####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 92 ( 368), selected 92 , name T0536TS328_1-D1 # Molecule2: number of CA atoms 93 ( 736), selected 92 , name T0536-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0536TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 119 - 146 4.82 15.42 LCS_AVERAGE: 26.83 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 120 - 134 1.98 17.61 LCS_AVERAGE: 10.83 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 76 - 85 0.98 21.78 LONGEST_CONTINUOUS_SEGMENT: 10 121 - 130 0.76 15.82 LCS_AVERAGE: 6.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 92 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 33 F 33 4 10 22 3 6 7 8 10 12 14 17 18 19 20 22 26 28 32 34 39 44 47 49 LCS_GDT A 34 A 34 4 10 22 3 4 7 8 10 10 14 17 18 19 25 28 30 32 34 39 42 47 50 53 LCS_GDT L 35 L 35 7 10 22 3 6 7 9 11 12 15 17 18 19 20 25 30 32 34 37 42 45 50 53 LCS_GDT C 36 C 36 7 10 23 3 5 7 9 11 12 15 17 18 19 22 28 30 32 34 39 42 47 50 53 LCS_GDT I 37 I 37 7 10 23 3 5 7 9 11 12 15 17 18 21 26 27 28 31 33 37 40 44 46 49 LCS_GDT V 38 V 38 7 10 23 3 5 7 9 11 12 15 17 18 23 26 30 31 32 33 37 38 41 46 49 LCS_GDT R 39 R 39 7 10 23 3 5 9 13 15 16 18 18 22 24 26 30 31 32 33 36 38 41 46 48 LCS_GDT N 40 N 40 7 10 23 3 5 7 9 11 12 15 17 18 20 21 25 29 33 34 37 39 41 42 45 LCS_GDT D 41 D 41 7 10 23 3 5 7 9 11 13 17 20 22 24 26 29 30 33 34 37 39 41 44 51 LCS_GDT Y 42 Y 42 5 10 23 3 6 8 9 10 13 17 20 22 24 26 29 30 34 36 40 44 50 51 54 LCS_GDT V 43 V 43 5 10 23 4 6 7 8 10 14 17 20 22 24 26 29 30 34 36 40 45 50 51 54 LCS_GDT I 44 I 44 5 10 23 4 4 7 10 13 15 17 21 23 24 26 30 31 34 36 41 45 50 51 54 LCS_GDT V 45 V 45 5 7 23 4 6 7 8 11 13 17 20 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT K 46 K 46 5 7 23 3 6 7 8 11 14 16 20 23 25 29 29 30 34 36 41 45 50 51 54 LCS_GDT V 47 V 47 5 7 25 3 4 5 7 12 14 17 20 23 25 29 29 30 34 36 41 45 50 51 54 LCS_GDT N 48 N 48 5 7 25 3 4 5 6 7 10 17 20 22 24 26 29 30 34 36 40 45 50 51 54 LCS_GDT E 49 E 49 5 7 25 4 4 6 8 11 13 17 20 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT Y 50 Y 50 5 7 25 4 4 6 8 11 13 17 20 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT F 51 F 51 5 7 25 4 4 6 9 11 13 17 20 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT E 52 E 52 5 7 25 4 4 6 8 11 13 17 20 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT S 53 S 53 5 7 25 4 4 6 6 11 13 17 20 22 24 26 29 30 33 35 40 45 50 51 54 LCS_GDT R 54 R 54 5 7 25 4 4 5 6 9 13 17 20 22 24 26 29 30 33 35 40 45 50 51 54 LCS_GDT V 55 V 55 5 7 25 4 4 5 6 9 13 17 20 22 24 26 29 30 33 35 40 45 50 51 54 LCS_GDT I 56 I 56 4 7 25 3 3 6 6 9 13 17 20 22 23 26 29 30 33 35 40 45 50 51 54 LCS_GDT F 57 F 57 4 7 25 3 3 4 6 9 12 15 18 21 22 25 29 30 33 35 41 45 50 51 54 LCS_GDT D 58 D 58 4 7 25 3 3 4 6 9 11 13 15 17 19 22 25 30 32 35 41 45 50 51 54 LCS_GDT T 61 T 61 3 7 25 0 3 6 6 9 11 13 15 17 19 29 29 29 31 35 41 45 50 51 54 LCS_GDT M 62 M 62 3 7 25 3 3 6 6 9 11 13 15 17 19 22 25 26 31 35 41 45 50 51 54 LCS_GDT Q 63 Q 63 3 6 25 3 3 6 6 9 11 13 15 17 19 22 25 26 31 35 40 45 48 51 54 LCS_GDT G 64 G 64 4 6 25 3 4 4 6 9 11 13 15 17 19 22 25 26 31 35 41 45 50 51 54 LCS_GDT K 65 K 65 4 6 25 3 4 4 5 6 8 13 15 17 19 22 25 28 32 35 41 45 50 51 54 LCS_GDT N 66 N 66 4 6 25 3 4 4 6 6 10 13 15 17 19 21 22 26 29 30 36 43 47 51 54 LCS_GDT I 67 I 67 4 6 25 1 4 4 5 9 11 13 15 18 24 25 28 30 31 35 41 45 50 51 54 LCS_GDT L 68 L 68 3 4 25 3 3 4 7 10 11 18 18 20 24 26 30 31 32 35 41 45 50 51 54 LCS_GDT E 69 E 69 3 3 25 3 6 9 13 15 16 18 18 20 22 25 27 31 32 35 41 45 50 51 54 LCS_GDT L 70 L 70 4 4 25 3 4 6 6 12 13 15 18 20 22 25 30 31 34 36 41 45 50 51 54 LCS_GDT F 71 F 71 4 4 25 3 4 4 6 7 11 14 16 18 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT P 72 P 72 4 4 25 3 4 5 6 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT E 73 E 73 4 4 25 3 4 6 8 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT S 74 S 74 3 13 24 3 3 3 7 11 13 15 18 20 22 25 28 30 32 36 41 43 50 51 54 LCS_GDT A 75 A 75 3 13 24 3 3 4 6 11 11 13 17 19 21 25 28 30 34 36 39 42 46 50 54 LCS_GDT D 76 D 76 10 13 24 9 9 10 10 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT Y 77 Y 77 10 13 24 9 9 10 10 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT L 78 L 78 10 13 24 9 9 10 10 11 13 15 18 20 22 25 28 30 34 36 40 45 50 51 54 LCS_GDT K 79 K 79 10 13 24 9 9 10 10 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT R 80 R 80 10 13 24 9 9 10 10 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT K 81 K 81 10 13 24 9 9 10 10 12 13 15 18 20 22 25 28 30 34 36 41 45 50 51 54 LCS_GDT I 82 I 82 10 13 24 9 9 10 10 12 13 15 18 20 