####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # ERROR! Check molecule: 1 and the amino acid number 50 and name TYR # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 50 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 130 and name GLU # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 130 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 50 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 130 (molecule: 1) # Only one atom (first) is used for calculations. # Molecule1: number of CA atoms 90 ( 368), selected 90 , name T0536AL396_1-D1 # Molecule2: number of CA atoms 93 ( 736), selected 90 , name T0536-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0536AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 90 33 - 147 3.84 3.84 LCS_AVERAGE: 96.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 118 - 144 1.98 4.37 LONGEST_CONTINUOUS_SEGMENT: 27 119 - 145 1.97 4.35 LCS_AVERAGE: 20.97 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 74 - 90 0.82 20.76 LCS_AVERAGE: 11.51 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 90 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 33 F 33 8 18 90 9 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT A 34 A 34 8 18 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 35 L 35 13 18 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT C 36 C 36 13 18 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 37 I 37 13 18 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 38 V 38 13 18 90 11 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT R 39 R 39 13 18 90 8 18 31 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT N 40 N 40 13 18 90 8 18 26 35 47 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT D 41 D 41 13 18 90 8 18 25 35 42 55 61 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Y 42 Y 42 13 18 90 8 18 26 35 48 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 43 V 43 13 18 90 8 18 31 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 44 I 44 13 18 90 10 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 45 V 45 13 18 90 12 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT K 46 K 46 13 18 90 11 26 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 47 V 47 13 18 90 12 27 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT N 48 N 48 8 18 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 49 E 49 7 18 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Y 50 Y 50 7 18 90 5 24 32 40 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT F 51 F 51 3 8 90 3 3 4 6 6 14 21 36 54 69 73 79 84 87 87 88 89 89 90 90 LCS_GDT E 52 E 52 3 5 90 3 3 4 6 12 15 28 36 51 67 72 79 84 87 87 88 89 89 90 90 LCS_GDT S 53 S 53 3 4 90 3 12 34 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT R 54 R 54 3 3 90 3 3 3 3 4 6 53 64 70 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 55 V 55 3 4 90 3 3 3 3 5 14 28 38 60 67 71 80 83 87 87 88 89 89 90 90 LCS_GDT I 56 I 56 3 14 90 3 3 7 10 16 20 28 30 34 46 59 66 75 82 84 88 89 89 90 90 LCS_GDT F 57 F 57 3 15 90 3 3 3 13 17 28 44 55 64 75 79 82 84 87 87 88 89 89 90 90 LCS_GDT D 58 D 58 3 15 90 3 3 3 13 20 29 34 56 67 75 79 82 84 87 87 88 89 89 90 90 LCS_GDT T 61 T 61 9 15 90 8 21 34 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT M 62 M 62 9 15 90 8 18 28 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Q 63 Q 63 9 15 90 12 26 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT G 64 G 64 9 15 90 13 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT K 65 K 65 9 15 90 8 18 34 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT N 66 N 66 9 15 90 8 18 26 37 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 67 I 67 9 15 90 5 18 24 35 45 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 68 L 68 9 15 90 4 15 26 35 45 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 69 E 69 9 15 90 6 17 30 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 70 L 70 8 15 90 4 10 28 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT F 71 F 71 8 15 90 5 17 28 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT P 72 P 72 4 20 90 3 22 34 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 73 E 73 4 20 90 3 14 26 35 42 49 57 64 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT S 74 S 74 17 20 90 4 13 16 17 18 45 57 64 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT A 75 A 75 17 20 90 5 20 35 41 49 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT D 76 D 76 17 20 90 4 15 22 34 47 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Y 77 Y 77 17 20 90 9 15 23 35 40 48 57 65 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 78 L 78 17 