####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 31 ( 312), selected 31 , name T0537TS002_1-D2 # Molecule2: number of CA atoms 31 ( 254), selected 31 , name T0537-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0537TS002_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 355 - 371 4.93 9.69 LCS_AVERAGE: 48.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 372 - 378 1.47 11.72 LCS_AVERAGE: 17.59 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 373 - 377 0.98 12.38 LCS_AVERAGE: 11.65 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 31 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 351 S 351 3 3 9 0 3 3 3 3 6 8 10 12 14 14 15 18 19 20 22 25 27 29 30 LCS_GDT A 352 A 352 3 3 9 2 3 3 3 7 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT E 353 E 353 3 3 11 2 3 5 5 8 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT E 354 E 354 3 4 12 0 3 3 4 8 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT L 355 L 355 3 4 17 0 3 3 4 4 7 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT G 356 G 356 3 4 17 0 3 3 4 4 6 7 9 11 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT N 357 N 357 3 4 17 2 3 3 4 4 5 9 10 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT I 358 I 358 3 5 17 2 3 3 4 5 5 7 10 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT I 359 I 359 3 5 17 3 3 3 4 6 7 8 9 11 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT V 360 V 360 3 5 17 3 3 3 5 7 7 8 9 11 14 15 15 18 19 21 22 25 27 29 30 LCS_GDT A 361 A 361 3 5 17 3 3 4 4 6 7 8 9 10 14 15 16 18 19 21 23 25 27 29 30 LCS_GDT W 362 W 362 4 5 17 3 3 4 5 5 6 7 9 11 14 15 15 18 19 21 23 25 27 29 30 LCS_GDT N 363 N 363 4 5 17 3 3 4 5 5 6 7 9 10 13 15 16 18 19 21 23 25 27 29 30 LCS_GDT P 364 P 364 4 5 17 3 3 4 5 5 6 8 10 11 13 15 16 18 19 21 23 25 27 29 30 LCS_GDT N 365 N 365 4 6 17 3 3 4 5 6 8 9 10 11 13 15 16 18 19 21 23 25 27 29 30 LCS_GDT L 366 L 366 4 6 17 3 3 4 5 6 8 9 10 11 13 15 16 18 19 21 23 25 27 29 30 LCS_GDT W 367 W 367 4 6 17 3 3 4 5 6 8 9 10 11 13 15 16 18 19 21 23 25 27 29 30 LCS_GDT K 368 K 368 4 6 17 3 3 4 5 6 8 9 10 11 13 15 16 18 18 21 23 24 24 26 27 LCS_GDT K 369 K 369 4 6 17 1 3 4 5 6 8 9 10 11 13 15 16 18 18 21 23 25 26 28 30 LCS_GDT G 370 G 370 3 6 17 2 3 3 5 6 7 9 10 11 13 15 16 18 19 21 23 25 27 29 30 LCS_GDT T 371 T 371 3 6 17 3 3 3 4 5 7 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT N 372 N 372 3 7 15 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT G 373 G 373 5 7 15 3 4 5 6 7 7 8 10 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT Y 374 Y 374 5 7 15 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT P 375 P 375 5 7 15 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 LCS_GDT I 376 I 376 5 7 15 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 22 25 27 29 30 LCS_GDT F 377 F 377 5 7 13 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 22 24 27 29 30 LCS_GDT Q 378 Q 378 4 7 13 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 22 25 27 29 30 LCS_GDT W 379 W 379 3 6 13 3 3 3 5 7 7 11 12 12 14 17 17 18 19 21 22 24 27 29 30 LCS_GDT S 380 S 380 3 6 13 3 3 3 5 7 7 7 9 11 14 15 15 18 19 20 22 24 26 29 30 LCS_GDT E 381 E 381 3 6 13 3 3 3 5 7 7 7 9 11 14 15 15 18 19 20 22 24 26 29 30 LCS_AVERAGE LCS_A: 26.05 ( 11.65 17.59 48.