####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 253), selected 31 , name T0537TS016_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS016_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 358 - 376 4.68 9.49 LCS_AVERAGE: 55.05 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 364 - 371 1.95 13.02 LCS_AVERAGE: 19.56 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 361 - 365 0.59 18.26 LONGEST_CONTINUOUS_SEGMENT: 5 367 - 371 0.76 11.55 LCS_AVERAGE: 12.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 4 13 3 3 4 4 4 9 13 13 15 17 18 21 22 22 22 23 25 26 26 26 LCS_GDT A 352 A 352 3 4 15 3 3 3 3 4 4 8 11 13 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT E 353 E 353 3 4 15 3 3 3 3 4 5 7 8 11 14 18 21 22 22 22 24 25 26 26 26 LCS_GDT E 354 E 354 3 4 15 3 3 3 3 4 5 8 12 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT L 355 L 355 3 5 15 3 3 3 4 5 5 7 9 12 16 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 356 G 356 3 5 15 3 3 3 4 5 5 6 9 10 12 12 13 15 16 21 24 25 26 26 26 LCS_GDT N 357 N 357 3 5 15 3 3 3 4 5 5 6 7 8 11 12 13 15 16 21 24 25 26 26 26 LCS_GDT I 358 I 358 3 5 19 3 3 3 4 5 6 7 9 11 15 18 21 22 22 22 24 25 26 26 26 LCS_GDT I 359 I 359 3 5 19 3 3 3 4 5 6 7 9 11 12 12 15 16 20 22 24 25 26 26 26 LCS_GDT V 360 V 360 3 4 19 3 3 3 4 4 6 7 9 11 15 18 21 22 22 22 24 25 26 26 26 LCS_GDT A 361 A 361 5 6 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT W 362 W 362 5 6 19 3 5 5 5 7 8 11 13 15 15 17 21 22 22 22 24 25 26 26 26 LCS_GDT N 363 N 363 5 6 19 3 5 5 6 7 10 12 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT P 364 P 364 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT N 365 N 365 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT L 366 L 366 4 8 19 3 4 5 6 6 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT W 367 W 367 5 8 19 3 5 5 6 6 9 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT K 368 K 368 5 8 19 3 5 5 6 7 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT K 369 K 369 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 370 G 370 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT T 371 T 371 5 8 19 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT N 372 N 372 4 7 19 3 4 4 6 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT G 373 G 373 4 6 19 3 3 4 5 5 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT Y 374 Y 374 4 6 19 3 3 4 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT P 375 P 375 4 6 19 3 4 4 4 5 8 11 13 15 17 18 21 22 22 22 24 25 26 26 26 LCS_GDT I 376 I 376 4 6 19 3 4 4 4 8 8 9 10 11 12 13 14 16 19 22 24 25 26 26 26 LCS_GDT F 377 F 377 4 6 13 3 4 5 5 8 8 9 10 11 11 11 12 13 15 15 16 17 17 19 19 LCS_GDT Q 378 Q 378 4 6 13 3 4 5 5 8 8 9 10 11 11 11 12 12 15 15 16 17 17 19 19 LCS_GDT W 379 W 379 4 6 13 3 3 5 5 8 8 9 10 11 11 11 12 14 15 16 17 17 17 19 19 LCS_GDT S 380 S 380 4 6 13 3 3 5 5 8 8 9 10 11 11 11 13 14 15 16 17 17 17 20 20 LCS_GDT E 381 E 381 3 6 13 3 3 5 5 8 8 9 10 11 11 11 12 12 15 15 17 