####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS028_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS028_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 362 - 373 4.89 27.30 LCS_AVERAGE: 36.52 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 365 - 372 1.71 29.57 LCS_AVERAGE: 18.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 357 - 360 0.88 27.39 LONGEST_CONTINUOUS_SEGMENT: 4 362 - 365 0.62 25.89 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.23 30.66 LONGEST_CONTINUOUS_SEGMENT: 4 375 - 378 0.97 30.91 LCS_AVERAGE: 11.13 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 10 0 3 3 3 3 3 4 5 6 6 7 7 9 9 10 10 11 13 13 13 LCS_GDT A 352 A 352 3 3 10 0 3 3 3 3 4 4 5 6 6 7 7 9 10 12 12 12 13 14 14 LCS_GDT E 353 E 353 3 3 11 3 3 3 3 3 4 4 5 6 7 8 8 10 11 12 12 13 13 14 14 LCS_GDT E 354 E 354 3 4 11 3 3 3 3 4 4 4 6 7 7 9 9 10 11 12 12 13 13 14 14 LCS_GDT L 355 L 355 3 4 11 3 3 3 3 4 4 4 6 7 7 9 9 10 11 12 12 13 13 14 14 LCS_GDT G 356 G 356 3 4 11 0 3 3 3 4 4 5 6 7 8 9 9 10 11 12 12 13 13 14 14 LCS_GDT N 357 N 357 4 4 11 3 3 4 4 4 4 5 6 7 8 9 9 10 11 12 12 13 13 14 14 LCS_GDT I 358 I 358 4 4 11 3 3 4 4 4 4 5 6 7 8 9 9 10 11 12 12 13 13 14 14 LCS_GDT I 359 I 359 4 4 11 3 3 4 4 4 4 5 6 7 8 9 9 10 11 12 12 13 13 14 14 LCS_GDT V 360 V 360 4 4 11 0 3 4 4 4 4 5 6 7 8 9 9 10 11 12 12 13 13 14 14 LCS_GDT A 361 A 361 3 5 11 0 3 3 3 3 5 5 6 7 8 9 9 10 11 12 12 13 13 14 14 LCS_GDT W 362 W 362 4 5 12 3 4 4 4 4 5 5 5 7 9 10 10 11 11 12 12 13 13 14 14 LCS_GDT N 363 N 363 4 5 12 3 4 4 4 4 5 5 8 9 10 10 10 11 11 12 12 13 13 14 14 LCS_GDT P 364 P 364 4 5 12 3 4 4 4 4 5 8 9 9 10 10 10 11 11 12 12 13 13 14 14 LCS_GDT N 365 N 365 4 8 12 3 4 4 6 8 8 8 9 9 10 10 10 11 11 12 12 13 13 14 14 LCS_GDT L 366 L 366 3 8 12 3 3 5 6 8 8 8 9 9 10 10 10 11 11 11 11 12 13 13 14 LCS_GDT W 367 W 367 3 8 12 3 3 5 6 8 8 8 9 9 10 10 10 11 11 11 11 11 12 12 12 LCS_GDT K 368 K 368 3 8 12 3 3 4 5 8 8 8 9 9 10 10 10 11 11 11 11 11 12 12 12 LCS_GDT K 369 K 369 3 8 12 3 3 4 5 8 8 8 9 9 10 10 10 11 11 11 11 11 12 12 12 LCS_GDT G 370 G 370 3 8 12 3 3 5 6 8 8 8 9 9 10 10 10 11 11 11 11 11 12 12 12 LCS_GDT T 371 T 371 3 8 12 3 3 5 6 8 8 8 9 9 10 10 10 11 11 11 11 11 12 12 12 LCS_GDT N 372 N 372 3 8 12 0 3 5 6 8 8 8 9 9 10 10 10 11 11 11 11 11 12 12 12 LCS_GDT G 373 G 373 4 7 12 4 4 4 5 5 7 7 8 8 9 9 9 10 10 10 11 11 12 12 12 LCS_GDT Y 374 Y 374 4 7 11 4 4 4 5 5 7 7 8 8 9 9 9 10 10 10 11 11 12 12 12 LCS_GDT P 375 P 375 4 7 11 4 4 4 5 5 7 7 8 8 9 9 9 10 10 10 11 11 11 11 12 LCS_GDT I 376 I 376 4 7 11 4 4 4 5 5 7 7 8 8 9 9 9 10 10 10 11 11 11 11 11 LCS_GDT F 377 F 377 4 7 11 3 3 4 5 5 7 7 8 8 9 9 9 10 10 10 11 11 11 11 11 LCS_GDT Q 378 Q 378 4 7 11 3 3 4 5 5 7 7 8 8 9 9 9 10 10 10 11 11 11 11 11 LCS_GDT W 379 W 379 3 7 11 3 3 3 4 5 7 7 8 8 9 9 9 10 10 10 11 11 11 11 11 LCS_GDT S 380 S 380 3 5 11 3 3 3 4 4 4 5 5 8 9 9 9 10 10 10 11 11 11 11 11 LCS_GDT E 381 E 381 3 5 11 3 3 3 4 5 7 7 8 8 9 9 9 10 10 10 11 11 11 11 11 LCS_AVERAGE LCS_A: 22.13 ( 11.13 18.73 36.52 