####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 254), selected 31 , name T0537TS014_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS014_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 351 - 366 4.58 11.88 LCS_AVERAGE: 47.76 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 371 - 378 1.95 25.03 LCS_AVERAGE: 18.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 365 - 370 0.97 19.62 LCS_AVERAGE: 13.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 16 0 3 3 5 5 5 6 8 10 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT A 352 A 352 4 4 16 3 3 4 4 5 7 8 10 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT E 353 E 353 4 4 16 3 3 4 4 4 7 8 10 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT E 354 E 354 4 4 16 3 4 4 4 5 7 8 10 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT L 355 L 355 4 4 16 3 4 4 4 4 4 6 8 8 9 11 13 14 16 16 17 18 19 20 21 LCS_GDT G 356 G 356 4 4 16 3 4 4 4 5 5 7 8 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT N 357 N 357 4 4 16 3 4 4 5 5 7 8 10 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT I 358 I 358 3 4 16 3 3 3 5 5 7 8 10 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT I 359 I 359 3 4 16 3 3 3 5 5 7 8 10 11 12 13 14 15 16 16 17 18 19 20 21 LCS_GDT V 360 V 360 3 4 16 3 3 3 5 5 5 6 8 9 9 12 14 15 16 16 17 18 19 20 21 LCS_GDT A 361 A 361 3 5 16 3 3 3 4 5 7 8 11 12 13 13 14 15 16 16 17 18 19 20 21 LCS_GDT W 362 W 362 3 5 16 3 3 3 4 5 7 8 11 12 13 13 14 15 16 16 17 18 19 20 21 LCS_GDT N 363 N 363 3 5 16 3 3 3 4 5 7 8 11 12 13 13 14 15 16 16 17 18 19 20 21 LCS_GDT P 364 P 364 3 5 16 3 3 3 4 5 7 8 11 12 13 13 14 15 16 16 17 18 19 20 21 LCS_GDT N 365 N 365 6 6 16 3 4 5 6 6 7 8 11 12 13 13 14 15 16 16 17 18 19 20 21 LCS_GDT L 366 L 366 6 6 16 3 5 5 6 6 7 8 11 12 13 13 14 15 16 16 17 18 19 20 21 LCS_GDT W 367 W 367 6 6 15 4 5 5 6 6 7 8 11 12 13 13 13 13 13 16 16 18 19 20 21 LCS_GDT K 368 K 368 6 6 15 4 5 5 6 6 7 8 11 12 13 13 13 13 15 16 17 18 19 20 21 LCS_GDT K 369 K 369 6 6 15 4 5 5 6 6 7 8 11 12 13 13 13 13 13 16 16 17 18 20 21 LCS_GDT G 370 G 370 6 6 15 4 5 5 6 6 7 8 11 12 13 13 13 13 15 16 17 18 19 20 21 LCS_GDT T 371 T 371 4 8 15 4 4 4 7 7 8 8 11 12 13 13 13 13 13 16 16 17 18 20 21 LCS_GDT N 372 N 372 4 8 15 4 4 4 7 7 8 8 10 12 13 13 13 13 13 14 15 17 18 18 19 LCS_GDT G 373 G 373 4 8 15 4 4 4 6 7 8 8 9 12 13 13 13 13 13 14 15 17 18 18 19 LCS_GDT Y 374 Y 374 5 8 14 4 5 5 7 7 8 8 9 10 10 10 11 11 12 14 14 17 18 18 19 LCS_GDT P 375 P 375 5 8 12 4 5 5 7 7 8 8 9 10 10 10 11 11 12 12 14 17 18 18 19 LCS_GDT I 376 I 376 5 8 12 3 5 5 7 7 8 8 9 10 10 10 11 11 12 13 15 17 18 20 20 LCS_GDT F 377 F 377 5 8 12 4 5 5 7 7 8 8 9 10 10 10 11 11 13 15 17 18 19 20 20 LCS_GDT Q 378 Q 378 5 8 12 4 5 5 7 7 8 8 9 10 10 10 11 11 13 15 17 18 19 19 20 LCS_GDT W 379 W 379 3 6 12 3 3 4 4 6 7 8 9 10 10 10 11 11 12 15 17 18 19 19 20 LCS_GDT S 380 S 380 3 4 12 3 3 4 4 4 7 7 8 8 9 9 11 11 12 15 15 18 19 19 20 LCS_GDT E 381 E 381 3 4 12 0 3 4 4 4 7 7 8 8 9 9 10 10 13 15 17 18 19 19 20 LCS_AVERAGE