####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS018_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS018_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 364 - 372 4.71 40.63 LONGEST_CONTINUOUS_SEGMENT: 9 365 - 373 4.60 42.55 LONGEST_CONTINUOUS_SEGMENT: 9 372 - 380 4.88 53.40 LCS_AVERAGE: 23.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 373 - 378 1.95 52.18 LCS_AVERAGE: 13.84 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 366 - 369 0.83 42.32 LONGEST_CONTINUOUS_SEGMENT: 4 373 - 376 0.85 51.86 LONGEST_CONTINUOUS_SEGMENT: 4 374 - 377 0.65 51.98 LCS_AVERAGE: 5.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 0 3 4 0 0 0 0 3 3 3 3 3 3 4 4 4 5 5 5 6 6 6 7 LCS_GDT A 352 A 352 0 3 4 0 0 1 1 3 3 3 3 3 4 4 4 4 5 5 6 6 6 7 7 LCS_GDT E 353 E 353 0 3 5 0 0 1 1 3 3 3 3 3 4 4 4 5 5 5 6 6 6 7 7 LCS_GDT E 354 E 354 0 3 5 0 0 1 1 3 3 3 3 3 4 4 4 5 5 5 6 6 6 7 7 LCS_GDT L 355 L 355 0 3 5 0 0 1 2 3 3 3 3 3 4 4 4 5 5 5 6 6 6 7 7 LCS_GDT G 356 G 356 0 3 5 0 0 1 3 3 3 3 3 3 4 4 4 5 5 5 6 6 7 7 7 LCS_GDT N 357 N 357 0 3 5 0 0 1 3 3 3 3 3 3 4 4 4 5 5 6 6 6 7 7 7 LCS_GDT I 358 I 358 0 3 5 0 0 1 3 3 3 3 3 3 4 4 4 5 6 6 6 6 7 8 8 LCS_GDT I 359 I 359 0 3 5 0 0 1 3 3 3 3 3 4 4 4 5 5 6 6 6 7 7 8 8 LCS_GDT V 360 V 360 0 3 5 0 1 1 3 3 3 3 3 4 4 4 5 5 6 6 6 7 7 8 8 LCS_GDT A 361 A 361 0 3 6 0 0 1 3 3 3 3 3 4 5 5 5 6 6 6 6 7 7 8 8 LCS_GDT W 362 W 362 0 4 6 0 0 3 3 4 4 4 4 4 5 5 5 6 6 6 6 7 7 8 9 LCS_GDT N 363 N 363 0 4 6 0 1 3 3 4 4 4 4 4 5 5 5 6 6 7 8 9 9 10 10 LCS_GDT P 364 P 364 0 4 9 0 0 3 3 4 4 4 4 4 5 5 5 7 8 8 9 9 9 10 10 LCS_GDT N 365 N 365 0 4 9 0 0 3 3 4 4 5 6 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT L 366 L 366 4 5 9 0 3 4 4 4 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT W 367 W 367 4 5 9 1 3 4 4 5 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT K 368 K 368 4 5 9 1 3 4 4 5 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT K 369 K 369 4 5 9 0 3 4 4 5 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT G 370 G 370 3 5 9 0 3 3 4 5 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT T 371 T 371 3 5 9 0 3 3 4 5 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT N 372 N 372 0 5 9 0 1 3 3 4 5 6 7 7 8 8 8 8 8 8 9 9 9 10 10 LCS_GDT G 373 G 373 4 6 9 0 3 4 5 5 5 6 7 7 7 7 7 8 8 8 9 9 9 9 9 LCS_GDT Y 374 Y 374 4 6 9 3 4 4 5 5 5 6 7 7 7 7 7 8 8 8 8 8 9 9 9 LCS_GDT P 375 P 375 4 6 9 3 4 4 5 5 5 6 7 7 7 7 7 8 8 8 8 8 9 9 9 LCS_GDT I 376 I 376 4 6 9 3 4 4 5 5 5 6 7 7 7 7 7 8 8 8 8 8 9 9 9 LCS_GDT F 377 F 377 4 6 9 3 4 4 5 5 5 6 7 7 7 7 7 8 8 8 8 8 9 9 9 LCS_GDT Q 378 Q 378 3 6 9 3 3 4 5 5 5 6 7 7 7 7 7 8 8 8 8 8 9 9 9 LCS_GDT W 379 W 379 3 5 9 3 3 4 4 4 5 6 7 7 7 7 7 8 8 8 8 8 9 9 9 LCS_GDT S 380 S 380 3 4 9 3 3 4 4 4 4 4 5 6 6 6 6 8 8 8 8 8 9 9 9 LCS_GDT E 381 E 381 3 4 8 3 3 4 4 4 4 4 5 5 5 5 6 7 7 7 8 8 9 9 9 LCS_AVERAGE LCS_A: 14.36 ( 5.62 13.84 23.