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT D 83 D 83 10 13 24 9 9 10 10 12 13 15 19 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT T 84 T 84 10 13 24 9 9 10 10 12 13 15 18 20 22 26 29 30 34 36 41 45 50 51 54 LCS_GDT A 85 A 85 10 13 24 3 3 5 10 11 12 15 18 20 22 26 29 30 34 36 41 45 50 51 54 LCS_GDT L 86 L 86 5 13 24 4 4 10 10 12 13 15 19 22 24 26 29 30 34 36 41 44 50 51 54 LCS_GDT V 87 V 87 5 12 24 4 4 5 6 8 9 11 14 16 21 22 26 30 33 36 39 43 50 51 53 LCS_GDT I 88 I 88 5 8 24 4 4 5 6 8 9 11 14 16 19 24 26 30 34 36 41 44 50 51 54 LCS_GDT E 89 E 89 5 8 24 4 4 5 6 10 12 14 19 22 24 26 29 30 34 36 41 45 50 51 54 LCS_GDT S 90 S 90 5 8 24 3 4 5 6 9 13 17 20 22 24 26 29 30 32 35 41 45 50 51 54 LCS_GDT S 91 S 91 5 8 24 3 4 5 6 8 9 11 14 17 20 24 28 30 33 34 40 45 48 51 54 LCS_GDT S 92 S 92 4 8 24 3 4 5 6 8 9 11 14 16 19 21 26 30 33 35 37 40 44 46 51 LCS_GDT F 93 F 93 3 8 24 3 3 4 6 7 11 12 16 19 22 25 28 30 33 35 37 40 44 46 49 LCS_GDT S 94 S 94 3 8 24 3 3 6 6 7 8 11 14 16 19 20 22 25 31 35 37 40 44 46 49 LCS_GDT S 95 S 95 3 5 24 3 3 6 6 6 7 8 11 14 15 19 22 25 31 35 36 38 42 42 49 LCS_GDT E 116 E 116 4 5 11 3 4 5 5 5 7 8 9 14 15 19 22 25 31 35 36 38 39 41 45 LCS_GDT Q 117 Q 117 4 5 11 3 4 5 5 5 5 10 11 16 17 21 22 25 29 35 36 38 42 42 45 LCS_GDT M 118 M 118 4 5 18 3 4 5 5 5 6 10 12 16 18 21 25 30 33 35 37 39 42 46 49 LCS_GDT Y 119 Y 119 4 5 28 3 4 5 5 5 5 9 12 16 18 21 26 30 33 34 37 39 42 42 45 LCS_GDT Q 120 Q 120 3 15 28 3 3 6 8 14 14 17 19 21 23 25 27 30 33 34 37 39 42 46 49 LCS_GDT N 121 N 121 10 15 28 4 9 10 12 15 16 18 21 23 24 29 30 31 33 35 37 40 44 46 49 LCS_GDT L 122 L 122 10 15 28 4 9 10 13 15 16 18 21 23 24 29 30 31 33 35 40 45 48 51 54 LCS_GDT E 123 E 123 10 15 28 4 9 10 13 15 16 18 21 23 24 29 30 31 34 36 41 45 50 51 54 LCS_GDT V 124 V 124 10 15 28 4 9 10 13 15 16 18 21 23 25 29 30 31 34 36 41 45 50 51 54 LCS_GDT I 125 I 125 10 15 28 3 9 10 13 15 16 18 21 23 25 29 30 31 34 36 41 44 50 51 54 LCS_GDT P 126 P 126 10 15 28 4 9 10 13 15 16 18 21 23 25 29 30 31 32 33 37 40 44 48 51 LCS_GDT I 127 I 127 10 15 28 4 9 10 13 15 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT H 128 H 128 10 15 28 4 9 10 13 15 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT S 129 S 129 10 15 28 4 9 10 13 15 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT E 130 E 130 10 15 28 4 8 10 13 15 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT D 131 D 131 7 15 28 4 6 9 13 15 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT G 132 G 132 7 15 28 3 6 8 13 15 16 18 21 23 25 29 30 31 32 33 37 40 41 43 49 LCS_GDT T 133 T 133 4 15 28 3 5 5 9 13 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT I 134 I 134 4 15 28 3 5 7 12 15 16 18 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT E 135 E 135 5 13 28 3 5 6 9 13 14 16 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT H 136 H 136 5 13 28 3 5 6 9 13 14 17 21 23 25 29 30 31 32 33 37 40 44 48 49 LCS_GDT V 137 V 137 6 13 28 4 5 6 10 13 14 17 21 23 25 29 30 31 33 35 41 44 50 51 54 LCS_GDT C 138 C 138 6 13 28 4 5 6 10 13 14 17 21 23 25 29 30 31 34 36 41 45 50 51 54 LCS_GDT L 139 L 139 7 13 28 4 5 7 10 13 14 17 21 23 25 29 30 31 34 36 41 45 50 51 54 LCS_GDT C 140 C 140 7 13 28 4 6 7 10 13 15 18 21 23 25 29 30 31 33 35 37 43 48 50 54 LCS_GDT V 141 V 141 7 13 28 4 6 7 10 13 14 17 21 23 25 29 30 31 32 35 37 40 44 46 49 LCS_GDT Y 142 Y 142 7 13 28 3 6 7 10 13 14 16 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT D 143 D 143 7 13 28 4 6 7 10 13 14 16 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT V 144 V 144 7 13 28 4 6 7 10 13 14 16 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_GDT T 145 T 145 7 13 28 4 6 7 10 13 14 16 21 23 25 29 29 31 32 33 37 40 44 46 49 LCS_GDT I 146 I 146 4 12 28 3 3 4 10 11 12 16 21 23 25 29 30 31 32 33 37 40 44 46 49 LCS_AVERAGE LCS_A: 14.70 ( 6.44 10.83 26.83 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 9 10 13 15 16 18 21 23 25 29 30 31 34 36 41 45 50 51 54 GDT PERCENT_AT 9.68 9.68 10.75 13.98 16.13 17.20 19.35 22.58 24.73 26.88 31.18 32.26 33.33 36.56 38.71 44.09 48.39 53.76 54.84 58.06 GDT RMS_LOCAL 0.22 0.22 0.76 1.34 1.52 1.69 2.15 2.82 3.15 3.61 3.99 4.30 4.46 7.27 7.27 6.09 6.34 6.56 6.64 6.91 GDT RMS_ALL_AT 21.55 21.55 15.82 18.04 17.96 17.92 17.70 16.60 16.34 15.55 15.56 16.73 16.91 16.99 16.99 16.91 16.56 16.80 16.80 16.70 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 33 F 33 31.183 7 0.110 0.110 33.183 0.000 0.000 LGA A 34 A 34 24.660 1 0.113 0.113 27.140 0.000 0.000 LGA L 35 L 35 19.072 4 0.578 0.578 20.902 0.000 0.000 LGA C 36 C 36 12.387 2 0.094 0.094 14.888 0.000 0.000 LGA I 37 I 37 9.287 4 0.082 