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 5 6 8 8 8 9 9 10 10 10 11 11 12 12 13 13 14 14 GDT PERCENT_AT 12.90 12.90 16.13 19.35 25.81 25.81 25.81 29.03 29.03 32.26 32.26 32.26 35.48 35.48 38.71 38.71 41.94 41.94 45.16 45.16 GDT RMS_LOCAL 0.23 0.23 1.18 1.38 1.71 1.71 1.71 2.53 2.53 3.34 3.34 3.34 4.10 4.10 5.28 5.28 5.57 5.57 6.04 6.04 GDT RMS_ALL_AT 30.66 30.66 29.47 29.47 29.57 29.57 29.57 28.47 28.47 27.56 27.56 27.56 26.70 26.70 30.94 30.94 31.46 31.46 32.33 32.33 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 58.472 0 0.000 0.686 58.472 0.000 0.000 LGA A 352 A 352 55.512 0 0.629 0.609 57.096 0.000 0.000 LGA E 353 E 353 50.247 0 0.608 1.265 52.194 0.000 0.000 LGA E 354 E 354 45.679 0 0.631 1.137 49.339 0.000 0.000 LGA L 355 L 355 41.665 0 0.614 1.074 46.694 0.000 0.000 LGA G 356 G 356 37.326 0 0.605 0.605 39.063 0.000 0.000 LGA N 357 N 357 32.283 0 0.619 0.845 34.046 0.000 0.000 LGA I 358 I 358 32.130 0 0.036 1.309 37.353 0.000 0.000 LGA I 359 I 359 28.245 0 0.583 1.011 31.117 0.000 0.000 LGA V 360 V 360 22.525 0 0.645 0.855 24.724 0.000 0.000 LGA A 361 A 361 16.742 0 0.692 0.640 18.951 0.000 0.000 LGA W 362 W 362 13.347 0 0.656 1.251 16.211 0.000 0.000 LGA N 363 N 363 8.592 0 0.174 0.235 10.374 5.714 9.464 LGA P 364 P 364 4.708 0 0.723 0.630 6.817 29.524 27.143 LGA N 365 N 365 2.261 0 0.702 0.748 6.447 59.881 42.917 LGA L 366 L 366 1.697 0 0.596 0.610 6.274 75.476 52.738 LGA W 367 W 367 0.597 0 0.077 1.281 12.115 79.524 33.265 LGA K 368 K 368 2.956 0 0.059 0.799 9.334 73.333 41.429 LGA K 369 K 369 1.553 0 0.162 1.064 10.501 70.952 43.016 LGA G 370 G 370 1.794 0 0.000 0.000 1.794 81.548 81.548 LGA T 371 T 371 2.424 0 0.647 0.609 6.300 70.952 51.973 LGA N 372 N 372 2.586 0 0.686 1.045 6.829 47.619 41.429 LGA G 373 G 373 9.043 0 0.697 0.697 11.556 2.857 2.857 LGA Y 374 Y 374 14.396 0 0.131 1.181 20.806 0.000 0.000 LGA P 375 P 375 18.112 0 0.088 0.139 21.486 0.000 0.000 LGA I 376 I 376 23.852 0 0.225 1.173 25.548 0.000 0.000 LGA F 377 F 377 28.901 0 0.102 1.331 35.363 0.000 0.000 LGA Q 378 Q 378 31.856 0 0.633 0.528 34.293 0.000 0.000 LGA W 379 W 379 36.484 0 0.718 1.132 41.779 0.000 0.000 LGA S 380 S 380 36.940 0 0.078 0.646 38.673 0.000 0.000 LGA E 381 E 381 34.470 0 0.048 1.020 35.934 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 19.849 19.795 19.356 19.270 13.799 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 9 2.53 25.000 24.434 0.343 LGA_LOCAL RMSD: 2.526 Number of atoms: 9 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 28.472 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 19.849 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.017025 * X + 0.901709 * Y + 0.432007 * Z + 412.542572 Y_new = -0.697561 * X + -0.298835 * Y + 0.651235 * Z + -384.585602 Z_new = 0.716323 * X + -0.312439 * Y + 0.623910 * Z + 36.294258 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.546394 -0.798518 -0.464268 [DEG: -88.6019 -45.7517 -26.6006 ] ZXZ: 2.555878 0.897061 1.982090 [DEG: 146.4410 51.3978 113.5654 