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 4 5 5 6 6 7 7 8 8 8 8 8 8 9 9 9 10 10 GDT PERCENT_AT 9.68 12.90 12.90 16.13 16.13 19.35 19.35 22.58 22.58 25.81 25.81 25.81 25.81 25.81 25.81 29.03 29.03 29.03 32.26 32.26 GDT RMS_LOCAL 0.17 0.65 0.65 1.15 1.15 2.10 1.95 2.52 2.52 3.18 3.18 3.18 3.18 3.18 3.18 4.60 4.60 4.60 5.93 5.93 GDT RMS_ALL_AT 51.67 51.98 51.98 51.80 51.80 41.43 52.18 51.87 51.87 41.66 41.66 41.66 41.66 41.66 41.66 42.55 42.55 42.55 39.95 39.95 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 92.152 0 0.390 0.658 93.706 0.000 0.000 LGA A 352 A 352 90.190 0 0.554 0.550 90.749 0.000 0.000 LGA E 353 E 353 86.315 0 0.540 1.001 87.171 0.000 0.000 LGA E 354 E 354 81.538 0 0.553 1.550 82.785 0.000 0.000 LGA L 355 L 355 79.173 0 0.553 0.513 79.686 0.000 0.000 LGA G 356 G 356 76.859 0 0.545 0.545 77.532 0.000 0.000 LGA N 357 N 357 72.876 0 0.531 1.224 73.769 0.000 0.000 LGA I 358 I 358 68.607 0 0.527 0.811 69.888 0.000 0.000 LGA I 359 I 359 66.705 0 0.513 0.992 67.268 0.000 0.000 LGA V 360 V 360 64.392 0 0.558 0.536 65.020 0.000 0.000 LGA A 361 A 361 60.440 0 0.627 0.592 61.278 0.000 0.000 LGA W 362 W 362 57.654 0 0.562 1.564 59.089 0.000 0.000 LGA N 363 N 363 56.577 0 0.295 0.853 60.666 0.000 0.000 LGA P 364 P 364 52.051 0 0.602 0.561 54.162 0.000 0.000 LGA N 365 N 365 51.206 0 0.645 1.382 51.985 0.000 0.000 LGA L 366 L 366 45.988 0 0.522 0.493 47.510 0.000 0.000 LGA W 367 W 367 38.082 0 0.167 1.177 40.813 0.000 0.000 LGA K 368 K 368 32.298 0 0.164 0.743 34.199 0.000 0.000 LGA K 369 K 369 24.681 0 0.200 1.503 27.438 0.000 0.000 LGA G 370 G 370 20.600 0 0.163 0.163 21.594 0.000 0.000 LGA T 371 T 371 15.796 0 0.575 0.519 18.705 0.000 0.000 LGA N 372 N 372 9.485 0 0.663 1.059 11.700 7.976 5.179 LGA G 373 G 373 3.579 0 0.651 0.651 6.061 41.905 41.905 LGA Y 374 Y 374 1.274 0 0.116 1.370 9.612 69.048 46.349 LGA P 375 P 375 0.934 0 0.425 0.584 4.494 70.714 71.837 LGA I 376 I 376 2.130 0 0.195 1.282 5.276 79.524 63.631 LGA F 377 F 377 1.060 0 0.054 1.209 4.960 79.286 64.113 LGA Q 378 Q 378 2.844 0 0.614 1.371 9.149 56.071 34.074 LGA W 379 W 379 3.904 0 0.686 1.336 9.053 37.024 23.707 LGA S 380 S 380 10.590 0 0.118 0.657 13.677 1.190 0.794 LGA E 381 E 381 15.619 0 0.546 1.218 20.809 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 32.588 32.589 32.354 14.282 11.342 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 7 2.52 20.161 18.584 0.268 LGA_LOCAL RMSD: 2.515 Number of atoms: 7 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 51.870 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 32.588 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.720585 * X + 0.657795 * Y + -0.219232 * Z + -145.641190 Y_new = -0.692686 * X + 0.668948 * Y + -0.269618 * Z + -49.125496 Z_new = -0.030699 * X + 0.346142 * Y + 0.937680 * Z + 35.934780 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.765660 0.030704 0.353629 [DEG: -43.8691 1.7592 20.2615 ] ZXZ: -0.682690 0.354904 -0.088457 [DEG: -39.1152 20.3345 -5.0682 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS018_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS018_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 7 