60.111 1.00 0.00 C ATOM 3257 CG LEU 366 22.798 7.849 61.578 1.00 0.00 C ATOM 3258 CD1 LEU 366 21.806 8.973 61.839 1.00 0.00 C ATOM 3259 CD2 LEU 366 22.514 6.670 62.495 1.00 0.00 C ATOM 3260 N TRP 367 24.140 4.811 57.899 1.00 0.00 N ATOM 3261 CA TRP 367 24.501 4.379 56.585 1.00 0.00 C ATOM 3262 C TRP 367 23.399 4.557 55.595 1.00 0.00 C ATOM 3263 O TRP 367 23.677 4.756 54.415 1.00 0.00 O ATOM 3264 H TRP 367 24.088 4.214 58.571 1.00 0.00 H ATOM 3265 CB TRP 367 24.927 2.909 56.602 1.00 0.00 C ATOM 3266 HB2 TRP 367 25.419 2.668 57.480 1.00 0.00 H ATOM 3267 HB3 TRP 367 25.122 2.502 55.710 1.00 0.00 H ATOM 3268 CG TRP 367 23.813 1.966 56.936 1.00 0.00 C ATOM 3269 CD1 TRP 367 23.483 1.492 58.174 1.00 0.00 C ATOM 3270 HE1 TRP 367 22.004 0.205 58.808 1.00 0.00 H ATOM 3271 NE1 TRP 367 22.403 0.647 58.085 1.00 0.00 N ATOM 3272 CD2 TRP 367 22.881 1.380 56.019 1.00 0.00 C ATOM 3273 CE2 TRP 367 22.016 0.563 56.770 1.00 0.00 C ATOM 3274 CH2 TRP 367 20.819 -0.060 54.833 1.00 0.00 C ATOM 3275 CZ2 TRP 367 20.979 -0.163 56.186 1.00 0.00 C ATOM 3276 CE3 TRP 367 22.694 1.466 54.636 1.00 0.00 C ATOM 3277 CZ3 TRP 367 21.665 0.745 54.062 1.00 0.00 C ATOM 3278 N LYS 368 22.126 4.504 56.028 1.00 0.00 N ATOM 3279 CA LYS 368 21.046 4.565 55.082 1.00 0.00 C ATOM 3280 C LYS 368 21.155 5.799 54.241 1.00 0.00 C ATOM 3281 O LYS 368 20.936 5.738 53.031 1.00 0.00 O ATOM 3282 H LYS 368 21.950 4.431 56.908 1.00 0.00 H ATOM 3283 CB LYS 368 19.698 4.530 55.806 1.00 0.00 C ATOM 3284 CD LYS 368 18.023 3.226 57.145 1.00 0.00 C ATOM 3285 CE LYS 368 17.694 1.885 57.778 1.00 0.00 C ATOM 3286 CG LYS 368 19.363 3.184 56.428 1.00 0.00 C ATOM 3287 HZ1 LYS 368 16.244 1.124 58.879 1.00 0.00 H ATOM 3288 HZ2 LYS 368 15.746 2.135 57.962 1.00 0.00 H ATOM 3289 HZ3 LYS 368 16.452 2.533 59.168 1.00 0.00 H ATOM 3290 NZ LYS 368 16.404 1.923 58.522 1.00 0.00 N ATOM 3291 N LYS 369 21.510 6.954 54.828 1.00 0.00 N ATOM 3292 CA LYS 369 21.603 8.111 53.989 1.00 0.00 C ATOM 3293 C LYS 369 22.660 7.886 52.960 1.00 0.00 C ATOM 3294 O LYS 369 22.505 8.288 51.810 1.00 0.00 O ATOM 3295 H LYS 369 21.686 7.021 55.709 1.00 0.00 H ATOM 3296 CB LYS 369 21.904 9.357 54.824 1.00 0.00 C ATOM 3297 CD LYS 369 21.150 10.957 56.605 1.00 0.00 C ATOM 3298 CE LYS 369 21.540 12.209 55.836 1.00 0.00 C ATOM 3299 CG LYS 369 20.732 9.839 55.663 1.00 0.00 C ATOM 3300 HZ1 LYS 369 22.095 14.053 56.267 1.00 0.00 H ATOM 3301 HZ2 LYS 369 22.554 13.108 57.271 1.00 0.00 H ATOM 3302 HZ3 LYS 369 21.164 13.531 57.253 1.00 0.00 H ATOM 3303 NZ LYS 369 21.872 13.339 56.748 1.00 0.00 N ATOM 3304 N GLY 370 23.766 7.226 53.335 1.00 0.00 N ATOM 3305 CA GLY 370 24.829 7.079 52.387 1.00 0.00 C ATOM 3306 C GLY 370 24.333 6.328 51.191 1.00 0.00 C ATOM 3307 O GLY 370 24.635 6.696 50.056 1.00 0.00 O ATOM 3308 H GLY 370 23.849 6.881 54.162 1.00 0.00 H ATOM 3309 N THR 371 23.570 5.241 51.408 1.00 0.00 N ATOM 3310 CA THR 371 23.110 4.460 50.295 1.00 0.00 C ATOM 3311 C THR 371 22.133 5.240 49.467 1.00 0.00 C ATOM 3312 O THR 371 22.246 5.284 48.242 1.00 0.00 O ATOM 3313 H THR 371 23.349 5.003 52.246 1.00 0.00 H ATOM 3314 CB THR 371 22.458 3.145 50.759 1.00 0.00 C ATOM 3315 HG1 THR 371 23.695 2.774 52.124 1.00 0.00 H ATOM 3316 