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 8 9 11 12 12 14 17 17 18 19 21 23 25 27 29 30 GDT PERCENT_AT 9.68 12.90 16.13 19.35 25.81 29.03 35.48 38.71 38.71 45.16 54.84 54.84 58.06 61.29 67.74 74.19 80.65 87.10 93.55 96.77 GDT RMS_LOCAL 0.07 0.47 0.82 1.07 1.93 2.05 2.53 2.73 2.73 3.21 4.06 4.06 4.33 4.61 5.35 5.73 6.38 6.76 7.01 7.16 GDT RMS_ALL_AT 13.37 11.37 11.37 11.33 9.86 9.86 10.01 10.15 10.15 10.25 9.20 9.20 9.17 9.24 9.14 8.83 7.79 7.47 7.42 7.38 # Checking swapping # possible swapping detected: E 353 E 353 # possible swapping detected: E 354 E 354 # possible swapping detected: Y 374 Y 374 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 351 S 351 6.049 0 0.440 0.737 8.503 16.905 17.302 LGA A 352 A 352 2.775 0 0.632 0.603 3.812 52.143 56.286 LGA E 353 E 353 1.734 0 0.618 0.913 5.842 65.595 51.640 LGA E 354 E 354 3.292 0 0.614 1.102 11.973 61.071 30.053 LGA L 355 L 355 3.288 0 0.646 0.697 9.158 55.476 33.155 LGA G 356 G 356 6.518 0 0.605 0.605 6.518 24.524 24.524 LGA N 357 N 357 8.194 0 0.574 0.703 10.659 4.881 2.619 LGA I 358 I 358 9.373 0 0.625 0.651 10.246 2.500 1.369 LGA I 359 I 359 8.931 0 0.531 1.468 11.577 1.071 2.619 LGA V 360 V 360 13.547 0 0.337 0.375 17.477 0.000 0.000 LGA A 361 A 361 16.886 0 0.673 0.603 17.557 0.000 0.000 LGA W 362 W 362 17.311 0 0.046 1.222 22.161 0.000 0.000 LGA N 363 N 363 18.373 0 0.244 1.040 21.594 0.000 0.000 LGA P 364 P 364 17.255 0 0.699 0.762 21.307 0.000 0.000 LGA N 365 N 365 17.165 0 0.714 1.282 18.428 0.000 0.000 LGA L 366 L 366 16.723 0 0.604 0.582 19.775 0.000 0.000 LGA W 367 W 367 14.561 0 0.057 1.204 17.019 0.000 0.000 LGA K 368 K 368 14.330 0 0.519 0.843 16.464 0.000 0.000 LGA K 369 K 369 10.324 0 0.027 1.099 13.546 1.071 0.476 LGA G 370 G 370 8.204 0 0.611 0.611 8.204 12.262 12.262 LGA T 371 T 371 3.294 0 0.618 0.584 5.530 53.690 46.190 LGA N 372 N 372 2.908 0 0.235 1.249 7.143 48.333 34.881 LGA G 373 G 373 5.637 0 0.685 0.685 5.637 33.214 33.214 LGA Y 374 Y 374 2.480 0 0.168 1.178 7.280 61.429 45.000 LGA P 375 P 375 1.217 0 0.247 0.272 2.384 77.262 76.599 LGA I 376 I 376 1.539 0 0.170 1.149 6.566 79.405 60.893 LGA F 377 F 377 2.035 0 0.169 1.163 5.109 57.500 53.723 LGA Q 378 Q 378 2.975 0 0.668 1.324 9.905 61.190 31.481 LGA W 379 W 379 3.833 0 0.630 1.283 11.462 39.881 18.231 LGA S 380 S 380 7.719 0 0.107 0.677 9.352 8.571 6.746 LGA E 381 E 381 11.287 0 0.367 0.897 14.232 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 31 124 124 100.00 254 254 100.00 31 SUMMARY(RMSD_GDC): 7.369 7.255 8.830 26.386 20.621 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 31 31 4.0 12 2.73 36.290 31.872 0.424 LGA_LOCAL RMSD: 2.729 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.146 Number of assigned atoms: 31 Std_ASGN_ATOMS RMSD: 7.369 Standard rmsd on all 31 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.825116 * X + -0.414071 * Y + 0.384355 * Z + 0.700679 Y_new = -0.528812 * X + -0.805496 * Y + 0.267459 * Z + 4.453977 Z_new = 0.198849 * X + -0.423936 * Y + -0.883593 * Z + 72.705750 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.569947 -0.200184 -2.694247 [DEG: -32.6556 -11.4697 -154.3690 ] ZXZ: 2.178741 2.654278 2.703006 [DEG: 124.8327 152.0789 154.8708 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0537TS002_1-D2 REMARK 2: T0537-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0537TS002_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 31 31 4.0 12 2.73 31.872 7.37 REMARK ---------------------------------------------------------- MOLECULE T0537TS002_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0537 REMARK MODEL 1 REMARK PARENT 1HG8A ATOM 3113 N SER 351 -0.414 17.261 53.621 1.00 50.00 N ATOM 3114 CA