2.52 18.584 32.59 REMARK ---------------------------------------------------------- MOLECULE T0537TS018_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 2z5eA 7ahlA 1gw6A ATOM 2529 N SER 351 -78.862 -15.743 19.388 1.00379.98 N ATOM 2530 CA SER 351 -77.646 -14.579 19.835 1.00379.98 C ATOM 2531 CB SER 351 -78.302 -13.415 20.602 1.00379.98 C ATOM 2532 OG SER 351 -77.321 -12.458 20.977 1.00379.98 O ATOM 2533 C SER 351 -75.970 -14.646 20.659 1.00379.98 C ATOM 2534 O SER 351 -75.610 -15.802 20.886 1.00379.98 O ATOM 2535 N ALA 352 -74.896 -13.548 21.128 1.00411.19 N ATOM 2536 CA ALA 352 -73.316 -13.437 21.828 1.00411.19 C ATOM 2537 CB ALA 352 -72.301 -14.191 20.947 1.00411.19 C ATOM 2538 C ALA 352 -72.267 -12.068 22.521 1.00411.19 C ATOM 2539 O ALA 352 -72.847 -10.983 22.503 1.00411.19 O ATOM 2540 N GLU 353 -70.796 -11.992 23.144 1.00448.83 N ATOM 2541 CA GLU 353 -69.709 -10.872 23.883 1.00448.83 C ATOM 2542 CB GLU 353 -70.282 -10.377 25.228 1.00448.83 C ATOM 2543 CG GLU 353 -71.215 -9.171 25.132 1.00448.83 C ATOM 2544 CD GLU 353 -70.379 -7.938 25.461 1.00448.83 C ATOM 2545 OE1 GLU 353 -69.181 -8.116 25.810 1.00448.83 O ATOM 2546 OE2 GLU 353 -70.925 -6.805 25.375 1.00448.83 O ATOM 2547 C GLU 353 -67.909 -10.869 24.276 1.00448.83 C ATOM 2548 O GLU 353 -67.352 -11.915 23.948 1.00448.83 O ATOM 2549 N GLU 354 -66.929 -9.807 24.939 1.00478.77 N ATOM 2550 CA GLU 354 -65.278 -9.637 25.368 1.00478.77 C ATOM 2551 CB GLU 354 -64.388 -9.921 24.137 1.00478.77 C ATOM 2552 CG GLU 354 -62.875 -9.851 24.394 1.00478.77 C ATOM 2553 CD GLU 354 -62.360 -8.480 23.958 1.00478.77 C ATOM 2554 OE1 GLU 354 -63.195 -7.637 23.535 1.00478.77 O ATOM 2555 OE2 GLU 354 -61.123 -8.255 24.054 1.00478.77 O ATOM 2556 C GLU 354 -64.320 -8.356 26.261 1.00478.77 C ATOM 2557 O GLU 354 -65.004 -7.381 26.569 1.00478.77 O ATOM 2558 N LEU 355 -62.811 -8.250 26.726 1.00379.94 N ATOM 2559 CA LEU 355 -61.771 -7.174 27.539 1.00379.94 C ATOM 2560 CB LEU 355 -62.255 -6.919 28.981 1.00379.94 C ATOM 2561 CG LEU 355 -63.555 -6.107 29.086 1.00379.94 C ATOM 2562 CD1 LEU 355 -63.952 -5.886 30.556 1.00379.94 C ATOM 2563 CD2 LEU 355 -63.455 -4.793 28.295 1.00379.94 C ATOM 2564 C LEU 355 -59.969 -7.113 27.768 1.00379.94 C ATOM 2565 O LEU 355 -59.384 -8.059 27.242 1.00379.94 O ATOM 2566 N GLY 356 -59.019 -6.092 28.497 1.00260.48 N ATOM 2567 CA GLY 356 -57.371 -5.913 28.843 1.00260.48 C ATOM 2568 C GLY 356 -56.394 -4.610 29.645 1.00260.48 C ATOM 2569 O GLY 356 -57.060 -3.616 29.926 1.00260.48 O ATOM 2570 N ASN 357 -54.882 -4.507 30.047 1.00388.04 N ATOM 2571 CA ASN 357 -53.849 -3.381 30.767 1.00388.04 C ATOM 2572 CB ASN 357 -54.339 -2.974 32.172 1.00388.04 C ATOM 2573 CG ASN 357 -54.045 -4.105 33.147 1.00388.04 C ATOM 2574 OD1 ASN 357 -53.340 -3.910 34.137 1.00388.04 O ATOM 2575 ND2 ASN 357 -54.589 -5.319 32.866 1.00388.04 N ATOM 2576 C ASN 357 -52.067 -3.368 31.001 1.00388.04 C ATOM 2577 O ASN 357 -51.518 -4.404 30.631 1.00388.04 O ATOM 2578 N ILE 358 -51.095 -2.289 31.575 1.00226.00 N ATOM 2579 CA ILE 358 -49.442 -2.090 31.803 1.00226.00 C ATOM 2580 CB ILE 358 -48.750 -1.890 30.460 1.00226.00 C ATOM 2581 CG2 ILE 358 -47.229 -1.993 30.646 1.00226.00 C ATOM 2582 CG1 ILE 358 -49.205 -2.915 29.410 1.00226.00 C ATOM 2583 CD1 ILE 358 -50.486 -2.520 28.678 1.00226.00 C ATOM 2584 C ILE 358 -48.538 -0.970 32.876 1.00226.00 C ATOM 2585 O ILE 358 -49.263 -0.193 33.495 1.00226.00 O ATOM 2586 N ILE 359 -47.017 -0.814 33.173 1.00196.61 N ATOM 2587 CA ILE 359 -46.004 0.133 34.100 1.00196.61 C ATOM 2588 CB ILE 359 -46.183 -0.160 35.567 1.00196.61 C ATOM 2589 CG2 ILE 359 -45.560 -1.536 35.854 1.00196.61 C ATOM 2590 CG1 ILE 359 -45.582 0.970 36.424 1.00196.61 C ATOM 2591 CD1 ILE 359 -45.922 0.871 37.912 1.00196.61 C ATOM 2592 C ILE 359 -44.254 0.404 33.978 1.00196.61 C ATOM 2593 O ILE 359 -43.720 -0.257 33.090 1.00196.61 O ATOM 2594 N VAL 360 -43.303 1.313 34.797 1.00183.30 N ATOM 2595 CA VAL 360 -41.689 1.709 34.788 1.00183.30 C ATOM 2596 CB VAL 360 -41.386 2.440 33.490 1.00183.30 C ATOM 2597 CG1 VAL 360 -39.910 2.853 33.391 1.00183.30 C ATOM 2598 CG2 VAL 360 -41.824 1.555 32.318 1.00183.30 C ATOM 2599 C VAL 360 -40.738 2.573 36.015 1.00183.30 C ATOM 2600 O VAL 360 -41.408 2.997 36.955 1.00183.30 O ATOM 2601 N ALA 361 -39.228 2.869 36.102 1.00370.88 N ATOM 2602 CA ALA 361 -38.208 3.670 37.123 1.00370.88 C ATOM 2603 CB ALA 361 -38.354 3.151 38.566 1.00370.88 C ATOM 2604 C ALA 361 -36.483 3.972 36.973 1.00370.88 C ATOM 2605 O ALA 361 -35.957 3.436 35.999 1.00370.88 O ATOM 2606 N TRP 362 -35.546 4.804 37.853 1.00492.49 N ATOM 2607 CA TRP 362 -33.947 5.202 37.868 1.00492.49 C ATOM 2608 CB TRP 362 -33.542 5.884 36.528 1.00492.49 C ATOM 2609 CG TRP 362 -32.281 6.744 36.532 1.00492.49 C ATOM 2610 CD2 TRP 362 -30.911 6.296 36.451 1.00492.49 C ATOM 2611 CD1 TRP 362 -32.224 8.104 36.658 1.00492.49 C ATOM 2612 NE1 TRP 362 -30.918 8.529 36.664 1.00492.49 N ATOM 2613 CE2 TRP 362 -30.098 7.430 36.540 1.00492.49 C ATOM 2614 CE3 TRP 362 -30.370 5.048 36.331 1.00492.49 C ATOM 2615 CZ2 TRP 362 -28.735 7.332 36.508 1.00492.49 C ATOM 2616 CZ3 TRP 362 -28.994 4.957 36.287 1.00492.49 C ATOM 2617 CH2 TRP 362 -28.191 6.075 36.375 1.00492.49 C ATOM 2618 C TRP 362 -33.044 6.081 39.068 1.00492.49 C ATOM 2619 O TRP 362 -33.727 6.620 39.937 1.00492.49 O ATOM 2620 N ASN 363 -31.541 6.265 39.194 1.00351.87 N ATOM 2621 CA ASN 363 -30.541 7.100 40.165 1.00351.87 C ATOM 2622 CB ASN 363 -30.735 6.762 41.657 1.00351.87 C ATOM 2623 CG ASN 363 -31.791 7.678 42.253 1.00351.87 C ATOM 2624 OD1 ASN 363 -32.225 8.644 41.628 1.00351.87 O ATOM 2625 ND2 ASN 363 -32.190 7.390 43.521 1.00351.87 N ATOM 2626 C ASN 363 -28.830 7.313 40.084 1.00351.87 C ATOM 2627 O ASN 363 -28.225 6.432 39.476 1.00351.87 O ATOM 2628 N PRO 364 -27.981 8.443 40.642 1.00311.76 N ATOM 2629 CA PRO 364 -26.412 8.856 40.695 1.00311.76 C ATOM 2630 CD PRO 364 -28.707 9.681 40.426 1.00311.76 C ATOM 2631 CB PRO 364 -26.366 10.210 39.981 1.00311.76 C ATOM 2632 CG PRO 364 -27.799 10.508 39.506 1.00311.76 C ATOM 2633 C PRO 364 -25.234 9.006 41.921 1.00311.76 