LCS_A: 26.43 ( 13.53 18.00 47.76 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 7 7 8 8 11 12 13 13 14 15 16 16 17 18 19 20 21 GDT PERCENT_AT 12.90 16.13 16.13 22.58 22.58 25.81 25.81 35.48 38.71 41.94 41.94 45.16 48.39 51.61 51.61 54.84 58.06 61.29 64.52 67.74 GDT RMS_LOCAL 0.26 0.49 0.49 1.56 1.56 1.95 1.95 2.98 3.33 3.56 3.56 4.07 4.31 4.58 4.58 5.09 5.43 5.79 6.35 6.49 GDT RMS_ALL_AT 20.15 20.45 20.45 25.05 25.05 25.03 25.03 15.14 15.41 15.38 15.38 11.80 11.79 11.88 11.88 11.73 11.54 11.90 12.58 12.45 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: F 377 F 377 # possible swapping detected: E 381 E 381 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 16.577 0 0.200 0.272 18.588 0.000 0.000 LGA A 352 A 352 19.952 0 0.619 0.600 20.842 0.000 0.000 LGA E 353 E 353 20.392 0 0.073 0.809 20.916 0.000 0.000 LGA E 354 E 354 18.201 0 0.618 0.611 18.844 0.000 0.000 LGA L 355 L 355 20.089 0 0.051 0.199 27.066 0.000 0.000 LGA G 356 G 356 17.667 0 0.616 0.616 18.786 0.000 0.000 LGA N 357 N 357 11.604 0 0.579 1.360 13.372 0.000 3.095 LGA I 358 I 358 10.284 0 0.539 0.607 11.835 0.119 0.060 LGA I 359 I 359 10.173 0 0.609 1.593 12.772 0.119 0.060 LGA V 360 V 360 9.845 0 0.640 0.883 12.416 5.238 2.993 LGA A 361 A 361 3.621 0 0.699 0.634 6.047 40.119 43.524 LGA W 362 W 362 2.279 0 0.603 0.518 3.582 57.500 60.136 LGA N 363 N 363 2.551 0 0.327 1.266 3.587 59.048 61.369 LGA P 364 P 364 1.565 0 0.676 0.566 3.573 65.476 61.973 LGA N 365 N 365 3.877 0 0.694 1.122 9.612 55.595 30.714 LGA L 366 L 366 2.253 0 0.031 1.002 3.645 61.190 53.929 LGA W 367 W 367 3.961 0 0.089 1.102 11.799 50.119 17.143 LGA K 368 K 368 1.992 0 0.025 0.733 11.120 64.881 42.222 LGA K 369 K 369 3.395 0 0.113 1.190 7.547 59.405 35.238 LGA G 370 G 370 2.390 0 0.639 0.639 2.809 66.905 66.905 LGA T 371 T 371 3.707 0 0.705 0.974 6.870 42.738 35.374 LGA N 372 N 372 7.115 0 0.087 1.076 8.523 11.548 9.583 LGA G 373 G 373 8.158 0 0.638 0.638 11.521 3.690 3.690 LGA Y 374 Y 374 13.976 0 0.604 1.447 23.598 0.000 0.000 LGA P 375 P 375 15.937 0 0.042 0.272 17.374 0.000 0.000 LGA I 376 I 376 17.052 0 0.136 1.184 19.129 0.000 0.000 LGA F 377 F 377 20.533 0 0.328 1.605 22.029 0.000 0.000 LGA Q 378 Q 378 20.639 0 0.536 1.140 22.792 0.000 0.000 LGA W 379 W 379 27.305 0 0.592 0.998 30.800 0.000 0.000 LGA S 380 S 380 29.720 0 0.602 0.763 30.769 0.000 0.000 LGA E 381 E 381 33.136 0 0.072 0.765 39.725 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 10.735 10.620 11.653 20.764 17.033 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 11 2.98 32.258 28.439 0.357 LGA_LOCAL RMSD: 2.985 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.140 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 10.735 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.617793 * X + 0.786185 * Y + 0.015654 * Z + 21.501719 Y_new = -0.627568 * X + 0.504950 * Y + -0.592608 * Z + 18.416901 Z_new = -0.473804 * X + 0.356285 * Y + 0.805339 * Z + 69.370369 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.793247 