####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 285), selected 41 , name T0534TS481_1_1-D1 # Molecule2: number of CA atoms 178 ( 1402), selected 41 , name T0534-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0534TS481_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 32 - 61 4.78 12.46 LONGEST_CONTINUOUS_SEGMENT: 30 33 - 62 4.59 11.85 LONGEST_CONTINUOUS_SEGMENT: 30 34 - 63 4.71 11.33 LONGEST_CONTINUOUS_SEGMENT: 30 35 - 64 4.97 11.09 LCS_AVERAGE: 16.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 41 - 62 1.92 11.09 LCS_AVERAGE: 9.63 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 42 - 60 0.91 10.88 LONGEST_CONTINUOUS_SEGMENT: 19 43 - 61 0.79 10.77 LCS_AVERAGE: 7.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 31 T 31 8 9 27 3 7 8 9 9 10 11 12 13 15 16 17 17 20 23 24 26 27 30 30 LCS_GDT V 32 V 32 8 9 30 3 7 8 9 9 10 11 12 13 15 18 21 24 24 27 29 29 30 30 31 LCS_GDT D 33 D 33 8 9 30 6 6 8 9 9 10 11 13 15 18 21 24 26 27 27 29 29 30 30 31 LCS_GDT P 34 P 34 8 9 30 6 7 8 9 9 10 11 16 21 22 24 25 26 27 27 29 29 30 30 31 LCS_GDT A 35 A 35 8 9 30 6 7 8 9 9 10 12 17 21 22 24 25 26 27 27 29 29 30 30 31 LCS_GDT N 36 N 36 8 9 30 6 7 8 9 9 10 13 14 16 18 20 22 24 27 27 29 29 30 30 31 LCS_GDT I 37 I 37 8 9 30 6 7 8 9 9 10 13 15 16 20 23 25 26 27 27 29 29 30 30 31 LCS_GDT D 38 D 38 8 9 30 6 7 8 9 9 11 13 14 15 18 20 23 24 27 27 29 29 30 30 31 LCS_GDT Y 39 Y 39 5 9 30 3 3 6 9 9 13 16 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT T 40 T 40 5 21 30 4 5 6 7 9 13 19 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT P 41 P 41 5 22 30 4 5 6 7 10 14 19 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT E 42 E 42 19 22 30 4 5 11 18 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT N 43 N 43 19 22 30 8 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT A 44 A 44 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT S 45 S 45 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT S 46 S 46 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT W 47 W 47 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT H 48 H 48 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT N 49 N 49 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT Y 50 Y 50 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT M 51 M 51 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT R 52 R 52 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT N 53 N 53 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT V 54 V 54 19 22 30 10 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT A 55 A 55 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT A 56 A 56 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT L 57 L 57 19 22 30 6 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT L 58 L 58 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT K 59 K 59 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT T 60 T 60 19 22 30 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 LCS_GDT D 61 D 61 19 22 30 6 11 12 19 20 20 21 21 23 24 24 25 26 27 27 28 29 30 30 31 LCS_GDT A 62 A 62 11 22 30 10 11 11 11 18 20 21 21 21 24 24 24 26 26 27 28 28 29 30 31 LCS_GDT T 63 T 63 11 13 30 10 11 11 11 11 13 14 17 21 22 22 23 25 25 26 26 27 28 29 30 LCS_GDT N 64 N 64 11 