OG1 THR 371 23.423 2.353 51.463 1.00 0.00 O ATOM 3317 CG2 THR 371 21.955 2.349 49.564 1.00 0.00 C ATOM 3318 N ASN 372 21.155 5.896 50.117 1.00 0.00 N ATOM 3319 CA ASN 372 20.135 6.607 49.401 1.00 0.00 C ATOM 3320 C ASN 372 20.754 7.753 48.670 1.00 0.00 C ATOM 3321 O ASN 372 20.397 8.041 47.528 1.00 0.00 O ATOM 3322 H ASN 372 21.148 5.884 51.017 1.00 0.00 H ATOM 3323 CB ASN 372 19.036 7.076 50.357 1.00 0.00 C ATOM 3324 CG ASN 372 18.156 5.938 50.836 1.00 0.00 C ATOM 3325 OD1 ASN 372 18.092 4.882 50.206 1.00 0.00 O ATOM 3326 HD21 ASN 372 16.935 5.508 52.283 1.00 0.00 H ATOM 3327 HD22 ASN 372 17.547 6.938 52.385 1.00 0.00 H ATOM 3328 ND2 ASN 372 17.473 6.151 51.955 1.00 0.00 N ATOM 3329 N GLY 373 21.721 8.425 49.315 1.00 0.00 N ATOM 3330 CA GLY 373 22.341 9.586 48.754 1.00 0.00 C ATOM 3331 C GLY 373 21.841 10.734 49.564 1.00 0.00 C ATOM 3332 O GLY 373 20.647 10.836 49.846 1.00 0.00 O ATOM 3333 H GLY 373 21.976 8.126 50.125 1.00 0.00 H ATOM 3334 N TYR 374 22.757 11.634 49.969 1.00 0.00 N ATOM 3335 CA TYR 374 22.362 12.723 50.811 1.00 0.00 C ATOM 3336 C TYR 374 22.949 13.987 50.277 1.00 0.00 C ATOM 3337 O TYR 374 24.096 14.023 49.833 1.00 0.00 O ATOM 3338 H TYR 374 23.616 11.551 49.713 1.00 0.00 H ATOM 3339 CB TYR 374 22.804 12.474 52.254 1.00 0.00 C ATOM 3340 CG TYR 374 24.304 12.408 52.433 1.00 0.00 C ATOM 3341 HH TYR 374 28.714 13.002 53.111 1.00 0.00 H ATOM 3342 OH TYR 374 28.429 12.244 52.927 1.00 0.00 O ATOM 3343 CZ TYR 374 27.064 12.297 52.764 1.00 0.00 C ATOM 3344 CD1 TYR 374 25.033 13.548 52.747 1.00 0.00 C ATOM 3345 CE1 TYR 374 26.404 13.497 52.912 1.00 0.00 C ATOM 3346 CD2 TYR 374 24.985 11.206 52.287 1.00 0.00 C ATOM 3347 CE2 TYR 374 26.356 11.138 52.449 1.00 0.00 C ATOM 3348 N PRO 375 22.154 15.020 50.266 1.00 0.00 N ATOM 3349 CA PRO 375 22.662 16.317 49.922 1.00 0.00 C ATOM 3350 C PRO 375 23.200 16.908 51.181 1.00 0.00 C ATOM 3351 O PRO 375 22.739 16.524 52.256 1.00 0.00 O ATOM 3352 CB PRO 375 21.440 17.059 49.374 1.00 0.00 C ATOM 3353 CD PRO 375 20.606 15.029 50.330 1.00 0.00 C ATOM 3354 CG PRO 375 20.287 16.484 50.125 1.00 0.00 C ATOM 3355 N ILE 376 24.168 17.837 51.098 1.00 0.00 N ATOM 3356 CA ILE 376 24.627 18.412 52.324 1.00 0.00 C ATOM 3357 C ILE 376 24.209 19.842 52.324 1.00 0.00 C ATOM 3358 O ILE 376 24.587 20.621 51.450 1.00 0.00 O ATOM 3359 H ILE 376 24.526 18.100 50.315 1.00 0.00 H ATOM 3360 CB ILE 376 26.151 18.258 52.484 1.00 0.00 C ATOM 3361 CD1 ILE 376 28.031 16.537 52.420 1.00 0.00 C ATOM 3362 CG1 ILE 376 26.539 16.777 52.491 1.00 0.00 C ATOM 3363 CG2 ILE 376 26.630 18.975 53.736 1.00 0.00 C ATOM 3364 N PHE 377 23.367 20.221 53.301 1.00 0.00 N ATOM 3365 CA PHE 377 22.964 21.590 53.359 1.00 0.00 C ATOM 3366 C PHE 377 23.472 22.148 54.641 1.00 0.00 C ATOM 3367 O PHE 377 23.171 21.649 55.724 1.00 0.00 O ATOM 3368 H PHE 377 23.057 19.634 53.910 1.00 0.00 H ATOM 3369 CB PHE 377 21.443 21.708 53.244 1.00 0.00 C ATOM 3370 CG PHE 377 20.896 21.227 51.929 1.00 0.00 C ATOM 3371 CZ PHE 377 19.884 20.344 49.496 1.00 0.00 C ATOM 3372 CD1 PHE 377 20.611 19.887 51.730 1.00 0.00 C ATOM 3373 CE1 PHE 377 20.108 19.445 50.522 1.00 0.00 C ATOM 3374 CD2 PHE 377 20.667 22.114 50.893 1.00 0.00 C ATOM 3375 