17 17 18 19 LCS_AVERAGE LCS_A: 29.14 ( 12.80 19.56 55.05 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 7 8 10 13 13 15 17 18 21 22 22 22 24 25 26 26 26 GDT PERCENT_AT 9.68 16.13 16.13 22.58 25.81 32.26 41.94 41.94 48.39 54.84 58.06 67.74 70.97 70.97 70.97 77.42 80.65 83.87 83.87 83.87 GDT RMS_LOCAL 0.05 0.59 0.59 1.36 1.55 2.07 2.76 2.76 3.20 3.54 3.77 4.31 4.45 4.45 4.45 5.57 5.44 5.68 5.68 5.68 GDT RMS_ALL_AT 19.84 18.26 18.26 10.13 10.08 10.09 10.24 10.24 10.16 9.62 9.45 9.12 9.09 9.09 9.09 8.48 8.71 8.61 8.61 8.61 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 2.526 0 0.041 0.070 6.930 48.690 39.921 LGA A 352 A 352 6.367 0 0.402 0.406 8.869 18.333 15.619 LGA E 353 E 353 7.323 0 0.613 0.782 12.093 15.357 7.778 LGA E 354 E 354 5.641 0 0.602 0.658 7.805 14.762 25.450 LGA L 355 L 355 7.954 0 0.651 0.709 9.632 5.595 8.095 LGA G 356 G 356 13.188 0 0.564 0.564 13.854 0.000 0.000 LGA N 357 N 357 12.836 0 0.301 0.796 15.775 0.000 0.000 LGA I 358 I 358 8.989 0 0.597 1.579 10.189 0.833 7.917 LGA I 359 I 359 12.405 0 0.610 1.565 17.688 0.119 0.060 LGA V 360 V 360 8.464 0 0.630 1.465 10.144 6.429 5.102 LGA A 361 A 361 3.408 0 0.653 0.586 5.374 33.452 39.714 LGA W 362 W 362 9.047 0 0.089 1.242 19.345 4.762 1.361 LGA N 363 N 363 5.255 0 0.032 0.872 6.815 32.619 29.643 LGA P 364 P 364 1.463 0 0.777 0.852 2.782 69.048 66.122 LGA N 365 N 365 2.799 0 0.740 0.623 7.631 61.429 40.060 LGA L 366 L 366 3.184 0 0.543 1.333 9.822 59.643 33.810 LGA W 367 W 367 3.270 0 0.064 0.088 9.599 61.190 27.925 LGA K 368 K 368 2.781 0 0.028 0.841 3.026 59.167 58.889 LGA K 369 K 369 2.305 0 0.106 0.876 4.672 64.762 55.661 LGA G 370 G 370 2.353 0 0.033 0.033 2.353 66.786 66.786 LGA T 371 T 371 2.210 0 0.639 0.583 3.663 61.429 56.599 LGA N 372 N 372 3.032 0 0.643 1.220 9.596 65.119 38.393 LGA G 373 G 373 3.100 0 0.100 0.100 4.111 48.571 48.571 LGA Y 374 Y 374 2.857 0 0.602 0.645 5.694 43.214 44.444 LGA P 375 P 375 6.070 0 0.066 0.311 9.884 12.976 16.054 LGA I 376 I 376 12.736 0 0.160 1.054 15.457 0.000 0.000 LGA F 377 F 377 18.841 0 0.053 0.490 21.747 0.000 0.000 LGA Q 378 Q 378 21.378 0 0.288 0.373 25.586 0.000 0.000 LGA W 379 W 379 22.091 0 0.726 1.273 26.456 0.000 0.000 LGA S 380 S 380 17.911 0 0.263 0.679 19.047 0.000 0.000 LGA E 381 E 381 19.708 1 0.531 1.208 21.186 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 253 99.61 31 SUMMARY(RMSD_GDC): 8.141 8.095 9.933 27.558 23.677 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 13 2.76 39.516 35.762 0.454 LGA_LOCAL RMSD: 2.763 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.241 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 8.141 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.838484 * X + -0.091134 * Y + 0.537251 * Z + -74.143379 Y_new = 0.083714 * X + -0.952670 * Y + -0.292254 * Z + 80.006027 Z_new = 0.538457 * X + 0.290026 * Y + -0.791169 * Z + 3.898463 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.099510 -0.568605 2.790225 [DEG: 5.7015 -32.5787 159.8681 ] ZXZ: 1.072586 2.483515 1.076729 [DEG: 61.4547 142.2949 61.6920 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS016_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS016_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 13 2.76 35.762 8.14 REMARK ---------------------------------------------------------- MOLECULE T0537TS016_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1rmg_A ATOM 2529 N SER 351 5.784 15.674 49.116 1.00 99.90 N ATOM 2530 CA SER 351 4.414 15.296 49.271 1.00 99.90 C ATOM 2531 C SER 351 4.251 13.910 48.736 1.00 99.90 C ATOM 2532 O SER 351 4.942 13.503 47.804 1.00 99.90 O ATOM 2533 CB SER 351 3.457 16.222 48.501 1.00 99.90 C ATOM 2534 OG SER 351 3.659 16.088 47.104 1.00 99.90 O ATOM 2535 N ALA 352 3.321 13.146 49.341 1.00 99.90 N ATOM 2536 CA ALA 352 3.004 11.815 48.916 1.00 99.90 C ATOM 2537 C ALA 352 4.242 10.999 48.813 1.00 99.90 C ATOM 2538 O ALA 352 4.407 10.225 47.871 1.00 99.90 O ATOM 2539 CB ALA 352 2.284 11.762 47.558 1.00 99.90 C ATOM 2540 N GLU 353 5.150 11.127 49.792 1.00 99.90 N ATOM 2541 CA GLU 353 6.320 10.319 49.683 1.00 99.90 C ATOM 2542 C GLU 353 6.243 9.281 50.752 1.00 99.90 C ATOM 2543 O GLU 353 5.988 9.593 51.914 1.00 99.90 O ATOM 2544 CB GLU 353 7.623 11.114 49.881 1.00 99.90 C ATOM 2545 CG GLU 353 8.885 10.286 49.658 1.00 99.90 C ATOM 2546 CD GLU 353 10.091 11.186 49.878 1.00 99.90 C ATOM 2547 OE1 GLU 353 10.226 11.736 51.005 1.00 99.90 O ATOM 2548 OE2 GLU 353 10.893 11.338 48.921 1.00 99.90 O ATOM 2549 N GLU 354 6.417 7.999 50.375 1.00 99.90 N ATOM 2550 CA GLU 354 6.414 6.991 51.389 1.00 99.90 C ATOM 2551 C GLU 354 7.634 6.160 51.190 1.00 99.90 C ATOM 2552 O GLU 354 7.702 5.335 50.280 1.00 99.90 O ATOM 2553 CB GLU 354 5.182 6.068 51.325 1.00 99.90 C ATOM 2554 CG GLU 354 3.879 6.804 51.656 1.00 99.90 C ATOM 2555 CD GLU 354 2.704 5.841 51.545 1.00 99.90 C ATOM 2556 OE1 GLU 354 2.946 4.631 51.291 1.00 99.90 O ATOM 2557 OE2 GLU 354 1.545 6.308 51.713 1.00 99.90 O ATOM 2558 N LEU 355 8.641 6.370 52.058 1.00 99.90 N ATOM 2559 CA LEU 355 9.851 5.612 51.999 1.00 99.90 C ATOM 2560 C LEU 355 9.773 4.750 53.202 1.00 99.90 C ATOM 2561 O LEU 355 9.616 5.256 54.311 1.00 99.90 O ATOM 2562 CB LEU 355 11.107 6.482 52.143 1.00 99.90 C ATOM 2563 CG LEU 355 11.215 7.547 51.034 1.00 99.90 C ATOM 2564 CD1 LEU 355 12.437 8.455 51.230 1.00 99.90 C ATOM 2565 CD2 LEU 355 11.347 6.905 49.647 1.00 99.90 C ATOM 2566 N GLY 356 9.880 3.424 53.031 1.00 99.90 N ATOM 2567 CA GLY 356 9.681 2.622 54.194 1.00 99.90 C ATOM 2568 C GLY 356 10.720 1.556 54.267 1.00 99.90 C ATOM 2569 O GLY 356 11.583 1.427 53.398 1.00 99.90 O ATOM 2570 N ASN 357 10.619 0.750 55.341 1.00 99.90 N ATOM 2571 CA ASN 357 11.506 -0.332 55.636 1.00 99.90 C ATOM 2572 C ASN 357 12.833 0.237 55.994 1.00 99.90 C ATOM 2573 O ASN 357 13.850 -0.457 56.025 1.00 99.90 O ATOM 2574 CB ASN 357 11.655 -1.300 54.461 1.00 99.90 C ATOM 2575 CG ASN 357 12.017 -2.652 55.043 1.00 99.90 C ATOM 2576 OD1 ASN 357 11.608 -3.002 56.149 1.00 99.90 O ATOM 