20 90 9 15 16 17 18 44 57 65 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT K 79 K 79 17 20 90 7 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT R 80 R 80 17 20 90 9 15 25 33 40 49 58 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT K 81 K 81 17 20 90 9 15 16 33 40 47 56 65 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 82 I 82 17 20 90 9 15 17 35 41 55 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT D 83 D 83 17 20 90 9 15 22 40 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT T 84 T 84 17 20 90 9 15 23 32 40 48 60 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT A 85 A 85 17 20 90 9 15 16 22 39 50 60 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 86 L 86 17 20 90 8 15 19 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 87 V 87 17 20 90 9 15 16 21 28 55 59 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 88 I 88 17 20 90 8 15 16 25 39 48 60 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 89 E 89 17 20 90 4 15 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT S 90 S 90 17 20 90 4 11 16 17 27 41 54 64 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT S 91 S 91 4 20 90 3 3 7 14 33 44 55 65 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT S 92 S 92 3 5 90 3 3 15 25 33 44 55 63 72 76 79 82 84 87 87 88 89 89 90 90 LCS_GDT E 116 E 116 3 6 90 1 3 3 4 6 7 9 18 39 54 65 75 79 80 83 85 87 89 90 90 LCS_GDT Q 117 Q 117 3 13 90 3 3 5 8 25 42 55 63 70 75 80 81 84 87 87 88 89 89 90 90 LCS_GDT M 118 M 118 6 27 90 3 4 14 32 43 55 62 66 71 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Y 119 Y 119 10 27 90 12 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Q 120 Q 120 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT N 121 N 121 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 122 L 122 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 123 E 123 10 27 90 15 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 124 V 124 12 27 90 12 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 125 I 125 12 27 90 15 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT P 126 P 126 13 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 127 I 127 13 27 90 8 17 34 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT H 128 H 128 13 27 90 8 16 31 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT S 129 S 129 13 27 90 7 15 25 34 47 55 59 66 71 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 130 E 130 13 27 90 7 15 25 31 40 48 57 66 71 76 80 82 84 87 87 88 89 89 90 90 LCS_GDT D 131 D 131 13 27 90 7 15 25 33 40 51 57 66 71 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT G 132 G 132 13 27 90 7 15 25 37 47 56 62 66 71 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT T 133 T 133 13 27 90 7 17 28 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 134 I 134 13 27 90 4 20 34 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT E 135 E 135 13 27 90 4 15 26 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT H 136 H 136 13 27 90 11 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 137 V 137 13 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT C 138 C 138 13 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT L 139 L 139 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT C 140 C 140 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 141 V 141 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT Y 142 Y 142 10 27 90 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT D 143 D 143 10 27 90 15 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT V 144 V 144 10 27 90 7 23 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT T 145 T 145 10 27 90 0 23 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 LCS_GDT I 146 I 146 3 15 90 0 3 3 3 10 13 41 59 62 68 75 79 84 87 87 88 89 89 90 90 LCS_GDT Q 147 Q 147 3 3 90 0 3 3 3 4 4 7 7 10 39 48 71 77 83 84 87 89 89 90 90 LCS_AVERAGE LCS_A: 43.08 ( 11.51 20.97 96.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 28 35 41 50 56 62 66 72 77 80 82 84 87 87 88 89 89 90 90 GDT PERCENT_AT 17.20 30.11 37.63 44.09 53.76 60.22 66.67 70.97 77.42 82.80 86.02 88.17 90.32 93.55 93.55 94.62 95.70 95.70 96.77 96.77 GDT RMS_LOCAL 0.30 0.63 0.84 1.12 1.48 1.71 1.93 2.21 2.61 2.74 2.93 3.04 3.18 3.43 3.43 3.54 3.69 3.69 3.84 3.84 GDT RMS_ALL_AT 4.19 4.20 4.21 4.04 3.91 3.88 3.88 3.86 3.90 3.90 3.91 3.91 3.91 3.85 3.85 3.86 3.85 3.85 3.84 3.84 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 33 F 33 1.460 7 0.065 0.065 1.460 85.952 31.255 LGA A 34 A 34 0.521 1 0.095 0.095 0.727 92.857 74.286 LGA L 35 L 35 0.129 4 0.042 0.042 0.507 97.619 48.810 LGA C 36 C 36 0.591 2 0.102 