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS028_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS028_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 9 2.53 24.434 19.85 REMARK ---------------------------------------------------------- MOLECULE T0537TS028_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2vji_A ATOM 2529 N SER 351 52.147 -14.500 72.404 1.00220.90 N ATOM 2530 CA SER 351 52.233 -13.085 72.188 1.00220.90 C ATOM 2531 CB SER 351 52.418 -12.700 70.709 1.00220.90 C ATOM 2532 OG SER 351 53.648 -13.207 70.217 1.00220.90 O ATOM 2533 C SER 351 50.949 -12.473 72.635 1.00220.90 C ATOM 2534 O SER 351 49.902 -13.119 72.635 1.00220.90 O ATOM 2535 N ALA 352 51.012 -11.193 73.054 1.00262.39 N ATOM 2536 CA ALA 352 49.833 -10.508 73.492 1.00262.39 C ATOM 2537 CB ALA 352 49.893 -10.072 74.964 1.00262.39 C ATOM 2538 C ALA 352 49.717 -9.269 72.668 1.00262.39 C ATOM 2539 O ALA 352 50.718 -8.637 72.332 1.00262.39 O ATOM 2540 N GLU 353 48.475 -8.896 72.302 1.00330.20 N ATOM 2541 CA GLU 353 48.297 -7.717 71.511 1.00330.20 C ATOM 2542 CB GLU 353 47.768 -8.001 70.095 1.00330.20 C ATOM 2543 CG GLU 353 47.618 -6.747 69.231 1.00330.20 C ATOM 2544 CD GLU 353 49.005 -6.302 68.788 1.00330.20 C ATOM 2545 OE1 GLU 353 50.005 -6.822 69.351 1.00330.20 O ATOM 2546 OE2 GLU 353 49.083 -5.432 67.880 1.00330.20 O ATOM 2547 C GLU 353 47.279 -6.868 72.194 1.00330.20 C ATOM 2548 O GLU 353 46.389 -7.373 72.875 1.00330.20 O ATOM 2549 N GLU 354 47.402 -5.535 72.046 1.00289.84 N ATOM 2550 CA GLU 354 46.427 -4.680 72.650 1.00289.84 C ATOM 2551 CB GLU 354 46.997 -3.339 73.145 1.00289.84 C ATOM 2552 CG GLU 354 45.947 -2.443 73.803 1.00289.84 C ATOM 2553 CD GLU 354 45.617 -3.036 75.165 1.00289.84 C ATOM 2554 OE1 GLU 354 46.288 -4.029 75.555 1.00289.84 O ATOM 2555 OE2 GLU 354 44.694 -2.506 75.836 1.00289.84 O ATOM 2556 C GLU 354 45.427 -4.378 71.586 1.00289.84 C ATOM 2557 O GLU 354 45.772 -3.863 70.524 1.00289.84 O ATOM 2558 N LEU 355 44.149 -4.716 71.843 1.00252.07 N ATOM 2559 CA LEU 355 43.144 -4.504 70.847 1.00252.07 C ATOM 2560 CB LEU 355 42.577 -5.812 70.271 1.00252.07 C ATOM 2561 CG LEU 355 43.619 -6.649 69.506 1.00252.07 C ATOM 2562 CD1 LEU 355 44.773 -7.081 70.424 1.00252.07 C ATOM 2563 CD2 LEU 355 42.958 -7.835 68.786 1.00252.07 C ATOM 2564 C LEU 355 42.006 -3.777 71.479 1.00252.07 C ATOM 2565 O LEU 355 41.916 -3.668 72.700 1.00252.07 O ATOM 2566 N GLY 356 41.108 -3.237 70.634 1.00107.34 N ATOM 2567 CA GLY 356 39.945 -2.567 71.128 1.00107.34 C ATOM 2568 C GLY 356 40.181 -1.096 71.080 1.00107.34 C ATOM 2569 O GLY 356 41.315 -0.624 71.148 1.00107.34 O ATOM 2570 N ASN 357 39.077 -0.336 70.959 1.00221.69 N ATOM 2571 CA ASN 357 39.133 1.093 70.921 1.00221.69 C ATOM 2572 CB ASN 357 38.413 1.686 69.695 1.00221.69 C ATOM 2573 CG ASN 357 38.819 3.145 69.525 1.00221.69 C ATOM 2574 OD1 ASN 357 38.801 3.934 70.467 1.00221.69 O ATOM 2575 ND2 ASN 357 39.200 3.520 68.273 1.00221.69 N ATOM 2576 C ASN 357 38.408 1.541 72.145 1.00221.69 C ATOM 2577 O ASN 357 37.459 0.893 72.582 1.00221.69 O