####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 87 ( 348), selected 87 , name T0536AL285_1-D1 # Molecule2: number of CA atoms 93 ( 736), selected 87 , name T0536-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0536AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 87 33 - 145 2.14 2.14 LCS_AVERAGE: 93.55 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 57 33 - 91 1.83 2.16 LCS_AVERAGE: 50.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 119 - 145 0.81 2.84 LCS_AVERAGE: 22.19 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 87 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 33 F 33 25 57 87 4 13 43 63 76 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT A 34 A 34 25 57 87 11 41 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 35 L 35 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT C 36 C 36 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 37 I 37 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 38 V 38 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT R 39 R 39 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT N 40 N 40 25 57 87 14 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT D 41 D 41 25 57 87 20 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Y 42 Y 42 25 57 87 11 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 43 V 43 25 57 87 6 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 44 I 44 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 45 V 45 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT K 46 K 46 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 47 V 47 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT N 48 N 48 25 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 49 E 49 25 57 87 16 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Y 50 Y 50 25 57 87 15 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT F 51 F 51 25 57 87 12 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 52 E 52 25 57 87 7 42 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT S 53 S 53 25 57 87 6 29 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT R 54 R 54 25 57 87 6 29 57 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 55 V 55 25 57 87 4 11 41 65 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 56 I 56 25 57 87 3 4 27 65 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT F 57 F 57 25 57 87 3 16 57 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT D 58 D 58 25 57 87 8 18 56 70 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT T 61 T 61 14 57 87 4 16 33 60 73 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT M 62 M 62 14 57 87 6 24 52 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Q 63 Q 63 14 57 87 9 39 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT G 64 G 64 14 57 87 8 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT K 65 K 65 14 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT N 66 N 66 14 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 67 I 67 14 57 87 16 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 68 L 68 14 57 87 14 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 69 E 69 14 57 87 16 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 70 L 70 14 57 87 13 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT F 71 F 71 14 57 87 13 39 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT P 72 P 72 14 57 87 13 37 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 73 E 73 14 57 87 12 39 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT S 74 S 74 14 57 87 11 39 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT A 75 A 75 14 57 87 4 12 15 39 59 73 80 83 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT D 76 D 76 14 57 87 8 21 49 69 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Y 77 Y 77 14 57 87 10 14 29 60 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 78 L 78 14 57 87 10 16 37 65 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT K 79 K 79 14 57 87 10 28 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT R 80 R 80 14 57 87 10 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT K 81 K 81 14 57 87 10 42 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 82 I 82 14 57 87 16 39 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT D 83 D 83 14 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT T 84 T 