0.082 10.318 8.214 4.107 LGA V 38 V 38 6.010 3 0.118 0.118 7.300 14.643 8.367 LGA R 39 R 39 6.039 7 0.107 0.107 9.331 13.214 4.805 LGA N 40 N 40 12.998 4 0.643 0.643 15.562 0.000 0.000 LGA D 41 D 41 16.289 4 0.101 0.101 16.505 0.000 0.000 LGA Y 42 Y 42 11.977 8 0.664 0.664 13.072 0.119 0.040 LGA V 43 V 43 8.757 3 0.033 0.033 9.961 9.405 5.374 LGA I 44 I 44 2.187 4 0.084 0.084 4.943 42.619 21.310 LGA V 45 V 45 8.297 3 0.607 0.607 10.926 6.905 3.946 LGA K 46 K 46 11.747 5 0.146 0.146 12.253 0.119 0.053 LGA V 47 V 47 13.979 3 0.098 0.098 17.924 0.000 0.000 LGA N 48 N 48 20.051 4 0.618 0.618 20.995 0.000 0.000 LGA E 49 E 49 22.879 5 0.330 0.330 23.920 0.000 0.000 LGA Y 50 Y 50 23.208 8 0.063 0.063 23.411 0.000 0.000 LGA F 51 F 51 19.281 7 0.282 0.282 20.223 0.000 0.000 LGA E 52 E 52 21.188 5 0.181 0.181 23.835 0.000 0.000 LGA S 53 S 53 25.861 2 0.076 0.076 27.745 0.000 0.000 LGA R 54 R 54 24.990 7 0.219 0.219 25.281 0.000 0.000 LGA V 55 V 55 23.383 3 0.614 0.614 25.078 0.000 0.000 LGA I 56 I 56 22.981 4 0.326 0.326 25.268 0.000 0.000 LGA F 57 F 57 21.971 7 0.355 0.355 23.250 0.000 0.000 LGA D 58 D 58 26.198 4 0.700 0.700 26.455 0.000 0.000 LGA T 61 T 61 20.380 3 0.637 0.637 22.405 0.000 0.000 LGA M 62 M 62 15.808 4 0.651 0.651 17.743 0.000 0.000 LGA Q 63 Q 63 18.013 5 0.165 0.165 18.013 0.000 0.000 LGA G 64 G 64 15.906 0 0.657 0.657 16.867 0.000 0.000 LGA K 65 K 65 11.499 5 0.018 0.018 12.713 0.000 0.000 LGA N 66 N 66 10.912 4 0.591 0.591 11.222 4.524 2.262 LGA I 67 I 67 5.715 4 0.618 0.618 7.932 16.786 8.393 LGA L 68 L 68 7.991 4 0.640 0.640 8.254 8.452 4.226 LGA E 69 E 69 9.532 5 0.613 0.613 10.772 0.952 0.423 LGA L 70 L 70 9.552 4 0.627 0.627 12.294 0.833 0.417 LGA F 71 F 71 15.738 7 0.349 0.349 18.825 0.000 0.000 LGA P 72 P 72 20.951 3 0.609 0.609 24.239 0.000 0.000 LGA E 73 E 73 27.496 5 0.661 0.661 28.383 0.000 0.000 LGA S 74 S 74 27.954 2 0.678 0.678 27.954 0.000 0.000 LGA A 75 A 75 28.720 1 0.602 0.602 28.720 0.000 0.000 LGA D 76 D 76 29.789 4 0.338 0.338 29.982 0.000 0.000 LGA Y 77 Y 77 29.230 8 0.064 0.064 29.522 0.000 0.000 LGA L 78 L 78 22.407 4 0.072 0.072 25.007 0.000 0.000 LGA K 79 K 79 21.418 5 0.075 0.075 22.427 0.000 0.000 LGA R 80 R 80 25.661 7 0.044 0.044 25.661 0.000 0.000 LGA K 81 K 81 21.457 5 0.080 0.080 22.974 0.000 0.000 LGA I 82 I 82 15.731 4 0.069 0.069 17.934 0.000 0.000 LGA D 83 D 83 20.198 4 0.025 0.025 21.196 0.000 0.000 LGA T 84 T 84 21.985 3 0.304 0.304 21.985 0.000 0.000 LGA A 85 A 85 18.453 1 0.581 0.581 19.341 0.000 0.000 LGA L 86 L 86 18.730 4 0.637 0.637 21.237 0.000 0.000 LGA V 87 V 87 19.503 3 0.009 0.009 20.922 0.000 0.000 LGA I 88 I 88 19.261 4 0.266 0.266 20.050 0.000 0.000 LGA E 89 E 89 21.258 5 0.171 0.171 21.805 0.000 0.000 LGA S 90 S 90 19.283 2 0.019 0.019 19.467 0.000 0.000 LGA S 91 S 91 18.001 2 0.029 0.029 19.967 0.000 0.000 LGA S 92 S 92 20.016 2 0.516 0.516 20.016 0.000 0.000 LGA F 93 F 93 15.492 7 0.142 0.142 18.421 0.000 0.000 LGA S 94 S 94 17.013 2 0.062 0.062 17.013 0.000 0.000 LGA S 95 S 95 15.264 2 0.102 0.102 17.170 0.000 0.000 LGA E 116 E 116 28.358 5 0.322 0.322 30.210 0.000 0.000 LGA Q 117 Q 117 21.945 5 0.050 0.050 24.250 0.000 0.000 LGA M 118 M 118 18.908 4 0.526 0.526 19.856 0.000 0.000 LGA Y 119 Y 119 11.643 8 0.139 0.139 14.144 0.238 0.079 LGA Q 120 Q 120 5.359 5 0.090 0.090 7.375 30.714 13.651 LGA N 121 N 121 2.913 4 0.639 0.639 3.227 53.571 26.786 LGA L 122 L 122 2.357 4 0.051 0.051 2.373 66.786 33.393 LGA E 123 E 123 2.137 5 0.066 0.066 2.689 62.857 27.937 LGA V 124 V 124 2.580 3 0.051 0.051 2.580 62.857 35.918 LGA I 125 I 125 1.740 4 0.060 0.060 2.137 70.833 35.417 LGA P 126 P 126 2.290 3 0.126 0.126 2.408 66.786 38.163 LGA I 127 I 127 2.319 4 0.072 0.072 2.881 60.952 30.476 LGA H 128 H 128 2.653 6 0.042 0.042 2.653 59.048 23.619 LGA S 129 S 129 2.516 2 0.035 0.035 2.614 60.952 40.635 LGA E 130 E 130 2.515 5 0.082 0.082 2.655 59.048 26.243 LGA D 131 D 131 1.492 4 0.059 0.059 3.043 69.405 34.702 LGA G 132 G 132 3.181 0 0.569 0.569 3.181 61.190 61.190 LGA T 133 T 133 1.706 3 0.018 0.018 2.256 75.119 42.925 LGA I 134 I 134 1.511 4 0.090 0.090 4.656 56.548 28.274 LGA E 135 E 135 5.816 5 0.641 0.641 5.816 29.286 13.016 LGA H 136 H 136 4.204 6 0.122 0.122 4.853 34.286 13.714 LGA V 137 V 137 4.418 3 0.097 0.097 4.418 37.143 21.224 LGA C 138 C 138 3.802 2 0.052 0.052 4.187 41.786 27.857 LGA L 139 L 139 3.559 4 0.020 0.020 3.648 50.238 25.119 LGA C 140 C 140 2.400 2 0.050 0.050 4.114 52.262 34.841 LGA V 141 V 141 4.037 3 0.059 0.059 4.355 43.690 24.966 LGA Y 142 Y 142 6.195 8 0.189 0.189 7.532 15.119 5.040 LGA D 143 D 143 8.603 4 0.024 0.024 10.790 2.500 1.250 LGA V 144 V 