0.493605 0.416519 [DEG: -45.4497 28.2815 23.8648 ] ZXZ: 0.026409 0.634549 -0.926037 [DEG: 1.5131 36.3570 -53.0580 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS014_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS014_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 11 2.98 28.439 10.73 REMARK ---------------------------------------------------------- MOLECULE T0537TS014_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT N/A ATOM 2529 N SER 351 3.053 2.671 62.431 1.00 0.00 25 ATOM 2530 CA SER 351 4.122 2.584 63.372 1.00 0.00 25 ATOM 2531 CB SER 351 3.708 2.955 64.811 1.00 0.00 25 ATOM 2532 OG SER 351 2.681 2.092 65.280 1.00 0.00 25 ATOM 2533 C SER 351 4.526 1.157 63.343 1.00 0.00 25 ATOM 2534 O SER 351 3.825 0.281 63.847 1.00 0.00 25 ATOM 2535 N ALA 352 5.687 0.892 62.728 1.00 0.00 25 ATOM 2536 CA ALA 352 6.103 -0.467 62.609 1.00 0.00 25 ATOM 2537 CB ALA 352 7.290 -0.661 61.651 1.00 0.00 25 ATOM 2538 C ALA 352 6.511 -0.951 63.957 1.00 0.00 25 ATOM 2539 O ALA 352 7.067 -0.212 64.768 1.00 0.00 25 ATOM 2540 N GLU 353 6.204 -2.230 64.227 1.00 0.00 25 ATOM 2541 CA GLU 353 6.558 -2.869 65.456 1.00 0.00 25 ATOM 2542 CB GLU 353 5.883 -4.241 65.612 1.00 0.00 25 ATOM 2543 CG GLU 353 4.367 -4.093 65.753 1.00 0.00 25 ATOM 2544 CD GLU 353 3.739 -5.467 65.903 1.00 0.00 25 ATOM 2545 OE1 GLU 353 4.501 -6.465 66.008 1.00 0.00 25 ATOM 2546 OE2 GLU 353 2.481 -5.532 65.909 1.00 0.00 25 ATOM 2547 C GLU 353 8.045 -3.022 65.471 1.00 0.00 25 ATOM 2548 O GLU 353 8.671 -2.973 66.529 1.00 0.00 25 ATOM 2549 N GLU 354 8.652 -3.215 64.282 1.00 0.00 25 ATOM 2550 CA GLU 354 10.076 -3.383 64.219 1.00 0.00 25 ATOM 2551 CB GLU 354 10.657 -3.636 62.818 1.00 0.00 25 ATOM 2552 CG GLU 354 10.455 -5.034 62.250 1.00 0.00 25 ATOM 2553 CD GLU 354 11.212 -5.066 60.931 1.00 0.00 25 ATOM 2554 OE1 GLU 354 10.846 -4.273 60.022 1.00 0.00 25 ATOM 2555 OE2 GLU 354 12.174 -5.872 60.815 1.00 0.00 25 ATOM 2556 C GLU 354 10.722 -2.114 64.655 1.00 0.00 25 ATOM 2557 O GLU 354 10.206 -1.020 64.435 1.00 0.00 25 ATOM 2558 N LEU 355 11.893 -2.247 65.301 1.00 0.00 25 ATOM 2559 CA LEU 355 12.619 -1.100 65.741 1.00 0.00 25 ATOM 2560 CB LEU 355 13.871 -1.445 66.569 1.00 0.00 25 ATOM 2561 CG LEU 355 13.535 -2.087 67.929 1.00 0.00 25 ATOM 2562 CD1 LEU 355 14.805 -2.373 68.745 1.00 0.00 25 ATOM 2563 CD2 LEU 355 12.508 -1.241 68.699 1.00 0.00 25 ATOM 2564 C LEU 355 13.043 -0.335 64.528 1.00 0.00 25 ATOM 2565 O LEU 355 13.023 0.893 64.527 1.00 0.00 25 ATOM 2566 N GLY 356 13.446 -1.044 63.457 1.00 0.00 25 ATOM 2567 CA GLY 356 13.857 -0.344 62.276 1.00 0.00 25 ATOM 2568 C GLY 356 12.677 -0.243 61.366 1.00 0.00 25 ATOM 2569 O GLY 356 11.970 -1.222 61.134 1.00 0.00 25 ATOM 2570 N ASN 357 12.447 0.966 60.815 1.00 0.00 25 ATOM 2571 CA ASN 357 11.361 1.190 59.906 1.00 0.00 25 ATOM 2572 CB ASN 357 10.705 2.574 60.052 1.00 0.00 25 ATOM 2573 CG ASN 357 11.749 3.652 59.798 1.00 0.00 25 ATOM 2574 OD1 ASN 357 12.936 3.375 59.633 1.00 0.00 25 ATOM 2575 ND2 ASN 357 11.292 4.934 59.786 1.00 0.00 25 ATOM 2576 C ASN 357 