84 14 57 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT A 85 A 85 14 57 87 10 38 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 86 L 86 14 57 87 10 24 56 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 87 V 87 14 57 87 6 16 47 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 88 I 88 14 57 87 3 8 14 16 30 61 77 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 89 E 89 3 57 87 3 14 24 50 64 77 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT S 90 S 90 3 57 87 0 14 32 54 69 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT S 91 S 91 3 57 87 1 18 37 55 66 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 116 E 116 5 8 87 4 6 6 7 9 12 12 44 67 74 79 85 86 87 87 87 87 87 87 87 LCS_GDT Q 117 Q 117 5 29 87 4 6 6 8 23 49 73 82 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT M 118 M 118 5 29 87 4 6 10 26 64 77 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Y 119 Y 119 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Q 120 Q 120 27 29 87 10 38 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT N 121 N 121 27 29 87 8 37 56 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 122 L 122 27 29 87 8 37 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 123 E 123 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 124 V 124 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 125 I 125 27 29 87 12 38 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT P 126 P 126 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 127 I 127 27 29 87 11 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT H 128 H 128 27 29 87 6 39 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT S 129 S 129 27 29 87 11 42 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 130 E 130 27 29 87 11 42 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT D 131 D 131 27 29 87 10 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT G 132 G 132 27 29 87 12 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT T 133 T 133 27 29 87 18 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT I 134 I 134 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT E 135 E 135 27 29 87 13 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT H 136 H 136 27 29 87 4 28 54 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 137 V 137 27 29 87 16 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT C 138 C 138 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT L 139 L 139 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT C 140 C 140 27 29 87 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 141 V 141 27 29 87 17 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT Y 142 Y 142 27 29 87 7 40 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT D 143 D 143 27 29 87 11 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT V 144 V 144 27 29 87 14 42 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_GDT T 145 T 145 27 29 87 0 38 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 LCS_AVERAGE LCS_A: 55.46 ( 22.19 50.65 93.55 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 22 43 58 71 77 79 82 84 85 86 86 86 86 87 87 87 87 87 87 87 GDT PERCENT_AT 23.66 46.24 62.37 76.34 82.80 84.95 88.17 90.32 91.40 92.47 92.47 92.47 92.47 93.55 93.55 93.55 93.55 93.55 93.55 93.55 GDT RMS_LOCAL 0.36 0.66 0.86 1.10 1.27 1.34 1.51 1.63 1.69 1.82 1.82 1.82 1.82 2.14 2.14 2.14 2.14 2.14 2.14 2.14 GDT RMS_ALL_AT 2.25 2.18 2.22 2.20 2.22 2.22 2.20 2.18 2.19 2.16 2.16 2.16 2.16 2.14 2.14 2.14 2.14 2.14 2.14 2.14 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 33 F 33 2.872 7 0.084 0.084 3.462 61.190 22.251 LGA A 34 A 34 1.094 1 0.171 0.171 1.745 86.190 68.952 LGA L 35 L 35 0.525 4 0.050 0.050 0.795 92.857 46.429 LGA C 36 C 36 0.523 2 0.099 0.099 0.583 95.238 63.492 LGA I 37 I 37 0.219 4 0.034 0.034 0.302 100.000 50.000 LGA V 38 V 38 0.337 3 0.054 0.054 0.570 97.619 55.782 LGA R 39 R 39 0.324 7 0.064 0.064 0.389 100.000 36.364 LGA N 40 N 40 0.721 4 0.080 0.080 0.721 95.238 47.619 LGA D 41 D 41 0.793 4 0.035 0.035 1.177 88.214 44.107 LGA Y 42 Y 42 0.755 8 0.176 0.176 0.755 92.857 30.952 LGA V 43 V 43 0.827 3 0.128 0.128 0.827 95.238 54.422 LGA I 44 I 44 0.548 4 0.021 0.021 0.791 92.857 46.429 LGA V 45 V 45 0.609 3 0.047 0.047 0.905 92.857 53.061 LGA K 46 K 46 0.232 5 0.043 0.043 0.333 100.000 44.444 LGA V 47 V 47 0.227 3 