0.102 0.591 92.857 61.905 LGA I 37 I 37 0.719 4 0.015 0.015 0.846 92.857 46.429 LGA V 38 V 38 0.286 3 0.058 0.058 0.462 100.000 57.143 LGA R 39 R 39 1.403 7 0.050 0.050 1.669 79.405 28.874 LGA N 40 N 40 2.836 4 0.045 0.045 3.774 53.810 26.905 LGA D 41 D 41 3.662 4 0.026 0.026 3.662 48.333 24.167 LGA Y 42 Y 42 2.649 8 0.087 0.087 2.744 59.048 19.683 LGA V 43 V 43 1.182 3 0.031 0.031 1.711 86.190 49.252 LGA I 44 I 44 1.051 4 0.077 0.077 1.574 81.548 40.774 LGA V 45 V 45 1.428 3 0.092 0.092 1.887 77.143 44.082 LGA K 46 K 46 1.649 5 0.069 0.069 1.779 77.143 34.286 LGA V 47 V 47 1.099 3 0.091 0.091 1.509 83.810 47.891 LGA N 48 N 48 0.583 4 0.133 0.133 0.812 92.857 46.429 LGA E 49 E 49 0.705 5 0.531 0.531 4.224 70.714 31.429 LGA Y 50 Y 50 2.518 8 0.082 0.082 5.436 50.476 16.825 LGA F 51 F 51 6.427 7 0.573 0.573 6.427 24.405 8.874 LGA E 52 E 52 6.664 5 0.580 0.580 7.021 22.976 10.212 LGA S 53 S 53 1.788 2 0.072 0.072 3.016 67.143 44.762 LGA R 54 R 54 4.494 7 0.082 0.082 4.807 35.833 13.030 LGA V 55 V 55 7.402 3 0.565 0.565 9.000 9.405 5.374 LGA I 56 I 56 9.090 4 0.592 0.592 9.516 2.857 1.429 LGA F 57 F 57 6.723 7 0.117 0.117 7.076 13.452 4.892 LGA D 58 D 58 6.366 4 0.034 0.034 6.478 21.667 10.833 LGA T 61 T 61 2.343 3 0.035 0.035 2.885 64.881 37.075 LGA M 62 M 62 2.654 4 0.014 0.014 2.697 62.976 31.488 LGA Q 63 Q 63 1.888 5 0.011 0.011 2.172 75.119 33.386 LGA G 64 G 64 0.592 0 0.183 0.183 1.004 90.595 90.595 LGA K 65 K 65 1.083 5 0.022 0.022 1.499 83.690 37.196 LGA N 66 N 66 2.439 4 0.107 0.107 2.604 62.857 31.429 LGA I 67 I 67 3.121 4 0.049 0.049 3.121 53.571 26.786 LGA L 68 L 68 3.198 4 0.106 0.106 3.198 53.571 26.786 LGA E 69 E 69 1.462 5 0.161 0.161 1.886 77.143 34.286 LGA L 70 L 70 2.062 4 0.132 0.132 2.927 64.881 32.440 LGA F 71 F 71 2.268 7 0.413 0.413 3.592 63.452 23.074 LGA P 72 P 72 1.259 3 0.625 0.625 1.578 81.548 46.599 LGA E 73 E 73 5.288 5 0.208 0.208 6.113 28.214 12.540 LGA S 74 S 74 5.546 2 0.144 0.144 5.546 30.357 20.238 LGA A 75 A 75 3.236 1 0.033 0.033 3.236 59.405 47.524 LGA D 76 D 76 3.072 4 0.069 0.069 3.311 55.714 27.857 LGA Y 77 Y 77 5.505 8 0.070 0.070 5.505 30.595 10.198 LGA L 78 L 78 4.770 4 0.022 0.022 4.770 40.476 20.238 LGA K 79 K 79 2.023 5 0.032 0.032 2.023 72.976 32.434 LGA R 80 R 80 4.126 7 0.022 0.022 4.427 44.048 16.017 LGA K 81 K 81 5.432 5 0.058 0.058 5.432 32.976 14.656 LGA I 82 I 82 3.600 4 0.036 0.036 3.600 53.810 26.905 LGA D 83 D 83 1.963 4 0.017 0.017 2.403 73.214 36.607 LGA T 84 T 84 4.282 3 0.080 0.080 4.282 45.238 25.850 LGA A 85 A 85 4.258 1 0.014 0.014 4.258 46.905 37.524 LGA L 86 L 86 2.997 4 0.072 0.072 3.157 59.167 29.583 LGA V 87 V 87 3.857 3 0.064 0.064 4.361 47.143 26.939 LGA I 88 I 88 4.182 4 0.071 0.071 4.410 43.571 21.786 LGA E 89 E 89 1.917 5 0.106 0.106 4.347 56.548 25.132 LGA S 90 S 90 6.069 2 0.599 0.599 6.360 21.786 14.524 LGA S 91 S 91 5.484 2 0.015 0.015 5.758 30.476 20.317 LGA S 92 S 92 5.170 2 0.672 0.672 5.228 28.929 19.286 LGA E 116 E 116 10.509 5 0.403 0.403 10.784 2.976 1.323 LGA Q 117 Q 117 6.561 5 0.468 0.468 7.702 14.762 6.561 LGA M 118 M 118 3.775 4 0.067 0.067 4.491 45.119 22.560 LGA Y 119 Y 119 2.843 8 0.180 0.180 2.843 60.952 20.317 LGA Q 120 Q 120 1.636 5 0.046 0.046 2.072 70.833 31.481 LGA N 121 N 121 1.309 4 0.100 0.100 1.627 79.286 39.643 LGA L 122 L 122 1.236 4 0.035 0.035 1.236 81.429 40.714 LGA E 123 E 123 1.051 5 0.027 0.027 1.165 85.952 38.201 LGA V 124 V 124 1.461 3 0.039 0.039 1.926 77.143 44.082 LGA I 125 I 125 1.634 4 0.097 0.097 1.650 75.000 37.500 LGA P 126 P 126 1.280 3 0.084 0.084 1.542 79.286 45.306 LGA I 127 I 127 1.736 4 0.086 0.086 1.880 72.857 36.429 LGA H 128 H 128 2.312 6 0.046 0.046 3.795 55.714 22.286 LGA S 129 S 129 4.575 2 0.068 0.068 5.149 31.786 21.190 LGA E 130 E 130 6.745 5 0.176 0.176 6.745 15.357 6.825 LGA D 131 D 131 6.140 4 0.120 0.120 6.325 22.976 11.488 LGA G 132 G 132 4.091 0 0.207 0.207 4.881 45.833 45.833 LGA T 133 T 133 2.842 3 0.030 0.030 3.356 57.262 32.721 LGA I 134 I 134 0.804 4 0.083 0.083 2.839 75.476 37.738 LGA E 135 E 135 2.728 5 0.061 0.061 2.728 62.976 27.989 LGA H 136 H 136 1.213 6 0.132 0.132 1.404 81.429 32.571 LGA V 137 V 137 1.282 3 0.063 0.063 1.282 85.952 49.116 LGA C 138 C 138 0.751 2 0.062 0.062 1.026 88.214 58.810 LGA L 139 L 139 0.674 4 0.013 0.013 0.725 95.238 47.619 LGA C 140 C 140 0.398 2 0.056 0.056 0.855 95.238 63.492 LGA V 141 V 141 1.199 3 0.039 0.039 1.419 83.690 47.823 LGA Y 142 Y 142 1.487 8 0.023 0.023 1.847 77.143 25.714 LGA D 143 D 143 2.026 4 0.035 0.035 2.242 66.786 33.393 LGA V 144 V 144 2.902 3 0.681 0.681 5.865 46.667 26.667 LGA T 145 T 145 2.516 3 0.621 0.621 3.484 59.167 