13 30 10 11 11 11 11 13 13 15 18 22 22 23 23 24 26 26 27 28 28 30 LCS_GDT L 65 L 65 11 13 29 10 11 11 11 11 13 13 14 15 16 17 17 23 24 25 25 27 28 28 29 LCS_GDT Y 66 Y 66 11 13 29 10 11 11 11 11 13 13 14 15 16 17 18 23 24 25 25 27 28 28 29 LCS_GDT N 67 N 67 11 13 27 10 11 11 11 11 13 13 14 15 16 17 17 21 24 25 25 25 27 28 29 LCS_GDT A 68 A 68 11 13 25 10 11 11 11 11 13 13 14 15 16 17 17 18 20 21 23 25 26 26 26 LCS_GDT W 69 W 69 11 13 21 10 11 11 11 11 13 13 14 15 16 17 17 18 20 21 21 23 24 24 26 LCS_GDT N 70 N 70 11 13 21 10 11 11 11 11 13 13 14 15 16 17 17 18 20 21 21 23 24 25 26 LCS_GDT S 71 S 71 11 13 21 10 11 11 11 11 13 13 14 15 16 17 17 18 20 21 21 23 24 24 25 LCS_AVERAGE LCS_A: 11.25 ( 7.80 9.63 16.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 18 18 19 20 20 21 21 23 24 24 25 26 27 27 29 29 30 30 31 GDT PERCENT_AT 6.74 10.11 10.11 10.67 11.24 11.24 11.80 11.80 12.92 13.48 13.48 14.04 14.61 15.17 15.17 16.29 16.29 16.85 16.85 17.42 GDT RMS_LOCAL 0.22 0.53 0.53 0.79 1.07 1.07 1.45 1.45 2.29 2.45 2.45 3.10 3.29 3.84 3.59 4.71 4.38 4.78 4.59 5.00 GDT RMS_ALL_AT 10.99 10.79 10.79 10.77 10.84 10.84 10.78 10.78 11.67 11.63 11.63 11.41 11.19 11.76 11.34 12.77 12.18 12.46 11.85 12.09 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 31 T 31 23.083 2 0.602 0.550 25.360 0.000 0.000 LGA V 32 V 32 17.620 2 0.041 0.044 19.671 0.000 0.000 LGA D 33 D 33 14.188 3 0.216 0.287 15.337 0.000 0.000 LGA P 34 P 34 8.925 2 0.081 0.080 10.631 5.000 3.265 LGA A 35 A 35 8.171 0 0.069 0.073 10.549 2.500 2.571 LGA N 36 N 36 12.934 3 0.069 0.067 15.130 0.000 0.000 LGA I 37 I 37 9.900 3 0.115 0.134 10.485 2.262 1.488 LGA D 38 D 38 10.559 3 0.187 0.244 13.488 0.476 0.238 LGA Y 39 Y 39 7.253 7 0.178 0.241 8.892 6.190 3.492 LGA T 40 T 40 7.048 2 0.221 0.270 7.425 20.476 13.129 LGA P 41 P 41 6.747 2 0.045 0.048 8.838 19.762 11.701 LGA E 42 E 42 3.335 4 0.117 0.120 4.649 56.786 30.794 LGA N 43 N 43 0.901 3 0.499 0.461 2.739 90.595 52.440 LGA A 44 A 44 0.698 0 0.080 0.078 0.910 90.476 90.476 LGA S 45 S 45 0.739 1 0.048 0.052 0.944 90.476 75.397 LGA S 46 S 46 0.564 1 0.015 0.022 0.636 95.238 78.571 LGA W 47 W 47 0.501 9 0.008 0.012 0.635 92.857 32.993 LGA H 48 H 48 0.582 5 0.033 0.032 0.720 90.476 45.238 LGA N 49 N 49 0.446 3 0.040 0.054 0.808 100.000 61.310 LGA Y 50 Y 50 0.579 7 0.056 0.061 0.666 92.857 38.492 LGA M 51 M 51 0.670 3 0.031 0.030 0.930 90.476 56.548 LGA R 52 R 52 0.487 6 0.051 0.057 0.585 92.857 42.857 LGA N 53 N 53 0.795 3 0.023 0.023 1.143 85.952 53.155 LGA V 54 V 54 1.599 2 0.048 0.058 2.149 79.286 54.558 LGA A 55 A 55 1.392 0 0.077 0.084 1.493 83.690 83.238 LGA A 56 A 56 0.832 0 0.025 0.026 1.102 90.595 90.571 LGA L 57 L 57 0.875 3 0.051 0.057 1.363 90.476 55.417 LGA L 58 L 58 0.361 3 0.085 0.086 0.592 97.619 61.310 LGA K 59 K 59 0.443 4 0.009 0.024 0.698 97.619 53.439 LGA T 60 T 60 0.181 2 0.091 0.104 1.400 92.976 66.054 LGA D 61 D 61 1.974 3 0.505 0.484 5.477 57.619 35.060 LGA A 62 A 62 4.260 0 0.022 0.021 8.293 28.095 32.476 LGA T 63 T 63 9.409 2 0.039 0.044 12.457 3.690 2.109 LGA N 64 N 64 10.494 3 0.017 0.019 13.685 0.357 0.357 LGA L 65 L 65 12.070 3 0.016 0.016 15.754 0.000 0.000 LGA Y 66 Y 66 14.644 7 0.140 0.150 17.880 0.000 0.000 LGA N 67 N 67 17.473 3 0.054 0.057 20.771 