0.027 0.027 0.337 100.000 57.143 LGA N 48 N 48 0.428 4 0.095 0.095 0.554 97.619 48.810 LGA E 49 E 49 0.690 5 0.041 0.041 0.859 92.857 41.270 LGA Y 50 Y 50 0.837 8 0.042 0.042 0.956 90.476 30.159 LGA F 51 F 51 0.937 7 0.061 0.061 1.477 85.952 31.255 LGA E 52 E 52 1.166 5 0.052 0.052 1.429 83.690 37.196 LGA S 53 S 53 1.570 2 0.132 0.132 2.401 72.976 48.651 LGA R 54 R 54 2.019 7 0.183 0.183 2.019 68.810 25.022 LGA V 55 V 55 2.636 3 0.683 0.683 4.095 54.048 30.884 LGA I 56 I 56 2.702 4 0.350 0.350 2.737 59.048 29.524 LGA F 57 F 57 1.822 7 0.627 0.627 2.788 71.310 25.931 LGA D 58 D 58 2.169 4 0.125 0.125 2.736 64.881 32.440 LGA T 61 T 61 3.188 3 0.625 0.625 3.188 61.190 34.966 LGA M 62 M 62 2.005 4 0.121 0.121 2.309 73.095 36.548 LGA Q 63 Q 63 1.225 5 0.029 0.029 1.476 81.429 36.190 LGA G 64 G 64 0.988 0 0.188 0.188 1.679 86.071 86.071 LGA K 65 K 65 0.386 5 0.047 0.047 0.386 100.000 44.444 LGA N 66 N 66 0.474 4 0.054 0.054 0.749 95.238 47.619 LGA I 67 I 67 0.613 4 0.027 0.027 0.720 90.476 45.238 LGA L 68 L 68 1.019 4 0.019 0.019 1.275 83.690 41.845 LGA E 69 E 69 1.136 5 0.055 0.055 1.203 83.690 37.196 LGA L 70 L 70 1.081 4 0.115 0.115 1.651 79.286 39.643 LGA F 71 F 71 1.588 7 0.200 0.200 2.471 72.976 26.537 LGA P 72 P 72 1.844 3 0.205 0.205 2.690 66.905 38.231 LGA E 73 E 73 1.838 5 0.035 0.035 2.042 70.833 31.481 LGA S 74 S 74 1.591 2 0.651 0.651 3.505 63.452 42.302 LGA A 75 A 75 4.579 1 0.540 0.540 4.579 48.929 39.143 LGA D 76 D 76 2.301 4 0.161 0.161 3.130 61.071 30.536 LGA Y 77 Y 77 2.806 8 0.049 0.049 2.806 59.048 19.683 LGA L 78 L 78 2.672 4 0.036 0.036 2.742 62.976 31.488 LGA K 79 K 79 1.648 5 0.052 0.052 2.082 77.381 34.392 LGA R 80 R 80 1.003 7 0.024 0.024 1.174 85.952 31.255 LGA K 81 K 81 1.053 5 0.024 0.024 1.194 88.333 39.259 LGA I 82 I 82 1.198 4 0.039 0.039 1.240 81.429 40.714 LGA D 83 D 83 0.732 4 0.019 0.019 0.853 90.476 45.238 LGA T 84 T 84 0.533 3 0.081 0.081 0.984 92.857 53.061 LGA A 85 A 85 1.255 1 0.041 0.041 2.041 77.381 61.905 LGA L 86 L 86 1.687 4 0.096 0.096 2.020 72.976 36.488 LGA V 87 V 87 1.916 3 0.224 0.224 2.545 66.905 38.231 LGA I 88 I 88 4.259 4 0.065 0.065 4.259 48.571 24.286 LGA E 89 E 89 3.881 5 0.447 0.447 5.561 39.762 17.672 LGA S 90 S 90 3.285 2 0.149 0.149 3.882 48.333 32.222 LGA S 91 S 91 3.931 2 0.176 0.176 4.769 42.024 28.016 LGA E 116 E 116 11.280 5 0.352 0.352 12.499 0.119 0.053 LGA Q 117 Q 117 6.370 5 0.025 0.025 8.078 15.119 6.720 LGA M 118 M 118 4.252 4 0.133 0.133 4.953 45.714 22.857 LGA Y 119 Y 119 0.632 8 0.085 0.085 1.179 88.214 29.405 LGA Q 120 Q 120 1.539 5 0.027 0.027 2.854 66.905 29.735 LGA N 121 N 121 1.973 4 0.061 0.061 1.973 72.857 36.429 LGA L 122 L 122 1.747 4 0.079 0.079 1.839 75.000 37.500 LGA E 123 E 123 0.432 5 0.041 0.041 0.905 97.619 43.386 LGA V 124 V 124 0.358 3 0.036 0.036 0.936 95.238 54.422 LGA I 125 I 125 1.483 4 0.175 0.175 1.483 83.690 41.845 LGA P 126 P 126 0.507 3 0.045 0.045 0.780 90.476 51.701 LGA I 127 I 127 0.775 4 0.231 0.231 1.011 88.214 44.107 LGA H 128 H 128 1.409 6 0.041 0.041 1.554 79.286 31.714 LGA S 129 S 129 1.256 2 0.030 0.030 1.262 81.429 54.286 LGA E 130 E 130 1.348 5 0.134 0.134 1.482 81.429 36.190 LGA D 131 D 131 0.963 4 0.199 0.199 1.045 88.214 44.107 LGA G 132 G 132 0.892 0 0.180 0.180 1.097 88.214 88.214 LGA T 133 T 133 0.655 3 0.036 0.036 0.781 95.238 54.422 LGA I 134 I 134 0.389 4 0.143 0.143 1.584 90.833 45.417 LGA E 135 E 135 0.755 5 0.052 0.052 0.755 95.238 42.328 LGA H 136 H 136 1.868 6 0.169 0.169 1.868 79.286 31.714 LGA V 137 V 137 0.720 3 0.061 0.061 0.937 95.238 54.422 LGA C 138 C 138 0.398 2 0.049 0.049 0.573 97.619 65.079 LGA L 139 L 139 0.276 4 0.050 0.050 0.338 100.000 50.000 LGA C 140 C 140 0.375 2 0.037 0.037 0.402 100.000 66.667 LGA V 141 V 141 0.739 3 0.100 0.100 0.739 90.476 51.701 LGA Y 142 Y 142 1.067 8 0.024 0.024 1.067 85.952 28.651 LGA D 143 D 143 0.657 4 0.060 0.060 0.773 92.857 46.429 LGA V 144 V 144 1.291 3 0.687 0.687 4.540 67.024 38.299 LGA T 145 T 145 1.518 3 0.336 0.336 4.420 58.690 33.537 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 87 348 348 100.00 697 348 49.93 93 SUMMARY(RMSD_GDC): 2.137 2.130 2.130 73.881 38.235 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 87 93 4.0 84 1.63 76.613 73.580 4.853 LGA_LOCAL RMSD: 1.631 Number of atoms: 84 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.177 Number of