11.910 1.083 58.526 1.00 0.00 25 ATOM 2577 O ASN 357 13.111 0.889 58.348 1.00 0.00 25 ATOM 2578 N ILE 358 11.043 1.160 57.498 1.00 0.00 25 ATOM 2579 CA ILE 358 11.608 1.090 56.185 1.00 0.00 25 ATOM 2580 CB ILE 358 10.781 0.308 55.205 1.00 0.00 25 ATOM 2581 CG2 ILE 358 11.440 0.430 53.820 1.00 0.00 25 ATOM 2582 CG1 ILE 358 10.634 -1.150 55.675 1.00 0.00 25 ATOM 2583 CD1 ILE 358 9.608 -1.949 54.872 1.00 0.00 25 ATOM 2584 C ILE 358 11.711 2.487 55.670 1.00 0.00 25 ATOM 2585 O ILE 358 10.926 2.924 54.830 1.00 0.00 25 ATOM 2586 N ILE 359 12.708 3.230 56.182 1.00 0.00 25 ATOM 2587 CA ILE 359 12.965 4.545 55.689 1.00 0.00 25 ATOM 2588 CB ILE 359 12.620 5.654 56.641 1.00 0.00 25 ATOM 2589 CG2 ILE 359 11.102 5.648 56.846 1.00 0.00 25 ATOM 2590 CG1 ILE 359 13.437 5.548 57.939 1.00 0.00 25 ATOM 2591 CD1 ILE 359 13.345 6.799 58.813 1.00 0.00 25 ATOM 2592 C ILE 359 14.433 4.613 55.474 1.00 0.00 25 ATOM 2593 O ILE 359 15.211 4.209 56.336 1.00 0.00 25 ATOM 2594 N VAL 360 14.855 5.104 54.297 1.00 0.00 25 ATOM 2595 CA VAL 360 16.263 5.226 54.090 1.00 0.00 25 ATOM 2596 CB VAL 360 16.647 5.464 52.658 1.00 0.00 25 ATOM 2597 CG1 VAL 360 16.008 6.783 52.192 1.00 0.00 25 ATOM 2598 CG2 VAL 360 18.181 5.454 52.556 1.00 0.00 25 ATOM 2599 C VAL 360 16.684 6.413 54.881 1.00 0.00 25 ATOM 2600 O VAL 360 16.026 7.453 54.856 1.00 0.00 26 ATOM 2601 N ALA 361 17.794 6.278 55.630 1.00 0.00 26 ATOM 2602 CA ALA 361 18.247 7.383 56.415 1.00 0.00 26 ATOM 2603 CB ALA 361 18.163 7.133 57.929 1.00 0.00 26 ATOM 2604 C ALA 361 19.682 7.615 56.078 1.00 0.00 26 ATOM 2605 O ALA 361 20.426 6.678 55.796 1.00 0.00 26 ATOM 2606 N TRP 362 20.094 8.897 56.118 1.00 0.00 26 ATOM 2607 CA TRP 362 21.435 9.306 55.808 1.00 0.00 26 ATOM 2608 CB TRP 362 21.533 10.603 54.981 1.00 0.00 26 ATOM 2609 CG TRP 362 21.066 10.582 53.545 1.00 0.00 26 ATOM 2610 CD2 TRP 362 21.147 11.740 52.700 1.00 0.00 26 ATOM 2611 CD1 TRP 362 20.533 9.581 52.785 1.00 0.00 26 ATOM 2612 NE1 TRP 362 20.282 10.045 51.513 1.00 0.00 26 ATOM 2613 CE2 TRP 362 20.656 11.373 51.448 1.00 0.00 26 ATOM 2614 CE3 TRP 362 21.599 13.003 52.949 1.00 0.00 26 ATOM 2615 CZ2 TRP 362 20.611 12.272 50.420 1.00 0.00 26 ATOM 2616 CZ3 TRP 362 21.550 13.907 51.912 1.00 0.00 26 ATOM 2617 CH2 TRP 362 21.066 13.548 50.672 1.00 0.00 26 ATOM 2618 C TRP 362 22.067 9.689 57.105 1.00 0.00 26 ATOM 2619 O TRP 362 21.487 9.515 58.175 1.00 0.00 26 ATOM 2620 N ASN 363 23.306 10.210 57.033 1.00 0.00 26 ATOM 2621 CA ASN 363 23.986 10.672 58.206 1.00 0.00 26 ATOM 2622 CB ASN 363 25.433 11.108 57.951 1.00 0.00 26 ATOM 2623 CG ASN 363 25.359 12.175 56.878 1.00 0.00 26 ATOM 2624 OD1 ASN 363 25.151 11.846 55.711 1.00 0.00 26 ATOM 2625 ND2 ASN 363 25.509 13.467 57.274 1.00 0.00 26 ATOM 2626 C ASN 363 23.228 11.859 58.701 1.00 0.00 26 ATOM 2627 O ASN 363 22.342 12.374 58.022 1.00 0.00 26 ATOM 2628 N PRO 364 23.540 12.291 59.893 1.00 0.00 26 ATOM 2629 CA PRO 364 22.813 13.385 60.470 1.00 0.00 26 ATOM 2630 CD PRO 364 24.106 11.413 60.906 1.00 0.00 26 ATOM 2631 CB PRO 364 23.232 13.442 