ATOM 2578 N ILE 358 38.846 2.658 72.752 1.00183.65 N ATOM 2579 CA ILE 358 38.202 3.078 73.957 1.00183.65 C ATOM 2580 CB ILE 358 38.844 4.296 74.570 1.00183.65 C ATOM 2581 CG2 ILE 358 38.822 5.443 73.545 1.00183.65 C ATOM 2582 CG1 ILE 358 38.175 4.636 75.914 1.00183.65 C ATOM 2583 CD1 ILE 358 38.413 3.591 77.003 1.00183.65 C ATOM 2584 C ILE 358 36.771 3.383 73.654 1.00183.65 C ATOM 2585 O ILE 358 35.873 2.921 74.356 1.00183.65 O ATOM 2586 N ILE 359 36.504 4.156 72.584 1.00122.19 N ATOM 2587 CA ILE 359 35.136 4.461 72.302 1.00122.19 C ATOM 2588 CB ILE 359 34.709 5.803 72.819 1.00122.19 C ATOM 2589 CG2 ILE 359 35.474 6.878 72.030 1.00122.19 C ATOM 2590 CG1 ILE 359 33.181 5.947 72.743 1.00122.19 C ATOM 2591 CD1 ILE 359 32.432 4.993 73.672 1.00122.19 C ATOM 2592 C ILE 359 34.934 4.479 70.825 1.00122.19 C ATOM 2593 O ILE 359 35.840 4.806 70.061 1.00122.19 O ATOM 2594 N VAL 360 33.719 4.095 70.389 1.00111.71 N ATOM 2595 CA VAL 360 33.363 4.158 69.004 1.00111.71 C ATOM 2596 CB VAL 360 33.169 2.817 68.361 1.00111.71 C ATOM 2597 CG1 VAL 360 31.979 2.112 69.036 1.00111.71 C ATOM 2598 CG2 VAL 360 32.990 3.022 66.846 1.00111.71 C ATOM 2599 C VAL 360 32.046 4.858 68.972 1.00111.71 C ATOM 2600 O VAL 360 31.244 4.713 69.892 1.00111.71 O ATOM 2601 N ALA 361 31.786 5.656 67.921 1.00250.05 N ATOM 2602 CA ALA 361 30.536 6.352 67.917 1.00250.05 C ATOM 2603 CB ALA 361 30.606 7.745 68.565 1.00250.05 C ATOM 2604 C ALA 361 30.100 6.560 66.506 1.00250.05 C ATOM 2605 O ALA 361 30.885 6.448 65.565 1.00250.05 O ATOM 2606 N TRP 362 28.796 6.849 66.345 1.00329.01 N ATOM 2607 CA TRP 362 28.232 7.153 65.067 1.00329.01 C ATOM 2608 CB TRP 362 26.847 6.521 64.839 1.00329.01 C ATOM 2609 CG TRP 362 26.145 7.018 63.599 1.00329.01 C ATOM 2610 CD2 TRP 362 26.329 6.483 62.279 1.00329.01 C ATOM 2611 CD1 TRP 362 25.244 8.036 63.481 1.00329.01 C ATOM 2612 NE1 TRP 362 24.853 8.168 62.171 1.00329.01 N ATOM 2613 CE2 TRP 362 25.513 7.219 61.420 1.00329.01 C ATOM 2614 CE3 TRP 362 27.113 5.463 61.820 1.00329.01 C ATOM 2615 CZ2 TRP 362 25.467 6.945 60.083 1.00329.01 C ATOM 2616 CZ3 TRP 362 27.064 5.189 60.470 1.00329.01 C ATOM 2617 CH2 TRP 362 26.257 5.917 59.619 1.00329.01 C ATOM 2618 C TRP 362 28.055 8.632 65.044 1.00329.01 C ATOM 2619 O TRP 362 27.668 9.235 66.044 1.00329.01 O ATOM 2620 N ASN 363 28.356 9.263 63.895 1.00200.39 N ATOM 2621 CA ASN 363 28.225 10.685 63.835 1.00200.39 C ATOM 2622 CB ASN 363 29.378 11.382 63.090 1.00200.39 C ATOM 2623 CG ASN 363 29.232 12.885 63.291 1.00200.39 C ATOM 2624 OD1 ASN 363 28.264 13.357 63.885 1.00200.39 O ATOM 2625 ND2 ASN 363 30.225 13.660 62.780 1.00200.39 N ATOM 2626 C ASN 363 26.972 10.995 63.088 1.00200.39 C ATOM 2627 O ASN 363 26.709 10.464 62.011 1.00200.39 O ATOM 2628 N PRO 364 26.181 11.841 63.680 1.00175.78 N ATOM 2629 CA PRO 364 24.969 12.250 63.032 1.00175.78 C ATOM 2630 CD PRO 364 26.040 11.811 65.128 1.00175.78 C ATOM 2631 CB PRO 364 24.090 12.850 64.126 1.00175.78 C ATOM 2632 CG PRO 364 24.565 12.139 65.404 1.00175.78 C ATOM 2633 C PRO 364 25.333 