33.810 LGA I 146 I 146 7.541 4 0.595 0.595 8.394 9.524 4.762 LGA Q 147 Q 147 10.452 5 0.205 0.205 10.452 1.429 0.635 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 90 360 360 100.00 713 360 50.49 93 SUMMARY(RMSD_GDC): 3.840 3.657 3.657 56.555 29.696 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 90 93 4.0 66 2.21 59.946 53.615 2.861 LGA_LOCAL RMSD: 2.207 Number of atoms: 66 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.859 Number of assigned atoms: 90 Std_ASGN_ATOMS RMSD: 3.840 Standard rmsd on all 90 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.420383 * X + -0.872339 * Y + 0.249605 * Z + 47.720177 Y_new = 0.902461 * X + -0.373479 * Y + 0.214657 * Z + 59.915413 Z_new = -0.094031 * X + 0.315497 * Y + 0.944256 * Z + 9.559011 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.006727 0.094171 0.322460 [DEG: 114.9770 5.3956 18.4756 ] ZXZ: 2.281060 0.335468 -0.289660 [DEG: 130.6951 19.2209 -16.5963 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0536AL396_1-D1 REMARK 2: T0536-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0536AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 90 93 4.0 66 2.21 53.615 3.84 REMARK ---------------------------------------------------------- MOLECULE T0536AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2qkp_A ATOM 113 N PHE 33 30.343 69.292 25.460 1.00 0.00 N ATOM 114 CA PHE 33 30.645 70.002 24.216 1.00 0.00 C ATOM 115 C PHE 33 30.832 71.472 24.530 1.00 0.00 C ATOM 116 O PHE 33 30.135 71.993 25.393 1.00 0.00 O ATOM 117 N ALA 34 31.757 72.127 23.834 1.00 0.00 N ATOM 118 CA ALA 34 31.853 73.586 23.849 1.00 0.00 C ATOM 119 C ALA 34 30.985 74.006 22.671 1.00 0.00 C ATOM 120 O ALA 34 31.267 73.621 21.533 1.00 0.00 O ATOM 121 N LEU 35 29.934 74.780 22.948 1.00 0.00 N ATOM 122 CA LEU 35 28.927 75.116 21.924 1.00 0.00 C ATOM 123 C LEU 35 28.997 76.609 21.685 1.00 0.00 C ATOM 124 O LEU 35 29.130 77.392 22.639 1.00 0.00 O ATOM 125 N CYS 36 28.915 77.013 20.422 1.00 0.00 N ATOM 126 CA CYS 36 28.751 78.446 20.114 1.00 0.00 C ATOM 127 C CYS 36 27.667 78.559 19.060 1.00 0.00 C ATOM 128 O CYS 36 27.471 77.633 18.272 1.00 0.00 O ATOM 129 N ILE 37 26.953 79.678 19.047 1.00 0.00 N ATOM 130 CA ILE 37 25.915 79.859 18.048 1.00 0.00 C ATOM 131 C ILE 37 26.044 81.248 17.452 1.00 0.00 C ATOM 132 O ILE 37 26.142 82.223 18.176 1.00 0.00 O ATOM 133 N VAL 38 26.026 81.302 16.127 1.00 0.00 N ATOM 134 CA VAL 38 26.033 82.565 15.371 1.00 0.00 C ATOM 135 C VAL 38 24.712 82.648 14.607 1.00 0.00 C ATOM 136 O VAL 38 24.324 81.685 13.934 1.00 0.00 O ATOM 137 N ARG 39 23.992 83.763 14.697 1.00 0.00 N ATOM 138 CA ARG 39 22.633 83.787 14.117 1.00 0.00 C ATOM 139 C ARG 39 22.707 84.112 12.627 1.00 0.00 C ATOM 140 O ARG 39 23.802 84.282 12.079 1.00 0.00 O ATOM 141 N ASN 40 21.541 84.169 11.994 1.00 0.00 N ATOM 142 CA ASN 40 21.480 84.393 10.544 1.00 0.00 C ATOM 143 C ASN 40 21.944 85.809 10.101 1.00 0.00 C ATOM 144 O ASN 40 22.140 86.051 8.901 1.00 0.00 O ATOM 145 N ASP 41 22.130 86.722 11.062 1.00 0.00 N ATOM 146 CA ASP 41 22.710 88.061 10.819 1.00 0.00 C ATOM 147 C ASP 41 24.189 88.136 11.155 1.00 0.00 C ATOM 148 O ASP 41 24.733 89.229 11.379 1.00 0.00 O ATOM 149 N TYR 42 24.827 86.961 11.245 1.00 0.00 N ATOM 150 CA TYR 42 26.257 86.848 11.522 1.00 0.00 C ATOM 151 C TYR 42 26.733 87.341 12.875 1.00 0.00 C ATOM 152 O TYR 42 27.921 87.598 13.045 1.00 0.00 O ATOM 153 N VAL 43 25.806 87.439 13.826 1.00 0.00 N ATOM 154 CA VAL 43 26.119 87.855 15.179 1.00 0.00 C ATOM 155 C VAL 43 26.429 86.649 16.063 1.00 0.00 C ATOM 156 O VAL 43 25.590 85.752 16.188 1.00 0.00 O ATOM 157 N ILE 44 27.613 86.644 16.654 1.00 0.00 N ATOM 158 CA ILE 44 27.979 85.648 17.675 1.00 0.00 C ATOM 159 C ILE 44 27.126 85.962 18.899 1.00 0.00 C ATOM 160 O ILE 44 27.332 86.997 19.565 1.00 0.00 O ATOM 161 N VAL 45 26.126 85.118 19.164 1.00 0.00 N ATOM 162 CA VAL 45 25.141 85.404 20.217 1.00 0.00 C ATOM 163 C VAL 45 25.449 84.713 21.517 1.00 0.00 C ATOM 164 O VAL 45 25.068 85.182 22.586 1.00 0.00 O ATOM 165 N LYS 46 26.057 83.529 21.433 1.00 0.00 N ATOM 166 CA LYS 46 25.948 82.589 22.550 1.00 0.00 C ATOM 167 C LYS 46 27.071 81.571 22.583 1.00 0.00 C ATOM 168 O LYS 46 27.459 81.047 21.532 1.00 0.00 O ATOM 169 N VAL 47 27.571 81.269 23.779 1.00 0.00 N ATOM 170 CA VAL 47 28.362 80.048 23.976 1.00 0.00 C ATOM 171 C VAL 47 28.010 79.497 25.327 1.00 0.00 C ATOM 172 O VAL 47 27.613 80.244 26.215 1.00 0.00 O ATOM 173 N ASN 48 28.077 78.180 25.470 1.00 0.00 N ATOM 174 CA ASN 48 27.599 77.558 26.707 1.00 0.00 C ATOM 175 C ASN 48 28.630 77.744 27.828 1.00 0.00 C ATOM 176 O ASN 48 29.735 78.226 27.588 1.00 0.00 O ATOM 177 N GLU 49 28.241 