61.937 1.00 0.00 26 ATOM 2632 CG PRO 364 23.626 11.985 62.253 1.00 0.00 26 ATOM 2633 C PRO 364 23.005 14.660 59.718 1.00 0.00 26 ATOM 2634 O PRO 364 24.127 14.967 59.320 1.00 0.00 26 ATOM 2635 N ASN 365 21.913 15.426 59.537 1.00 0.00 26 ATOM 2636 CA ASN 365 21.945 16.643 58.780 1.00 0.00 26 ATOM 2637 CB ASN 365 20.558 17.092 58.293 1.00 0.00 26 ATOM 2638 CG ASN 365 20.013 16.034 57.345 1.00 0.00 26 ATOM 2639 OD1 ASN 365 18.865 16.109 56.907 1.00 0.00 26 ATOM 2640 ND2 ASN 365 20.856 15.016 57.026 1.00 0.00 26 ATOM 2641 C ASN 365 22.467 17.754 59.631 1.00 0.00 26 ATOM 2642 O ASN 365 22.339 17.736 60.857 1.00 0.00 26 ATOM 2643 N LEU 366 23.148 18.719 58.979 1.00 0.00 26 ATOM 2644 CA LEU 366 23.614 19.903 59.640 1.00 0.00 26 ATOM 2645 CB LEU 366 24.543 20.746 58.748 1.00 0.00 26 ATOM 2646 CG LEU 366 25.845 20.032 58.346 1.00 0.00 26 ATOM 2647 CD1 LEU 366 26.716 19.730 59.576 1.00 0.00 26 ATOM 2648 CD2 LEU 366 25.554 18.795 57.479 1.00 0.00 26 ATOM 2649 C LEU 366 22.439 20.774 59.970 1.00 0.00 26 ATOM 2650 O LEU 366 22.276 21.206 61.109 1.00 0.00 26 ATOM 2651 N TRP 367 21.568 21.033 58.966 1.00 0.00 26 ATOM 2652 CA TRP 367 20.432 21.893 59.165 1.00 0.00 26 ATOM 2653 CB TRP 367 20.544 23.291 58.525 1.00 0.00 26 ATOM 2654 CG TRP 367 21.615 24.194 59.085 1.00 0.00 26 ATOM 2655 CD2 TRP 367 22.862 24.458 58.423 1.00 0.00 26 ATOM 2656 CD1 TRP 367 21.610 24.957 60.215 1.00 0.00 26 ATOM 2657 NE1 TRP 367 22.781 25.674 60.305 1.00 0.00 26 ATOM 2658 CE2 TRP 367 23.559 25.378 59.206 1.00 0.00 26 ATOM 2659 CE3 TRP 367 23.379 23.980 57.253 1.00 0.00 26 ATOM 2660 CZ2 TRP 367 24.789 25.838 58.827 1.00 0.00 26 ATOM 2661 CZ3 TRP 367 24.623 24.439 56.878 1.00 0.00 26 ATOM 2662 CH2 TRP 367 25.314 25.349 57.650 1.00 0.00 26 ATOM 2663 C TRP 367 19.251 21.253 58.507 1.00 0.00 26 ATOM 2664 O TRP 367 19.398 20.319 57.720 1.00 0.00 26 ATOM 2665 N LYS 368 18.031 21.744 58.815 1.00 0.00 26 ATOM 2666 CA LYS 368 16.884 21.120 58.226 1.00 0.00 26 ATOM 2667 CB LYS 368 16.149 20.180 59.199 1.00 0.00 26 ATOM 2668 CG LYS 368 15.106 19.275 58.538 1.00 0.00 26 ATOM 2669 CD LYS 368 14.656 18.128 59.446 1.00 0.00 26 ATOM 2670 CE LYS 368 13.619 17.201 58.809 1.00 0.00 26 ATOM 2671 NZ LYS 368 13.300 16.089 59.731 1.00 0.00 26 ATOM 2672 C LYS 368 15.905 22.156 57.793 1.00 0.00 26 ATOM 2673 O LYS 368 15.875 23.278 58.299 1.00 0.00 26 ATOM 2674 N LYS 369 15.081 21.797 56.794 1.00 0.00 26 ATOM 2675 CA LYS 369 14.037 22.693 56.419 1.00 0.00 26 ATOM 2676 CB LYS 369 13.432 22.434 55.025 1.00 0.00 26 ATOM 2677 CG LYS 369 12.489 21.232 54.943 1.00 0.00 26 ATOM 2678 CD LYS 369 11.691 21.200 53.637 1.00 0.00 26 ATOM 2679 CE LYS 369 10.502 20.238 53.659 1.00 0.00 26 ATOM 2680 NZ LYS 369 10.967 18.859 53.931 1.00 0.00 26 ATOM 2681 C LYS 369 12.998 22.434 57.452 1.00 0.00 26 ATOM 2682 O LYS 369 13.019 21.406 58.122 1.00 0.00 26 ATOM 2683 N GLY 370 12.066 23.364 57.661 1.00 0.00 26 ATOM 2684 CA GLY 370 11.133 23.087 58.705 1.00 0.00 26 ATOM 2685 C GLY 370 11.667 23.826 59.870 1.00 0.00 26 ATOM 2686 O GLY 370 