assigned atoms: 87 Std_ASGN_ATOMS RMSD: 2.137 Standard rmsd on all 87 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.699027 * X + -0.499592 * Y + 0.511634 * Z + 22.882109 Y_new = -0.712497 * X + 0.547529 * Y + -0.438817 * Z + 68.926300 Z_new = -0.060905 * X + -0.671282 * Y + -0.738695 * Z + -1.329551 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.346652 0.060943 -2.403969 [DEG: -134.4533 3.4918 -137.7373 ] ZXZ: 0.861862 2.401929 -3.051111 [DEG: 49.3811 137.6204 -174.8158 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0536AL285_1-D1 REMARK 2: T0536-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0536AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 87 93 4.0 84 1.63 73.580 2.14 REMARK ---------------------------------------------------------- MOLECULE T0536AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3luqA ATOM 45 N PHE 33 28.481 70.749 26.903 1.00 0.00 N ATOM 46 CA PHE 33 29.601 70.752 25.988 1.00 0.00 C ATOM 47 C PHE 33 29.919 72.126 25.429 1.00 0.00 C ATOM 48 O PHE 33 29.294 73.073 25.780 1.00 0.00 O ATOM 49 N ALA 34 30.868 72.243 24.526 1.00 0.00 N ATOM 50 CA ALA 34 31.154 73.542 23.977 1.00 0.00 C ATOM 51 C ALA 34 30.288 73.832 22.768 1.00 0.00 C ATOM 52 O ALA 34 30.464 73.288 21.724 1.00 0.00 O ATOM 53 N LEU 35 29.340 74.725 22.934 1.00 0.00 N ATOM 54 CA LEU 35 28.406 75.016 21.883 1.00 0.00 C ATOM 55 C LEU 35 28.191 76.480 21.723 1.00 0.00 C ATOM 56 O LEU 35 28.164 77.182 22.667 1.00 0.00 O ATOM 57 N CYS 36 28.021 76.929 20.503 1.00 0.00 N ATOM 58 CA CYS 36 27.679 78.305 20.250 1.00 0.00 C ATOM 59 C CYS 36 26.761 78.440 19.051 1.00 0.00 C ATOM 60 O CYS 36 26.717 77.596 18.199 1.00 0.00 O ATOM 61 N ILE 37 26.014 79.520 19.025 1.00 0.00 N ATOM 62 CA ILE 37 25.004 79.765 18.034 1.00 0.00 C ATOM 63 C ILE 37 25.254 81.116 17.421 1.00 0.00 C ATOM 64 O ILE 37 25.493 82.044 18.121 1.00 0.00 O ATOM 65 N VAL 38 25.180 81.211 16.107 1.00 0.00 N ATOM 66 CA VAL 38 25.514 82.422 15.412 1.00 0.00 C ATOM 67 C VAL 38 24.439 82.818 14.457 1.00 0.00 C ATOM 68 O VAL 38 23.683 82.019 14.019 1.00 0.00 O ATOM 69 N ARG 39 24.409 84.093 14.137 1.00 0.00 N ATOM 70 CA ARG 39 23.578 84.622 13.075 1.00 0.00 C ATOM 71 C ARG 39 24.256 84.519 11.739 1.00 0.00 C ATOM 72 O ARG 39 25.318 83.993 11.621 1.00 0.00 O ATOM 73 N ASN 40 23.611 85.051 10.731 1.00 0.00 N ATOM 74 CA ASN 40 24.070 84.963 9.367 1.00 0.00 C ATOM 75 C ASN 40 25.384 85.688 9.182 1.00 0.00 C ATOM 76 O ASN 40 26.067 85.480 8.227 1.00 0.00 O ATOM 77 N ASP 41 25.717 86.563 10.109 1.00 0.00 N ATOM 78 CA ASP 41 26.924 87.355 10.052 1.00 0.00 C ATOM 79 C ASP 41 27.898 86.878 11.077 1.00 0.00 C ATOM 80 O ASP 41 28.846 87.532 11.392 1.00 0.00 O ATOM 81 N TYR 42 27.656 85.696 11.577 1.00 0.00 N ATOM 82 CA TYR 42 28.523 85.093 12.535 1.00 0.00 C ATOM 83 C TYR 42 28.703 85.795 13.842 1.00 0.00 C ATOM 84 O TYR 42 29.757 85.787 14.379 1.00 0.00 O ATOM 85 N VAL 43 27.653 86.362 14.387 1.00 0.00 N ATOM 86 CA VAL 43 27.762 87.047 15.644 1.00 0.00 C ATOM 87 C VAL 43 27.040 86.230 16.620 1.00 0.00 C ATOM 88 O VAL 43 26.104 85.583 16.269 1.00 0.00 O ATOM 89 N ILE 44 27.466 86.298 17.864 1.00 0.00 N ATOM 90 CA ILE 44 26.965 85.417 18.885 1.00 0.00 C ATOM 91 C ILE 44 25.510 85.615 19.176 1.00 0.00 C ATOM 92 O ILE 44 25.058 86.690 19.411 1.00 0.00 O ATOM 93 N VAL 45 24.781 84.527 19.134 1.00 0.00 N ATOM 94 CA VAL 45 23.453 84.493 19.616 1.00 0.00 C ATOM 95 C VAL 45 23.417 83.798 20.955 1.00 0.00 C ATOM 96 O VAL 45 22.660 84.166 21.803 1.00 0.00 O ATOM 97 N LYS 46 24.211 82.752 21.126 1.00 0.00 N ATOM 98 CA LYS 46 24.250 82.040 22.387 1.00 0.00 C ATOM 99 C LYS 46 25.548 81.330 22.626 1.00 0.00 C ATOM 100 O LYS 46 26.154 80.890 21.716 1.00 0.00 O ATOM 101 N VAL 47 25.959 81.213 23.870 1.00 0.00 N ATOM 102 CA VAL 47 27.168 80.492 24.208 1.00 0.00 C ATOM 103 C VAL 47 27.021 79.567 25.388 1.00 0.00 C ATOM 104 O VAL 47 26.447 79.937 26.360 1.00 0.00 O ATOM 105 N ASN 48 27.586 78.373 25.302 1.00 0.00 N ATOM 106 CA ASN 48 27.720 77.472 26.447 1.00 0.00 C ATOM 107 C ASN 48 28.863 77.860 27.351 1.00 0.00 C ATOM 108 O ASN 48 29.720 78.585 26.957 1.00 0.00 O ATOM 109 N GLU 49 28.868 77.378 28.574 1.00 0.00 N ATOM 110 CA GLU 49 29.962 77.671 29.469 1.00 0.00 C ATOM 111 C GLU 49 31.282 77.139 28.996 1.00 0.00 C ATOM 112 O GLU 49 32.255 77.818 29.074 1.00 0.00 O ATOM 113 N TYR 50 31.308 75.918 28.505 1.00 