SER 351 0.085 15.926 53.514 1.00 50.00 C ATOM 3115 C SER 351 1.385 15.914 52.782 1.00 50.00 C ATOM 3116 O SER 351 1.518 15.251 51.753 1.00 50.00 O ATOM 3117 H SER 351 -0.665 17.584 54.422 1.00 50.00 H ATOM 3118 CB SER 351 -0.934 15.028 52.810 1.00 50.00 C ATOM 3119 HG SER 351 -2.467 15.718 53.619 1.00 50.00 H ATOM 3120 OG SER 351 -2.145 14.957 53.545 1.00 50.00 O ATOM 3121 N ALA 352 2.383 16.667 53.282 1.00 50.00 N ATOM 3122 CA ALA 352 3.668 16.602 52.655 1.00 50.00 C ATOM 3123 C ALA 352 4.542 15.837 53.591 1.00 50.00 C ATOM 3124 O ALA 352 4.603 16.137 54.782 1.00 50.00 O ATOM 3125 H ALA 352 2.256 17.204 53.993 1.00 50.00 H ATOM 3126 CB ALA 352 4.190 18.002 52.370 1.00 50.00 C ATOM 3127 N GLU 353 5.231 14.800 53.077 1.00 50.00 N ATOM 3128 CA GLU 353 6.099 14.040 53.925 1.00 50.00 C ATOM 3129 C GLU 353 7.452 14.084 53.303 1.00 50.00 C ATOM 3130 O GLU 353 7.583 14.004 52.084 1.00 50.00 O ATOM 3131 H GLU 353 5.149 14.583 52.208 1.00 50.00 H ATOM 3132 CB GLU 353 5.576 12.611 54.085 1.00 50.00 C ATOM 3133 CD GLU 353 3.747 11.087 54.927 1.00 50.00 C ATOM 3134 CG GLU 353 4.228 12.516 54.779 1.00 50.00 C ATOM 3135 OE1 GLU 353 4.419 10.176 54.398 1.00 50.00 O ATOM 3136 OE2 GLU 353 2.699 10.876 55.573 1.00 50.00 O ATOM 3137 N GLU 354 8.507 14.236 54.127 1.00 50.00 N ATOM 3138 CA GLU 354 9.811 14.305 53.540 1.00 50.00 C ATOM 3139 C GLU 354 10.750 13.423 54.294 1.00 50.00 C ATOM 3140 O GLU 354 10.789 13.430 55.521 1.00 50.00 O ATOM 3141 H GLU 354 8.412 14.295 55.020 1.00 50.00 H ATOM 3142 CB GLU 354 10.316 15.748 53.523 1.00 50.00 C ATOM 3143 CD GLU 354 12.117 17.373 52.816 1.00 50.00 C ATOM 3144 CG GLU 354 11.677 15.923 52.870 1.00 50.00 C ATOM 3145 OE1 GLU 354 11.319 18.250 53.206 1.00 50.00 O ATOM 3146 OE2 GLU 354 13.259 17.631 52.382 1.00 50.00 O ATOM 3147 N LEU 355 11.518 12.612 53.542 1.00 50.00 N ATOM 3148 CA LEU 355 12.530 11.763 54.100 1.00 50.00 C ATOM 3149 C LEU 355 13.665 11.792 53.120 1.00 50.00 C ATOM 3150 O LEU 355 13.446 12.014 51.931 1.00 50.00 O ATOM 3151 H LEU 355 11.374 12.617 52.654 1.00 50.00 H ATOM 3152 CB LEU 355 11.979 10.354 54.335 1.00 50.00 C ATOM 3153 CG LEU 355 10.838 10.234 55.347 1.00 50.00 C ATOM 3154 CD1 LEU 355 10.251 8.831 55.330 1.00 50.00 C ATOM 3155 CD2 LEU 355 11.320 10.588 56.746 1.00 50.00 C ATOM 3156 N GLY 356 14.912 11.591 53.594 1.00 50.00 N ATOM 3157 CA GLY 356 16.037 11.557 52.695 1.00 50.00 C ATOM 3158 C GLY 356 16.659 12.919 52.645 1.00 50.00 C ATOM 3159 O GLY 356 16.021 13.903 53.010 1.00 50.00 O ATOM 3160 H GLY 356 15.039 11.476 54.478 1.00 50.00 H ATOM 3161 N ASN 357 17.921 13.016 52.160 1.00 50.00 N ATOM 3162 CA ASN 357 18.586 14.289 52.200 1.00 50.00 C ATOM 3163 C ASN 357 19.196 14.641 50.876 1.00 50.00 C ATOM 3164 O ASN 357 19.565 13.781 50.077 1.00 50.00 O ATOM 3165 H ASN 357 18.343 12.298 51.817 1.00 50.00 H ATOM 3166 CB ASN 357 19.655 14.302 53.295 1.00 50.00 C ATOM 3167 CG ASN 357 19.065 14.167 54.685 1.00 50.00 C ATOM 3168 OD1 ASN 357 18.573 15.138 55.259 1.00 50.00 O ATOM 3169 HD21 ASN 357 18.778 12.823 56.056 1.00 50.00 H ATOM 3170 HD22 ASN 357 19.484 12.273 54.779 1.00 50.00 H ATOM 3171 ND2 ASN 357 19.114 12.957 55.231 1.00 50.00 N ATOM 3172 N ILE 358 19.309 15.963 50.635 1.00 50.00 N ATOM 3173 CA ILE 358 19.880 16.536 49.451 1.00 50.00 C ATOM 3174 C ILE 358 20.977 17.422 49.954 1.00 50.00 C ATOM 3175 O ILE 358 20.836 18.038 51.008 1.00 50.00 O ATOM 3176 H ILE 358 18.993 16.498 51.286 1.00 50.00 H ATOM 3177 CB ILE 358 18.822 17.284 48.619 1.00 50.00 