77.413 29.051 1.00 0.00 N ATOM 178 CA GLU 49 29.183 77.445 30.173 1.00 0.00 C ATOM 179 C GLU 49 29.517 75.998 30.576 1.00 0.00 C ATOM 180 O GLU 49 28.993 75.481 31.574 1.00 0.00 O ATOM 181 N TYR 50 30.383 75.324 29.821 1.00 0.00 N ATOM 182 N TYR 50 30.362 75.367 29.774 1.00 0.00 N ATOM 183 CA TYR 50 30.626 73.896 30.107 1.00 0.00 C ATOM 184 CA TYR 50 30.698 73.966 29.943 1.00 0.00 C ATOM 185 C TYR 50 32.021 73.521 30.642 1.00 0.00 C ATOM 186 C TYR 50 31.914 73.839 30.852 1.00 0.00 C ATOM 187 O TYR 50 32.156 72.469 31.284 1.00 0.00 O ATOM 188 O TYR 50 31.826 73.321 31.966 1.00 0.00 O ATOM 189 N PHE 51 33.038 74.350 30.368 1.00 0.00 N ATOM 190 CA PHE 51 34.346 74.250 31.057 1.00 0.00 C ATOM 191 C PHE 51 34.860 75.630 31.435 1.00 0.00 C ATOM 192 O PHE 51 34.479 76.622 30.802 1.00 0.00 O ATOM 193 N GLU 52 35.726 75.715 32.472 1.00 0.00 N ATOM 194 CA GLU 52 36.182 77.042 32.901 1.00 0.00 C ATOM 195 C GLU 52 36.872 77.799 31.780 1.00 0.00 C ATOM 196 O GLU 52 37.546 77.190 30.938 1.00 0.00 O ATOM 197 N SER 53 36.695 79.118 31.779 1.00 0.00 N ATOM 198 CA SER 53 37.141 79.996 30.685 1.00 0.00 C ATOM 199 C SER 53 38.576 79.752 30.230 1.00 0.00 C ATOM 200 O SER 53 38.876 79.832 29.035 1.00 0.00 O ATOM 201 N ARG 54 39.455 79.441 31.184 1.00 0.00 N ATOM 202 CA ARG 54 40.874 79.214 30.897 1.00 0.00 C ATOM 203 C ARG 54 41.200 77.867 30.233 1.00 0.00 C ATOM 204 O ARG 54 42.295 77.691 29.696 1.00 0.00 O ATOM 205 N VAL 55 38.990 74.867 24.436 1.00 0.00 N ATOM 206 CA VAL 55 39.753 74.544 23.228 1.00 0.00 C ATOM 207 C VAL 55 39.857 75.820 22.388 1.00 0.00 C ATOM 208 O VAL 55 40.955 76.232 21.984 1.00 0.00 O ATOM 209 N ILE 56 38.704 76.454 22.164 1.00 0.00 N ATOM 210 CA ILE 56 38.609 77.686 21.387 1.00 0.00 C ATOM 211 C ILE 56 38.097 78.747 22.331 1.00 0.00 C ATOM 212 O ILE 56 36.901 78.819 22.611 1.00 0.00 O ATOM 213 N PHE 57 39.018 79.558 22.829 1.00 0.00 N ATOM 214 CA PHE 57 38.676 80.553 23.822 1.00 0.00 C ATOM 215 C PHE 57 37.605 81.496 23.293 1.00 0.00 C ATOM 216 O PHE 57 37.710 81.994 22.172 1.00 0.00 O ATOM 217 N ASP 58 36.569 81.699 24.099 1.00 0.00 N ATOM 218 CA ASP 58 35.581 82.733 23.835 1.00 0.00 C ATOM 219 C ASP 58 35.530 83.578 25.094 1.00 0.00 C ATOM 220 O ASP 58 35.792 83.075 26.192 1.00 0.00 O ATOM 229 N THR 61 33.085 89.444 26.030 1.00 0.00 N ATOM 230 CA THR 61 33.280 90.682 25.270 1.00 0.00 C ATOM 231 C THR 61 32.925 90.487 23.809 1.00 0.00 C ATOM 232 O THR 61 32.513 91.428 23.120 1.00 0.00 O ATOM 233 N MET 62 33.069 89.241 23.347 1.00 0.00 N ATOM 234 CA MET 62 32.808 88.885 21.964 1.00 0.00 C ATOM 235 C MET 62 31.323 88.743 21.660 1.00 0.00 C ATOM 236 O MET 62 30.913 88.904 20.524 1.00 0.00 O ATOM 237 N GLN 63 30.513 88.472 22.680 1.00 0.00 N ATOM 238 CA GLN 63 29.067 88.292 22.511 1.00 0.00 C ATOM 239 C GLN 63 28.396 89.547 21.973 1.00 0.00 C ATOM 240 O GLN 63 28.666 90.656 22.462 1.00 0.00 O ATOM 241 N GLY 64 27.511 89.367 20.988 1.00 0.00 N ATOM 242 CA GLY 64 26.792 90.477 20.363 1.00 0.00 C ATOM 243 C GLY 64 27.528 91.053 19.170 1.00 0.00 C ATOM 244 O GLY 64 26.961 91.861 18.425 1.00 0.00 O ATOM 245 N LYS 65 28.782 90.644 18.985 1.00 0.00 N ATOM 246 CA LYS 65 29.612 91.111 17.877 1.00 0.00 C ATOM 247 C LYS 65 29.433 90.266 16.626 1.00 0.00 C ATOM 248 O LYS 65 29.195 89.051 16.717 1.00 0.00 O ATOM 249 N ASN 66 29.548 90.910 15.458 1.00 0.00 N ATOM 250 CA ASN 66 29.600 90.196 14.189 1.00 0.00 C ATOM 251 C ASN 66 30.761 89.206 14.219 1.00 0.00 C ATOM 252 O ASN 66 31.810 89.473 14.823 1.00 0.00 O ATOM 253 N ILE 67 30.562 88.049 13.593 1.00 0.00 N ATOM 254 CA ILE 67 31.553 86.968 13.620 1.00 0.00 C ATOM 255 C ILE 67 32.911 87.408 13.066 1.00 0.00 C ATOM 256 O ILE 67 33.956 86.897 13.464 1.00 0.00 O ATOM 257 N LEU 68 32.878 88.386 12.174 1.00 0.00 N ATOM 258 CA LEU 68 34.084 88.903 11.543 1.00 0.00 C ATOM 259 C LEU 68 35.027 89.619 12.516 1.00 0.00 C ATOM 260 O LEU 68 36.179 89.878 12.189 1.00 0.00 O ATOM 261 N GLU 69 34.546 89.897 13.728 1.00 0.00 N ATOM 262 CA GLU 69 35.368 90.483 14.786 1.00 0.00 C ATOM 263 C GLU 69 35.823 89.444 15.820 1.00 0.00 C ATOM 264 O GLU 69 36.550 89.772 16.765 1.00 0.00 O ATOM 265 N LEU 70 35.399 88.197 15.633 1.00 0.00 N ATOM 266 CA LEU 70 35.605 87.151 16.631 1.00 0.00 C ATOM 267 C LEU 70 36.745 86.203 16.316 1.00 0.00 C ATOM 268 O LEU 70 37.010 85.280 17.094 1.00 0.00 O ATOM 269 N PHE 71 37.403 86.424 15.178 1.00 0.00 N ATOM 270 CA PHE 71 38.521 85.586 14.735 1.00 0.00 C ATOM 271 C PHE 71 39.610 86.454 14.100 1.00 0.00 C ATOM 272 O PHE 71 39.299 87.466 13.467 1.00 0.00 O ATOM 273 N PRO 72 40.886 86.049 14.244 1.00 0.00 N ATOM 274 CA PRO 72 41.965 86.714 13.507 1.00 0.00 C ATOM 275 C PRO 72 41.758 