10.959 24.124 60.830 1.00 0.00 26 ATOM 2687 N THR 371 12.961 24.173 59.770 1.00 0.00 26 ATOM 2688 CA THR 371 13.564 25.002 60.749 1.00 0.00 26 ATOM 2689 CB THR 371 15.061 25.044 60.635 1.00 0.00 26 ATOM 2690 OG1 THR 371 15.601 23.743 60.818 1.00 0.00 26 ATOM 2691 CG2 THR 371 15.619 26.009 61.689 1.00 0.00 26 ATOM 2692 C THR 371 13.019 26.322 60.355 1.00 0.00 26 ATOM 2693 O THR 371 12.378 26.431 59.318 1.00 0.00 26 ATOM 2694 N ASN 372 13.172 27.352 61.186 1.00 0.00 26 ATOM 2695 CA ASN 372 12.595 28.613 60.830 1.00 0.00 26 ATOM 2696 CB ASN 372 13.095 29.171 59.488 1.00 0.00 26 ATOM 2697 CG ASN 372 14.530 29.629 59.705 1.00 0.00 26 ATOM 2698 OD1 ASN 372 15.088 29.448 60.786 1.00 0.00 26 ATOM 2699 ND2 ASN 372 15.143 30.252 58.660 1.00 0.00 26 ATOM 2700 C ASN 372 11.113 28.437 60.770 1.00 0.00 27 ATOM 2701 O ASN 372 10.401 29.257 60.190 1.00 0.00 27 ATOM 2702 N GLY 373 10.612 27.355 61.397 1.00 0.00 27 ATOM 2703 CA GLY 373 9.202 27.165 61.527 1.00 0.00 27 ATOM 2704 C GLY 373 8.997 27.448 62.971 1.00 0.00 27 ATOM 2705 O GLY 373 9.386 26.669 63.837 1.00 0.00 27 ATOM 2706 N TYR 374 8.380 28.597 63.262 1.00 0.00 27 ATOM 2707 CA TYR 374 8.254 29.040 64.617 1.00 0.00 27 ATOM 2708 CB TYR 374 7.662 30.459 64.701 1.00 0.00 27 ATOM 2709 CG TYR 374 7.623 30.861 66.133 1.00 0.00 27 ATOM 2710 CD1 TYR 374 8.753 31.352 66.746 1.00 0.00 27 ATOM 2711 CD2 TYR 374 6.461 30.755 66.861 1.00 0.00 27 ATOM 2712 CE1 TYR 374 8.731 31.731 68.068 1.00 0.00 27 ATOM 2713 CE2 TYR 374 6.432 31.132 68.183 1.00 0.00 27 ATOM 2714 CZ TYR 374 7.567 31.618 68.788 1.00 0.00 27 ATOM 2715 OH TYR 374 7.537 32.004 70.145 1.00 0.00 27 ATOM 2716 C TYR 374 7.385 28.107 65.404 1.00 0.00 27 ATOM 2717 O TYR 374 7.714 27.763 66.537 1.00 0.00 27 ATOM 2718 N PRO 375 6.281 27.678 64.856 1.00 0.00 27 ATOM 2719 CA PRO 375 5.421 26.806 65.604 1.00 0.00 27 ATOM 2720 CD PRO 375 5.545 28.454 63.877 1.00 0.00 27 ATOM 2721 CB PRO 375 4.053 26.870 64.922 1.00 0.00 27 ATOM 2722 CG PRO 375 4.310 27.588 63.586 1.00 0.00 27 ATOM 2723 C PRO 375 6.009 25.439 65.705 1.00 0.00 27 ATOM 2724 O PRO 375 6.664 25.001 64.762 1.00 0.00 27 ATOM 2725 N ILE 376 5.791 24.745 66.837 1.00 0.00 27 ATOM 2726 CA ILE 376 6.344 23.431 66.979 1.00 0.00 27 ATOM 2727 CB ILE 376 7.395 23.315 68.045 1.00 0.00 27 ATOM 2728 CG2 ILE 376 6.740 23.636 69.398 1.00 0.00 27 ATOM 2729 CG1 ILE 376 8.070 21.934 67.979 1.00 0.00 27 ATOM 2730 CD1 ILE 376 9.373 21.848 68.776 1.00 0.00 27 ATOM 2731 C ILE 376 5.238 22.512 67.341 1.00 0.00 27 ATOM 2732 O ILE 376 4.282 22.910 68.005 1.00 0.00 27 ATOM 2733 N PHE 377 5.320 21.252 66.873 1.00 0.00 27 ATOM 2734 CA PHE 377 4.259 20.363 67.210 1.00 0.00 27 ATOM 2735 CB PHE 377 3.737 19.532 66.017 1.00 0.00 27 ATOM 2736 CG PHE 377 4.839 18.748 65.387 1.00 0.00 27 ATOM 2737 CD1 PHE 377 5.788 19.386 64.621 1.00 0.00 27 ATOM 2738 CD2 PHE 377 4.908 17.379 65.519 1.00 0.00 27 ATOM 2739 CE1 PHE 377 6.802 18.678 64.022 1.00 0.00 27 ATOM 2740 CE2 PHE 377 5.921 16.663 64.923 1.00 0.00 27 ATOM 2741 CZ PHE 377 6.873 17.314 64.175 1.00 