0.000 0.000 LGA A 68 A 68 19.589 0 0.012 0.015 23.205 0.000 0.000 LGA W 69 W 69 22.274 9 0.038 0.044 25.605 0.000 0.000 LGA N 70 N 70 23.915 3 0.084 0.088 27.589 0.000 0.000 LGA S 71 S 71 26.224 1 0.107 0.099 28.573 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 41 164 164 100.00 327 205 62.69 178 SUMMARY(RMSD_GDC): 9.918 10.084 10.062 10.381 6.903 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 178 4.0 21 1.45 12.219 11.574 1.356 LGA_LOCAL RMSD: 1.449 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.779 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.918 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.574186 * X + -0.606807 * Y + -0.549633 * Z + 3.244874 Y_new = -0.651492 * X + 0.067945 * Y + -0.755607 * Z + 14.647798 Z_new = 0.495852 * X + 0.791940 * Y + -0.356317 * Z + 43.127956 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.848387 -0.518816 1.993591 [DEG: -48.6090 -29.7259 114.2243 ] ZXZ: -0.628884 1.935119 0.559406 [DEG: -36.0324 110.8742 32.0516 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0534TS481_1_1-D1 REMARK 2: T0534-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0534TS481_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 178 4.0 21 1.45 11.574 9.92 REMARK ---------------------------------------------------------- MOLECULE T0534TS481_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0534 REMARK PARENT N/A ATOM 209 N THR 31 -13.967 7.561 64.277 1.00 0.00 N ATOM 210 CA THR 31 -13.270 7.511 65.557 1.00 0.00 C ATOM 211 C THR 31 -11.920 6.816 65.421 1.00 0.00 C ATOM 212 O THR 31 -11.142 6.759 66.374 1.00 0.00 O ATOM 213 CB THR 31 -14.103 6.783 66.628 1.00 0.00 C ATOM 214 CEN THR 31 -14.585 6.728 66.954 1.00 0.00 C ATOM 215 H THR 31 -14.681 6.875 64.080 1.00 0.00 H ATOM 216 N VAL 32 -11.648 6.289 64.233 1.00 0.00 N ATOM 217 CA VAL 32 -10.384 5.613 63.965 1.00 0.00 C ATOM 218 C VAL 32 -9.730 6.153 62.699 1.00 0.00 C ATOM 219 O VAL 32 -10.408 6.439 61.712 1.00 0.00 O ATOM 220 CB VAL 32 -10.574 4.092 63.825 1.00 0.00 C ATOM 221 CEN VAL 32 -10.454 3.488 64.133 1.00 0.00 C ATOM 222 H VAL 32 -12.336 6.358 63.496 1.00 0.00 H ATOM 223 N ASP 33 -8.408 6.288 62.734 1.00 0.00 N ATOM 224 CA ASP 33 -7.662 6.813 61.597 1.00 0.00 C ATOM 225 C ASP 33 -6.594 5.828 61.137 1.00 0.00 C ATOM 226 O ASP 33 -6.284 4.863 61.834 1.00 0.00 O ATOM 227 CB ASP 33 -7.021 8.157 61.951 1.00 0.00 C ATOM 228 CEN ASP 33 -7.186 9.157 61.847 1.00 0.00 C ATOM 229 H ASP 33 -7.908 6.020 63.569 1.00 0.00 H ATOM 230 N PRO 34 -6.034 6.080 59.959 1.00 0.00 N ATOM 231 CA PRO 34 -5.146 5.120 59.313 1.00 0.00 C ATOM 232 C PRO 34 -3.838 4.979 60.079 1.00 0.00 C ATOM 233 O PRO 34 -3.133 3.978 59.945 1.00 0.00 O ATOM 234 CB PRO 34 -4.931 5.697 57.903 1.00 0.00 C ATOM 235 CEN PRO 34 -5.954 7.032 58.501 1.00 0.00 C ATOM 236 N ALA 35 -3.518 5.986 60.884 1.00 0.00 N ATOM 237 CA ALA 35 -2.359 5.922 61.768 1.00 0.00 C ATOM 238 C ALA 35 -2.452 4.729 62.712 1.00 0.00 C ATOM 239 O ALA 35 -1.435 4.173 63.126 1.00 0.00 O ATOM 240 CB ALA 35 -2.223 7.216 62.557 1.00 0.00 C ATOM 241 CEN ALA 35 -2.223 7.215 62.557 1.00 0.00 C ATOM 242 H ALA 35 -4.091 6.817 60.884 1.00 0.00 H ATOM 243 N ASN 36 -3.677 4.340 63.048 1.00 0.00 N ATOM 244 CA ASN 36 -3.906 3.326 64.069 1.00 0.00 C ATOM 