C ATOM 3178 CD1 ILE 358 16.531 17.009 47.538 1.00 50.00 C ATOM 3179 CG1 ILE 358 17.728 16.321 48.156 1.00 50.00 C ATOM 3180 CG2 ILE 358 19.476 18.004 47.449 1.00 50.00 C ATOM 3181 N ILE 359 22.114 17.503 49.235 1.00 50.00 N ATOM 3182 CA ILE 359 23.181 18.296 49.772 1.00 50.00 C ATOM 3183 C ILE 359 23.955 19.023 48.709 1.00 50.00 C ATOM 3184 O ILE 359 23.733 18.846 47.510 1.00 50.00 O ATOM 3185 H ILE 359 22.219 17.082 48.446 1.00 50.00 H ATOM 3186 CB ILE 359 24.156 17.442 50.604 1.00 50.00 C ATOM 3187 CD1 ILE 359 25.923 15.614 50.414 1.00 50.00 C ATOM 3188 CG1 ILE 359 24.805 16.369 49.728 1.00 50.00 C ATOM 3189 CG2 ILE 359 23.445 16.840 51.805 1.00 50.00 C ATOM 3190 N VAL 360 24.898 19.867 49.179 1.00 50.00 N ATOM 3191 CA VAL 360 25.830 20.683 48.441 1.00 50.00 C ATOM 3192 C VAL 360 25.149 21.815 47.700 1.00 50.00 C ATOM 3193 O VAL 360 25.596 22.274 46.652 1.00 50.00 O ATOM 3194 H VAL 360 24.901 19.883 50.079 1.00 50.00 H ATOM 3195 CB VAL 360 26.642 19.844 47.437 1.00 50.00 C ATOM 3196 CG1 VAL 360 27.594 20.731 46.648 1.00 50.00 C ATOM 3197 CG2 VAL 360 27.409 18.745 48.159 1.00 50.00 C ATOM 3198 N ALA 361 24.045 22.349 48.252 1.00 50.00 N ATOM 3199 CA ALA 361 23.508 23.533 47.640 1.00 50.00 C ATOM 3200 C ALA 361 24.142 24.672 48.382 1.00 50.00 C ATOM 3201 O ALA 361 24.041 24.760 49.603 1.00 50.00 O ATOM 3202 H ALA 361 23.644 21.995 48.975 1.00 50.00 H ATOM 3203 CB ALA 361 21.990 23.531 47.722 1.00 50.00 C ATOM 3204 N TRP 362 24.868 25.556 47.668 1.00 50.00 N ATOM 3205 CA TRP 362 25.514 26.637 48.359 1.00 50.00 C ATOM 3206 C TRP 362 24.498 27.619 48.842 1.00 50.00 C ATOM 3207 O TRP 362 24.599 28.119 49.960 1.00 50.00 O ATOM 3208 H TRP 362 24.951 25.479 46.775 1.00 50.00 H ATOM 3209 CB TRP 362 26.534 27.322 47.447 1.00 50.00 C ATOM 3210 HB2 TRP 362 26.077 27.984 46.796 1.00 50.00 H ATOM 3211 HB3 TRP 362 27.355 26.791 47.236 1.00 50.00 H ATOM 3212 CG TRP 362 27.272 28.444 48.110 1.00 50.00 C ATOM 3213 CD1 TRP 362 28.407 28.345 48.862 1.00 50.00 C ATOM 3214 HE1 TRP 362 29.543 29.762 49.838 1.00 50.00 H ATOM 3215 NE1 TRP 362 28.792 29.589 49.304 1.00 50.00 N ATOM 3216 CD2 TRP 362 26.929 29.834 48.080 1.00 50.00 C ATOM 3217 CE2 TRP 362 27.898 30.519 48.835 1.00 50.00 C ATOM 3218 CH2 TRP 362 26.845 32.592 48.425 1.00 50.00 C ATOM 3219 CZ2 TRP 362 27.866 31.901 49.014 1.00 50.00 C ATOM 3220 CE3 TRP 362 25.896 30.566 47.487 1.00 50.00 C ATOM 3221 CZ3 TRP 362 25.868 31.937 47.668 1.00 50.00 C ATOM 3222 N ASN 363 23.490 27.926 48.000 1.00 50.00 N ATOM 3223 CA ASN 363 22.495 28.900 48.349 1.00 50.00 C ATOM 3224 C ASN 363 21.578 28.278 49.348 1.00 50.00 C ATOM 3225 O ASN 363 21.321 27.077 49.321 1.00 50.00 O ATOM 3226 H ASN 363 23.449 27.506 47.205 1.00 50.00 H ATOM 3227 CB ASN 363 21.756 29.382 47.099 1.00 50.00 C ATOM 3228 CG ASN 363 22.635 30.215 46.186 1.00 50.00 C ATOM 3229 OD1 ASN 363 23.193 31.230 46.603 1.00 50.00 O ATOM 3230 HD21 ASN 363 23.270 30.244 44.353 1.00 50.00 H ATOM 3231 HD22 ASN 363 22.334 29.039 44.671 1.00 50.00 H ATOM 3232 ND2 ASN 363 22.760 29.786 44.935 1.00 50.00 N ATOM 3233 N PRO 364 21.086 29.077 50.252 1.00 50.00 N ATOM 3234 CA PRO 364 20.190 28.576 51.249 1.00 50.00 C ATOM 3235 C PRO 364 18.879 28.238 50.623 1.00 50.00 C ATOM 3236 O PRO 364 18.438 28.956 49.728 1.00 50.00 O ATOM 3237 CB PRO 364 20.070 29.726 52.250 1.00 50.00 C ATOM 3238 CD PRO 364 21.394 30.533 50.427 1.00 50.00 C ATOM 3239 CG PRO 364 20.378 30.950 51.454 1.00 50.00 C ATOM 3240 N ASN 365 18.238 27.152 51.091 1.00 