0.00 N ATOM 114 CA TYR 50 32.550 75.317 28.050 1.00 0.00 C ATOM 115 C TYR 50 33.147 76.083 26.902 1.00 0.00 C ATOM 116 O TYR 50 34.331 76.266 26.851 1.00 0.00 O ATOM 117 N PHE 51 32.300 76.549 26.002 1.00 0.00 N ATOM 118 CA PHE 51 32.723 77.400 24.907 1.00 0.00 C ATOM 119 C PHE 51 33.307 78.711 25.381 1.00 0.00 C ATOM 120 O PHE 51 34.276 79.162 24.850 1.00 0.00 O ATOM 121 N GLU 52 32.707 79.333 26.372 1.00 0.00 N ATOM 122 CA GLU 52 33.274 80.539 26.889 1.00 0.00 C ATOM 123 C GLU 52 34.600 80.229 27.469 1.00 0.00 C ATOM 124 O GLU 52 35.520 80.942 27.246 1.00 0.00 O ATOM 125 N SER 53 34.690 79.182 28.263 1.00 0.00 N ATOM 126 CA SER 53 35.965 78.806 28.825 1.00 0.00 C ATOM 127 C SER 53 36.971 78.345 27.803 1.00 0.00 C ATOM 128 O SER 53 38.082 78.799 27.798 1.00 0.00 O ATOM 129 N ARG 54 36.583 77.428 26.941 1.00 0.00 N ATOM 130 CA ARG 54 37.496 76.895 25.968 1.00 0.00 C ATOM 131 C ARG 54 37.987 77.972 25.050 1.00 0.00 C ATOM 132 O ARG 54 39.093 77.938 24.602 1.00 0.00 O ATOM 133 N VAL 55 37.150 78.922 24.735 1.00 0.00 N ATOM 134 CA VAL 55 37.553 79.950 23.821 1.00 0.00 C ATOM 135 C VAL 55 38.066 81.195 24.509 1.00 0.00 C ATOM 136 O VAL 55 38.361 82.171 23.867 1.00 0.00 O ATOM 137 N ILE 56 38.160 81.171 25.819 1.00 0.00 N ATOM 138 CA ILE 56 38.701 82.299 26.538 1.00 0.00 C ATOM 139 C ILE 56 37.990 83.606 26.300 1.00 0.00 C ATOM 140 O ILE 56 38.601 84.645 26.177 1.00 0.00 O ATOM 141 N PHE 57 36.679 83.531 26.199 1.00 0.00 N ATOM 142 CA PHE 57 35.830 84.677 25.993 1.00 0.00 C ATOM 143 C PHE 57 35.749 85.642 27.150 1.00 0.00 C ATOM 144 O PHE 57 35.586 86.824 26.955 1.00 0.00 O ATOM 145 N ASP 58 35.833 85.125 28.357 1.00 0.00 N ATOM 146 CA ASP 58 35.590 85.925 29.528 1.00 0.00 C ATOM 147 C ASP 58 34.125 85.950 29.866 1.00 0.00 C ATOM 148 O ASP 58 33.352 85.232 29.297 1.00 0.00 O ATOM 157 N THR 61 29.401 90.635 28.334 1.00 0.00 N ATOM 158 CA THR 61 28.306 90.367 27.445 1.00 0.00 C ATOM 159 C THR 61 28.867 90.329 26.052 1.00 0.00 C ATOM 160 O THR 61 29.319 91.328 25.541 1.00 0.00 O ATOM 161 N MET 62 28.884 89.157 25.449 1.00 0.00 N ATOM 162 CA MET 62 29.466 89.031 24.141 1.00 0.00 C ATOM 163 C MET 62 28.455 88.821 23.050 1.00 0.00 C ATOM 164 O MET 62 28.776 88.744 21.904 1.00 0.00 O ATOM 165 N GLN 63 27.214 88.739 23.438 1.00 0.00 N ATOM 166 CA GLN 63 26.169 88.525 22.505 1.00 0.00 C ATOM 167 C GLN 63 26.055 89.686 21.552 1.00 0.00 C ATOM 168 O GLN 63 26.142 90.829 21.919 1.00 0.00 O ATOM 169 N GLY 64 25.888 89.351 20.298 1.00 0.00 N ATOM 170 CA GLY 64 25.797 90.292 19.225 1.00 0.00 C ATOM 171 C GLY 64 27.156 90.604 18.691 1.00 0.00 C ATOM 172 O GLY 64 27.274 91.204 17.673 1.00 0.00 O ATOM 173 N LYS 65 28.199 90.199 19.382 1.00 0.00 N ATOM 174 CA LYS 65 29.522 90.414 18.866 1.00 0.00 C ATOM 175 C LYS 65 29.851 89.452 17.772 1.00 0.00 C ATOM 176 O LYS 65 29.503 88.306 17.825 1.00 0.00 O ATOM 177 N ASN 66 30.569 89.932 16.786 1.00 0.00 N ATOM 178 CA ASN 66 31.024 89.091 15.723 1.00 0.00 C ATOM 179 C ASN 66 32.235 88.279 16.102 1.00 0.00 C ATOM 180 O ASN 66 33.154 88.770 16.669 1.00 0.00 O ATOM 181 N ILE 67 32.195 87.007 15.765 1.00 0.00 N ATOM 182 CA ILE 67 33.206 86.035 16.099 1.00 0.00 C ATOM 183 C ILE 67 34.550 86.325 15.469 1.00 0.00 C ATOM 184 O ILE 67 35.584 86.077 16.033 1.00 0.00 O ATOM 185 N LEU 68 34.500 86.773 14.238 1.00 0.00 N ATOM 186 CA LEU 68 35.670 87.140 13.498 1.00 0.00 C ATOM 187 C LEU 68 36.383 88.366 14.059 1.00 0.00 C ATOM 188 O LEU 68 37.588 88.457 13.977 1.00 0.00 O ATOM 189 N GLU 69 35.624 89.331 14.568 1.00 0.00 N ATOM 190 CA GLU 69 36.176 90.485 15.264 1.00 0.00 C ATOM 191 C GLU 69 36.851 90.115 16.560 1.00 0.00 C ATOM 192 O GLU 69 37.905 90.602 16.882 1.00 0.00 O ATOM 193 N LEU 70 36.226 89.255 17.324 1.00 0.00 N ATOM 194 CA LEU 70 36.869 88.794 18.511 1.00 0.00 C ATOM 195 C LEU 70 38.089 88.044 18.089 1.00 0.00 C ATOM 196 O LEU 70 39.118 88.191 18.679 1.00 0.00 O ATOM 197 N PHE 71 37.982 87.227 17.060 1.00 0.00 N ATOM 198 CA PHE 71 39.152 86.555 16.542 1.00 0.00 C ATOM 199 C PHE 71 39.407 86.908 15.100 1.00 0.00 C ATOM 200 O PHE 71 38.814 86.369 14.206 1.00 0.00 O ATOM 201 N PRO 72 40.296 87.857 14.898 1.00 0.00 N ATOM 202 CA PRO 72 40.572 88.409 13.582 1.00 0.00 C ATOM 203 C PRO 72 41.598 87.591 12.865 1.00 0.00 C ATOM 204 O PRO 72 41.945 87.860 11.746 1.00 0.00 O ATOM 205 N GLU 73 42.070 86.574 13.536 1.00 0.00 N ATOM 206 CA GLU 