CE2 PHE 377 20.164 21.672 49.684 1.00 0.00 C ATOM 3376 N GLN 378 24.265 23.227 54.520 1.00 0.00 N ATOM 3377 CA GLN 378 24.890 23.860 55.640 1.00 0.00 C ATOM 3378 C GLN 378 23.873 24.781 56.206 1.00 0.00 C ATOM 3379 O GLN 378 22.846 25.043 55.583 1.00 0.00 O ATOM 3380 H GLN 378 24.396 23.549 53.691 1.00 0.00 H ATOM 3381 CB GLN 378 26.166 24.582 55.203 1.00 0.00 C ATOM 3382 CD GLN 378 27.731 22.637 55.585 1.00 0.00 C ATOM 3383 CG GLN 378 27.220 23.669 54.599 1.00 0.00 C ATOM 3384 OE1 GLN 378 28.197 22.980 56.672 1.00 0.00 O ATOM 3385 HE21 GLN 378 27.935 20.714 55.757 1.00 0.00 H ATOM 3386 HE22 GLN 378 27.298 21.158 54.405 1.00 0.00 H ATOM 3387 NE2 GLN 378 27.646 21.367 55.208 1.00 0.00 N ATOM 3388 N TRP 379 24.101 25.283 57.428 1.00 0.00 N ATOM 3389 CA TRP 379 23.117 26.220 57.847 1.00 0.00 C ATOM 3390 C TRP 379 23.811 27.537 57.731 1.00 0.00 C ATOM 3391 O TRP 379 24.750 27.819 58.473 1.00 0.00 O ATOM 3392 H TRP 379 24.790 25.081 57.971 1.00 0.00 H ATOM 3393 CB TRP 379 22.635 25.895 59.262 1.00 0.00 C ATOM 3394 HB2 TRP 379 21.764 26.406 59.493 1.00 0.00 H ATOM 3395 HB3 TRP 379 23.348 25.659 59.921 1.00 0.00 H ATOM 3396 CG TRP 379 21.923 24.581 59.366 1.00 0.00 C ATOM 3397 CD1 TRP 379 21.333 23.886 58.351 1.00 0.00 C ATOM 3398 HE1 TRP 379 20.324 22.090 58.311 1.00 0.00 H ATOM 3399 NE1 TRP 379 20.780 22.723 58.829 1.00 0.00 N ATOM 3400 CD2 TRP 379 21.726 23.804 60.553 1.00 0.00 C ATOM 3401 CE2 TRP 379 21.010 22.651 60.180 1.00 0.00 C ATOM 3402 CH2 TRP 379 21.011 21.856 62.405 1.00 0.00 C ATOM 3403 CZ2 TRP 379 20.646 21.669 61.100 1.00 0.00 C ATOM 3404 CE3 TRP 379 22.086 23.969 61.894 1.00 0.00 C ATOM 3405 CZ3 TRP 379 21.724 22.992 62.801 1.00 0.00 C ATOM 3406 N SER 380 23.357 28.374 56.779 1.00 0.00 N ATOM 3407 CA SER 380 23.972 29.639 56.509 1.00 0.00 C ATOM 3408 C SER 380 23.457 30.611 57.513 1.00 0.00 C ATOM 3409 O SER 380 22.821 30.239 58.494 1.00 0.00 O ATOM 3410 H SER 380 22.638 28.112 56.304 1.00 0.00 H ATOM 3411 CB SER 380 23.675 30.085 55.075 1.00 0.00 C ATOM 3412 HG SER 380 22.107 31.028 55.433 1.00 0.00 H ATOM 3413 OG SER 380 22.305 30.409 54.916 1.00 0.00 O ATOM 3414 N GLU 381 23.772 31.898 57.322 1.00 0.00 N ATOM 3415 CA GLU 381 23.273 32.935 58.163 1.00 0.00 C ATOM 3416 C GLU 381 23.782 32.796 59.586 1.00 0.00 C ATOM 3417 O GLU 381 23.267 31.921 60.334 1.00 0.00 O ATOM 3418 H GLU 381 24.318 32.099 56.635 1.00 0.00 H ATOM 3419 OXT GLU 381 24.704 33.559 59.980 1.00 0.00 O ATOM 3420 CB GLU 381 21.743 32.938 58.158 1.00 0.00 C ATOM 3421 CD GLU 381 19.613 33.262 56.838 1.00 0.00 C ATOM 3422 CG GLU 381 21.126 33.184 56.790 1.00 0.00 C ATOM 3423 OE1 GLU 381 19.044 33.085 57.936 1.00 0.00 O ATOM 3424 OE2 GLU 381 18.997 33.502 55.779 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.34 43.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 102.17 40.9 22 100.0 22 ARMSMC SURFACE . . . . . . . . 90.20 46.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 112.78 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.42 46.2 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 89.14 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 52.24 75.