0.00 27 ATOM 2742 C PHE 377 4.679 19.452 68.315 1.00 0.00 27 ATOM 2743 O PHE 377 5.042 18.297 68.097 1.00 0.00 27 ATOM 2744 N GLN 378 4.636 19.976 69.553 1.00 0.00 27 ATOM 2745 CA GLN 378 4.862 19.164 70.709 1.00 0.00 27 ATOM 2746 CB GLN 378 6.140 19.497 71.499 1.00 0.00 27 ATOM 2747 CG GLN 378 7.453 19.161 70.793 1.00 0.00 27 ATOM 2748 CD GLN 378 8.580 19.526 71.752 1.00 0.00 27 ATOM 2749 OE1 GLN 378 9.628 18.883 71.771 1.00 0.00 27 ATOM 2750 NE2 GLN 378 8.359 20.585 72.578 1.00 0.00 27 ATOM 2751 C GLN 378 3.725 19.491 71.615 1.00 0.00 27 ATOM 2752 O GLN 378 3.872 20.297 72.533 1.00 0.00 27 ATOM 2753 N TRP 379 2.549 18.874 71.387 1.00 0.00 27 ATOM 2754 CA TRP 379 1.459 19.227 72.240 1.00 0.00 27 ATOM 2755 CB TRP 379 0.065 18.902 71.678 1.00 0.00 27 ATOM 2756 CG TRP 379 -0.344 19.806 70.545 1.00 0.00 27 ATOM 2757 CD2 TRP 379 -0.035 19.552 69.168 1.00 0.00 27 ATOM 2758 CD1 TRP 379 -1.040 20.980 70.577 1.00 0.00 27 ATOM 2759 NE1 TRP 379 -1.179 21.476 69.303 1.00 0.00 27 ATOM 2760 CE2 TRP 379 -0.566 20.606 68.427 1.00 0.00 27 ATOM 2761 CE3 TRP 379 0.638 18.525 68.574 1.00 0.00 27 ATOM 2762 CZ2 TRP 379 -0.430 20.647 67.068 1.00 0.00 27 ATOM 2763 CZ3 TRP 379 0.771 18.569 67.204 1.00 0.00 27 ATOM 2764 CH2 TRP 379 0.248 19.610 66.466 1.00 0.00 27 ATOM 2765 C TRP 379 1.617 18.506 73.529 1.00 0.00 27 ATOM 2766 O TRP 379 1.701 17.279 73.573 1.00 0.00 27 ATOM 2767 N SER 380 1.687 19.287 74.620 1.00 0.00 27 ATOM 2768 CA SER 380 1.778 18.735 75.932 1.00 0.00 27 ATOM 2769 CB SER 380 2.086 19.800 76.999 1.00 0.00 27 ATOM 2770 OG SER 380 1.026 20.742 77.071 1.00 0.00 27 ATOM 2771 C SER 380 0.447 18.141 76.246 1.00 0.00 27 ATOM 2772 O SER 380 0.346 17.084 76.864 1.00 0.00 27 ATOM 2773 N GLU 381 -0.619 18.834 75.805 1.00 0.00 27 ATOM 2774 CA GLU 381 -1.962 18.402 76.047 1.00 0.00 27 ATOM 2775 CB GLU 381 -2.746 19.375 76.936 1.00 0.00 27 ATOM 2776 CG GLU 381 -4.182 18.927 77.204 1.00 0.00 27 ATOM 2777 CD GLU 381 -4.852 19.985 78.066 1.00 0.00 27 ATOM 2778 OE1 GLU 381 -4.122 20.855 78.612 1.00 0.00 27 ATOM 2779 OE2 GLU 381 -6.105 19.942 78.186 1.00 0.00 27 ATOM 2780 C GLU 381 -2.677 18.404 74.704 1.00 0.00 27 ATOM 2781 O GLU 381 -2.702 19.483 74.054 1.00 0.00 27 ATOM 2782 OXT GLU 381 -3.197 17.327 74.305 1.00 0.00 27 TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 98.35 40.0 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 106.21 31.8 22 100.0 22 ARMSMC SURFACE . . . . . . . . 91.66 42.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 126.61 30.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.16 38.5 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 94.54 40.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 85.81 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 94.52 43.5 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 99.98 0.0 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.47 72.7 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 49.67 81.2 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 12.87 100.0 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 62.90 75.