144 12.559 3 0.033 0.033 12.806 0.000 0.000 LGA T 145 T 145 14.196 3 0.021 0.021 14.431 0.000 0.000 LGA I 146 I 146 14.645 4 0.100 0.100 14.821 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 92 368 368 100.00 731 368 50.34 93 SUMMARY(RMSD_GDC): 13.865 13.730 13.730 14.516 7.851 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 92 93 4.0 21 2.82 22.581 19.356 0.719 LGA_LOCAL RMSD: 2.823 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.605 Number of assigned atoms: 92 Std_ASGN_ATOMS RMSD: 13.865 Standard rmsd on all 92 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.865654 * X + -0.228131 * Y + -0.445644 * Z + 50.617390 Y_new = -0.500620 * X + 0.386121 * Y + 0.774784 * Z + 77.892990 Z_new = -0.004680 * X + 0.893793 * Y + -0.448454 * Z + 31.279503 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.617271 0.004680 2.035837 [DEG: -149.9586 0.2681 116.6449 ] ZXZ: -2.619619 2.035832 -0.005236 [DEG: -150.0931 116.6446 -0.3000 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0536TS328_1-D1 REMARK 2: T0536-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0536TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 92 93 4.0 21 2.82 19.356 13.87 REMARK ---------------------------------------------------------- MOLECULE T0536TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0536 REMARK MODEL 1 REMARK PARENT 3frn_A ATOM 97 N PHE 33 26.195 96.101 6.423 1.00 3.00 N ATOM 98 CA PHE 33 26.310 94.702 6.020 1.00 3.00 C ATOM 99 C PHE 33 26.095 93.738 7.186 1.00 3.00 C ATOM 100 O PHE 33 26.563 93.971 8.307 1.00 3.00 O ATOM 101 N ALA 34 25.360 92.667 6.897 1.00 3.00 N ATOM 102 CA ALA 34 25.021 91.631 7.870 1.00 3.00 C ATOM 103 C ALA 34 26.241 90.779 8.202 1.00 3.00 C ATOM 104 O ALA 34 26.835 90.154 7.325 1.00 3.00 O ATOM 105 N LEU 35 26.617 90.781 9.476 1.00 3.00 N ATOM 106 CA LEU 35 27.764 90.017 9.937 1.00 3.00 C ATOM 107 C LEU 35 27.319 88.646 10.435 1.00 3.00 C ATOM 108 O LEU 35 27.852 87.621 10.012 1.00 3.00 O ATOM 109 N CYS 36 26.341 88.641 11.340 1.00 3.00 N ATOM 110 CA CYS 36 25.785 87.409 11.899 1.00 3.00 C ATOM 111 C CYS 36 24.274 87.547 12.053 1.00 3.00 C ATOM 112 O CYS 36 23.762 88.658 12.200 1.00 3.00 O ATOM 113 N ILE 37 23.576 86.414 11.997 1.00 3.00 N ATOM 114 CA ILE 37 22.152 86.336 12.325 1.00 3.00 C ATOM 115 C ILE 37 22.055 85.920 13.782 1.00 3.00 C ATOM 116 O ILE 37 22.415 84.806 14.124 1.00 3.00 O ATOM 117 N VAL 38 21.569 86.813 14.635 1.00 3.00 N ATOM 118 CA VAL 38 21.561 86.573 16.068 1.00 3.00 C ATOM 119 C VAL 38 20.251 85.913 16.524 1.00 3.00 C ATOM 120 O VAL 38 19.184 86.503 16.398 1.00 3.00 O ATOM 121 N ARG 39 20.326 84.680 17.034 1.00 3.00 N ATOM 122 CA ARG 39 19.113 83.934 17.417 1.00 3.00 C ATOM 123 C ARG 39 19.019 83.776 18.922 1.00 3.00 C ATOM 124 O ARG 39 20.044 83.689 19.607 1.00 3.00 O ATOM 125 N ASN 40 17.786 83.756 19.465 1.00 3.00 N ATOM 126 CA ASN 40 17.703 83.902 20.898 1.00 3.00 C ATOM 127 C ASN 40 18.345 82.725 21.638 1.00 3.00 C ATOM 128 O ASN 40 18.199 81.574 21.223 1.00 3.00 O ATOM 129 N ASP 41 19.046 83.036 22.724 1.00 3.00 N ATOM 130 CA ASP 41 19.569 82.019 23.636 1.00 3.00 C ATOM 131 C ASP 41 20.852 81.328 23.213 1.00 3.00 C ATOM 132 O ASP 41 21.310 80.418 23.901 1.00 3.00 O ATOM 133 N TYR 42 21.426 81.747 22.083 1.00 3.00 N ATOM 134 CA TYR 42 22.661 81.161 21.559 1.00 3.00 C ATOM 135 C TYR 42 23.869 82.073 21.780 1.00 3.00 C ATOM 136 O TYR 42 23.734 83.298 21.839 1.00 3.00 O ATOM 137 N VAL 43 25.049 81.458 21.877 1.00 3.00 N ATOM 138 CA VAL 43 26.296 82.182 22.101 1.00 3.00 C ATOM 139 C VAL 43 27.065 82.293 20.804 1.00 3.00 C ATOM 140 O VAL 43 27.173 81.323 20.068 1.00 3.00 O ATOM 141 N ILE 44 27.617 83.469 20.535 1.00 3.00 N ATOM 142 CA ILE 44 28.330 83.714 19.289 1.00 3.00 C ATOM 143 C ILE 44 29.787 84.041 19.563 1.00 3.00 C ATOM 144 O ILE 44 30.123 84.630 20.583 1.00 3.00 O ATOM 145 N VAL 45 30.656 83.674 18.633 1.00 3.00 N ATOM 146 CA VAL 45 32.054 84.028 18.754 1.00 3.00 C ATOM 147 C VAL 45 32.469 84.643 17.439 1.00 3.00 C ATOM 148 O VAL 45 32.533 83.944 16.437 1.00 3.00 O ATOM 149 N LYS 46 32.703 85.953 17.425 1.00 3.00 N ATOM 150 CA LYS 46 33.165 86.618 16.215 1.00 3.00 C ATOM 151 C LYS 46 34.674 86.459 16.120 1.00 3.00 C ATOM 152 O LYS 46 35.415 86.972 16.961 1.00 3.00 O ATOM 153 N VAL 47 35.119 85.749 15.090 1.00 3.00 N ATOM 154 CA VAL 47 36.534 85.447 14.912 1.00 3.00 C ATOM 155 C VAL 47 37.217 86.404 13.941 1.00 3.00 C ATOM 156 O VAL 47 36.551 87.124 13.193 1.00 3.00 O ATOM 157 N ASN 48 38.552 86.388 13.950 1.00 3.00 N ATOM 158 CA ASN 48 39.367 87.183 13.038 1.00 3.00 C ATOM 159 C ASN 48 39.225 86.691 11.608 1.00 3.00 C ATOM 160 O ASN 48 39.325 87.478 10.663 1.00 