86.521 12.002 1.00 0.00 C ATOM 276 O PRO 72 41.106 85.550 11.610 1.00 0.00 O ATOM 277 N GLU 73 42.303 87.430 11.168 1.00 0.00 N ATOM 278 CA GLU 73 42.129 87.395 9.706 1.00 0.00 C ATOM 279 C GLU 73 42.269 86.011 9.046 1.00 0.00 C ATOM 280 O GLU 73 41.438 85.648 8.209 1.00 0.00 O ATOM 281 N SER 74 43.295 85.246 9.424 1.00 0.00 N ATOM 282 CA SER 74 43.601 83.978 8.743 1.00 0.00 C ATOM 283 C SER 74 42.603 82.854 9.085 1.00 0.00 C ATOM 284 O SER 74 42.210 82.058 8.213 1.00 0.00 O ATOM 285 N ALA 75 42.195 82.803 10.349 1.00 0.00 N ATOM 286 CA ALA 75 41.100 81.933 10.779 1.00 0.00 C ATOM 287 C ALA 75 39.784 82.367 10.112 1.00 0.00 C ATOM 288 O ALA 75 39.032 81.532 9.616 1.00 0.00 O ATOM 289 N ASP 76 39.524 83.675 10.086 1.00 0.00 N ATOM 290 CA ASP 76 38.260 84.209 9.551 1.00 0.00 C ATOM 291 C ASP 76 37.940 83.830 8.096 1.00 0.00 C ATOM 292 O ASP 76 36.791 83.518 7.779 1.00 0.00 O ATOM 293 N TYR 77 38.939 83.856 7.213 1.00 0.00 N ATOM 294 CA TYR 77 38.702 83.503 5.795 1.00 0.00 C ATOM 295 C TYR 77 38.145 82.078 5.635 1.00 0.00 C ATOM 296 O TYR 77 37.244 81.838 4.820 1.00 0.00 O ATOM 297 N LEU 78 38.684 81.152 6.422 1.00 0.00 N ATOM 298 CA LEU 78 38.211 79.771 6.431 1.00 0.00 C ATOM 299 C LEU 78 36.811 79.670 7.048 1.00 0.00 C ATOM 300 O LEU 78 35.941 78.966 6.524 1.00 0.00 O ATOM 301 N LYS 79 36.600 80.371 8.162 1.00 0.00 N ATOM 302 CA LYS 79 35.282 80.416 8.804 1.00 0.00 C ATOM 303 C LYS 79 34.222 80.911 7.800 1.00 0.00 C ATOM 304 O LYS 79 33.142 80.339 7.703 1.00 0.00 O ATOM 305 N ARG 80 34.538 81.951 7.031 1.00 0.00 N ATOM 306 CA ARG 80 33.575 82.487 6.071 1.00 0.00 C ATOM 307 C ARG 80 33.169 81.454 5.012 1.00 0.00 C ATOM 308 O ARG 80 31.993 81.367 4.650 1.00 0.00 O ATOM 309 N LYS 81 34.139 80.684 4.511 1.00 0.00 N ATOM 310 CA LYS 81 33.849 79.687 3.476 1.00 0.00 C ATOM 311 C LYS 81 32.959 78.577 4.043 1.00 0.00 C ATOM 312 O LYS 81 32.073 78.077 3.344 1.00 0.00 O ATOM 313 N ILE 82 33.238 78.187 5.288 1.00 0.00 N ATOM 314 CA ILE 82 32.379 77.220 5.993 1.00 0.00 C ATOM 315 C ILE 82 30.951 77.763 6.087 1.00 0.00 C ATOM 316 O ILE 82 29.983 77.056 5.783 1.00 0.00 O ATOM 317 N ASP 83 30.808 79.009 6.531 1.00 0.00 N ATOM 318 CA ASP 83 29.449 79.591 6.706 1.00 0.00 C ATOM 319 C ASP 83 28.705 79.635 5.382 1.00 0.00 C ATOM 320 O ASP 83 27.507 79.396 5.328 1.00 0.00 O ATOM 321 N THR 84 29.426 79.925 4.299 1.00 0.00 N ATOM 322 CA THR 84 28.791 79.964 2.993 1.00 0.00 C ATOM 323 C THR 84 28.246 78.598 2.543 1.00 0.00 C ATOM 324 O THR 84 27.123 78.507 2.018 1.00 0.00 O ATOM 325 N ALA 85 29.038 77.554 2.736 1.00 0.00 N ATOM 326 CA ALA 85 28.654 76.186 2.377 1.00 0.00 C ATOM 327 C ALA 85 27.395 75.792 3.127 1.00 0.00 C ATOM 328 O ALA 85 26.481 75.205 2.559 1.00 0.00 O ATOM 329 N LEU 86 27.373 76.080 4.429 1.00 0.00 N ATOM 330 CA LEU 86 26.227 75.712 5.268 1.00 0.00 C ATOM 331 C LEU 86 24.970 76.488 4.891 1.00 0.00 C ATOM 332 O LEU 86 23.900 75.907 4.773 1.00 0.00 O ATOM 333 N VAL 87 25.107 77.806 4.751 1.00 0.00 N ATOM 334 CA VAL 87 23.958 78.644 4.447 1.00 0.00 C ATOM 335 C VAL 87 23.356 78.276 3.083 1.00 0.00 C ATOM 336 O VAL 87 22.146 78.178 2.935 1.00 0.00 O ATOM 337 N ILE 88 24.215 78.002 2.096 1.00 0.00 N ATOM 338 CA ILE 88 23.700 77.605 0.781 1.00 0.00 C ATOM 339 C ILE 88 23.141 76.183 0.675 1.00 0.00 C ATOM 340 O ILE 88 22.564 75.799 -0.358 1.00 0.00 O ATOM 341 N GLU 89 23.277 75.405 1.751 1.00 0.00 N ATOM 342 CA GLU 89 22.699 74.087 1.793 1.00 0.00 C ATOM 343 C GLU 89 23.510 73.082 0.979 1.00 0.00 C ATOM 344 O GLU 89 22.988 72.064 0.579 1.00 0.00 O ATOM 345 N SER 90 24.779 73.393 0.743 1.00 0.00 N ATOM 346 CA SER 90 25.696 72.459 0.102 1.00 0.00 C ATOM 347 C SER 90 26.071 71.305 1.021 1.00 0.00 C ATOM 348 O SER 90 26.197 70.163 0.578 1.00 0.00 O ATOM 349 N SER 91 26.230 71.605 2.310 1.00 0.00 N ATOM 350 CA SER 91 26.406 70.559 3.308 1.00 0.00 C ATOM 351 C SER 91 25.622 70.972 4.556 1.00 0.00 C ATOM 352 O SER 91 25.325 72.145 4.727 1.00 0.00 O ATOM 353 N SER 92 25.258 69.992 5.381 1.00 0.00 N ATOM 354 CA SER 92 24.587 70.287 6.645 1.00 0.00 C ATOM 355 C SER 92 25.597 70.436 7.772 1.00 0.00 C ATOM 356 O SER 92 25.302 71.078 8.793 1.00 0.00 O ATOM 401 N GLU 116 46.123 70.447 25.689 1.00 0.00 N ATOM 402 CA GLU 116 44.954 70.162 26.497 1.00 0.00 C ATOM 403 C GLU 116 44.816 68.687 26.846 1.00 0.00 C ATOM 404 O GLU 116 43.917 68.312 27.600 1.00 0.00 O ATOM 405 N GLN 117 45.704 67.862 26.290 1.00 0.00 N ATOM 406 CA GLN 117 45.605 66.407 26.412 1.00 0.00 C ATOM 407 C GLN 117 44.327 65.884 25.769 1.00 0.00 C ATOM 408 O GLN 117 43.714 64.936 26.264 1.00 0.00 O ATOM 409 N MET 118 43.937 66.507 24.662 1.00 0.00 N ATOM 410 CA MET 118 42.659 66.216 