C ATOM 2634 O PRO 364 -25.606 8.609 43.023 1.00311.76 O ATOM 2635 N ASN 365 -23.852 9.574 41.806 1.00364.10 N ATOM 2636 CA ASN 365 -22.682 9.880 42.861 1.00364.10 C ATOM 2637 CB ASN 365 -22.304 8.619 43.670 1.00364.10 C ATOM 2638 CG ASN 365 -21.454 9.024 44.872 1.00364.10 C ATOM 2639 OD1 ASN 365 -20.517 8.324 45.254 1.00364.10 O ATOM 2640 ND2 ASN 365 -21.785 10.191 45.487 1.00364.10 N ATOM 2641 C ASN 365 -21.195 10.619 42.502 1.00364.10 C ATOM 2642 O ASN 365 -20.961 10.790 41.307 1.00364.10 O ATOM 2643 N LEU 366 -20.161 11.094 43.466 1.00455.23 N ATOM 2644 CA LEU 366 -18.716 11.741 43.278 1.00455.23 C ATOM 2645 CB LEU 366 -18.775 12.984 42.360 1.00455.23 C ATOM 2646 CG LEU 366 -17.418 13.683 42.126 1.00455.23 C ATOM 2647 CD1 LEU 366 -16.437 12.772 41.368 1.00455.23 C ATOM 2648 CD2 LEU 366 -17.594 15.058 41.462 1.00455.23 C ATOM 2649 C LEU 366 -17.689 12.201 44.536 1.00455.23 C ATOM 2650 O LEU 366 -18.191 12.242 45.658 1.00455.23 O ATOM 2651 N TRP 367 -16.253 12.545 44.422 1.00458.38 N ATOM 2652 CA TRP 367 -15.176 13.094 45.447 1.00458.38 C ATOM 2653 CB TRP 367 -15.131 12.269 46.767 1.00458.38 C ATOM 2654 CG TRP 367 -13.989 12.551 47.737 1.00458.38 C ATOM 2655 CD2 TRP 367 -13.833 13.732 48.550 1.00458.38 C ATOM 2656 CD1 TRP 367 -12.883 11.783 47.975 1.00458.38 C ATOM 2657 NE1 TRP 367 -12.062 12.399 48.890 1.00458.38 N ATOM 2658 CE2 TRP 367 -12.630 13.601 49.250 1.00458.38 C ATOM 2659 CE3 TRP 367 -14.620 14.839 48.701 1.00458.38 C ATOM 2660 CZ2 TRP 367 -12.200 14.572 50.112 1.00458.38 C ATOM 2661 CZ3 TRP 367 -14.182 15.814 49.573 1.00458.38 C ATOM 2662 CH2 TRP 367 -12.996 15.685 50.266 1.00458.38 C ATOM 2663 C TRP 367 -13.594 13.423 45.035 1.00458.38 C ATOM 2664 O TRP 367 -13.229 13.053 43.921 1.00458.38 O ATOM 2665 N LYS 368 -12.613 14.123 45.875 1.00412.45 N ATOM 2666 CA LYS 368 -11.106 14.484 45.663 1.00412.45 C ATOM 2667 CB LYS 368 -10.902 15.516 44.527 1.00412.45 C ATOM 2668 CG LYS 368 -9.434 15.730 44.130 1.00412.45 C ATOM 2669 CD LYS 368 -9.209 16.745 43.006 1.00412.45 C ATOM 2670 CE LYS 368 -8.702 18.106 43.497 1.00412.45 C ATOM 2671 NZ LYS 368 -7.247 18.044 43.771 1.00412.45 N ATOM 2672 C LYS 368 -10.165 15.069 46.887 1.00412.45 C ATOM 2673 O LYS 368 -10.733 15.365 47.936 1.00412.45 O ATOM 2674 N LYS 369 -8.723 15.249 46.810 1.00377.45 N ATOM 2675 CA LYS 369 -7.691 15.830 47.819 1.00377.45 C ATOM 2676 CB LYS 369 -7.623 15.075 49.160 1.00377.45 C ATOM 2677 CG LYS 369 -8.591 15.605 50.220 1.00377.45 C ATOM 2678 CD LYS 369 -8.291 17.047 50.652 1.00377.45 C ATOM 2679 CE LYS 369 -7.137 17.181 51.652 1.00377.45 C ATOM 2680 NZ LYS 369 -5.841 17.273 50.942 1.00377.45 N ATOM 2681 C LYS 369 -6.133 16.076 47.413 1.00377.45 C ATOM 2682 O LYS 369 -5.790 15.792 46.268 1.00377.45 O ATOM 2683 N GLY 370 -5.148 16.622 48.322 1.00195.43 N ATOM 2684 CA GLY 370 -3.645 16.891 48.102 1.00195.43 C ATOM 2685 C GLY 370 -2.722 17.519 49.285 1.00195.43 C ATOM 2686 O GLY 370 -3.287 17.900 50.308 1.00195.43 O ATOM 2687 N THR 371 -1.291 17.652 49.194 1.00345.21 N ATOM 2688 