245 C ASN 36 -3.808 1.923 63.484 1.00 0.00 C ATOM 246 O ASN 36 -3.872 0.931 64.211 1.00 0.00 O ATOM 247 CB ASN 36 -5.247 3.518 64.751 1.00 0.00 C ATOM 248 CEN ASN 36 -5.632 4.005 65.597 1.00 0.00 C ATOM 249 H ASN 36 -4.471 4.757 62.583 1.00 0.00 H ATOM 250 N ILE 37 -3.654 1.846 62.167 1.00 0.00 N ATOM 251 CA ILE 37 -3.615 0.564 61.473 1.00 0.00 C ATOM 252 C ILE 37 -2.213 -0.032 61.493 1.00 0.00 C ATOM 253 O ILE 37 -1.222 0.689 61.386 1.00 0.00 O ATOM 254 CB ILE 37 -4.086 0.697 60.013 1.00 0.00 C ATOM 255 CEN ILE 37 -4.953 0.705 59.354 1.00 0.00 C ATOM 256 H ILE 37 -3.560 2.697 61.632 1.00 0.00 H ATOM 257 N ASP 38 -2.139 -1.351 61.631 1.00 0.00 N ATOM 258 CA ASP 38 -0.861 -2.053 61.599 1.00 0.00 C ATOM 259 C ASP 38 -0.604 -2.670 60.230 1.00 0.00 C ATOM 260 O ASP 38 -1.177 -3.703 59.888 1.00 0.00 O ATOM 261 CB ASP 38 -0.817 -3.137 62.680 1.00 0.00 C ATOM 262 CEN ASP 38 -0.471 -3.288 63.625 1.00 0.00 C ATOM 263 H ASP 38 -2.988 -1.881 61.761 1.00 0.00 H ATOM 264 N TYR 39 0.259 -2.027 59.450 1.00 0.00 N ATOM 265 CA TYR 39 0.587 -2.508 58.114 1.00 0.00 C ATOM 266 C TYR 39 1.963 -2.020 57.675 1.00 0.00 C ATOM 267 O TYR 39 2.529 -1.108 58.276 1.00 0.00 O ATOM 268 CB TYR 39 -0.474 -2.056 57.106 1.00 0.00 C ATOM 269 CEN TYR 39 -1.883 -2.670 56.268 1.00 0.00 C ATOM 270 H TYR 39 0.700 -1.186 59.792 1.00 0.00 H ATOM 271 N THR 40 2.495 -2.636 56.624 1.00 0.00 N ATOM 272 CA THR 40 3.811 -2.274 56.111 1.00 0.00 C ATOM 273 C THR 40 3.715 -1.719 54.695 1.00 0.00 C ATOM 274 O THR 40 3.500 -2.465 53.739 1.00 0.00 O ATOM 275 CB THR 40 4.771 -3.478 56.117 1.00 0.00 C ATOM 276 CEN THR 40 5.060 -3.903 56.394 1.00 0.00 C ATOM 277 H THR 40 1.976 -3.373 56.171 1.00 0.00 H ATOM 278 N PRO 41 3.877 -0.407 54.568 1.00 0.00 N ATOM 279 CA PRO 41 3.786 0.253 53.271 1.00 0.00 C ATOM 280 C PRO 41 4.800 -0.320 52.288 1.00 0.00 C ATOM 281 O PRO 41 4.582 -0.302 51.077 1.00 0.00 O ATOM 282 CB PRO 41 4.056 1.735 53.583 1.00 0.00 C ATOM 283 CEN PRO 41 4.285 1.143 55.251 1.00 0.00 C ATOM 284 N GLU 42 5.908 -0.826 52.817 1.00 0.00 N ATOM 285 CA GLU 42 6.945 -1.430 51.989 1.00 0.00 C ATOM 286 C GLU 42 6.658 -2.904 51.736 1.00 0.00 C ATOM 287 O GLU 42 7.312 -3.541 50.910 1.00 0.00 O ATOM 288 CB GLU 42 8.317 -1.267 52.647 1.00 0.00 C ATOM 289 CEN GLU 42 9.804 -0.444 52.777 1.00 0.00 C ATOM 290 H GLU 42 6.036 -0.792 53.819 1.00 0.00 H ATOM 291 N ASN 43 5.676 -3.442 52.451 1.00 0.00 N ATOM 292 CA ASN 43 5.263 -4.828 52.265 1.00 0.00 C ATOM 293 C ASN 43 3.752 -4.937 52.114 1.00 0.00 C ATOM 294 O ASN 43 3.010 -4.818 53.089 1.00 0.00 O ATOM 295 CB ASN 43 5.741 -5.708 53.406 1.00 0.00 C ATOM 296 CEN ASN 43 6.566 -6.316 53.632 1.00 0.00 C ATOM 297 H ASN 43 5.204 -2.877 53.142 1.00 0.00 H ATOM 298 N ALA 44 3.299 -5.164 50.885 1.00 0.00 N ATOM 299 CA ALA 44 1.872 -5.220 50.592 1.00 0.00 C ATOM 300 C ALA 44 1.224 -6.437 51.240 1.00 0.00 C ATOM 301 O ALA 44 0.081 -6.375 51.694 1.00 0.00 O ATOM 302 CB ALA 44 1.640 -5.230 49.088 1.00 0.00 C ATOM 303 CEN ALA 44 1.640 -5.230 49.089 1.00 0.00 C ATOM 304 H ALA 44 3.961 -5.301 50.135 1.00 0.00 H ATOM 305 N SER 45 1.960 -7.541 51.281 1.00 0.00 N ATOM 306 CA SER 45 1.467 -8.769 51.893 1.00 0.00 C ATOM 307 C SER 45 1.116 -8.551 53.359 1.00 0.00 C ATOM 308 O SER 45 -0.001 -8.841 53.790 1.00 0.00 O