73 43.106 85.741 13.026 1.00 0.00 C ATOM 207 C GLU 73 42.601 84.491 12.387 1.00 0.00 C ATOM 208 O GLU 73 43.360 83.767 11.791 1.00 0.00 O ATOM 209 N SER 74 41.323 84.212 12.561 1.00 0.00 N ATOM 210 CA SER 74 40.793 82.938 12.151 1.00 0.00 C ATOM 211 C SER 74 41.026 82.786 10.673 1.00 0.00 C ATOM 212 O SER 74 40.824 83.697 9.900 1.00 0.00 O ATOM 213 N ALA 75 41.437 81.602 10.286 1.00 0.00 N ATOM 214 CA ALA 75 41.802 81.336 8.924 1.00 0.00 C ATOM 215 C ALA 75 40.672 81.278 7.941 1.00 0.00 C ATOM 216 O ALA 75 39.531 81.243 8.285 1.00 0.00 O ATOM 217 N ASP 76 41.040 81.298 6.679 1.00 0.00 N ATOM 218 CA ASP 76 40.114 81.150 5.575 1.00 0.00 C ATOM 219 C ASP 76 39.514 79.763 5.467 1.00 0.00 C ATOM 220 O ASP 76 38.494 79.581 4.863 1.00 0.00 O ATOM 221 N TYR 77 40.191 78.783 6.023 1.00 0.00 N ATOM 222 CA TYR 77 39.677 77.452 6.036 1.00 0.00 C ATOM 223 C TYR 77 38.401 77.323 6.827 1.00 0.00 C ATOM 224 O TYR 77 37.478 76.693 6.388 1.00 0.00 O ATOM 225 N LEU 78 38.356 77.910 8.005 1.00 0.00 N ATOM 226 CA LEU 78 37.144 77.969 8.787 1.00 0.00 C ATOM 227 C LEU 78 36.038 78.796 8.190 1.00 0.00 C ATOM 228 O LEU 78 34.900 78.478 8.300 1.00 0.00 O ATOM 229 N LYS 79 36.395 79.879 7.562 1.00 0.00 N ATOM 230 CA LYS 79 35.425 80.753 6.988 1.00 0.00 C ATOM 231 C LYS 79 34.644 80.098 5.908 1.00 0.00 C ATOM 232 O LYS 79 33.512 80.410 5.719 1.00 0.00 O ATOM 233 N ARG 80 35.294 79.249 5.146 1.00 0.00 N ATOM 234 CA ARG 80 34.628 78.445 4.149 1.00 0.00 C ATOM 235 C ARG 80 33.668 77.419 4.749 1.00 0.00 C ATOM 236 O ARG 80 32.606 77.199 4.233 1.00 0.00 O ATOM 237 N LYS 81 34.069 76.794 5.841 1.00 0.00 N ATOM 238 CA LYS 81 33.220 75.908 6.591 1.00 0.00 C ATOM 239 C LYS 81 32.043 76.632 7.198 1.00 0.00 C ATOM 240 O LYS 81 30.947 76.176 7.127 1.00 0.00 O ATOM 241 N ILE 82 32.278 77.768 7.811 1.00 0.00 N ATOM 242 CA ILE 82 31.192 78.530 8.356 1.00 0.00 C ATOM 243 C ILE 82 30.306 78.969 7.230 1.00 0.00 C ATOM 244 O ILE 82 29.121 78.990 7.340 1.00 0.00 O ATOM 245 N ASP 83 30.908 79.360 6.138 1.00 0.00 N ATOM 246 CA ASP 83 30.171 79.727 4.961 1.00 0.00 C ATOM 247 C ASP 83 29.400 78.573 4.369 1.00 0.00 C ATOM 248 O ASP 83 28.305 78.734 3.920 1.00 0.00 O ATOM 249 N THR 84 29.988 77.404 4.356 1.00 0.00 N ATOM 250 CA THR 84 29.314 76.260 3.820 1.00 0.00 C ATOM 251 C THR 84 28.088 75.975 4.643 1.00 0.00 C ATOM 252 O THR 84 27.053 75.631 4.132 1.00 0.00 O ATOM 253 N ALA 85 28.231 76.129 5.943 1.00 0.00 N ATOM 254 CA ALA 85 27.163 75.904 6.869 1.00 0.00 C ATOM 255 C ALA 85 26.018 76.832 6.670 1.00 0.00 C ATOM 256 O ALA 85 24.912 76.445 6.763 1.00 0.00 O ATOM 257 N LEU 86 26.307 78.075 6.382 1.00 0.00 N ATOM 258 CA LEU 86 25.290 79.075 6.157 1.00 0.00 C ATOM 259 C LEU 86 24.581 78.876 4.848 1.00 0.00 C ATOM 260 O LEU 86 23.565 79.450 4.598 1.00 0.00 O ATOM 261 N VAL 87 25.110 77.995 4.037 1.00 0.00 N ATOM 262 CA VAL 87 24.493 77.653 2.784 1.00 0.00 C ATOM 263 C VAL 87 23.682 76.379 2.926 1.00 0.00 C ATOM 264 O VAL 87 23.232 75.814 1.959 1.00 0.00 O ATOM 265 N ILE 88 23.466 75.961 4.153 1.00 0.00 N ATOM 266 CA ILE 88 22.685 74.793 4.437 1.00 0.00 C ATOM 267 C ILE 88 23.383 73.492 4.669 1.00 0.00 C ATOM 268 O ILE 88 22.740 72.503 4.804 1.00 0.00 O ATOM 269 N GLU 89 24.688 73.474 4.756 1.00 0.00 N ATOM 270 CA GLU 89 25.336 72.200 4.880 1.00 0.00 C ATOM 271 C GLU 89 25.657 71.812 6.294 1.00 0.00 C ATOM 272 O GLU 89 26.068 72.620 7.078 1.00 0.00 O ATOM 273 N SER 90 25.473 70.537 6.588 1.00 0.00 N ATOM 274 CA SER 90 25.778 69.981 7.873 1.00 0.00 C ATOM 275 C SER 90 27.127 69.357 7.755 1.00 0.00 C ATOM 276 O SER 90 27.312 68.452 6.986 1.00 0.00 O ATOM 277 N SER 91 28.079 69.870 8.513 1.00 0.00 N ATOM 278 CA SER 91 29.436 69.399 8.424 1.00 0.00 C ATOM 279 C SER 91 29.901 68.778 9.720 1.00 0.00 C ATOM 280 O SER 91 29.906 69.390 10.738 1.00 0.00 O ATOM 321 N GLU 116 51.892 72.852 20.365 1.00 0.00 N ATOM 322 CA GLU 116 51.317 71.568 20.717 1.00 0.00 C ATOM 323 C GLU 116 50.109 71.159 19.857 1.00 0.00 C ATOM 324 O GLU 116 49.489 71.984 19.190 1.00 0.00 O ATOM 325 N GLN 117 49.804 69.866 19.893 1.00 0.00 N ATOM 326 CA GLN 117 48.741 69.254 19.107 1.00 0.00 C ATOM 327 C GLN 117 47.461 69.008 19.899 1.00 0.00 C ATOM 328 O GLN 117 47.482 68.701 21.069 1.00 0.00 O ATOM 329 N MET 118 46.343 69.161 19.211 1.00 0.00 N ATOM 330 CA MET 118 45.037 69.020 19.767 1.00 0.00 C ATOM 331 C MET 118 44.362 68.065 18.877 