2577 ND2 ASN 357 12.810 -3.441 54.277 1.00 99.90 N ATOM 2578 N ILE 358 12.816 1.531 56.340 1.00 99.90 N ATOM 2579 CA ILE 358 13.975 2.251 56.756 1.00 99.90 C ATOM 2580 C ILE 358 13.706 2.736 58.126 1.00 99.90 C ATOM 2581 O ILE 358 12.563 2.864 58.558 1.00 99.90 O ATOM 2582 CB ILE 358 14.250 3.533 56.021 1.00 99.90 C ATOM 2583 CG1 ILE 358 13.087 4.520 56.188 1.00 99.90 C ATOM 2584 CG2 ILE 358 14.436 3.272 54.546 1.00 99.90 C ATOM 2585 CD1 ILE 358 13.406 5.907 55.636 1.00 99.90 C ATOM 2586 N ILE 359 14.800 3.012 58.840 1.00 99.90 N ATOM 2587 CA ILE 359 14.737 3.565 60.146 1.00 99.90 C ATOM 2588 C ILE 359 15.136 4.994 59.970 1.00 99.90 C ATOM 2589 O ILE 359 15.916 5.320 59.075 1.00 99.90 O ATOM 2590 CB ILE 359 15.690 2.885 61.077 1.00 99.90 C ATOM 2591 CG1 ILE 359 17.132 3.041 60.566 1.00 99.90 C ATOM 2592 CG2 ILE 359 15.299 1.398 61.124 1.00 99.90 C ATOM 2593 CD1 ILE 359 18.186 2.561 61.561 1.00 99.90 C ATOM 2594 N VAL 360 14.560 5.900 60.782 1.00 99.90 N ATOM 2595 CA VAL 360 14.868 7.287 60.605 1.00 99.90 C ATOM 2596 C VAL 360 16.338 7.445 60.753 1.00 99.90 C ATOM 2597 O VAL 360 16.979 6.743 61.534 1.00 99.90 O ATOM 2598 CB VAL 360 14.185 8.201 61.578 1.00 99.90 C ATOM 2599 CG1 VAL 360 12.668 8.063 61.391 1.00 99.90 C ATOM 2600 CG2 VAL 360 14.585 7.796 63.006 1.00 99.90 C ATOM 2601 N ALA 361 16.909 8.368 59.958 1.00 99.90 N ATOM 2602 CA ALA 361 18.325 8.526 59.961 1.00 99.90 C ATOM 2603 C ALA 361 18.738 8.871 61.345 1.00 99.90 C ATOM 2604 O ALA 361 18.288 9.856 61.928 1.00 99.90 O ATOM 2605 CB ALA 361 18.814 9.640 59.025 1.00 99.90 C ATOM 2606 N TRP 362 19.615 8.034 61.914 1.00 99.90 N ATOM 2607 CA TRP 362 20.060 8.306 63.235 1.00 99.90 C ATOM 2608 C TRP 362 20.883 9.542 63.169 1.00 99.90 C ATOM 2609 O TRP 362 20.722 10.457 63.974 1.00 99.90 O ATOM 2610 CB TRP 362 20.910 7.169 63.806 1.00 99.90 C ATOM 2611 CG TRP 362 21.376 7.453 65.205 1.00 99.90 C ATOM 2612 CD1 TRP 362 20.730 7.239 66.386 1.00 99.90 C ATOM 2613 CD2 TRP 362 22.650 8.019 65.533 1.00 99.90 C ATOM 2614 NE1 TRP 362 21.524 7.641 67.433 1.00 99.90 N ATOM 2615 CE2 TRP 362 22.710 8.121 66.922 1.00 99.90 C ATOM 2616 CE3 TRP 362 23.686 8.418 64.740 1.00 99.90 C ATOM 2617 CZ2 TRP 362 23.814 8.629 67.542 1.00 99.90 C ATOM 2618 CZ3 TRP 362 24.798 8.931 65.369 1.00 99.90 C ATOM 2619 CH2 TRP 362 24.859 9.034 66.743 1.00 99.90 H ATOM 2620 N ASN 363 21.787 9.607 62.173 1.00 99.90 N ATOM 2621 CA ASN 363 22.627 10.756 62.116 1.00 99.90 C ATOM 2622 C ASN 363 22.497 11.372 60.767 1.00 99.90 C ATOM 2623 O ASN 363 23.125 10.947 59.798 1.00 99.90 O ATOM 2624 CB ASN 363 24.102 10.386 62.340 1.00 99.90 C ATOM 2625 CG ASN 363 24.908 11.667 62.426 1.00 99.90 C ATOM 2626 OD1 ASN 363 25.756 11.952 61.583 1.00 99.90 O ATOM 2627 ND2 ASN 363 24.634 12.470 63.488 1.00 99.90 N ATOM 2628 N PRO 364 21.677 12.373 60.686 1.00 99.90 N ATOM 2629 CA PRO 364 21.575 13.113 59.471 1.00 99.90 C ATOM 2630 C PRO 364 22.762 13.988 59.595 1.00 99.90 C ATOM 2631 O PRO 364 23.334 14.010 60.682 1.00 99.90 O