50.00 N ATOM 3241 CA ASN 365 16.975 26.748 50.545 1.00 50.00 C ATOM 3242 C ASN 365 15.963 27.734 51.017 1.00 50.00 C ATOM 3243 O ASN 365 16.158 28.401 52.031 1.00 50.00 O ATOM 3244 H ASN 365 18.612 26.676 51.756 1.00 50.00 H ATOM 3245 CB ASN 365 16.646 25.313 50.961 1.00 50.00 C ATOM 3246 CG ASN 365 16.439 25.173 52.456 1.00 50.00 C ATOM 3247 OD1 ASN 365 16.011 26.115 53.124 1.00 50.00 O ATOM 3248 HD21 ASN 365 16.638 23.857 53.869 1.00 50.00 H ATOM 3249 HD22 ASN 365 17.052 23.331 52.462 1.00 50.00 H ATOM 3250 ND2 ASN 365 16.742 23.994 52.986 1.00 50.00 N ATOM 3251 N LEU 366 14.861 27.869 50.258 1.00 50.00 N ATOM 3252 CA LEU 366 13.808 28.735 50.692 1.00 50.00 C ATOM 3253 C LEU 366 12.540 27.952 50.534 1.00 50.00 C ATOM 3254 O LEU 366 12.205 27.519 49.432 1.00 50.00 O ATOM 3255 H LEU 366 14.782 27.418 49.482 1.00 50.00 H ATOM 3256 CB LEU 366 13.811 30.031 49.879 1.00 50.00 C ATOM 3257 CG LEU 366 12.695 31.029 50.193 1.00 50.00 C ATOM 3258 CD1 LEU 366 12.820 31.546 51.618 1.00 50.00 C ATOM 3259 CD2 LEU 366 12.717 32.188 49.206 1.00 50.00 C ATOM 3260 N TRP 367 11.806 27.714 51.643 1.00 50.00 N ATOM 3261 CA TRP 367 10.550 27.034 51.498 1.00 50.00 C ATOM 3262 C TRP 367 9.680 27.471 52.631 1.00 50.00 C ATOM 3263 O TRP 367 10.167 27.754 53.724 1.00 50.00 O ATOM 3264 H TRP 367 12.088 27.970 52.458 1.00 50.00 H ATOM 3265 CB TRP 367 10.760 25.519 51.481 1.00 50.00 C ATOM 3266 HB2 TRP 367 10.849 25.137 52.440 1.00 50.00 H ATOM 3267 HB3 TRP 367 11.228 25.153 50.678 1.00 50.00 H ATOM 3268 CG TRP 367 9.497 24.741 51.262 1.00 50.00 C ATOM 3269 CD1 TRP 367 8.264 25.247 50.972 1.00 50.00 C ATOM 3270 HE1 TRP 367 6.443 24.340 50.642 1.00 50.00 H ATOM 3271 NE1 TRP 367 7.352 24.227 50.841 1.00 50.00 N ATOM 3272 CD2 TRP 367 9.347 23.318 51.314 1.00 50.00 C ATOM 3273 CE2 TRP 367 7.996 23.032 51.046 1.00 50.00 C ATOM 3274 CH2 TRP 367 8.377 20.712 51.264 1.00 50.00 C ATOM 3275 CZ2 TRP 367 7.499 21.730 51.019 1.00 50.00 C ATOM 3276 CE3 TRP 367 10.224 22.256 51.561 1.00 50.00 C ATOM 3277 CZ3 TRP 367 9.726 20.968 51.533 1.00 50.00 C ATOM 3278 N LYS 368 8.356 27.579 52.398 1.00 50.00 N ATOM 3279 CA LYS 368 7.531 27.972 53.496 1.00 50.00 C ATOM 3280 C LYS 368 6.480 26.929 53.719 1.00 50.00 C ATOM 3281 O LYS 368 5.321 27.254 53.967 1.00 50.00 O ATOM 3282 H LYS 368 7.988 27.414 51.594 1.00 50.00 H ATOM 3283 CB LYS 368 6.902 29.341 53.229 1.00 50.00 C ATOM 3284 CD LYS 368 7.212 31.812 52.920 1.00 50.00 C ATOM 3285 CE LYS 368 8.218 32.946 52.805 1.00 50.00 C ATOM 3286 CG LYS 368 7.907 30.473 53.106 1.00 50.00 C ATOM 3287 HZ1 LYS 368 8.167 34.899 52.531 1.00 50.00 H ATOM 3288 HZ2 LYS 368 7.013 34.434 53.281 1.00 50.00 H ATOM 3289 HZ3 LYS 368 7.073 34.234 51.843 1.00 50.00 H ATOM 3290 NZ LYS 368 7.551 34.260 52.593 1.00 50.00 N ATOM 3291 N LYS 369 6.864 25.638 53.655 1.00 50.00 N ATOM 3292 CA LYS 369 5.937 24.580 53.931 1.00 50.00 C ATOM 3293 C LYS 369 6.749 23.349 54.166 1.00 50.00 C ATOM 3294 O LYS 369 7.742 23.121 53.477 1.00 50.00 O ATOM 3295 H LYS 369 7.716 25.445 53.436 1.00 50.00 H ATOM 3296 CB LYS 369 4.951 24.416 52.772 1.00 50.00 C ATOM 3297 CD LYS 369 2.885 23.720 54.013 1.00 50.00 C ATOM 3298 CE LYS 369 1.838 22.632 54.197 1.00 50.00 C ATOM 3299 CG LYS 369 3.924 23.316 52.981 1.00 50.00 C ATOM 3300 HZ1 LYS 369 0.250 22.334 55.330 1.00 50.00 H ATOM 3301 HZ2 LYS 369 0.428 23.742 55.021 1.00 50.00 H ATOM 3302 HZ3 LYS 369 1.264 23.107 56.026 1.00 50.00 H ATOM 3303 NZ LYS 369 0.845 22.989 55.248 1.00 50.00 N ATOM 3304 N GLY 370 