ATOM 309 CB SER 45 2.497 -9.873 51.755 1.00 0.00 C ATOM 310 CEN SER 45 2.985 -10.112 51.729 1.00 0.00 C ATOM 311 H SER 45 2.887 -7.530 50.878 1.00 0.00 H ATOM 312 N SER 46 2.076 -8.040 54.122 1.00 0.00 N ATOM 313 CA SER 46 1.864 -7.768 55.539 1.00 0.00 C ATOM 314 C SER 46 0.619 -6.917 55.757 1.00 0.00 C ATOM 315 O SER 46 -0.227 -7.240 56.591 1.00 0.00 O ATOM 316 CB SER 46 3.082 -7.082 56.126 1.00 0.00 C ATOM 317 CEN SER 46 3.518 -6.757 56.154 1.00 0.00 C ATOM 318 H SER 46 2.974 -7.833 53.710 1.00 0.00 H ATOM 319 N TRP 47 0.513 -5.828 55.003 1.00 0.00 N ATOM 320 CA TRP 47 -0.650 -4.953 55.080 1.00 0.00 C ATOM 321 C TRP 47 -1.928 -5.704 54.734 1.00 0.00 C ATOM 322 O TRP 47 -2.942 -5.574 55.421 1.00 0.00 O ATOM 323 CB TRP 47 -0.478 -3.753 54.147 1.00 0.00 C ATOM 324 CEN TRP 47 -0.347 -2.004 54.149 1.00 0.00 C ATOM 325 H TRP 47 1.258 -5.601 54.360 1.00 0.00 H ATOM 326 N HIS 48 -1.875 -6.492 53.665 1.00 0.00 N ATOM 327 CA HIS 48 -3.039 -7.241 53.206 1.00 0.00 C ATOM 328 C HIS 48 -3.462 -8.285 54.231 1.00 0.00 C ATOM 329 O HIS 48 -4.651 -8.463 54.496 1.00 0.00 O ATOM 330 CB HIS 48 -2.753 -7.914 51.860 1.00 0.00 C ATOM 331 CEN HIS 48 -2.954 -7.651 50.475 1.00 0.00 C ATOM 332 H HIS 48 -1.006 -6.574 53.157 1.00 0.00 H ATOM 333 N ASN 49 -2.481 -8.973 54.807 1.00 0.00 N ATOM 334 CA ASN 49 -2.747 -9.969 55.837 1.00 0.00 C ATOM 335 C ASN 49 -3.370 -9.331 57.072 1.00 0.00 C ATOM 336 O ASN 49 -4.322 -9.864 57.644 1.00 0.00 O ATOM 337 CB ASN 49 -1.486 -10.724 56.218 1.00 0.00 C ATOM 338 CEN ASN 49 -0.988 -11.605 55.940 1.00 0.00 C ATOM 339 H ASN 49 -1.527 -8.801 54.522 1.00 0.00 H ATOM 340 N TYR 50 -2.831 -8.187 57.479 1.00 0.00 N ATOM 341 CA TYR 50 -3.340 -7.469 58.640 1.00 0.00 C ATOM 342 C TYR 50 -4.736 -6.918 58.380 1.00 0.00 C ATOM 343 O TYR 50 -5.615 -6.994 59.237 1.00 0.00 O ATOM 344 CB TYR 50 -2.390 -6.334 59.027 1.00 0.00 C ATOM 345 CEN TYR 50 -1.122 -5.970 60.180 1.00 0.00 C ATOM 346 H TYR 50 -2.047 -7.805 56.969 1.00 0.00 H ATOM 347 N MET 51 -4.933 -6.360 57.189 1.00 0.00 N ATOM 348 CA MET 51 -6.224 -5.798 56.810 1.00 0.00 C ATOM 349 C MET 51 -7.306 -6.870 56.790 1.00 0.00 C ATOM 350 O MET 51 -8.435 -6.635 57.222 1.00 0.00 O ATOM 351 CB MET 51 -6.124 -5.121 55.446 1.00 0.00 C ATOM 352 CEN MET 51 -6.130 -3.549 54.665 1.00 0.00 C ATOM 353 H MET 51 -4.169 -6.325 56.530 1.00 0.00 H ATOM 354 N ARG 52 -6.956 -8.048 56.283 1.00 0.00 N ATOM 355 CA ARG 52 -7.870 -9.184 56.283 1.00 0.00 C ATOM 356 C ARG 52 -8.193 -9.633 57.703 1.00 0.00 C ATOM 357 O ARG 52 -9.334 -9.975 58.011 1.00 0.00 O ATOM 358 CB ARG 52 -7.351 -10.338 55.438 1.00 0.00 C ATOM 359 CEN ARG 52 -7.001 -11.853 53.505 1.00 0.00 C ATOM 360 H ARG 52 -6.033 -8.159 55.889 1.00 0.00 H ATOM 361 N ASN 53 -7.181 -9.628 58.564 1.00 0.00 N ATOM 362 CA ASN 53 -7.373 -9.943 59.973 1.00 0.00 C ATOM 363 C ASN 53 -8.326 -8.956 60.634 1.00 0.00 C ATOM 364 O ASN 53 -9.173 -9.341 61.441 1.00 0.00 O ATOM 365 CB ASN 53 -6.052 -9.978 60.720 1.00 0.00 C ATOM 366 CEN ASN 53 -5.323 -10.683 60.987 1.00 0.00 C ATOM 367 H ASN 53 -6.254 -9.399 58.233 1.00 0.00 H ATOM 368 N VAL 54 -8.183 -7.681 60.288 1.00 0.00 N ATOM 369 CA VAL 54 -9.031 -6.636 60.848 1.00 0.00 C ATOM 370 C VAL 54 -10.501 -6.899 60.548 1.00 0.00 C ATOM 371 O VAL 54 -11.328 -6.962 61.458 1.00 