ATOM 2632 CB PRO 364 20.229 13.841 59.523 1.00 99.90 C ATOM 2633 CG PRO 364 19.990 14.116 61.019 1.00 99.90 C ATOM 2634 CD PRO 364 20.551 12.862 61.707 1.00 99.90 C ATOM 2635 N ASN 365 23.191 14.679 58.528 1.00 99.90 N ATOM 2636 CA ASN 365 24.297 15.548 58.762 1.00 99.90 C ATOM 2637 C ASN 365 23.764 16.535 59.744 1.00 99.90 C ATOM 2638 O ASN 365 22.551 16.719 59.817 1.00 99.90 O ATOM 2639 CB ASN 365 24.781 16.273 57.499 1.00 99.90 C ATOM 2640 CG ASN 365 25.449 15.232 56.610 1.00 99.90 C ATOM 2641 OD1 ASN 365 25.863 14.170 57.074 1.00 99.90 O ATOM 2642 ND2 ASN 365 25.559 15.543 55.291 1.00 99.90 N ATOM 2643 N LEU 366 24.623 17.139 60.588 1.00 99.90 N ATOM 2644 CA LEU 366 24.044 18.045 61.536 1.00 99.90 C ATOM 2645 C LEU 366 23.798 19.317 60.809 1.00 99.90 C ATOM 2646 O LEU 366 24.534 20.293 60.959 1.00 99.90 O ATOM 2647 CB LEU 366 24.959 18.365 62.726 1.00 99.90 C ATOM 2648 CG LEU 366 25.300 17.148 63.602 1.00 99.90 C ATOM 2649 CD1 LEU 366 26.248 17.524 64.750 1.00 99.90 C ATOM 2650 CD2 LEU 366 24.035 16.545 64.226 1.00 99.90 C ATOM 2651 N TRP 367 22.725 19.319 60.001 1.00 99.90 N ATOM 2652 CA TRP 367 22.347 20.443 59.213 1.00 99.90 C ATOM 2653 C TRP 367 20.870 20.594 59.372 1.00 99.90 C ATOM 2654 O TRP 367 20.134 19.611 59.464 1.00 99.90 O ATOM 2655 CB TRP 367 22.670 20.252 57.723 1.00 99.90 C ATOM 2656 CG TRP 367 24.139 20.121 57.409 1.00 99.90 C ATOM 2657 CD1 TRP 367 24.906 18.995 57.356 1.00 99.90 C ATOM 2658 CD2 TRP 367 25.021 21.224 57.143 1.00 99.90 C ATOM 2659 NE1 TRP 367 26.207 19.324 57.073 1.00 99.90 N ATOM 2660 CE2 TRP 367 26.294 20.693 56.941 1.00 99.90 C ATOM 2661 CE3 TRP 367 24.793 22.569 57.081 1.00 99.90 C ATOM 2662 CZ2 TRP 367 27.362 21.500 56.673 1.00 99.90 C ATOM 2663 CZ3 TRP 367 25.874 23.380 56.803 1.00 99.90 C ATOM 2664 CH2 TRP 367 27.134 22.857 56.603 1.00 99.90 H ATOM 2665 N LYS 368 20.401 21.852 59.385 1.00 99.90 N ATOM 2666 CA LYS 368 19.022 22.127 59.647 1.00 99.90 C ATOM 2667 C LYS 368 18.176 21.636 58.527 1.00 99.90 C ATOM 2668 O LYS 368 18.615 21.520 57.391 1.00 99.90 O ATOM 2669 CB LYS 368 18.721 23.625 59.828 1.00 99.90 C ATOM 2670 CG LYS 368 19.339 24.247 61.083 1.00 99.90 C ATOM 2671 CD LYS 368 18.989 25.730 61.245 1.00 99.90 C ATOM 2672 CE LYS 368 19.591 26.379 62.493 1.00 99.90 C ATOM 2673 NZ LYS 368 19.187 27.802 62.564 1.00 99.90 N ATOM 2674 N LYS 369 16.917 21.301 58.842 1.00 99.90 N ATOM 2675 CA LYS 369 15.982 20.844 57.861 1.00 99.90 C ATOM 2676 C LYS 369 15.293 22.064 57.332 1.00 99.90 C ATOM 2677 O LYS 369 15.398 23.143 57.910 1.00 99.90 O ATOM 2678 CB LYS 369 14.924 19.928 58.487 1.00 99.90 C ATOM 2679 CG LYS 369 14.008 20.609 59.498 1.00 99.90 C ATOM 2680 CD LYS 369 13.012 19.634 60.125 1.00 99.90 C ATOM 2681 CE LYS 369 12.070 20.308 61.127 1.00 99.90 C ATOM 2682 NZ LYS 369 11.130 19.320 61.695 1.00 99.90 N ATOM 2683 N GLY 370 14.573 21.927 56.201 1.00 99.90 N ATOM 2684 CA GLY 370 13.899 23.058 55.633 1.00 99.90 C ATOM 2685 C GLY 370 12.805 23.435 56.575 1.00 99.90 C ATOM 2686 