13.216 61.958 1.00175.78 C ATOM 2634 O PRO 364 26.429 13.773 62.013 1.00175.78 O ATOM 2635 N ASN 365 24.455 13.421 60.960 1.00230.60 N ATOM 2636 CA ASN 365 24.791 14.363 59.935 1.00230.60 C ATOM 2637 CB ASN 365 24.725 13.794 58.505 1.00230.60 C ATOM 2638 CG ASN 365 25.444 14.751 57.556 1.00230.60 C ATOM 2639 OD1 ASN 365 25.968 15.787 57.963 1.00230.60 O ATOM 2640 ND2 ASN 365 25.481 14.385 56.245 1.00230.60 N ATOM 2641 C ASN 365 23.800 15.473 60.022 1.00230.60 C ATOM 2642 O ASN 365 22.634 15.264 60.355 1.00230.60 O ATOM 2643 N LEU 366 24.263 16.701 59.737 1.00303.68 N ATOM 2644 CA LEU 366 23.401 17.840 59.793 1.00303.68 C ATOM 2645 CB LEU 366 24.150 19.176 59.655 1.00303.68 C ATOM 2646 CG LEU 366 23.223 20.406 59.707 1.00303.68 C ATOM 2647 CD1 LEU 366 22.512 20.519 61.066 1.00303.68 C ATOM 2648 CD2 LEU 366 23.974 21.689 59.314 1.00303.68 C ATOM 2649 C LEU 366 22.458 17.748 58.645 1.00303.68 C ATOM 2650 O LEU 366 22.844 17.370 57.540 1.00303.68 O ATOM 2651 N TRP 367 21.176 18.076 58.896 1.00294.86 N ATOM 2652 CA TRP 367 20.208 18.071 57.842 1.00294.86 C ATOM 2653 CB TRP 367 19.174 16.933 57.926 1.00294.86 C ATOM 2654 CG TRP 367 18.253 17.013 59.118 1.00294.86 C ATOM 2655 CD2 TRP 367 18.536 16.439 60.404 1.00294.86 C ATOM 2656 CD1 TRP 367 17.029 17.606 59.223 1.00294.86 C ATOM 2657 NE1 TRP 367 16.532 17.439 60.493 1.00294.86 N ATOM 2658 CE2 TRP 367 17.450 16.722 61.232 1.00294.86 C ATOM 2659 CE3 TRP 367 19.614 15.735 60.858 1.00294.86 C ATOM 2660 CZ2 TRP 367 17.424 16.302 62.530 1.00294.86 C ATOM 2661 CZ3 TRP 367 19.585 15.312 62.168 1.00294.86 C ATOM 2662 CH2 TRP 367 18.512 15.590 62.988 1.00294.86 C ATOM 2663 C TRP 367 19.450 19.351 57.957 1.00294.86 C ATOM 2664 O TRP 367 19.394 19.956 59.026 1.00294.86 O ATOM 2665 N LYS 368 18.864 19.807 56.833 1.00287.54 N ATOM 2666 CA LYS 368 18.114 21.028 56.826 1.00287.54 C ATOM 2667 CB LYS 368 17.928 21.630 55.422 1.00287.54 C ATOM 2668 CG LYS 368 17.132 22.936 55.422 1.00287.54 C ATOM 2669 CD LYS 368 17.242 23.729 54.118 1.00287.54 C ATOM 2670 CE LYS 368 16.512 23.076 52.944 1.00287.54 C ATOM 2671 NZ LYS 368 15.052 23.099 53.185 1.00287.54 N ATOM 2672 C LYS 368 16.759 20.737 57.373 1.00287.54 C ATOM 2673 O LYS 368 16.247 19.629 57.222 1.00287.54 O ATOM 2674 N LYS 369 16.157 21.727 58.062 1.00285.56 N ATOM 2675 CA LYS 369 14.844 21.538 58.601 1.00285.56 C ATOM 2676 CB LYS 369 14.840 20.952 60.025 1.00285.56 C ATOM 2677 CG LYS 369 15.678 21.741 61.032 1.00285.56 C ATOM 2678 CD LYS 369 15.450 21.315 62.483 1.00285.56 C ATOM 2679 CE LYS 369 16.396 22.000 63.471 1.00285.56 C ATOM 2680 NZ LYS 369 16.072 23.440 63.559 1.00285.56 N ATOM 2681 C LYS 369 14.164 22.868 58.628 1.00285.56 C ATOM 2682 O LYS 369 14.735 23.877 58.218 1.00285.56 O ATOM 2683 N GLY 370 12.900 22.891 59.098 1.00106.73 N ATOM 2684 CA GLY 370 12.156 24.115 59.178 1.00106.73 C ATOM 2685 C GLY 370 11.096 24.093 58.124 1.00106.73 C ATOM 2686 O GLY 370 11.256 23.476 57.073 1.00106.73 O ATOM 2687 N THR 371 9.970 24.787 58.395 1.00266.08 N ATOM 2688 CA THR 