6.360 22.513 55.151 1.00 50.00 N ATOM 3305 CA GLY 370 5.239 22.785 55.997 1.00 50.00 C ATOM 3306 C GLY 370 5.574 23.998 56.796 1.00 50.00 C ATOM 3307 O GLY 370 4.718 24.842 57.055 1.00 50.00 O ATOM 3308 H GLY 370 6.838 21.759 55.265 1.00 50.00 H ATOM 3309 N THR 371 6.841 24.093 57.240 1.00 50.00 N ATOM 3310 CA THR 371 7.254 25.231 58.000 1.00 50.00 C ATOM 3311 C THR 371 8.159 26.068 57.154 1.00 50.00 C ATOM 3312 O THR 371 8.328 25.829 55.959 1.00 50.00 O ATOM 3313 H THR 371 7.429 23.436 57.057 1.00 50.00 H ATOM 3314 CB THR 371 7.960 24.814 59.304 1.00 50.00 C ATOM 3315 HG1 THR 371 9.026 23.469 58.538 1.00 50.00 H ATOM 3316 OG1 THR 371 9.188 24.145 58.993 1.00 50.00 O ATOM 3317 CG2 THR 371 7.080 23.867 60.106 1.00 50.00 C ATOM 3318 N ASN 372 8.741 27.104 57.784 1.00 50.00 N ATOM 3319 CA ASN 372 9.636 28.027 57.156 1.00 50.00 C ATOM 3320 C ASN 372 10.914 27.336 56.806 1.00 50.00 C ATOM 3321 O ASN 372 11.573 27.698 55.836 1.00 50.00 O ATOM 3322 H ASN 372 8.535 27.198 58.655 1.00 50.00 H ATOM 3323 CB ASN 372 9.886 29.233 58.064 1.00 50.00 C ATOM 3324 CG ASN 372 8.694 30.167 58.134 1.00 50.00 C ATOM 3325 OD1 ASN 372 7.845 30.173 57.244 1.00 50.00 O ATOM 3326 HD21 ASN 372 7.940 31.534 59.288 1.00 50.00 H ATOM 3327 HD22 ASN 372 9.270 30.924 59.827 1.00 50.00 H ATOM 3328 ND2 ASN 372 8.628 30.960 59.197 1.00 50.00 N ATOM 3329 N GLY 373 11.333 26.342 57.609 1.00 50.00 N ATOM 3330 CA GLY 373 12.584 25.708 57.308 1.00 50.00 C ATOM 3331 C GLY 373 12.366 24.553 56.383 1.00 50.00 C ATOM 3332 O GLY 373 11.254 24.050 56.233 1.00 50.00 O ATOM 3333 H GLY 373 10.850 26.072 58.319 1.00 50.00 H ATOM 3334 N TYR 374 13.461 24.115 55.725 1.00 50.00 N ATOM 3335 CA TYR 374 13.459 22.967 54.865 1.00 50.00 C ATOM 3336 C TYR 374 14.652 22.168 55.268 1.00 50.00 C ATOM 3337 O TYR 374 15.616 22.720 55.797 1.00 50.00 O ATOM 3338 H TYR 374 14.219 24.584 55.848 1.00 50.00 H ATOM 3339 CB TYR 374 13.494 23.397 53.398 1.00 50.00 C ATOM 3340 CG TYR 374 13.492 22.242 52.421 1.00 50.00 C ATOM 3341 HH TYR 374 14.239 18.943 49.449 1.00 50.00 H ATOM 3342 OH TYR 374 13.470 19.066 49.738 1.00 50.00 O ATOM 3343 CZ TYR 374 13.479 20.117 50.625 1.00 50.00 C ATOM 3344 CD1 TYR 374 12.317 21.562 52.127 1.00 50.00 C ATOM 3345 CE1 TYR 374 12.306 20.506 51.235 1.00 50.00 C ATOM 3346 CD2 TYR 374 14.664 21.837 51.797 1.00 50.00 C ATOM 3347 CE2 TYR 374 14.672 20.783 50.903 1.00 50.00 C ATOM 3348 N PRO 375 14.618 20.876 55.108 1.00 50.00 N ATOM 3349 CA PRO 375 15.803 20.161 55.469 1.00 50.00 C ATOM 3350 C PRO 375 16.882 20.417 54.475 1.00 50.00 C ATOM 3351 O PRO 375 16.993 19.645 53.527 1.00 50.00 O ATOM 3352 CB PRO 375 15.365 18.694 55.470 1.00 50.00 C ATOM 3353 CD PRO 375 13.401 19.965 54.964 1.00 50.00 C ATOM 3354 CG PRO 375 13.891 18.746 55.692 1.00 50.00 C ATOM 3355 N ILE 376 17.734 21.432 54.711 1.00 50.00 N ATOM 3356 CA ILE 376 18.786 21.748 53.787 1.00 50.00 C ATOM 3357 C ILE 376 20.003 21.950 54.600 1.00 50.00 C ATOM 3358 O ILE 376 19.900 22.546 55.663 1.00 50.00 O ATOM 3359 H ILE 376 17.635 21.916 55.464 1.00 50.00 H ATOM 3360 CB ILE 376 18.436 22.982 52.934 1.00 50.00 C ATOM 3361 CD1 ILE 376 19.096 24.194 50.791 1.00 50.00 C ATOM 3362 CG1 ILE 376 19.509 23.216 51.869 1.00 50.00 C ATOM 3363 CG2 ILE 376 18.240 24.203 53.819 1.00 50.00 C ATOM 3364 N PHE 377 21.176 21.489 54.108 1.00 50.00 N ATOM 3365 CA PHE 377 22.408 21.589 54.838 1.00 50.00 C ATOM 3366 C PHE 377 22.569 22.980 55.355 1.00 50.00 C ATOM 3367 O PHE 377 22.728 23.943 54.607 1.00 50.00 