24.008 1.00 0.00 C ATOM 411 C MET 118 42.909 65.922 22.547 1.00 0.00 C ATOM 412 O MET 118 43.860 66.448 21.943 1.00 0.00 O ATOM 413 N TYR 119 42.061 65.081 21.975 1.00 0.00 N ATOM 414 CA TYR 119 41.975 64.977 20.545 1.00 0.00 C ATOM 415 C TYR 119 40.645 65.613 20.185 1.00 0.00 C ATOM 416 O TYR 119 39.602 65.120 20.575 1.00 0.00 O ATOM 417 N GLN 120 40.705 66.709 19.444 1.00 0.00 N ATOM 418 CA GLN 120 39.548 67.584 19.297 1.00 0.00 C ATOM 419 C GLN 120 38.799 67.275 18.012 1.00 0.00 C ATOM 420 O GLN 120 39.410 67.148 16.944 1.00 0.00 O ATOM 421 N ASN 121 37.471 67.153 18.106 1.00 0.00 N ATOM 422 CA ASN 121 36.640 66.975 16.919 1.00 0.00 C ATOM 423 C ASN 121 35.655 68.140 16.867 1.00 0.00 C ATOM 424 O ASN 121 34.920 68.375 17.838 1.00 0.00 O ATOM 425 N LEU 122 35.656 68.867 15.745 1.00 0.00 N ATOM 426 CA LEU 122 34.932 70.129 15.616 1.00 0.00 C ATOM 427 C LEU 122 33.848 69.937 14.585 1.00 0.00 C ATOM 428 O LEU 122 34.086 69.371 13.520 1.00 0.00 O ATOM 429 N GLU 123 32.648 70.402 14.902 1.00 0.00 N ATOM 430 CA GLU 123 31.598 70.400 13.885 1.00 0.00 C ATOM 431 C GLU 123 30.980 71.777 13.758 1.00 0.00 C ATOM 432 O GLU 123 30.653 72.408 14.760 1.00 0.00 O ATOM 433 N VAL 124 30.822 72.232 12.515 1.00 0.00 N ATOM 434 CA VAL 124 30.005 73.399 12.198 1.00 0.00 C ATOM 435 C VAL 124 28.779 72.893 11.496 1.00 0.00 C ATOM 436 O VAL 124 28.894 72.196 10.462 1.00 0.00 O ATOM 437 N ILE 125 27.599 73.222 12.030 1.00 0.00 N ATOM 438 CA ILE 125 26.361 72.705 11.502 1.00 0.00 C ATOM 439 C ILE 125 25.391 73.797 11.126 1.00 0.00 C ATOM 440 O ILE 125 25.293 74.786 11.833 1.00 0.00 O ATOM 441 N PRO 126 24.648 73.610 10.029 1.00 0.00 N ATOM 442 CA PRO 126 23.589 74.552 9.655 1.00 0.00 C ATOM 443 C PRO 126 22.422 74.305 10.582 1.00 0.00 C ATOM 444 O PRO 126 22.031 73.136 10.795 1.00 0.00 O ATOM 445 N ILE 127 21.910 75.375 11.180 1.00 0.00 N ATOM 446 CA ILE 127 20.685 75.243 11.995 1.00 0.00 C ATOM 447 C ILE 127 19.518 75.648 11.090 1.00 0.00 C ATOM 448 O ILE 127 19.475 76.784 10.599 1.00 0.00 O ATOM 449 N HIS 128 18.612 74.711 10.837 1.00 0.00 N ATOM 450 CA HIS 128 17.444 74.956 9.961 1.00 0.00 C ATOM 451 C HIS 128 16.171 74.581 10.679 1.00 0.00 C ATOM 452 O HIS 128 16.148 73.625 11.443 1.00 0.00 O ATOM 453 N SER 129 15.092 75.312 10.407 1.00 0.00 N ATOM 454 CA SER 129 13.782 74.935 10.963 1.00 0.00 C ATOM 455 C SER 129 13.114 73.803 10.142 1.00 0.00 C ATOM 456 O SER 129 13.711 73.306 9.193 1.00 0.00 O ATOM 457 N GLU 130 11.904 73.370 10.503 1.00 0.00 N ATOM 458 N GLU 130 11.903 73.393 10.528 1.00 0.00 N ATOM 459 CA GLU 130 11.291 72.247 9.772 1.00 0.00 C ATOM 460 CA GLU 130 11.199 72.312 9.829 1.00 0.00 C ATOM 461 C GLU 130 10.918 72.587 8.322 1.00 0.00 C ATOM 462 C GLU 130 11.091 72.610 8.329 1.00 0.00 C ATOM 463 O GLU 130 10.716 71.690 7.507 1.00 0.00 O ATOM 464 O GLU 130 11.282 71.721 7.492 1.00 0.00 O ATOM 465 N ASP 131 10.844 73.877 8.009 1.00 0.00 N ATOM 466 CA ASP 131 10.616 74.336 6.616 1.00 0.00 C ATOM 467 C ASP 131 11.886 74.245 5.770 1.00 0.00 C ATOM 468 O ASP 131 11.809 74.283 4.547 1.00 0.00 O ATOM 469 N GLY 132 13.047 74.171 6.420 1.00 0.00 N ATOM 470 CA GLY 132 14.334 74.135 5.720 1.00 0.00 C ATOM 471 C GLY 132 14.995 75.490 5.639 1.00 0.00 C ATOM 472 O GLY 132 16.012 75.647 4.973 1.00 0.00 O ATOM 473 N THR 133 14.438 76.478 6.347 1.00 0.00 N ATOM 474 CA THR 133 14.996 77.813 6.345 1.00 0.00 C ATOM 475 C THR 133 16.184 78.009 7.306 1.00 0.00 C ATOM 476 O THR 133 16.238 77.403 8.380 1.00 0.00 O ATOM 477 N ILE 134 17.117 78.870 6.923 1.00 0.00 N ATOM 478 CA ILE 134 18.407 79.011 7.623 1.00 0.00 C ATOM 479 C ILE 134 18.266 79.883 8.870 1.00 0.00 C ATOM 480 O ILE 134 17.784 81.007 8.790 1.00 0.00 O ATOM 481 N GLU 135 18.689 79.349 10.020 1.00 0.00 N ATOM 482 CA GLU 135 18.589 80.069 11.293 1.00 0.00 C ATOM 483 C GLU 135 19.938 80.414 11.933 1.00 0.00 C ATOM 484 O GLU 135 19.992 81.140 12.940 1.00 0.00 O ATOM 485 N HIS 136 21.026 79.924 11.355 1.00 0.00 N ATOM 486 CA HIS 136 22.356 80.286 11.841 1.00 0.00 C ATOM 487 C HIS 136 23.293 79.103 11.805 1.00 0.00 C ATOM 488 O HIS 136 22.975 78.066 11.212 1.00 0.00 O ATOM 489 N VAL 137 24.460 79.276 12.424 1.00 0.00 N ATOM 490 CA VAL 137 25.444 78.184 12.434 1.00 0.00 C ATOM 491 C VAL 137 25.742 77.774 13.872 1.00 0.00 C ATOM 492 O VAL 137 26.022 78.630 14.712 1.00 0.00 O ATOM 493 N CYS 138 25.666 76.464 14.123 1.00 0.00 N ATOM 494 CA CYS 138 25.949 75.880 15.439 1.00 0.00 C ATOM 495 C CYS 138 27.335 75.242 15.376 1.00 0.00 C ATOM 496 O CYS 138 27.555 74.368 14.533 1.00 0.00 O ATOM 497 N LEU 139 28.258 75.658 16.250 1.00 0.00 N ATOM 498 CA LEU 139 29.571 75.013 16.343 1.00 0.00 C ATOM 499 C LEU 139 