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 44.73 50.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.17 50.0 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 44.32 60.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 42.14 50.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 61.17 50.0 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.58 50.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 84.58 50.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 84.58 50.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.73 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.73 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.3463 CRMSCA SECONDARY STRUCTURE . . 7.46 11 100.0 11 CRMSCA SURFACE . . . . . . . . 10.82 26 100.0 26 CRMSCA BURIED . . . . . . . . 10.28 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.74 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 7.47 54 100.0 54 CRMSMC SURFACE . . . . . . . . 10.82 129 100.0 129 CRMSMC BURIED . . . . . . . . 10.28 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.70 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 12.77 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 8.77 41 100.0 41 CRMSSC SURFACE . . . . . . . . 12.79 120 100.0 120 CRMSSC BURIED . . . . . . . . 11.56 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.73 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.09 85 100.0 85 CRMSALL SURFACE . . . . . . . . 11.87 224 100.0 224 CRMSALL BURIED . . . . . . . . 10.62 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.692 1.000 0.500 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 7.206 1.000 0.500 11 100.0 11 ERRCA SURFACE . . . . . . . . 9.622 1.000 0.500 26 100.0 26 ERRCA BURIED . . . . . . . . 10.059 1.000 0.500 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.711 1.000 0.500 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 7.189 1.000 0.500 54 100.0 54 ERRMC SURFACE . . . . . . . . 9.663 1.000 0.500 129 100.0 129 ERRMC BURIED . . . . . . . . 9.983 1.000 0.500 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.579 1.000 0.500 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 11.622 1.000 0.500 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 8.170 1.000 0.500 41 100.0 41 ERRSC SURFACE . . . . . . . . 11.637 1.000 0.500 120 100.0 120 ERRSC BURIED . . . . . . . . 10.881 1.000 0.500 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.641 1.000 0.500 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 7.665 1.000 0.500 85 100.0 85 ERRALL SURFACE . . . . . . . . 10.699 1.000 0.500 224 100.0 224 ERRALL BURIED . . . . . . . . 10.208 1.000 0.500 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 4 18 31 31 DISTCA CA (P) 0.00 0.00 6.45 12.90 58.06 31 DISTCA CA (RMS) 0.00 0.00 2.65 3.12 6.66 DISTCA ALL (N) 0 1 6 26 131 254 254 DISTALL ALL (P) 0.00 0.39 2.36 10.24 51.57 254 DISTALL ALL (RMS) 0.00 1.70 2.49 3.67 6.85 DISTALL END of the results output