CA THR 371 -0.297 18.197 50.232 1.00345.21 C ATOM 2689 CB THR 371 -0.048 17.247 51.367 1.00345.21 C ATOM 2690 OG1 THR 371 0.593 16.073 50.894 1.00345.21 O ATOM 2691 CG2 THR 371 -1.392 16.894 52.025 1.00345.21 C ATOM 2692 C THR 371 1.181 18.657 49.782 1.00345.21 C ATOM 2693 O THR 371 1.456 18.641 48.582 1.00345.21 O ATOM 2694 N ASN 372 2.169 19.095 50.725 1.00316.01 N ATOM 2695 CA ASN 372 3.598 19.577 50.477 1.00316.01 C ATOM 2696 CB ASN 372 3.625 20.943 49.750 1.00316.01 C ATOM 2697 CG ASN 372 5.022 21.240 49.210 1.00316.01 C ATOM 2698 OD1 ASN 372 5.419 22.399 49.085 1.00316.01 O ATOM 2699 ND2 ASN 372 5.793 20.170 48.881 1.00316.01 N ATOM 2700 C ASN 372 4.576 19.729 51.743 1.00316.01 C ATOM 2701 O ASN 372 4.120 19.482 52.858 1.00316.01 O ATOM 2702 N GLY 373 5.943 20.120 51.621 1.00189.61 N ATOM 2703 CA GLY 373 6.960 20.341 52.728 1.00189.61 C ATOM 2704 C GLY 373 8.439 20.792 52.331 1.00189.61 C ATOM 2705 O GLY 373 8.776 20.725 51.149 1.00189.61 O ATOM 2706 N TYR 374 9.364 21.262 53.299 1.00357.05 N ATOM 2707 CA TYR 374 10.783 21.752 53.088 1.00357.05 C ATOM 2708 CB TYR 374 10.859 23.265 52.766 1.00357.05 C ATOM 2709 CG TYR 374 12.276 23.759 52.866 1.00357.05 C ATOM 2710 CD1 TYR 374 13.156 23.658 51.809 1.00357.05 C ATOM 2711 CD2 TYR 374 12.728 24.349 54.028 1.00357.05 C ATOM 2712 CE1 TYR 374 14.450 24.121 51.915 1.00357.05 C ATOM 2713 CE2 TYR 374 14.019 24.814 54.143 1.00357.05 C ATOM 2714 CZ TYR 374 14.886 24.699 53.084 1.00357.05 C ATOM 2715 OH TYR 374 16.212 25.174 53.195 1.00357.05 O ATOM 2716 C TYR 374 11.841 21.546 54.243 1.00357.05 C ATOM 2717 O TYR 374 11.474 21.601 55.416 1.00357.05 O ATOM 2718 N PRO 375 13.154 21.276 53.933 1.00191.98 N ATOM 2719 CA PRO 375 14.342 21.068 54.834 1.00191.98 C ATOM 2720 CD PRO 375 13.425 20.750 52.605 1.00191.98 C ATOM 2721 CB PRO 375 15.403 20.396 53.954 1.00191.98 C ATOM 2722 CG PRO 375 14.954 20.653 52.508 1.00191.98 C ATOM 2723 C PRO 375 15.082 21.938 55.904 1.00191.98 C ATOM 2724 O PRO 375 14.532 22.039 56.999 1.00191.98 O ATOM 2725 N ILE 376 16.317 22.544 55.628 1.00241.76 N ATOM 2726 CA ILE 376 17.184 23.357 56.538 1.00241.76 C ATOM 2727 CB ILE 376 16.593 23.578 57.914 1.00241.76 C ATOM 2728 CG2 ILE 376 16.701 22.241 58.665 1.00241.76 C ATOM 2729 CG1 ILE 376 17.248 24.745 58.688 1.00241.76 C ATOM 2730 CD1 ILE 376 18.637 24.462 59.259 1.00241.76 C ATOM 2731 C ILE 376 18.628 22.803 56.749 1.00241.76 C ATOM 2732 O ILE 376 18.792 21.588 56.859 1.00241.76 O ATOM 2733 N PHE 377 19.721 23.662 56.792 1.00324.93 N ATOM 2734 CA PHE 377 21.123 23.253 57.050 1.00324.93 C ATOM 2735 CB PHE 377 21.867 22.827 55.756 1.00324.93 C ATOM 2736 CG PHE 377 23.294 22.482 56.058 1.00324.93 C ATOM 2737 CD1 PHE 377 23.650 21.236 56.524 1.00324.93 C ATOM 2738 CD2 PHE 377 24.287 23.423 55.881 1.00324.93 C ATOM 2739 CE1 PHE 377 24.966 20.937 56.801 1.00324.93 C ATOM 2740 CE2 PHE 377 25.603 23.130 56.156 1.00324.93 C ATOM 2741 CZ PHE 377 25.946 21.883 56.617 1.00324.93 C ATOM 2742 C PHE 377 21.985 24.357 57.714 1.00324.93 C ATOM 2743 