3.00 O ATOM 161 N GLU 49 39.014 85.384 11.462 1.00 3.00 N ATOM 162 CA GLU 49 38.799 84.773 10.149 1.00 3.00 C ATOM 163 C GLU 49 37.999 84.652 8.848 1.00 3.00 C ATOM 164 O GLU 49 38.016 85.614 8.039 1.00 3.00 O ATOM 165 N TYR 50 37.388 83.478 8.637 1.00 3.00 N ATOM 166 CA TYR 50 36.600 83.308 7.407 1.00 3.00 C ATOM 167 C TYR 50 35.598 84.446 7.259 1.00 3.00 C ATOM 168 O TYR 50 35.449 85.042 6.188 1.00 3.00 O ATOM 169 N PHE 51 34.875 84.758 8.357 1.00 3.00 N ATOM 170 CA PHE 51 33.747 85.719 8.278 1.00 3.00 C ATOM 171 C PHE 51 34.201 87.168 8.418 1.00 3.00 C ATOM 172 O PHE 51 33.359 88.088 8.413 1.00 3.00 O ATOM 173 N GLU 52 35.505 87.405 8.500 1.00 9.00 N ATOM 174 CA GLU 52 36.054 88.764 8.589 1.00 9.00 C ATOM 175 C GLU 52 37.083 88.993 7.479 1.00 9.00 C ATOM 176 O GLU 52 36.763 89.533 6.397 1.00 9.00 O ATOM 177 N SER 53 38.325 88.564 7.744 1.00 9.00 N ATOM 178 CA SER 53 39.384 88.759 6.764 1.00 9.00 C ATOM 179 C SER 53 39.026 88.165 5.403 1.00 9.00 C ATOM 180 O SER 53 39.367 88.775 4.378 1.00 9.00 O ATOM 181 N ARG 54 38.384 86.983 5.354 1.00 3.00 N ATOM 182 CA ARG 54 38.123 86.417 4.013 1.00 3.00 C ATOM 183 C ARG 54 36.806 86.871 3.368 1.00 3.00 C ATOM 184 O ARG 54 36.790 87.168 2.158 1.00 3.00 O ATOM 185 N VAL 55 35.712 86.936 4.158 1.00 3.00 N ATOM 186 CA VAL 55 34.395 87.225 3.579 1.00 3.00 C ATOM 187 C VAL 55 33.605 88.301 4.299 1.00 3.00 C ATOM 188 O VAL 55 32.371 88.359 4.332 1.00 3.00 O ATOM 189 N ILE 56 34.354 89.245 4.898 1.00 3.00 N ATOM 190 CA ILE 56 33.726 90.289 5.707 1.00 3.00 C ATOM 191 C ILE 56 34.361 91.643 5.407 1.00 3.00 C ATOM 192 O ILE 56 33.988 92.320 4.444 1.00 3.00 O ATOM 193 N PHE 57 35.338 92.026 6.226 1.00 3.00 N ATOM 194 CA PHE 57 36.051 93.291 6.025 1.00 3.00 C ATOM 195 C PHE 57 37.559 93.074 5.886 1.00 3.00 C ATOM 196 O PHE 57 38.304 93.279 6.845 1.00 3.00 O ATOM 197 N ASP 58 38.019 92.659 4.691 1.00 3.00 N ATOM 198 CA ASP 58 39.447 92.428 4.465 1.00 3.00 C ATOM 199 C ASP 58 40.251 93.720 4.350 1.00 3.00 C ATOM 200 O ASP 58 41.483 93.685 4.358 1.00 3.00 O ATOM 209 N THR 61 41.984 96.469 9.523 1.00 3.00 N ATOM 210 CA THR 61 42.719 95.690 10.512 1.00 3.00 C ATOM 211 C THR 61 41.978 95.733 11.840 1.00 3.00 C ATOM 212 O THR 61 41.184 96.641 12.096 1.00 3.00 O ATOM 213 N MET 62 42.236 94.740 12.680 1.00 3.00 N ATOM 214 CA MET 62 41.521 94.612 13.940 1.00 3.00 C ATOM 215 C MET 62 42.467 94.327 15.089 1.00 3.00 C ATOM 216 O MET 62 43.373 93.500 14.974 1.00 3.00 O ATOM 217 N GLN 63 42.255 95.042 16.188 1.00 3.00 N ATOM 218 CA GLN 63 43.014 94.832 17.408 1.00 3.00 C ATOM 219 C GLN 63 42.062 94.473 18.558 1.00 3.00 C ATOM 220 O GLN 63 40.844 94.482 18.388 1.00 3.00 O ATOM 221 N GLY 64 42.618 94.141 19.716 1.00 3.00 N ATOM 222 CA GLY 64 41.812 93.744 20.864 1.00 3.00 C ATOM 223 C GLY 64 41.922 92.260 21.153 1.00 3.00 C ATOM 224 O GLY 64 42.950 91.641 20.843 1.00 3.00 O ATOM 225 N LYS 65 40.862 91.677 21.748 1.00 3.00 N ATOM 226 CA LYS 65 40.744 90.247 22.029 1.00 3.00 C ATOM 227 C LYS 65 40.703 89.417 20.750 1.00 3.00 C ATOM 228 O LYS 65 40.360 89.933 19.684 1.00 3.00 O ATOM 229 N ASN 66 41.047 88.139 20.870 1.00 3.00 N ATOM 230 CA ASN 66 41.078 87.224 19.735 1.00 3.00 C ATOM 231 C ASN 66 39.709 87.118 19.074 1.00 3.00 C ATOM 232 O ASN 66 39.586 87.186 17.849 1.00 3.00 O ATOM 233 N ILE 67 38.692 86.949 19.912 1.00 3.00 N ATOM 234 CA ILE 67 37.312 86.820 19.486 1.00 3.00 C ATOM 235 C ILE 67 36.419 87.733 20.315 1.00 3.00 C ATOM 236 O ILE 67 36.766 88.104 21.441 1.00 3.00 O ATOM 237 N LEU 68 35.264 88.082 19.756 1.00 3.00 N ATOM 238 CA LEU 68 34.226 88.784 20.509 1.00 3.00 C ATOM 239 C LEU 68 33.156 87.770 20.884 1.00 3.00 C ATOM 240 O LEU 68 32.658 87.056 20.017 1.00 3.00 O ATOM 241 N GLU 69 32.807 87.714 22.167 1.00 3.00 N ATOM 242 CA GLU 69 31.799 86.775 22.659 1.00 3.00 C ATOM 243 C GLU 69 30.432 87.439 22.879 1.00 3.00 C ATOM 244 O GLU 69 30.286 88.317 23.724 1.00 3.00 O ATOM 245 N LEU 70 29.440 86.993 22.111 1.00 3.00 N ATOM 246 CA LEU 70 28.105 87.585 22.099 1.00 3.00 C ATOM 247 C LEU 70 27.054 86.632 22.668 1.00 3.00 C ATOM 248 O LEU 70 26.893 85.507 22.190 1.00 3.00 O ATOM 249 N PHE 71 26.342 87.101 23.681 1.00 3.00 N ATOM 250 CA PHE 71 25.229 86.369 24.267 1.00 3.00 C ATOM 251 C PHE 71 23.945 87.006 23.748 1.00 3.00 C ATOM 252 O PHE 71 23.769 88.209 23.875 1.00 3.00 O ATOM 253 N PRO 72 23.075 86.218 23.119 1.00 3.00 N ATOM 254 CA PRO 72 21.775 86.732 22.716 1.00 3.00 C ATOM 255 C PRO 72 20.683 86.366 23.727 1.00 3.00 C ATOM 256 O PRO 72 20.439 85.188 23.997 1.00 3.00 O ATOM 257 N GLU 73 20.034 87.385 24.279 1.00 3.00 N ATOM 258 CA GLU 73 18.852 87.205 25.117 1.00 3.00 C ATOM 259 C GLU 73 17.734 86.376 