O GLY 370 12.394 22.636 57.413 1.00 99.90 O ATOM 2687 N THR 371 12.276 24.665 56.436 1.00 99.90 N ATOM 2688 CA THR 371 11.295 25.119 57.374 1.00 99.90 C ATOM 2689 C THR 371 10.071 24.280 57.209 1.00 99.90 C ATOM 2690 O THR 371 10.046 23.361 56.395 1.00 99.90 O ATOM 2691 CB THR 371 10.951 26.578 57.241 1.00 99.90 C ATOM 2692 OG1 THR 371 10.375 26.842 55.971 1.00 99.90 O ATOM 2693 CG2 THR 371 12.243 27.397 57.397 1.00 99.90 C ATOM 2694 N ASN 372 9.026 24.557 58.008 1.00 99.90 N ATOM 2695 CA ASN 372 7.865 23.716 57.989 1.00 99.90 C ATOM 2696 C ASN 372 7.212 23.784 56.650 1.00 99.90 C ATOM 2697 O ASN 372 7.303 24.781 55.935 1.00 99.90 O ATOM 2698 CB ASN 372 6.830 24.084 59.059 1.00 99.90 C ATOM 2699 CG ASN 372 7.426 23.687 60.402 1.00 99.90 C ATOM 2700 OD1 ASN 372 8.334 22.860 60.477 1.00 99.90 O ATOM 2701 ND2 ASN 372 6.902 24.296 61.499 1.00 99.90 N ATOM 2702 N GLY 373 6.564 22.670 56.265 1.00 99.90 N ATOM 2703 CA GLY 373 5.878 22.557 55.014 1.00 99.90 C ATOM 2704 C GLY 373 6.841 21.915 54.073 1.00 99.90 C ATOM 2705 O GLY 373 6.460 21.204 53.146 1.00 99.90 O ATOM 2706 N TYR 374 8.135 22.180 54.306 1.00 99.90 N ATOM 2707 CA TYR 374 9.227 21.639 53.549 1.00 99.90 C ATOM 2708 C TYR 374 9.382 20.172 53.810 1.00 99.90 C ATOM 2709 O TYR 374 9.561 19.395 52.873 1.00 99.90 O ATOM 2710 CB TYR 374 10.543 22.341 53.894 1.00 99.90 C ATOM 2711 CG TYR 374 10.377 23.718 53.359 1.00 99.90 C ATOM 2712 CD1 TYR 374 9.388 24.035 52.453 1.00 99.90 C ATOM 2713 CD2 TYR 374 11.220 24.707 53.766 1.00 99.90 C ATOM 2714 CE1 TYR 374 9.237 25.308 51.956 1.00 99.90 C ATOM 2715 CE2 TYR 374 11.067 25.972 53.271 1.00 99.90 C ATOM 2716 CZ TYR 374 10.089 26.294 52.372 1.00 99.90 C ATOM 2717 OH TYR 374 9.970 27.615 51.888 1.00 99.90 H ATOM 2718 N PRO 375 9.285 19.747 55.044 1.00 99.90 N ATOM 2719 CA PRO 375 9.540 18.368 55.331 1.00 99.90 C ATOM 2720 C PRO 375 8.527 17.446 54.775 1.00 99.90 C ATOM 2721 O PRO 375 7.424 17.876 54.441 1.00 99.90 O ATOM 2722 CB PRO 375 9.731 18.257 56.848 1.00 99.90 C ATOM 2723 CG PRO 375 8.904 19.415 57.432 1.00 99.90 C ATOM 2724 CD PRO 375 9.074 20.535 56.399 1.00 99.90 C ATOM 2725 N ILE 376 8.912 16.169 54.654 1.00 99.90 N ATOM 2726 CA ILE 376 8.050 15.179 54.103 1.00 99.90 C ATOM 2727 C ILE 376 6.782 15.206 54.889 1.00 99.90 C ATOM 2728 O ILE 376 6.798 15.391 56.105 1.00 99.90 O ATOM 2729 CB ILE 376 8.629 13.801 54.171 1.00 99.90 C ATOM 2730 CG1 ILE 376 9.876 13.719 53.280 1.00 99.90 C ATOM 2731 CG2 ILE 376 7.565 12.811 53.679 1.00 99.90 C ATOM 2732 CD1 ILE 376 10.667 12.423 53.449 1.00 99.90 C ATOM 2733 N PHE 377 5.634 15.077 54.193 1.00 99.90 N ATOM 2734 CA PHE 377 4.387 15.080 54.893 1.00 99.90 C ATOM 2735 C PHE 377 4.280 13.822 55.681 1.00 99.90 C ATOM 2736 O PHE 377 4.654 12.744 55.222 1.00 99.90 O ATOM 2737 CB PHE 377 3.130 15.173 54.006 1.00 99.90 C ATOM 2738 CG PHE 377 3.030 16.548 53.442 1.00 99.90 C ATOM 2739 CD1 PHE 377 3.401 16.821 52.150 1.00 99.90 C ATOM 2740 CD2 PHE 377 2.549 17.575 54.216 1.00 99.90 C ATOM 2741 