O PHE 377 21.639 25.534 57.632 1.00324.93 O ATOM 2744 N GLN 378 23.128 23.998 58.409 1.00391.87 N ATOM 2745 CA GLN 378 24.103 24.915 59.017 1.00391.87 C ATOM 2746 CB GLN 378 23.675 25.546 60.356 1.00391.87 C ATOM 2747 CG GLN 378 22.847 26.822 60.206 1.00391.87 C ATOM 2748 CD GLN 378 23.814 27.972 59.927 1.00391.87 C ATOM 2749 OE1 GLN 378 22.608 27.775 59.786 1.00391.87 O ATOM 2750 NE2 GLN 378 24.899 27.300 60.397 1.00391.87 N ATOM 2751 C GLN 378 25.468 24.271 59.282 1.00391.87 C ATOM 2752 O GLN 378 25.646 23.068 59.098 1.00391.87 O ATOM 2753 N TRP 379 26.475 25.099 59.712 1.00359.90 N ATOM 2754 CA TRP 379 27.853 24.735 60.042 1.00359.90 C ATOM 2755 CB TRP 379 28.875 25.069 58.922 1.00359.90 C ATOM 2756 CG TRP 379 30.347 25.132 59.326 1.00359.90 C ATOM 2757 CD2 TRP 379 31.283 24.038 59.386 1.00359.90 C ATOM 2758 CD1 TRP 379 31.044 26.245 59.703 1.00359.90 C ATOM 2759 NE1 TRP 379 32.348 25.918 59.990 1.00359.90 N ATOM 2760 CE2 TRP 379 32.511 24.564 59.801 1.00359.90 C ATOM 2761 CE3 TRP 379 31.139 22.706 59.123 1.00359.90 C ATOM 2762 CZ2 TRP 379 33.610 23.766 59.957 1.00359.90 C ATOM 2763 CZ3 TRP 379 32.252 21.906 59.280 1.00359.90 C ATOM 2764 CH2 TRP 379 33.464 22.424 59.689 1.00359.90 C ATOM 2765 C TRP 379 28.326 25.481 61.272 1.00359.90 C ATOM 2766 O TRP 379 27.770 26.519 61.629 1.00359.90 O ATOM 2767 N SER 380 29.373 24.946 61.960 1.00199.64 N ATOM 2768 CA SER 380 29.954 25.585 63.118 1.00199.64 C ATOM 2769 CB SER 380 29.304 25.167 64.451 1.00199.64 C ATOM 2770 OG SER 380 29.933 25.829 65.539 1.00199.64 O ATOM 2771 C SER 380 31.407 25.185 63.200 1.00199.64 C ATOM 2772 O SER 380 31.863 24.320 62.454 1.00199.64 O ATOM 2773 N GLU 381 32.177 25.828 64.112 1.00 83.43 N ATOM 2774 CA GLU 381 33.572 25.527 64.307 1.00 83.43 C ATOM 2775 CB GLU 381 34.173 26.130 65.597 1.00 83.43 C ATOM 2776 CG GLU 381 34.591 27.600 65.507 1.00 83.43 C ATOM 2777 CD GLU 381 36.109 27.652 65.344 1.00 83.43 C ATOM 2778 OE1 GLU 381 36.744 26.563 65.371 1.00 83.43 O ATOM 2779 OE2 GLU 381 36.654 28.779 65.203 1.00 83.43 O ATOM 2780 C GLU 381 33.741 24.017 64.427 1.00 83.43 C ATOM 2781 O GLU 381 34.456 23.433 63.570 1.00 83.43 O ATOM 2782 OXT GLU 381 33.169 23.431 65.385 1.00 83.43 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 106.85 18.3 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 127.45 0.0 22 100.0 22 ARMSMC SURFACE . . . . . . . . 106.68 18.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 107.67 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.42 30.8 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 97.29 28.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 94.15 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 99.07 30.4 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 60.57 33.3 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.94 36.4 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 81.47 31.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 82.04 28.6 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 87.86 35.