371 8.879 24.826 57.467 1.00266.08 C ATOM 2689 CB THR 371 7.676 24.057 57.923 1.00266.08 C ATOM 2690 OG1 THR 371 7.156 24.629 59.114 1.00266.08 O ATOM 2691 CG2 THR 371 8.086 22.595 58.171 1.00266.08 C ATOM 2692 C THR 371 8.446 26.250 57.339 1.00266.08 C ATOM 2693 O THR 371 8.949 27.131 58.035 1.00266.08 O ATOM 2694 N ASN 372 7.502 26.512 56.415 1.00233.53 N ATOM 2695 CA ASN 372 7.012 27.844 56.210 1.00233.53 C ATOM 2696 CB ASN 372 7.279 28.391 54.791 1.00233.53 C ATOM 2697 CG ASN 372 6.838 29.851 54.736 1.00233.53 C ATOM 2698 OD1 ASN 372 5.689 30.164 54.427 1.00233.53 O ATOM 2699 ND2 ASN 372 7.783 30.777 55.051 1.00233.53 N ATOM 2700 C ASN 372 5.532 27.799 56.410 1.00233.53 C ATOM 2701 O ASN 372 4.921 26.730 56.400 1.00233.53 O ATOM 2702 N GLY 373 4.917 28.975 56.631 1.00111.49 N ATOM 2703 CA GLY 373 3.499 29.035 56.815 1.00111.49 C ATOM 2704 C GLY 373 3.232 29.017 58.280 1.00111.49 C ATOM 2705 O GLY 373 4.138 28.818 59.088 1.00111.49 O ATOM 2706 N TYR 374 1.957 29.231 58.654 1.00271.50 N ATOM 2707 CA TYR 374 1.590 29.246 60.035 1.00271.50 C ATOM 2708 CB TYR 374 1.035 30.608 60.490 1.00271.50 C ATOM 2709 CG TYR 374 0.899 30.599 61.972 1.00271.50 C ATOM 2710 CD1 TYR 374 2.006 30.785 62.767 1.00271.50 C ATOM 2711 CD2 TYR 374 -0.327 30.425 62.569 1.00271.50 C ATOM 2712 CE1 TYR 374 1.896 30.784 64.137 1.00271.50 C ATOM 2713 CE2 TYR 374 -0.443 30.423 63.939 1.00271.50 C ATOM 2714 CZ TYR 374 0.669 30.605 64.727 1.00271.50 C ATOM 2715 OH TYR 374 0.554 30.604 66.133 1.00271.50 O ATOM 2716 C TYR 374 0.512 28.222 60.180 1.00271.50 C ATOM 2717 O TYR 374 -0.260 27.974 59.253 1.00271.50 O ATOM 2718 N PRO 375 0.471 27.599 61.320 1.00163.85 N ATOM 2719 CA PRO 375 -0.509 26.571 61.529 1.00163.85 C ATOM 2720 CD PRO 375 1.706 27.321 62.036 1.00163.85 C ATOM 2721 CB PRO 375 -0.023 25.766 62.731 1.00163.85 C ATOM 2722 CG PRO 375 1.504 25.945 62.690 1.00163.85 C ATOM 2723 C PRO 375 -1.878 27.136 61.699 1.00163.85 C ATOM 2724 O PRO 375 -2.008 28.321 62.001 1.00163.85 O ATOM 2725 N ILE 376 -2.911 26.296 61.500 1.00 97.41 N ATOM 2726 CA ILE 376 -4.261 26.745 61.646 1.00 97.41 C ATOM 2727 CB ILE 376 -5.194 26.165 60.617 1.00 97.41 C ATOM 2728 CG2 ILE 376 -5.161 24.631 60.716 1.00 97.41 C ATOM 2729 CG1 ILE 376 -6.596 26.781 60.747 1.00 97.41 C ATOM 2730 CD1 ILE 376 -7.508 26.459 59.562 1.00 97.41 C ATOM 2731 C ILE 376 -4.713 26.312 63.000 1.00 97.41 C ATOM 2732 O ILE 376 -4.636 25.136 63.357 1.00 97.41 O ATOM 2733 N PHE 377 -5.174 27.283 63.809 1.00217.72 N ATOM 2734 CA PHE 377 -5.582 26.971 65.143 1.00217.72 C ATOM 2735 CB PHE 377 -5.062 27.996 66.167 1.00217.72 C ATOM 2736 CG PHE 377 -5.369 27.505 67.539 1.00217.72 C ATOM 2737 CD1 PHE 377 -4.518 26.622 68.165 1.00217.72 C ATOM 2738 CD2 PHE 377 -6.496 27.931 68.205 1.00217.72 C ATOM 2739 CE1 PHE 377 -4.789 26.165 69.433 1.00217.72 C ATOM 2740 CE2 PHE 377 -6.770 27.477 69.473 1.00217.72 C ATOM 2741 CZ PHE 377 -5.917 26.592 70.089 1.00217.72 C ATOM 2742 C PHE 377 -7.069 27.036 65.174 1.00217.72 C ATOM 2743 O PHE 377 -7.663 