24.462 1.00 3.00 C ATOM 260 O GLU 73 17.635 86.269 23.231 1.00 3.00 O ATOM 261 N SER 74 16.899 85.762 25.288 1.00 3.00 N ATOM 262 CA SER 74 15.763 85.000 24.764 1.00 3.00 C ATOM 263 C SER 74 15.522 83.726 25.539 1.00 3.00 C ATOM 264 O SER 74 16.388 83.270 26.291 1.00 3.00 O ATOM 265 N ALA 75 14.326 83.170 25.365 1.00 3.00 N ATOM 266 CA ALA 75 13.965 81.875 25.916 1.00 3.00 C ATOM 267 C ALA 75 14.939 80.829 25.402 1.00 3.00 C ATOM 268 O ALA 75 15.575 81.023 24.361 1.00 3.00 O ATOM 269 N ASP 76 15.091 79.742 26.149 1.00 3.00 N ATOM 270 CA ASP 76 16.190 78.813 25.886 1.00 3.00 C ATOM 271 C ASP 76 15.769 77.578 25.102 1.00 3.00 C ATOM 272 O ASP 76 16.505 76.596 25.053 1.00 3.00 O ATOM 273 N TYR 77 14.603 77.643 24.469 1.00 3.00 N ATOM 274 CA TYR 77 14.014 76.483 23.824 1.00 3.00 C ATOM 275 C TYR 77 14.704 76.116 22.518 1.00 3.00 C ATOM 276 O TYR 77 14.926 74.940 22.235 1.00 3.00 O ATOM 277 N LEU 78 15.020 77.118 21.710 1.00 3.00 N ATOM 278 CA LEU 78 15.734 76.874 20.467 1.00 3.00 C ATOM 279 C LEU 78 17.120 76.273 20.779 1.00 3.00 C ATOM 280 O LEU 78 17.481 75.221 20.247 1.00 3.00 O ATOM 281 N LYS 79 17.875 76.960 21.633 1.00 3.00 N ATOM 282 CA LYS 79 19.163 76.497 22.152 1.00 3.00 C ATOM 283 C LYS 79 19.119 75.038 22.597 1.00 3.00 C ATOM 284 O LYS 79 19.922 74.228 22.140 1.00 3.00 O ATOM 285 N ARG 80 18.181 74.725 23.491 1.00 3.00 N ATOM 286 CA ARG 80 17.979 73.365 23.979 1.00 3.00 C ATOM 287 C ARG 80 17.789 72.382 22.831 1.00 3.00 C ATOM 288 O ARG 80 18.423 71.332 22.801 1.00 3.00 O ATOM 289 N LYS 81 16.929 72.735 21.879 1.00 3.00 N ATOM 290 CA LYS 81 16.612 71.838 20.771 1.00 3.00 C ATOM 291 C LYS 81 17.796 71.690 19.812 1.00 3.00 C ATOM 292 O LYS 81 18.014 70.624 19.228 1.00 3.00 O ATOM 293 N ILE 82 18.563 72.761 19.675 1.00 3.00 N ATOM 294 CA ILE 82 19.804 72.744 18.906 1.00 3.00 C ATOM 295 C ILE 82 20.865 71.879 19.616 1.00 3.00 C ATOM 296 O ILE 82 21.408 70.957 19.006 1.00 3.00 O ATOM 297 N ASP 83 21.108 72.139 20.902 1.00 3.00 N ATOM 298 CA ASP 83 22.082 71.375 21.697 1.00 3.00 C ATOM 299 C ASP 83 21.776 69.878 21.796 1.00 3.00 C ATOM 300 O ASP 83 22.690 69.043 21.708 1.00 3.00 O ATOM 301 N THR 84 20.500 69.541 21.997 1.00 3.00 N ATOM 302 CA THR 84 20.078 68.146 21.974 1.00 3.00 C ATOM 303 C THR 84 21.140 67.061 21.903 1.00 3.00 C ATOM 304 O THR 84 22.073 67.017 22.723 1.00 3.00 O ATOM 305 N ALA 85 21.005 66.179 20.922 1.00 3.00 N ATOM 306 CA ALA 85 21.993 65.130 20.738 1.00 3.00 C ATOM 307 C ALA 85 23.037 65.579 19.696 1.00 3.00 C ATOM 308 O ALA 85 22.806 65.468 18.483 1.00 3.00 O ATOM 309 N LEU 86 24.175 66.106 20.169 1.00 3.00 N ATOM 310 CA LEU 86 25.233 66.564 19.263 1.00 3.00 C ATOM 311 C LEU 86 25.549 65.472 18.271 1.00 3.00 C ATOM 312 O LEU 86 25.857 64.355 18.643 1.00 3.00 O ATOM 313 N VAL 87 25.516 65.788 16.971 1.00 3.00 N ATOM 314 CA VAL 87 25.782 64.812 15.910 1.00 3.00 C ATOM 315 C VAL 87 27.027 63.930 16.091 1.00 3.00 C ATOM 316 O VAL 87 27.014 62.761 15.730 1.00 3.00 O ATOM 317 N ILE 88 28.088 64.484 16.658 1.00 3.00 N ATOM 318 CA ILE 88 29.298 63.693 16.845 1.00 3.00 C ATOM 319 C ILE 88 29.089 62.546 17.844 1.00 3.00 C ATOM 320 O ILE 88 29.413 61.390 17.556 1.00 3.00 O ATOM 321 N GLU 89 28.528 62.878 18.991 1.00 3.00 N ATOM 322 CA GLU 89 28.300 61.881 20.050 1.00 3.00 C ATOM 323 C GLU 89 28.529 62.400 21.481 1.00 3.00 C ATOM 324 O GLU 89 28.545 61.623 22.439 1.00 3.00 O ATOM 325 N SER 90 28.658 63.717 21.615 1.00 3.00 N ATOM 326 CA SER 90 29.102 64.336 22.862 1.00 3.00 C ATOM 327 C SER 90 27.978 64.798 23.792 1.00 3.00 C ATOM 328 O SER 90 26.830 64.954 23.371 1.00 3.00 O ATOM 329 N SER 91 28.335 65.012 25.060 1.00 3.00 N ATOM 330 CA SER 91 27.447 65.625 26.056 1.00 3.00 C ATOM 331 C SER 91 28.235 66.646 26.893 1.00 3.00 C ATOM 332 O SER 91 29.468 66.661 26.838 1.00 3.00 O ATOM 333 N SER 92 27.524 67.492 27.647 1.00 3.00 N ATOM 334 CA SER 92 28.124 68.492 28.556 1.00 3.00 C ATOM 335 C SER 92 29.149 69.403 27.873 1.00 3.00 C ATOM 336 O SER 92 30.217 69.682 28.426 1.00 3.00 O ATOM 337 N PHE 93 28.814 69.862 26.672 1.00 3.00 N ATOM 338 CA PHE 93 29.730 70.656 25.870 1.00 3.00 C ATOM 339 C PHE 93 29.249 72.100 25.761 1.00 3.00 C ATOM 340 O PHE 93 28.075 72.396 26.015 1.00 3.00 O ATOM 341 N SER 94 30.164 72.995 25.398 1.00 3.00 N ATOM 342 CA SER 94 29.800 74.342 25.004 1.00 3.00 C ATOM 343 C SER 94 29.821 74.388 23.482 1.00 3.00 C ATOM 344 O SER 94 30.641 73.712 22.856 1.00 3.00 O ATOM 345 N SER 95 28.909 75.169 22.899 1.00 3.00 N ATOM 346 CA SER 95 28.936 75.471 21.462 1.00 3.00 C ATOM 347 C SER 95 28.788 76.976 21.192 1.00 3.00 C ATOM 348 O SER 95 28.033 77.680 21.869 1.00 3.00 O ATOM 429 N GLU 116 25.149 68.660 10.531 