0.00 O ATOM 372 CB VAL 54 -8.648 -5.247 60.304 1.00 0.00 C ATOM 373 CEN VAL 54 -8.358 -4.645 60.474 1.00 0.00 C ATOM 374 H VAL 54 -7.469 -7.430 59.619 1.00 0.00 H ATOM 375 N ALA 55 -10.821 -7.054 59.268 1.00 0.00 N ATOM 376 CA ALA 55 -12.189 -7.330 58.848 1.00 0.00 C ATOM 377 C ALA 55 -12.704 -8.623 59.465 1.00 0.00 C ATOM 378 O ALA 55 -13.766 -8.646 60.088 1.00 0.00 O ATOM 379 CB ALA 55 -12.276 -7.391 57.330 1.00 0.00 C ATOM 380 CEN ALA 55 -12.276 -7.391 57.331 1.00 0.00 C ATOM 381 H ALA 55 -10.098 -6.978 58.567 1.00 0.00 H ATOM 382 N ALA 56 -11.948 -9.700 59.288 1.00 0.00 N ATOM 383 CA ALA 56 -12.315 -10.996 59.846 1.00 0.00 C ATOM 384 C ALA 56 -12.353 -10.949 61.368 1.00 0.00 C ATOM 385 O ALA 56 -13.230 -11.544 61.995 1.00 0.00 O ATOM 386 CB ALA 56 -11.349 -12.072 59.370 1.00 0.00 C ATOM 387 CEN ALA 56 -11.349 -12.071 59.372 1.00 0.00 C ATOM 388 H ALA 56 -11.095 -9.620 58.751 1.00 0.00 H ATOM 389 N LEU 57 -11.399 -10.236 61.957 1.00 0.00 N ATOM 390 CA LEU 57 -11.324 -10.107 63.408 1.00 0.00 C ATOM 391 C LEU 57 -12.520 -9.339 63.954 1.00 0.00 C ATOM 392 O LEU 57 -13.154 -9.764 64.921 1.00 0.00 O ATOM 393 CB LEU 57 -10.016 -9.416 63.812 1.00 0.00 C ATOM 394 CEN LEU 57 -8.699 -9.940 64.414 1.00 0.00 C ATOM 395 H LEU 57 -10.708 -9.772 61.385 1.00 0.00 H ATOM 396 N LEU 58 -12.826 -8.207 63.332 1.00 0.00 N ATOM 397 CA LEU 58 -13.918 -7.354 63.783 1.00 0.00 C ATOM 398 C LEU 58 -15.265 -8.043 63.604 1.00 0.00 C ATOM 399 O LEU 58 -16.248 -7.682 64.251 1.00 0.00 O ATOM 400 CB LEU 58 -13.897 -6.019 63.026 1.00 0.00 C ATOM 401 CEN LEU 58 -13.452 -4.600 63.424 1.00 0.00 C ATOM 402 H LEU 58 -12.286 -7.928 62.524 1.00 0.00 H ATOM 403 N LYS 59 -15.303 -9.036 62.723 1.00 0.00 N ATOM 404 CA LYS 59 -16.525 -9.791 62.471 1.00 0.00 C ATOM 405 C LYS 59 -16.788 -10.800 63.580 1.00 0.00 C ATOM 406 O LYS 59 -17.883 -10.850 64.142 1.00 0.00 O ATOM 407 CB LYS 59 -16.446 -10.503 61.119 1.00 0.00 C ATOM 408 CEN LYS 59 -17.021 -10.593 59.085 1.00 0.00 C ATOM 409 H LYS 59 -14.464 -9.276 62.215 1.00 0.00 H ATOM 410 N THR 60 -15.778 -11.605 63.893 1.00 0.00 N ATOM 411 CA THR 60 -15.918 -12.657 64.893 1.00 0.00 C ATOM 412 C THR 60 -15.586 -12.141 66.287 1.00 0.00 C ATOM 413 O THR 60 -16.157 -12.594 67.279 1.00 0.00 O ATOM 414 CB THR 60 -15.013 -13.862 64.574 1.00 0.00 C ATOM 415 CEN THR 60 -14.840 -14.297 64.224 1.00 0.00 C ATOM 416 H THR 60 -14.891 -11.484 63.426 1.00 0.00 H ATOM 417 N ASP 61 -14.662 -11.188 66.355 1.00 0.00 N ATOM 418 CA ASP 61 -14.242 -10.619 67.629 1.00 0.00 C ATOM 419 C ASP 61 -14.143 -9.101 67.548 1.00 0.00 C ATOM 420 O ASP 61 -13.082 -8.524 67.791 1.00 0.00 O ATOM 421 CB ASP 61 -12.900 -11.211 68.066 1.00 0.00 C ATOM 422 CEN ASP 61 -12.523 -11.937 68.673 1.00 0.00 C ATOM 423 H ASP 61 -14.240 -10.851 65.502 1.00 0.00 H ATOM 424 N ALA 62 -15.253 -8.458 67.204 1.00 0.00 N ATOM 425 CA ALA 62 -15.292 -7.005 67.085 1.00 0.00 C ATOM 426 C ALA 62 -14.974 -6.335 68.416 1.00 0.00 C ATOM 427 O ALA 62 -14.344 -5.278 68.455 1.00 0.00 O ATOM 428 CB ALA 62 -16.650 -6.551 66.571 1.00 0.00 C ATOM 429 CEN ALA 62 -16.649 -6.551 66.571 1.00 0.00 C ATOM 430 H ALA 62 -16.092 -8.989 67.020 1.00 0.00 H ATOM 431 N THR 63 -15.414 -6.956 69.505 1.00 0.00 N ATOM 432 CA THR 63 -15.190 -6.413 70.839 1.00 0.00 C