1.00 0.00 C ATOM 332 O MET 118 44.484 68.172 17.711 1.00 0.00 O ATOM 333 N TYR 119 43.611 67.142 19.432 1.00 0.00 N ATOM 334 CA TYR 119 42.798 66.242 18.652 1.00 0.00 C ATOM 335 C TYR 119 41.350 66.631 18.883 1.00 0.00 C ATOM 336 O TYR 119 40.978 66.979 19.979 1.00 0.00 O ATOM 337 N GLN 120 40.548 66.596 17.840 1.00 0.00 N ATOM 338 CA GLN 120 39.277 67.270 17.845 1.00 0.00 C ATOM 339 C GLN 120 38.133 66.515 17.255 1.00 0.00 C ATOM 340 O GLN 120 38.309 65.759 16.355 1.00 0.00 O ATOM 341 N ASN 121 36.936 66.788 17.738 1.00 0.00 N ATOM 342 CA ASN 121 35.714 66.498 17.014 1.00 0.00 C ATOM 343 C ASN 121 34.939 67.772 16.888 1.00 0.00 C ATOM 344 O ASN 121 34.869 68.502 17.814 1.00 0.00 O ATOM 345 N LEU 122 34.371 68.054 15.733 1.00 0.00 N ATOM 346 CA LEU 122 33.574 69.257 15.568 1.00 0.00 C ATOM 347 C LEU 122 32.398 69.123 14.630 1.00 0.00 C ATOM 348 O LEU 122 32.415 68.341 13.747 1.00 0.00 O ATOM 349 N GLU 123 31.369 69.918 14.853 1.00 0.00 N ATOM 350 CA GLU 123 30.243 69.994 13.956 1.00 0.00 C ATOM 351 C GLU 123 29.827 71.428 13.694 1.00 0.00 C ATOM 352 O GLU 123 29.773 72.226 14.591 1.00 0.00 O ATOM 353 N VAL 124 29.556 71.732 12.438 1.00 0.00 N ATOM 354 CA VAL 124 28.975 72.986 12.033 1.00 0.00 C ATOM 355 C VAL 124 27.751 72.736 11.198 1.00 0.00 C ATOM 356 O VAL 124 27.790 72.009 10.255 1.00 0.00 O ATOM 357 N ILE 125 26.649 73.356 11.537 1.00 0.00 N ATOM 358 CA ILE 125 25.460 73.127 10.790 1.00 0.00 C ATOM 359 C ILE 125 24.554 74.285 10.908 1.00 0.00 C ATOM 360 O ILE 125 24.644 75.030 11.814 1.00 0.00 O ATOM 361 N PRO 126 23.658 74.419 9.972 1.00 0.00 N ATOM 362 CA PRO 126 22.695 75.490 9.981 1.00 0.00 C ATOM 363 C PRO 126 21.613 75.335 11.018 1.00 0.00 C ATOM 364 O PRO 126 21.254 74.253 11.357 1.00 0.00 O ATOM 365 N ILE 127 21.088 76.442 11.493 1.00 0.00 N ATOM 366 CA ILE 127 19.839 76.463 12.212 1.00 0.00 C ATOM 367 C ILE 127 18.907 77.335 11.436 1.00 0.00 C ATOM 368 O ILE 127 19.332 78.162 10.714 1.00 0.00 O ATOM 369 N HIS 128 17.628 77.106 11.567 1.00 0.00 N ATOM 370 CA HIS 128 16.668 77.683 10.664 1.00 0.00 C ATOM 371 C HIS 128 15.618 78.568 11.273 1.00 0.00 C ATOM 372 O HIS 128 15.048 78.277 12.289 1.00 0.00 O ATOM 373 N SER 129 15.323 79.641 10.580 1.00 0.00 N ATOM 374 CA SER 129 14.175 80.456 10.897 1.00 0.00 C ATOM 375 C SER 129 12.875 79.779 10.486 1.00 0.00 C ATOM 376 O SER 129 12.863 78.895 9.672 1.00 0.00 O ATOM 377 N GLU 130 11.776 80.220 11.062 1.00 0.00 N ATOM 378 CA GLU 130 10.471 79.625 10.840 1.00 0.00 C ATOM 379 C GLU 130 9.999 79.708 9.404 1.00 0.00 C ATOM 380 O GLU 130 9.216 78.914 8.930 1.00 0.00 O ATOM 381 N ASP 131 10.552 80.631 8.659 1.00 0.00 N ATOM 382 CA ASP 131 10.057 80.854 7.339 1.00 0.00 C ATOM 383 C ASP 131 10.672 79.854 6.395 1.00 0.00 C ATOM 384 O ASP 131 10.363 79.849 5.204 1.00 0.00 O ATOM 385 N GLY 132 11.532 79.005 6.948 1.00 0.00 N ATOM 386 CA GLY 132 12.340 78.059 6.198 1.00 0.00 C ATOM 387 C GLY 132 13.686 78.587 5.757 1.00 0.00 C ATOM 388 O GLY 132 14.443 77.908 5.109 1.00 0.00 O ATOM 389 N THR 133 13.985 79.812 6.118 1.00 0.00 N ATOM 390 CA THR 133 15.274 80.381 5.838 1.00 0.00 C ATOM 391 C THR 133 16.312 80.021 6.902 1.00 0.00 C ATOM 392 O THR 133 15.983 79.849 8.042 1.00 0.00 O ATOM 393 N ILE 134 17.564 79.913 6.506 1.00 0.00 N ATOM 394 CA ILE 134 18.650 79.675 7.408 1.00 0.00 C ATOM 395 C ILE 134 18.763 80.868 8.297 1.00 0.00 C ATOM 396 O ILE 134 18.753 81.960 7.822 1.00 0.00 O ATOM 397 N GLU 135 18.881 80.679 9.596 1.00 0.00 N ATOM 398 CA GLU 135 19.125 81.793 10.470 1.00 0.00 C ATOM 399 C GLU 135 20.541 81.997 10.917 1.00 0.00 C ATOM 400 O GLU 135 20.847 82.999 11.472 1.00 0.00 O ATOM 401 N HIS 136 21.391 81.017 10.709 1.00 0.00 N ATOM 402 CA HIS 136 22.738 81.076 11.204 1.00 0.00 C ATOM 403 C HIS 136 23.311 79.695 11.282 1.00 0.00 C ATOM 404 O HIS 136 22.855 78.814 10.619 1.00 0.00 O ATOM 405 N VAL 137 24.314 79.510 12.117 1.00 0.00 N ATOM 406 CA VAL 137 24.836 78.197 12.411 1.00 0.00 C ATOM 407 C VAL 137 25.056 77.967 13.876 1.00 0.00 C ATOM 408 O VAL 137 25.105 78.868 14.646 1.00 0.00 O ATOM 409 N CYS 138 25.179 76.699 14.211 1.00 0.00 N ATOM 410 CA CYS 138 25.518 76.226 15.522 1.00 0.00 C ATOM 411 C CYS 138 26.800 75.464 15.406 1.00 0.00 C ATOM 412 O CYS 138 26.948 74.669 14.530 1.00 0.00 O ATOM 413 N LEU 139 27.728 75.717 16.305 1.00 0.00 N ATOM 414 CA LEU 139 28.998 75.030 16.289 1.00 0.00 C ATOM 