1.00 3.00 N ATOM 430 CA GLU 116 26.143 67.885 9.767 1.00 3.00 C ATOM 431 C GLU 116 27.555 68.301 10.174 1.00 3.00 C ATOM 432 O GLU 116 27.803 69.471 10.473 1.00 3.00 O ATOM 433 N GLN 117 28.473 67.340 10.185 1.00 3.00 N ATOM 434 CA GLN 117 29.874 67.593 10.516 1.00 3.00 C ATOM 435 C GLN 117 30.586 68.283 9.364 1.00 3.00 C ATOM 436 O GLN 117 30.560 67.795 8.232 1.00 3.00 O ATOM 437 N MET 118 31.216 69.418 9.651 1.00 3.00 N ATOM 438 CA MET 118 32.019 70.109 8.647 1.00 3.00 C ATOM 439 C MET 118 33.450 69.594 8.725 1.00 3.00 C ATOM 440 O MET 118 34.011 69.128 7.734 1.00 3.00 O ATOM 441 N TYR 119 34.019 69.670 9.923 1.00 3.00 N ATOM 442 CA TYR 119 35.341 69.140 10.207 1.00 3.00 C ATOM 443 C TYR 119 35.395 68.748 11.679 1.00 3.00 C ATOM 444 O TYR 119 34.356 68.532 12.314 1.00 3.00 O ATOM 445 N GLN 120 36.610 68.670 12.214 1.00 3.00 N ATOM 446 CA GLN 120 36.827 68.401 13.629 1.00 3.00 C ATOM 447 C GLN 120 36.288 69.557 14.475 1.00 3.00 C ATOM 448 O GLN 120 36.714 70.708 14.310 1.00 3.00 O ATOM 449 N ASN 121 35.330 69.232 15.347 1.00 3.00 N ATOM 450 CA ASN 121 34.725 70.174 16.307 1.00 3.00 C ATOM 451 C ASN 121 33.831 71.268 15.705 1.00 3.00 C ATOM 452 O ASN 121 33.473 72.230 16.382 1.00 3.00 O ATOM 453 N LEU 122 33.474 71.102 14.436 1.00 3.00 N ATOM 454 CA LEU 122 32.724 72.105 13.694 1.00 3.00 C ATOM 455 C LEU 122 31.506 71.471 13.017 1.00 3.00 C ATOM 456 O LEU 122 31.633 70.550 12.206 1.00 3.00 O ATOM 457 N GLU 123 30.321 71.961 13.366 1.00 3.00 N ATOM 458 CA GLU 123 29.091 71.398 12.836 1.00 3.00 C ATOM 459 C GLU 123 28.219 72.472 12.207 1.00 3.00 C ATOM 460 O GLU 123 28.171 73.602 12.704 1.00 3.00 O ATOM 461 N VAL 124 27.564 72.123 11.095 1.00 3.00 N ATOM 462 CA VAL 124 26.588 73.007 10.466 1.00 3.00 C ATOM 463 C VAL 124 25.195 72.675 10.963 1.00 3.00 C ATOM 464 O VAL 124 24.659 71.615 10.652 1.00 3.00 O ATOM 465 N ILE 125 24.610 73.590 11.726 1.00 3.00 N ATOM 466 CA ILE 125 23.265 73.411 12.233 1.00 3.00 C ATOM 467 C ILE 125 22.271 74.163 11.359 1.00 3.00 C ATOM 468 O ILE 125 22.178 75.406 11.398 1.00 3.00 O ATOM 469 N PRO 126 21.507 73.404 10.593 1.00 3.00 N ATOM 470 CA PRO 126 20.548 73.971 9.668 1.00 3.00 C ATOM 471 C PRO 126 19.167 74.061 10.301 1.00 3.00 C ATOM 472 O PRO 126 18.633 73.060 10.799 1.00 3.00 O ATOM 473 N ILE 127 18.581 75.256 10.256 1.00 3.00 N ATOM 474 CA ILE 127 17.258 75.484 10.834 1.00 3.00 C ATOM 475 C ILE 127 16.268 75.912 9.769 1.00 3.00 C ATOM 476 O ILE 127 16.491 76.903 9.074 1.00 3.00 O ATOM 477 N HIS 128 15.186 75.162 9.631 1.00 3.00 N ATOM 478 CA HIS 128 14.079 75.555 8.797 1.00 3.00 C ATOM 479 C HIS 128 13.027 76.258 9.593 1.00 3.00 C ATOM 480 O HIS 128 12.547 75.774 10.596 1.00 3.00 O ATOM 481 N SER 129 12.658 77.411 9.096 1.00 3.00 N ATOM 482 CA SER 129 11.561 78.148 9.694 1.00 3.00 C ATOM 483 C SER 129 10.441 78.204 8.662 1.00 3.00 C ATOM 484 O SER 129 10.697 78.021 7.463 1.00 3.00 O ATOM 485 N GLU 130 9.190 78.421 9.116 1.00 3.00 N ATOM 486 CA GLU 130 8.086 78.585 8.167 1.00 3.00 C ATOM 487 C GLU 130 8.381 79.611 7.058 1.00 3.00 C ATOM 488 O GLU 130 7.968 79.410 5.919 1.00 3.00 O ATOM 489 N ASP 131 9.120 80.671 7.385 1.00 3.00 N ATOM 490 CA ASP 131 9.412 81.734 6.420 1.00 3.00 C ATOM 491 C ASP 131 10.768 81.645 5.706 1.00 3.00 C ATOM 492 O ASP 131 10.884 82.073 4.557 1.00 3.00 O ATOM 493 N GLY 132 11.776 81.075 6.363 1.00 3.00 N ATOM 494 CA GLY 132 13.155 81.136 5.860 1.00 3.00 C ATOM 495 C GLY 132 14.058 80.035 6.450 1.00 3.00 C ATOM 496 O GLY 132 13.574 79.109 7.112 1.00 3.00 O ATOM 497 N THR 133 15.365 80.152 6.207 1.00 3.00 N ATOM 498 CA THR 133 16.354 79.166 6.635 1.00 3.00 C ATOM 499 C THR 133 17.547 79.854 7.312 1.00 3.00 C ATOM 500 O THR 133 18.002 80.899 6.845 1.00 3.00 O ATOM 501 N ILE 134 18.043 79.284 8.416 1.00 3.00 N ATOM 502 CA ILE 134 19.337 79.693 8.984 1.00 3.00 C ATOM 503 C ILE 134 20.303 78.503 9.138 1.00 3.00 C ATOM 504 O ILE 134 19.944 77.483 9.718 1.00 3.00 O ATOM 505 N GLU 135 21.517 78.632 8.597 1.00 3.00 N ATOM 506 CA GLU 135 22.619 77.707 8.916 1.00 3.00 C ATOM 507 C GLU 135 23.596 78.361 9.928 1.00 3.00 C ATOM 508 O GLU 135 24.100 79.471 9.705 1.00 3.00 O ATOM 509 N HIS 136 23.819 77.694 11.057 1.00 3.00 N ATOM 510 CA HIS 136 24.806 78.152 12.031 1.00 3.00 C ATOM 511 C HIS 136 25.956 77.171 12.003 1.00 3.00 C ATOM 512 O HIS 136 25.745 75.968 12.194 1.00 3.00 O ATOM 513 N VAL 137 27.163 77.679 11.760 1.00 3.00 N ATOM 514 CA VAL 137 28.363 76.867 11.913 1.00 3.00 C ATOM 515 C VAL 137 28.814 77.030 13.354 1.00 3.00 C ATOM 516 O VAL 137 29.074 78.148 13.821 1.00 3.00 O ATOM 517 N CYS 138 28.828 75.915 14.076 1.00 3.00 N ATOM 518 CA CYS 138 29.049 75.953 15.512 1.00 3.00 C