29.649 74.242 17.655 1.00 0.00 C ATOM 500 O LEU 139 29.279 74.775 18.710 1.00 0.00 O ATOM 501 N CYS 140 30.073 72.985 17.590 1.00 0.00 N ATOM 502 CA CYS 140 30.281 72.221 18.809 1.00 0.00 C ATOM 503 C CYS 140 31.582 71.435 18.737 1.00 0.00 C ATOM 504 O CYS 140 31.957 70.853 17.673 1.00 0.00 O ATOM 505 N VAL 141 32.295 71.476 19.856 1.00 0.00 N ATOM 506 CA VAL 141 33.633 70.923 19.940 1.00 0.00 C ATOM 507 C VAL 141 33.623 69.826 21.010 1.00 0.00 C ATOM 508 O VAL 141 33.135 70.042 22.125 1.00 0.00 O ATOM 509 N TYR 142 34.199 68.672 20.672 1.00 0.00 N ATOM 510 CA TYR 142 34.226 67.552 21.614 1.00 0.00 C ATOM 511 C TYR 142 35.626 66.969 21.733 1.00 0.00 C ATOM 512 O TYR 142 36.379 66.922 20.765 1.00 0.00 O ATOM 513 N ASP 143 35.965 66.500 22.930 1.00 0.00 N ATOM 514 CA ASP 143 37.190 65.729 23.068 1.00 0.00 C ATOM 515 C ASP 143 36.825 64.254 22.818 1.00 0.00 C ATOM 516 O ASP 143 35.977 63.655 23.509 1.00 0.00 O ATOM 517 N VAL 144 37.465 63.672 21.812 1.00 0.00 N ATOM 518 CA VAL 144 37.160 62.290 21.462 1.00 0.00 C ATOM 519 C VAL 144 38.267 61.308 21.862 1.00 0.00 C ATOM 520 O VAL 144 38.125 60.087 21.667 1.00 0.00 O ATOM 521 N THR 145 39.339 61.830 22.450 1.00 0.00 N ATOM 522 CA THR 145 40.446 60.978 22.918 1.00 0.00 C ATOM 523 C THR 145 39.983 59.824 23.824 1.00 0.00 C ATOM 524 O THR 145 40.460 58.692 23.641 1.00 0.00 O ATOM 525 N ILE 146 39.065 60.088 24.790 1.00 0.00 N ATOM 526 CA ILE 146 38.553 59.014 25.658 1.00 0.00 C ATOM 527 C ILE 146 37.961 57.822 24.919 1.00 0.00 C ATOM 528 O ILE 146 38.042 56.701 25.434 1.00 0.00 O ATOM 529 N GLN 147 37.410 58.043 23.725 1.00 0.00 N ATOM 530 CA GLN 147 36.751 56.972 22.968 1.00 0.00 C ATOM 531 C GLN 147 37.739 56.007 22.328 1.00 0.00 C ATOM 532 O GLN 147 37.371 54.876 21.997 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 368 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 51.19 75.0 128 70.7 181 ARMSMC SECONDARY STRUCTURE . . 45.24 85.9 71 67.6 105 ARMSMC SURFACE . . . . . . . . 52.33 73.2 82 65.6 125 ARMSMC BURIED . . . . . . . . 49.09 78.3 46 82.1 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 67 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 22 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.86 (Number of atoms: 92) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.86 92 98.9 93 CRMSCA CRN = ALL/NP . . . . . 0.0420 CRMSCA SECONDARY STRUCTURE . . 2.82 52 96.3 54 CRMSCA SURFACE . . . . . . . . 4.32 63 98.4 64 CRMSCA BURIED . . . . . . . . 2.58 29 100.0 29 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.69 368 79.5 463 CRMSMC SECONDARY STRUCTURE . . 2.64 208 77.0 270 CRMSMC SURFACE . . . . . . . . 4.17 252 79.2 318 CRMSMC BURIED . . . . . . . . 2.35 116 80.0 145 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 364 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 308 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 214 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 258 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 106 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.69 368 50.0 736 CRMSALL SECONDARY STRUCTURE . . 2.64 208 48.4 430 CRMSALL SURFACE . . . . . . . . 4.17 252 49.0 514 CRMSALL BURIED . . . . . . . . 2.35 116 52.3 222 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.119 1.000 0.500 92 98.9 93 ERRCA SECONDARY STRUCTURE . . 2.333 1.000 0.500 52 96.3 54 ERRCA SURFACE . . . . . . . . 3.617 1.000 0.500 63 98.4 64 ERRCA BURIED . . . . . . . . 2.038 1.000 0.500 29 100.0 29 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.007 1.000 0.500 368 79.5 463 ERRMC SECONDARY STRUCTURE . . 2.208 1.000 0.500 208 77.0 270 ERRMC SURFACE . . . . . . . . 3.511 1.000 0.500 252 79.2 318 ERRMC BURIED . . . . . . . . 1.912 1.000 0.500 116 80.0 145 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 364 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 308 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 214 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 258 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 106 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.007 1.000 0.500 368 50.0 736 ERRALL SECONDARY STRUCTURE . . 2.208 1.000 0.500 208 48.4 430 ERRALL SURFACE . . . . . . . . 3.511 1.000 0.500 252 49.0 514 ERRALL BURIED . . . . . . . . 1.912 1.000 0.500 116 52.3 222 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 11 37 55 71 88 90 93 DISTCA CA (P) 11.83 39.78 59.14 76.34 94.62 93 DISTCA CA (RMS) 0.67 1.25 1.75 2.44 3.55 DISTCA ALL (N) 52 156 222 299 357 360 736 DISTALL ALL (P) 7.07 21.20 30.16 40.62 48.51 736 DISTALL ALL (RMS) 0.69 1.30 1.74 2.54 3.55 DISTALL END of the results output