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 46.61 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.04 33.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 59.63 40.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 7.33 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 75.04 33.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.54 0.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 98.54 0.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 98.54 0.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 32.59 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 32.59 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 1.0512 CRMSCA SECONDARY STRUCTURE . . 35.02 11 100.0 11 CRMSCA SURFACE . . . . . . . . 33.22 26 100.0 26 CRMSCA BURIED . . . . . . . . 29.06 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 32.64 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 34.78 54 100.0 54 CRMSMC SURFACE . . . . . . . . 33.23 129 100.0 129 CRMSMC BURIED . . . . . . . . 29.10 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 32.62 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 33.20 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 31.26 41 100.0 41 CRMSSC SURFACE . . . . . . . . 32.89 120 100.0 120 CRMSSC BURIED . . . . . . . . 29.26 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 32.61 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 33.18 85 100.0 85 CRMSALL SURFACE . . . . . . . . 33.05 224 100.0 224 CRMSALL BURIED . . . . . . . . 29.09 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 298.169 0.814 0.831 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 316.067 0.820 0.836 11 100.0 11 ERRCA SURFACE . . . . . . . . 321.323 0.823 0.839 26 100.0 26 ERRCA BURIED . . . . . . . . 177.769 0.765 0.790 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 300.332 0.814 0.831 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 317.967 0.822 0.838 54 100.0 54 ERRMC SURFACE . . . . . . . . 322.567 0.824 0.839 129 100.0 129 ERRMC BURIED . . . . . . . . 175.624 0.761 0.787 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 324.845 0.821 0.836 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 324.363 0.816 0.832 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 353.177 0.848 0.860 41 100.0 41 ERRSC SURFACE . . . . . . . . 338.356 0.828 0.842 120 100.0 120 ERRSC BURIED . . . . . . . . 162.712 0.742 0.772 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 311.805 0.817 0.834 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 334.025 0.834 0.848 85 100.0 85 ERRALL SURFACE . . . . . . . . 330.434 0.826 0.840 224 100.0 224 ERRALL BURIED . . . . . . . . 172.711 0.757 0.784 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 4 31 31 DISTCA CA (P) 0.00 0.00 0.00 3.23 12.90 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.44 7.48 DISTCA ALL (N) 0 0 0 4 32 254 254 DISTALL ALL (P) 0.00 0.00 0.00 1.57 12.60 254 DISTALL ALL (RMS) 0.00 0.00 0.00 4.24 7.74 DISTALL END of the results output