ATOM 433 C THR 63 -13.702 -6.312 71.150 1.00 0.00 C ATOM 434 O THR 63 -13.207 -5.247 71.522 1.00 0.00 O ATOM 435 CB THR 63 -15.871 -7.273 71.920 1.00 0.00 C ATOM 436 CEN THR 63 -16.345 -7.515 72.162 1.00 0.00 C ATOM 437 H THR 63 -15.919 -7.826 69.406 1.00 0.00 H ATOM 438 N ASN 64 -12.993 -7.423 70.993 1.00 0.00 N ATOM 439 CA ASN 64 -11.557 -7.458 71.242 1.00 0.00 C ATOM 440 C ASN 64 -10.833 -6.383 70.441 1.00 0.00 C ATOM 441 O ASN 64 -9.910 -5.739 70.940 1.00 0.00 O ATOM 442 CB ASN 64 -10.972 -8.824 70.933 1.00 0.00 C ATOM 443 CEN ASN 64 -10.761 -9.717 71.441 1.00 0.00 C ATOM 444 H ASN 64 -13.460 -8.267 70.694 1.00 0.00 H ATOM 445 N LEU 65 -11.257 -6.193 69.196 1.00 0.00 N ATOM 446 CA LEU 65 -10.628 -5.220 68.312 1.00 0.00 C ATOM 447 C LEU 65 -10.862 -3.797 68.802 1.00 0.00 C ATOM 448 O LEU 65 -9.919 -3.025 68.970 1.00 0.00 O ATOM 449 CB LEU 65 -11.155 -5.385 66.880 1.00 0.00 C ATOM 450 CEN LEU 65 -10.548 -6.005 65.608 1.00 0.00 C ATOM 451 H LEU 65 -12.036 -6.737 68.854 1.00 0.00 H ATOM 452 N TYR 66 -12.127 -3.456 69.030 1.00 0.00 N ATOM 453 CA TYR 66 -12.485 -2.133 69.527 1.00 0.00 C ATOM 454 C TYR 66 -12.258 -2.030 71.029 1.00 0.00 C ATOM 455 O TYR 66 -12.173 -0.931 71.580 1.00 0.00 O ATOM 456 CB TYR 66 -13.945 -1.814 69.193 1.00 0.00 C ATOM 457 CEN TYR 66 -14.895 -0.913 68.031 1.00 0.00 C ATOM 458 H TYR 66 -12.858 -4.130 68.853 1.00 0.00 H ATOM 459 N ASN 67 -12.161 -3.179 71.689 1.00 0.00 N ATOM 460 CA ASN 67 -11.821 -3.223 73.107 1.00 0.00 C ATOM 461 C ASN 67 -10.392 -2.754 73.344 1.00 0.00 C ATOM 462 O ASN 67 -10.133 -1.953 74.242 1.00 0.00 O ATOM 463 CB ASN 67 -12.019 -4.613 73.681 1.00 0.00 C ATOM 464 CEN ASN 67 -12.773 -5.157 74.170 1.00 0.00 C ATOM 465 H ASN 67 -12.327 -4.044 71.196 1.00 0.00 H ATOM 466 N ALA 68 -9.466 -3.256 72.534 1.00 0.00 N ATOM 467 CA ALA 68 -8.076 -2.823 72.597 1.00 0.00 C ATOM 468 C ALA 68 -7.943 -1.344 72.254 1.00 0.00 C ATOM 469 O ALA 68 -7.195 -0.613 72.902 1.00 0.00 O ATOM 470 CB ALA 68 -7.216 -3.664 71.665 1.00 0.00 C ATOM 471 CEN ALA 68 -7.216 -3.664 71.665 1.00 0.00 C ATOM 472 H ALA 68 -9.733 -3.958 71.857 1.00 0.00 H ATOM 473 N TRP 69 -8.676 -0.910 71.234 1.00 0.00 N ATOM 474 CA TRP 69 -8.598 0.468 70.767 1.00 0.00 C ATOM 475 C TRP 69 -9.145 1.435 71.809 1.00 0.00 C ATOM 476 O TRP 69 -8.533 2.463 72.097 1.00 0.00 O ATOM 477 CB TRP 69 -9.360 0.628 69.450 1.00 0.00 C ATOM 478 CEN TRP 69 -9.135 1.043 67.761 1.00 0.00 C ATOM 479 H TRP 69 -9.303 -1.552 70.771 1.00 0.00 H ATOM 480 N ASN 70 -10.301 1.099 72.371 1.00 0.00 N ATOM 481 CA ASN 70 -11.044 2.030 73.212 1.00 0.00 C ATOM 482 C ASN 70 -10.563 1.971 74.656 1.00 0.00 C ATOM 483 O ASN 70 -10.444 2.997 75.324 1.00 0.00 O ATOM 484 CB ASN 70 -12.537 1.770 73.145 1.00 0.00 C ATOM 485 CEN ASN 70 -13.365 2.102 72.592 1.00 0.00 C ATOM 486 H ASN 70 -10.676 0.176 72.210 1.00 0.00 H ATOM 487 N SER 71 -10.288 0.761 75.134 1.00 0.00 N ATOM 488 CA SER 71 -9.918 0.554 76.529 1.00 0.00 C ATOM 489 C SER 71 -8.644 -0.273 76.643 1.00 0.00 C ATOM 490 O SER 71 -7.839 0.109 77.097 1.00 0.00 O ATOM 491 CB SER 71 -11.053 -0.119 77.275 1.00 0.00 C ATOM 492 CEN SER 71 -11.479 -0.446 77.366 1.00 0.00 C ATOM 493 H SER 71 -10.336 -0.035 74.513 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 205 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 30.54 87.5 80 22.6 354 ARMSMC SECONDARY STRUCTURE . . 