28.072 64.878 1.00217.72 O ATOM 2744 N GLN 378 -7.719 25.909 65.516 1.00223.14 N ATOM 2745 CA GLN 378 -9.146 25.955 65.596 1.00223.14 C ATOM 2746 CB GLN 378 -9.840 25.488 64.307 1.00223.14 C ATOM 2747 CG GLN 378 -9.578 26.437 63.136 1.00223.14 C ATOM 2748 CD GLN 378 -10.290 25.906 61.901 1.00223.14 C ATOM 2749 OE1 GLN 378 -10.802 24.788 61.880 1.00223.14 O ATOM 2750 NE2 GLN 378 -10.326 26.744 60.831 1.00223.14 N ATOM 2751 C GLN 378 -9.576 25.065 66.713 1.00223.14 C ATOM 2752 O GLN 378 -9.319 23.863 66.693 1.00223.14 O ATOM 2753 N TRP 379 -10.216 25.678 67.730 1.00309.08 N ATOM 2754 CA TRP 379 -10.769 25.030 68.886 1.00309.08 C ATOM 2755 CB TRP 379 -10.161 23.678 69.295 1.00309.08 C ATOM 2756 CG TRP 379 -10.761 22.482 68.593 1.00309.08 C ATOM 2757 CD2 TRP 379 -10.675 21.155 69.128 1.00309.08 C ATOM 2758 CD1 TRP 379 -11.499 22.388 67.447 1.00309.08 C ATOM 2759 NE1 TRP 379 -11.870 21.081 67.235 1.00309.08 N ATOM 2760 CE2 TRP 379 -11.371 20.311 68.265 1.00309.08 C ATOM 2761 CE3 TRP 379 -10.068 20.684 70.255 1.00309.08 C ATOM 2762 CZ2 TRP 379 -11.470 18.973 68.519 1.00309.08 C ATOM 2763 CZ3 TRP 379 -10.164 19.336 70.507 1.00309.08 C ATOM 2764 CH2 TRP 379 -10.852 18.497 69.655 1.00309.08 C ATOM 2765 C TRP 379 -10.652 25.954 70.045 1.00309.08 C ATOM 2766 O TRP 379 -10.255 27.109 69.907 1.00309.08 O ATOM 2767 N SER 380 -11.024 25.448 71.235 1.00154.03 N ATOM 2768 CA SER 380 -10.956 26.233 72.426 1.00154.03 C ATOM 2769 CB SER 380 -11.738 25.619 73.599 1.00154.03 C ATOM 2770 OG SER 380 -11.632 26.449 74.746 1.00154.03 O ATOM 2771 C SER 380 -9.517 26.313 72.823 1.00154.03 C ATOM 2772 O SER 380 -8.677 25.565 72.331 1.00154.03 O ATOM 2773 N GLU 381 -9.197 27.256 73.725 1.00108.86 N ATOM 2774 CA GLU 381 -7.841 27.394 74.158 1.00108.86 C ATOM 2775 CB GLU 381 -7.642 28.524 75.179 1.00108.86 C ATOM 2776 CG GLU 381 -6.172 28.785 75.507 1.00108.86 C ATOM 2777 CD GLU 381 -5.562 29.499 74.310 1.00108.86 C ATOM 2778 OE1 GLU 381 -6.338 29.866 73.389 1.00108.86 O ATOM 2779 OE2 GLU 381 -4.316 29.686 74.298 1.00108.86 O ATOM 2780 C GLU 381 -7.453 26.090 74.841 1.00108.86 C ATOM 2781 O GLU 381 -8.132 25.725 75.837 1.00108.86 O ATOM 2782 OXT GLU 381 -6.475 25.443 74.378 1.00108.86 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 103.77 25.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 126.07 9.1 22 100.0 22 ARMSMC SURFACE . . . . . . . . 100.04 24.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 120.72 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.78 34.6 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 93.22 36.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 93.36 25.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 94.90 34.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 84.67 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.69 40.9 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 68.54 43.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 93.85 0.0 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 67.52 40.