415 C LEU 139 29.355 74.284 17.563 1.00 0.00 C ATOM 416 O LEU 139 29.199 74.771 18.641 1.00 0.00 O ATOM 417 N CYS 140 29.845 73.071 17.402 1.00 0.00 N ATOM 418 CA CYS 140 30.172 72.231 18.515 1.00 0.00 C ATOM 419 C CYS 140 31.582 71.742 18.405 1.00 0.00 C ATOM 420 O CYS 140 31.973 71.320 17.382 1.00 0.00 O ATOM 421 N VAL 141 32.351 71.806 19.468 1.00 0.00 N ATOM 422 CA VAL 141 33.668 71.220 19.470 1.00 0.00 C ATOM 423 C VAL 141 33.911 70.370 20.668 1.00 0.00 C ATOM 424 O VAL 141 33.404 70.609 21.711 1.00 0.00 O ATOM 425 N TYR 142 34.725 69.356 20.506 1.00 0.00 N ATOM 426 CA TYR 142 35.070 68.522 21.625 1.00 0.00 C ATOM 427 C TYR 142 36.398 67.841 21.441 1.00 0.00 C ATOM 428 O TYR 142 36.774 67.526 20.347 1.00 0.00 O ATOM 429 N ASP 143 37.087 67.561 22.533 1.00 0.00 N ATOM 430 CA ASP 143 38.344 66.814 22.497 1.00 0.00 C ATOM 431 C ASP 143 38.074 65.332 22.424 1.00 0.00 C ATOM 432 O ASP 143 37.227 64.865 23.125 1.00 0.00 O ATOM 433 N VAL 144 38.792 64.592 21.590 1.00 0.00 N ATOM 434 CA VAL 144 38.511 63.166 21.415 1.00 0.00 C ATOM 435 C VAL 144 39.380 62.226 22.223 1.00 0.00 C ATOM 436 O VAL 144 39.104 61.043 22.318 1.00 0.00 O ATOM 437 N THR 145 40.449 62.754 22.786 1.00 0.00 N ATOM 438 CA THR 145 41.328 61.953 23.608 1.00 0.00 C ATOM 439 C THR 145 40.928 62.116 25.066 1.00 0.00 C ATOM 440 O THR 145 39.744 62.252 25.375 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 348 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 47.46 73.8 122 67.4 181 ARMSMC SECONDARY STRUCTURE . . 48.20 77.6 67 63.8 105 ARMSMC SURFACE . . . . . . . . 54.31 70.5 78 62.4 125 ARMSMC BURIED . . . . . . . . 31.88 79.5 44 78.6 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 76 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 67 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 32 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 22 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.14 (Number of atoms: 87) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.14 87 93.5 93 CRMSCA CRN = ALL/NP . . . . . 0.0246 CRMSCA SECONDARY STRUCTURE . . 1.69 51 94.4 54 CRMSCA SURFACE . . . . . . . . 2.41 58 90.6 64 CRMSCA BURIED . . . . . . . . 1.46 29 100.0 29 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.13 348 75.2 463 CRMSMC SECONDARY STRUCTURE . . 1.68 204 75.6 270 CRMSMC SURFACE . . . . . . . . 2.44 232 73.0 318 CRMSMC BURIED . . . . . . . . 1.32 116 80.0 145 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 364 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 308 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 214 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 258 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 106 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.13 348 47.3 736 CRMSALL SECONDARY STRUCTURE . . 1.68 204 47.4 430 CRMSALL SURFACE . . . . . . . . 2.44 232 45.1 514 CRMSALL BURIED . . . . . . . . 1.32 116 52.3 222 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.570 1.000 0.500 87 93.5 93 ERRCA SECONDARY STRUCTURE . . 1.341 1.000 0.500 51 94.4 54 ERRCA SURFACE . . . . . . . . 1.809 1.000 0.500 58 90.6 64 ERRCA BURIED . . . . . . . . 1.093 1.000 0.500 29 100.0 29 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.558 1.000 0.500 348 75.2 463 ERRMC SECONDARY STRUCTURE . . 1.328 1.000 0.500 204 75.6 270 ERRMC SURFACE . . . . . . . . 1.819 1.000 0.500 232 73.0 318 ERRMC BURIED . . . . . . . . 1.036 1.000 0.500 116 80.0 145 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 364 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 308 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 214 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 258 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 106 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.558 1.000 0.500 348 47.3 736 ERRALL SECONDARY STRUCTURE . . 1.328 1.000 0.500 204 47.4 430 ERRALL SURFACE . . . . . . . . 1.819 1.000 0.500 232 45.1 514 ERRALL BURIED . . . . . . . . 1.036 1.000 0.500 116 52.3 222 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 36 64 76 85 86 87 93 DISTCA CA (P) 38.71 68.82 81.72 91.40 92.47 93 DISTCA CA (RMS) 0.64 1.03 1.34 1.75 1.84 DISTCA ALL (N) 152 255 308 339 346 348 736 DISTALL ALL (P) 20.65 34.65 41.85 46.06 47.01 736 DISTALL ALL (RMS) 0.63 1.02 1.37 1.72 1.97 DISTALL END of the results output