ATOM 519 C CYS 138 30.329 75.205 15.915 1.00 3.00 C ATOM 520 O CYS 138 30.531 74.047 15.549 1.00 3.00 O ATOM 521 N LEU 139 31.204 75.905 16.634 1.00 3.00 N ATOM 522 CA LEU 139 32.425 75.323 17.173 1.00 3.00 C ATOM 523 C LEU 139 32.131 74.730 18.545 1.00 3.00 C ATOM 524 O LEU 139 31.579 75.400 19.424 1.00 3.00 O ATOM 525 N CYS 140 32.496 73.464 18.705 1.00 3.00 N ATOM 526 CA CYS 140 32.263 72.738 19.937 1.00 3.00 C ATOM 527 C CYS 140 33.493 72.777 20.842 1.00 3.00 C ATOM 528 O CYS 140 34.613 72.550 20.391 1.00 3.00 O ATOM 529 N VAL 141 33.264 73.058 22.122 1.00 3.00 N ATOM 530 CA VAL 141 34.320 73.093 23.132 1.00 3.00 C ATOM 531 C VAL 141 33.897 72.322 24.369 1.00 3.00 C ATOM 532 O VAL 141 32.757 72.432 24.817 1.00 3.00 O ATOM 533 N TYR 142 34.828 71.549 24.921 1.00 3.00 N ATOM 534 CA TYR 142 34.656 70.965 26.245 1.00 3.00 C ATOM 535 C TYR 142 35.902 71.293 27.054 1.00 3.00 C ATOM 536 O TYR 142 36.936 70.623 26.940 1.00 3.00 O ATOM 537 N ASP 143 35.798 72.350 27.852 1.00 3.00 N ATOM 538 CA ASP 143 36.921 72.848 28.628 1.00 3.00 C ATOM 539 C ASP 143 36.860 72.241 30.019 1.00 3.00 C ATOM 540 O ASP 143 35.850 72.364 30.703 1.00 3.00 O ATOM 541 N VAL 144 37.938 71.573 30.429 1.00 3.00 N ATOM 542 CA VAL 144 37.962 70.864 31.710 1.00 3.00 C ATOM 543 C VAL 144 39.353 70.901 32.318 1.00 3.00 C ATOM 544 O VAL 144 40.324 71.192 31.630 1.00 3.00 O ATOM 545 N THR 145 39.442 70.610 33.611 1.00 3.00 N ATOM 546 CA THR 145 40.735 70.472 34.271 1.00 3.00 C ATOM 547 C THR 145 41.323 69.085 34.060 1.00 3.00 C ATOM 548 O THR 145 40.754 68.088 34.495 1.00 3.00 O ATOM 549 N ILE 146 42.457 69.034 33.369 1.00 3.00 N ATOM 550 CA ILE 146 43.126 67.770 33.076 1.00 3.00 C ATOM 551 C ILE 146 44.481 67.658 33.786 1.00 3.00 C ATOM 552 O ILE 146 45.034 68.651 34.250 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 368 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.36 49.3 138 76.2 181 ARMSMC SECONDARY STRUCTURE . . 57.08 58.7 75 71.4 105 ARMSMC SURFACE . . . . . . . . 73.05 45.2 93 74.4 125 ARMSMC BURIED . . . . . . . . 73.98 57.8 45 80.4 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 67 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 22 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.87 (Number of atoms: 92) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.87 92 98.9 93 CRMSCA CRN = ALL/NP . . . . . 0.1507 CRMSCA SECONDARY STRUCTURE . . 12.84 54 100.0 54 CRMSCA SURFACE . . . . . . . . 14.55 63 98.4 64 CRMSCA BURIED . . . . . . . . 12.23 29 100.0 29 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.73 368 79.5 463 CRMSMC SECONDARY STRUCTURE . . 12.61 216 80.0 270 CRMSMC SURFACE . . . . . . . . 14.37 252 79.2 318 CRMSMC BURIED . . . . . . . . 12.23 116 80.0 145 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 364 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 308 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 214 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 258 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 106 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.73 368 50.0 736 CRMSALL SECONDARY STRUCTURE . . 12.61 216 50.2 430 CRMSALL SURFACE . . . . . . . . 14.37 252 49.0 514 CRMSALL BURIED . . . . . . . . 12.23 116 52.3 222 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.514 0.552 0.276 92 98.9 93 ERRCA SECONDARY STRUCTURE . . 8.394 0.516 0.258 54 100.0 54 ERRCA SURFACE . . . . . . . . 10.137 0.565 0.283 63 98.4 64 ERRCA BURIED . . . . . . . . 8.161 0.522 0.261 29 100.0 29 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.429 0.553 0.276 368 79.5 463 ERRMC SECONDARY STRUCTURE . . 8.246 0.517 0.259 216 80.0 270 ERRMC SURFACE . . . . . . . . 10.010 0.567 0.283 252 79.2 318 ERRMC BURIED . . . . . . . . 8.166 0.522 0.261 116 80.0 145 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 364 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 308 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 214 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 258 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 106 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.429 0.553 0.276 368 50.0 736 ERRALL SECONDARY STRUCTURE . . 8.246 0.517 0.259 216 50.2 430 ERRALL SURFACE . . . . . . . . 10.010 0.567 0.283 252 49.0 514 ERRALL BURIED . . . . . . . . 8.166 0.522 0.261 116 52.3 222 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 34 92 93 DISTCA CA (P) 0.00 0.00 1.08 5.38 36.56 93 DISTCA CA (RMS) 0.00 0.00 2.89 3.85 7.48 DISTCA ALL (N) 0 0 3 20 138 368 736 DISTALL ALL (P) 0.00 0.00 0.41 2.72 18.75 736 DISTALL ALL (RMS) 0.00 0.00 2.56 4.25 7.58 DISTALL END of the results output