CE1 PHE 377 3.303 18.093 51.638 1.00 99.90 C ATOM 2742 CE2 PHE 377 2.446 18.853 53.716 1.00 99.90 C ATOM 2743 CZ PHE 377 2.825 19.116 52.422 1.00 99.90 C ATOM 2744 N GLN 378 3.779 13.957 56.923 1.00 99.90 N ATOM 2745 CA GLN 378 3.577 12.834 57.783 1.00 99.90 C ATOM 2746 C GLN 378 4.879 12.127 57.903 1.00 99.90 C ATOM 2747 O GLN 378 4.922 10.921 58.140 1.00 99.90 O ATOM 2748 CB GLN 378 2.538 11.849 57.229 1.00 99.90 C ATOM 2749 CG GLN 378 1.152 12.475 57.077 1.00 99.90 C ATOM 2750 CD GLN 378 0.198 11.405 56.570 1.00 99.90 C ATOM 2751 OE1 GLN 378 0.571 10.240 56.450 1.00 99.90 O ATOM 2752 NE2 GLN 378 -1.064 11.806 56.262 1.00 99.90 N ATOM 2753 N TRP 379 5.989 12.871 57.757 1.00 99.90 N ATOM 2754 CA TRP 379 7.248 12.208 57.851 1.00 99.90 C ATOM 2755 C TRP 379 8.287 13.277 57.915 1.00 99.90 C ATOM 2756 O TRP 379 7.973 14.443 58.146 1.00 99.90 O ATOM 2757 CB TRP 379 7.498 11.254 56.666 1.00 99.90 C ATOM 2758 CG TRP 379 8.779 10.454 56.717 1.00 99.90 C ATOM 2759 CD1 TRP 379 9.934 10.624 56.015 1.00 99.90 C ATOM 2760 CD2 TRP 379 8.993 9.329 57.584 1.00 99.90 C ATOM 2761 NE1 TRP 379 10.854 9.671 56.382 1.00 99.90 N ATOM 2762 CE2 TRP 379 10.288 8.867 57.351 1.00 99.90 C ATOM 2763 CE3 TRP 379 8.179 8.729 58.501 1.00 99.90 C ATOM 2764 CZ2 TRP 379 10.790 7.795 58.033 1.00 99.90 C ATOM 2765 CZ3 TRP 379 8.686 7.649 59.186 1.00 99.90 C ATOM 2766 CH2 TRP 379 9.967 7.191 58.956 1.00 99.90 H ATOM 2767 N SER 380 9.567 12.900 57.754 1.00 99.90 N ATOM 2768 CA SER 380 10.611 13.874 57.850 1.00 99.90 C ATOM 2769 C SER 380 11.866 13.156 57.473 1.00 99.90 C ATOM 2770 O SER 380 11.864 12.289 56.603 1.00 99.90 O ATOM 2771 CB SER 380 10.768 14.419 59.282 1.00 99.90 C ATOM 2772 OG SER 380 11.699 15.490 59.317 1.00 99.90 O ATOM 2773 N GLU 381 12.997 13.528 58.090 1.00 99.90 N ATOM 2774 CA GLU 381 14.208 12.833 57.793 1.00 99.90 C ATOM 2775 C GLU 381 14.248 11.620 58.712 1.00 99.90 C ATOM 2776 O GLU 381 14.204 10.475 58.186 1.00 99.90 O ATOM 2777 CB GLU 381 15.449 13.687 58.072 1.00 99.90 C ATOM 2778 CG GLU 381 15.516 14.924 57.177 1.00 99.90 C ATOM 2779 CD GLU 381 16.711 15.750 57.619 1.00 99.90 C ATOM 2780 OE1 GLU 381 17.514 15.231 58.439 1.00 99.90 O ATOM 2781 OE2 GLU 381 16.836 16.910 57.146 1.00 99.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 253 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.27 41.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 108.71 18.2 22 100.0 22 ARMSMC SURFACE . . . . . . . . 90.98 40.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 92.70 50.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.21 42.3 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 86.22 44.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 93.58 37.5 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 85.12 47.8 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 109.07 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.36 63.6 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 40.86 68.8 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 43.17 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 50.28 65.