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 69.30 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 54.03 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 55.72 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 7.34 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 54.03 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 113.71 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 113.71 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 113.71 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 19.85 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 19.85 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.6403 CRMSCA SECONDARY STRUCTURE . . 20.44 11 100.0 11 CRMSCA SURFACE . . . . . . . . 20.18 26 100.0 26 CRMSCA BURIED . . . . . . . . 18.01 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 19.81 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 20.35 54 100.0 54 CRMSMC SURFACE . . . . . . . . 20.06 129 100.0 129 CRMSMC BURIED . . . . . . . . 18.31 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 19.09 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 18.97 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 17.97 41 100.0 41 CRMSSC SURFACE . . . . . . . . 19.17 120 100.0 120 CRMSSC BURIED . . . . . . . . 18.12 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 19.44 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 19.29 85 100.0 85 CRMSALL SURFACE . . . . . . . . 19.60 224 100.0 224 CRMSALL BURIED . . . . . . . . 18.23 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 198.293 0.823 0.840 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 204.410 0.825 0.841 11 100.0 11 ERRCA SURFACE . . . . . . . . 216.242 0.836 0.852 26 100.0 26 ERRCA BURIED . . . . . . . . 104.959 0.752 0.780 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 200.452 0.825 0.842 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 206.634 0.828 0.844 54 100.0 54 ERRMC SURFACE . . . . . . . . 217.303 0.838 0.853 129 100.0 129 ERRMC BURIED . . . . . . . . 105.941 0.750 0.778 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 224.871 0.848 0.861 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 227.963 0.850 0.863 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 235.923 0.864 0.874 41 100.0 41 ERRSC SURFACE . . . . . . . . 234.111 0.855 0.867 120 100.0 120 ERRSC BURIED . . . . . . . . 113.985 0.767 0.791 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 211.899 0.836 0.851 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 219.567 0.844 0.857 85 100.0 85 ERRALL SURFACE . . . . . . . . 225.846 0.847 0.860 224 100.0 224 ERRALL BURIED . . . . . . . . 107.761 0.754 0.782 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 5 31 31 DISTCA CA (P) 0.00 0.00 0.00 0.00 16.13 31 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 9.06 DISTCA ALL (N) 0 0 0 0 36 254 254 DISTALL ALL (P) 0.00 0.00 0.00 0.00 14.17 254 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.84 DISTALL END of the results output