20.16 96.3 54 26.2 206 ARMSMC SURFACE . . . . . . . . 29.02 91.2 34 17.3 196 ARMSMC BURIED . . . . . . . . 31.61 84.8 46 29.1 158 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 149 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 136 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 85 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 85 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 64 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 113 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 81 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 66 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 66 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 41 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.92 (Number of atoms: 41) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.92 41 23.0 178 CRMSCA CRN = ALL/NP . . . . . 0.2419 CRMSCA SECONDARY STRUCTURE . . 8.01 27 26.2 103 CRMSCA SURFACE . . . . . . . . 11.65 18 18.2 99 CRMSCA BURIED . . . . . . . . 8.32 23 29.1 79 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.07 205 23.2 883 CRMSMC SECONDARY STRUCTURE . . 8.27 135 26.3 514 CRMSMC SURFACE . . . . . . . . 11.81 90 18.3 491 CRMSMC BURIED . . . . . . . . 8.45 115 29.3 392 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.96 41 5.9 690 CRMSSC RELIABLE SIDE CHAINS . 9.96 41 7.0 586 CRMSSC SECONDARY STRUCTURE . . 7.73 27 6.7 402 CRMSSC SURFACE . . . . . . . . 11.99 18 4.9 365 CRMSSC BURIED . . . . . . . . 8.01 23 7.1 325 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.07 205 14.6 1402 CRMSALL SECONDARY STRUCTURE . . 8.27 135 16.6 814 CRMSALL SURFACE . . . . . . . . 11.81 90 11.8 761 CRMSALL BURIED . . . . . . . . 8.45 115 17.9 641 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.023 1.000 0.500 41 23.0 178 ERRCA SECONDARY STRUCTURE . . 6.118 1.000 0.500 27 26.2 103 ERRCA SURFACE . . . . . . . . 9.942 1.000 0.500 18 18.2 99 ERRCA BURIED . . . . . . . . 6.520 1.000 0.500 23 29.1 79 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.118 1.000 0.500 205 23.2 883 ERRMC SECONDARY STRUCTURE . . 6.299 1.000 0.500 135 26.3 514 ERRMC SURFACE . . . . . . . . 10.042 1.000 0.500 90 18.3 491 ERRMC BURIED . . . . . . . . 6.612 1.000 0.500 115 29.3 392 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.084 1.000 0.500 41 5.9 690 ERRSC RELIABLE SIDE CHAINS . 8.084 1.000 0.500 41 7.0 586 ERRSC SECONDARY STRUCTURE . . 5.988 1.000 0.500 27 6.7 402 ERRSC SURFACE . . . . . . . . 10.299 1.000 0.500 18 4.9 365 ERRSC BURIED . . . . . . . . 6.350 1.000 0.500 23 7.1 325 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.118 1.000 0.500 205 14.6 1402 ERRALL SECONDARY STRUCTURE . . 6.299 1.000 0.500 135 16.6 814 ERRALL SURFACE . . . . . . . . 10.042 1.000 0.500 90 11.8 761 ERRALL BURIED . . . . . . . . 6.612 1.000 0.500 115 17.9 641 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 2 7 9 18 27 41 178 DISTCA CA (P) 1.12 3.93 5.06 10.11 15.17 178 DISTCA CA (RMS) 0.84 1.50 1.84 3.27 4.99 DISTCA ALL (N) 9 28 46 85 135 205 1402 DISTALL ALL (P) 0.64 2.00 3.28 6.06 9.63 1402 DISTALL ALL (RMS) 0.77 1.32 1.88 3.17 5.04 DISTALL END of the results output