O ATOM 3368 H PHE 377 21.166 21.107 53.292 1.00 50.00 H ATOM 3369 CB PHE 377 23.591 21.195 53.951 1.00 50.00 C ATOM 3370 CG PHE 377 24.915 21.222 54.659 1.00 50.00 C ATOM 3371 CZ PHE 377 27.368 21.276 55.967 1.00 50.00 C ATOM 3372 CD1 PHE 377 25.283 20.192 55.508 1.00 50.00 C ATOM 3373 CE1 PHE 377 26.501 20.216 56.159 1.00 50.00 C ATOM 3374 CD2 PHE 377 25.793 22.275 54.477 1.00 50.00 C ATOM 3375 CE2 PHE 377 27.011 22.299 55.128 1.00 50.00 C ATOM 3376 N GLN 378 22.504 23.085 56.694 1.00 50.00 N ATOM 3377 CA GLN 378 22.621 24.312 57.417 1.00 50.00 C ATOM 3378 C GLN 378 22.016 23.995 58.743 1.00 50.00 C ATOM 3379 O GLN 378 21.570 22.870 58.965 1.00 50.00 O ATOM 3380 H GLN 378 22.378 22.312 57.138 1.00 50.00 H ATOM 3381 CB GLN 378 21.917 25.445 56.667 1.00 50.00 C ATOM 3382 CD GLN 378 23.449 27.322 57.382 1.00 50.00 C ATOM 3383 CG GLN 378 22.026 26.801 57.346 1.00 50.00 C ATOM 3384 OE1 GLN 378 24.107 27.428 56.348 1.00 50.00 O ATOM 3385 HE21 GLN 378 24.767 27.965 58.654 1.00 50.00 H ATOM 3386 HE22 GLN 378 23.413 27.557 59.309 1.00 50.00 H ATOM 3387 NE2 GLN 378 23.928 27.650 58.577 1.00 50.00 N ATOM 3388 N TRP 379 21.987 24.959 59.680 1.00 50.00 N ATOM 3389 CA TRP 379 21.371 24.615 60.923 1.00 50.00 C ATOM 3390 C TRP 379 19.927 24.383 60.625 1.00 50.00 C ATOM 3391 O TRP 379 19.274 25.200 59.976 1.00 50.00 O ATOM 3392 H TRP 379 22.327 25.784 59.561 1.00 50.00 H ATOM 3393 CB TRP 379 21.588 25.723 61.954 1.00 50.00 C ATOM 3394 HB2 TRP 379 21.298 25.423 62.902 1.00 50.00 H ATOM 3395 HB3 TRP 379 21.520 26.659 61.608 1.00 50.00 H ATOM 3396 CG TRP 379 23.011 25.855 62.403 1.00 50.00 C ATOM 3397 CD1 TRP 379 23.910 26.804 62.011 1.00 50.00 C ATOM 3398 HE1 TRP 379 25.881 27.132 62.518 1.00 50.00 H ATOM 3399 NE1 TRP 379 25.117 26.601 62.637 1.00 50.00 N ATOM 3400 CD2 TRP 379 23.700 25.007 63.330 1.00 50.00 C ATOM 3401 CE2 TRP 379 25.011 25.503 63.452 1.00 50.00 C ATOM 3402 CH2 TRP 379 25.577 23.806 64.993 1.00 50.00 C ATOM 3403 CZ2 TRP 379 25.960 24.909 64.283 1.00 50.00 C ATOM 3404 CE3 TRP 379 23.336 23.878 64.069 1.00 50.00 C ATOM 3405 CZ3 TRP 379 24.280 23.292 64.891 1.00 50.00 C ATOM 3406 N SER 380 19.399 23.230 61.080 1.00 50.00 N ATOM 3407 CA SER 380 18.026 22.916 60.830 1.00 50.00 C ATOM 3408 C SER 380 17.213 23.587 61.881 1.00 50.00 C ATOM 3409 O SER 380 17.738 24.045 62.894 1.00 50.00 O ATOM 3410 H SER 380 19.914 22.657 61.544 1.00 50.00 H ATOM 3411 CB SER 380 17.816 21.400 60.824 1.00 50.00 C ATOM 3412 HG SER 380 17.479 21.194 62.647 1.00 50.00 H ATOM 3413 OG SER 380 18.018 20.853 62.116 1.00 50.00 O ATOM 3414 N GLU 381 15.890 23.681 61.648 1.00 50.00 N ATOM 3415 CA GLU 381 15.031 24.284 62.618 1.00 50.00 C ATOM 3416 C GLU 381 14.502 23.154 63.491 1.00 50.00 C ATOM 3417 O GLU 381 13.255 22.982 63.547 1.00 50.00 O ATOM 3418 H GLU 381 15.548 23.363 60.879 1.00 50.00 H ATOM 3419 OXT GLU 381 15.338 22.447 64.115 1.00 50.00 O ATOM 3420 CB GLU 381 13.910 25.065 61.929 1.00 50.00 C ATOM 3421 CD GLU 381 13.256 26.996 60.437 1.00 50.00 C ATOM 3422 CG GLU 381 14.395 26.233 61.086 1.00 50.00 C ATOM 3423 OE1 GLU 381 12.103 26.524 60.519 1.00 50.00 O ATOM 3424 OE2 GLU 381 13.518 28.065 59.847 1.00 50.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 254 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 103.18 26.7 60 100.0 60 ARMSMC SECONDARY STRUCTURE . . 119.87 13.6 22 100.0 22 ARMSMC SURFACE . . . . . . . . 101.44 28.0 50 100.0 50 ARMSMC BURIED . . . . . . . . 