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 51.16 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 39.22 66.7 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 40.89 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 50.19 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 39.22 66.7 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 1.36 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 1.36 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 1.36 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.14 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.14 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2626 CRMSCA SECONDARY STRUCTURE . . 5.31 11 100.0 11 CRMSCA SURFACE . . . . . . . . 8.45 26 100.0 26 CRMSCA BURIED . . . . . . . . 6.29 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.31 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 5.40 54 100.0 54 CRMSMC SURFACE . . . . . . . . 8.61 129 100.0 129 CRMSMC BURIED . . . . . . . . 6.39 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.53 129 99.2 130 CRMSSC RELIABLE SIDE CHAINS . 11.70 113 99.1 114 CRMSSC SECONDARY STRUCTURE . . 9.76 41 100.0 41 CRMSSC SURFACE . . . . . . . . 11.71 119 99.2 120 CRMSSC BURIED . . . . . . . . 9.02 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.99 253 99.6 254 CRMSALL SECONDARY STRUCTURE . . 7.74 85 100.0 85 CRMSALL SURFACE . . . . . . . . 10.30 223 99.6 224 CRMSALL BURIED . . . . . . . . 7.29 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.602 0.866 0.876 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 95.019 0.908 0.912 11 100.0 11 ERRCA SURFACE . . . . . . . . 92.355 0.862 0.872 26 100.0 26 ERRCA BURIED . . . . . . . . 93.883 0.887 0.893 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.461 0.864 0.874 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 94.909 0.906 0.910 54 100.0 54 ERRMC SURFACE . . . . . . . . 92.222 0.860 0.871 129 100.0 129 ERRMC BURIED . . . . . . . . 93.800 0.886 0.892 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 89.417 0.813 0.832 129 99.2 130 ERRSC RELIABLE SIDE CHAINS . 89.173 0.809 0.828 113 99.1 114 ERRSC SECONDARY STRUCTURE . . 91.421 0.847 0.861 41 100.0 41 ERRSC SURFACE . . . . . . . . 89.227 0.810 0.829 119 99.2 120 ERRSC BURIED . . . . . . . . 91.670 0.850 0.862 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.996 0.839 0.854 253 99.6 254 ERRALL SECONDARY STRUCTURE . . 93.301 0.879 0.888 85 100.0 85 ERRALL SURFACE . . . . . . . . 90.708 0.835 0.850 223 99.6 224 ERRALL BURIED . . . . . . . . 93.140 0.874 0.883 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 9 26 31 31 DISTCA CA (P) 0.00 0.00 6.45 29.03 83.87 31 DISTCA CA (RMS) 0.00 0.00 2.25 3.60 6.33 DISTCA ALL (N) 2 3 12 53 169 253 254 DISTALL ALL (P) 0.79 1.18 4.72 20.87 66.54 254 DISTALL ALL (RMS) 0.90 1.25 2.30 3.62 6.57 DISTALL END of the results output