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 92.17 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 33.32 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.47 45.5 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 74.27 56.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 80.82 42.9 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 70.64 50.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 105.43 0.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.54 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 69.76 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 38.82 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 73.54 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 4.19 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 4.19 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 4.19 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.11 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.11 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2940 CRMSCA SECONDARY STRUCTURE . . 7.38 11 100.0 11 CRMSCA SURFACE . . . . . . . . 9.34 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.85 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.18 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.53 54 100.0 54 CRMSMC SURFACE . . . . . . . . 9.41 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.79 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.10 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 11.32 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 9.93 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.41 120 100.0 120 CRMSSC BURIED . . . . . . . . 6.18 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.15 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.68 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.45 224 100.0 224 CRMSALL BURIED . . . . . . . . 7.46 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.486 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 7.178 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 8.763 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 7.046 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.521 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 7.293 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 8.806 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 6.921 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.308 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 10.546 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 9.147 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 10.702 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 5.588 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.382 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 8.123 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 9.750 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 6.635 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 24 31 31 DISTCA CA (P) 0.00 0.00 0.00 12.90 77.42 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.15 7.31 DISTCA ALL (N) 0 1 4 29 158 254 254 DISTALL ALL (P) 0.00 0.39 1.57 11.42 62.20 254 DISTALL ALL (RMS) 0.00 1.82 2.31 4.10 7.24 DISTALL END of the results output