111.46 20.0 10 100.0 10 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.02 26.9 26 100.0 26 ARMSSC1 RELIABLE SIDE CHAINS . 101.98 24.0 25 100.0 25 ARMSSC1 SECONDARY STRUCTURE . . 83.23 50.0 8 100.0 8 ARMSSC1 SURFACE . . . . . . . . 102.84 21.7 23 100.0 23 ARMSSC1 BURIED . . . . . . . . 74.94 66.7 3 100.0 3 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.21 50.0 22 100.0 22 ARMSSC2 RELIABLE SIDE CHAINS . 71.08 50.0 16 100.0 16 ARMSSC2 SECONDARY STRUCTURE . . 47.57 71.4 7 100.0 7 ARMSSC2 SURFACE . . . . . . . . 68.37 45.0 20 100.0 20 ARMSSC2 BURIED . . . . . . . . 5.55 100.0 2 100.0 2 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 32.15 83.3 6 100.0 6 ARMSSC3 RELIABLE SIDE CHAINS . 34.07 80.0 5 100.0 5 ARMSSC3 SECONDARY STRUCTURE . . 4.08 100.0 2 100.0 2 ARMSSC3 SURFACE . . . . . . . . 32.15 83.3 6 100.0 6 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 3.34 100.0 2 100.0 2 ARMSSC4 RELIABLE SIDE CHAINS . 3.34 100.0 2 100.0 2 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 3.34 100.0 2 100.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.37 (Number of atoms: 31) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.37 31 100.0 31 CRMSCA CRN = ALL/NP . . . . . 0.2377 CRMSCA SECONDARY STRUCTURE . . 6.21 11 100.0 11 CRMSCA SURFACE . . . . . . . . 7.38 26 100.0 26 CRMSCA BURIED . . . . . . . . 7.32 5 100.0 5 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.45 152 100.0 152 CRMSMC SECONDARY STRUCTURE . . 6.26 54 100.0 54 CRMSMC SURFACE . . . . . . . . 7.48 129 100.0 129 CRMSMC BURIED . . . . . . . . 7.26 23 100.0 23 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.25 130 100.0 130 CRMSSC RELIABLE SIDE CHAINS . 10.42 114 100.0 114 CRMSSC SECONDARY STRUCTURE . . 10.33 41 100.0 41 CRMSSC SURFACE . . . . . . . . 10.24 120 100.0 120 CRMSSC BURIED . . . . . . . . 10.37 10 100.0 10 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.91 254 100.0 254 CRMSALL SECONDARY STRUCTURE . . 8.36 85 100.0 85 CRMSALL SURFACE . . . . . . . . 9.00 224 100.0 224 CRMSALL BURIED . . . . . . . . 8.24 30 100.0 30 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.920 0.754 0.783 31 100.0 31 ERRCA SECONDARY STRUCTURE . . 44.082 0.790 0.812 11 100.0 11 ERRCA SURFACE . . . . . . . . 42.945 0.755 0.783 26 100.0 26 ERRCA BURIED . . . . . . . . 42.792 0.749 0.778 5 100.0 5 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.868 0.753 0.782 152 100.0 152 ERRMC SECONDARY STRUCTURE . . 44.012 0.788 0.810 54 100.0 54 ERRMC SURFACE . . . . . . . . 42.860 0.753 0.782 129 100.0 129 ERRMC BURIED . . . . . . . . 42.913 0.753 0.781 23 100.0 23 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 40.391 0.684 0.730 130 100.0 130 ERRSC RELIABLE SIDE CHAINS . 40.213 0.679 0.726 114 100.0 114 ERRSC SECONDARY STRUCTURE . . 40.422 0.686 0.732 41 100.0 41 ERRSC SURFACE . . . . . . . . 40.398 0.684 0.730 120 100.0 120 ERRSC BURIED . . . . . . . . 40.313 0.682 0.729 10 100.0 10 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 41.670 0.719 0.757 254 100.0 254 ERRALL SECONDARY STRUCTURE . . 42.389 0.742 0.775 85 100.0 85 ERRALL SURFACE . . . . . . . . 41.597 0.717 0.755 224 100.0 224 ERRALL BURIED . . . . . . . . 42.214 0.734 0.767 30 100.0 30 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 8 30 31 31 DISTCA CA (P) 0.00 0.00 0.00 25.81 96.77 31 DISTCA CA (RMS) 0.00 0.00 0.00 4.29 7.18 DISTCA ALL (N) 0 1 5 36 183 254 254 DISTALL ALL (P) 0.00 0.39 1.97 14.17 72.05 254 DISTALL ALL (RMS) 0.00 1.35 2.26 4.05 7.02 DISTALL END of the results output