####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 171), selected 22 , name T0534TS365_1_2-D2 # Molecule2: number of CA atoms 176 ( 1347), selected 22 , name T0534-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0534TS365_1_2-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 240 - 256 4.51 8.93 LCS_AVERAGE: 8.81 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 243 - 256 1.09 11.72 LCS_AVERAGE: 6.40 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 246 - 256 0.91 12.25 LCS_AVERAGE: 4.86 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT Y 235 Y 235 5 6 9 4 4 4 6 6 6 8 10 10 11 12 13 15 17 17 18 19 21 22 22 LCS_GDT I 236 I 236 5 6 9 4 4 4 6 6 6 8 10 10 11 12 13 15 17 17 18 19 21 22 22 LCS_GDT A 237 A 237 5 6 9 4 4 4 6 6 6 8 10 10 11 12 13 15 17 17 18 19 21 22 22 LCS_GDT N 238 N 238 5 6 12 4 4 4 6 6 6 8 10 10 11 12 13 15 17 17 18 19 21 22 22 LCS_GDT N 239 N 239 5 6 13 3 3 4 5 5 6 8 10 10 11 12 13 14 17 17 18 19 21 22 22 LCS_GDT S 240 S 240 4 6 17 0 3 4 5 6 6 8 8 9 11 12 13 15 17 17 18 19 21 22 22 LCS_GDT N 241 N 241 4 7 17 0 3 4 5 6 7 9 9 11 13 14 16 16 17 17 18 19 21 22 22 LCS_GDT N 242 N 242 4 9 17 3 3 4 5 7 7 9 9 12 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT I 243 I 243 10 14 17 4 7 12 14 14 14 14 14 14 14 15 16 16 16 16 18 19 21 22 22 LCS_GDT N 244 N 244 10 14 17 4 9 12 14 14 14 14 14 14 14 15 16 16 16 16 17 18 21 22 22 LCS_GDT T 245 T 245 10 14 17 4 7 11 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT D 246 D 246 11 14 17 4 7 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT A 247 A 247 11 14 17 3 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT V 248 V 248 11 14 17 3 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT L 249 L 249 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT N 250 N 250 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT P 251 P 251 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT V 252 V 252 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT V 253 V 253 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 LCS_GDT T 254 T 254 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 16 17 18 19 21 22 22 LCS_GDT Q 255 Q 255 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 16 16 16 18 19 22 22 LCS_GDT Y 256 Y 256 11 14 17 8 9 12 14 14 14 14 14 14 14 15 16 16 16 16 18 19 21 22 22 LCS_AVERAGE LCS_A: 6.69 ( 4.86 6.40 8.81 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 9 12 14 14 14 14 14 14 14 15 16 16 17 17 18 19 21 22 22 GDT PERCENT_AT 4.55 5.11 6.82 7.95 7.95 7.95 7.95 7.95 7.95 7.95 8.52 9.09 9.09 9.66 9.66 10.23 10.80 11.93 12.50 12.50 GDT RMS_LOCAL 0.30 0.43 0.89 1.09 1.09 1.09 1.09 1.09 1.09 1.09 2.24 3.19 3.19 5.10 5.09 5.32 5.60 6.11 6.37 6.37 GDT RMS_ALL_AT 13.04 12.91 11.80 11.72 11.72 11.72 11.72 11.72 11.72 11.72 11.16 10.23 10.23 6.68 6.66 6.58 6.55 6.41 6.37 6.37 # Checking swapping # possible swapping detected: Y 235 Y 235 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA Y 235 Y 235 23.997 0 0.042 1.729 27.041 0.000 0.000 LGA I 236 I 236 18.984 0 0.025 0.614 20.734 0.000 0.000 LGA A 237 A 237 22.799 0 0.120 0.122 24.846 0.000 0.000 LGA N 238 N 238 24.007 0 0.609 1.397 28.753 0.000 0.000 LGA N 239 N 239 21.350 0 0.625 0.962 23.353 0.000 0.000 LGA S 240 S 240 17.960 0 0.647 0.869 19.778 0.000 0.000 LGA N 241 N 241 11.309 0 0.704 0.707 13.393 1.310 0.714 LGA N 242 N 242 8.135 0 0.468 0.371 13.639 11.190 5.655 LGA I 243 I 243 1.572 0 0.447 1.328 3.582 68.333 72.143 LGA N 244 N 244 0.388 0 0.139 0.902 3.469 80.000 74.702 LGA T 245 T 245 1.667 0 0.133 0.238 2.055 77.381 75.442 LGA D 246 D 246 1.588 0 0.134 0.586 2.510 79.405 71.131 LGA A 247 A 247 0.920 0 0.129 0.121 1.836 86.190 83.524 LGA V 248 V 248 1.312 0 0.093 0.778 2.447 77.143 75.374 LGA L 249 L 249 1.320 0 0.159 0.429 3.405 81.429 71.310 LGA N 250 N 250 0.685 0 0.076 0.242 1.899 95.238 89.524 LGA P 251 P 251 0.620 0 0.024 0.359 1.418 90.476 87.891 LGA V 252 V 252 0.680 0 0.028 1.334 3.011 95.238 83.742 LGA V 253 V 253 0.714 0 0.104 1.337 3.655 92.857 82.517 LGA T 254 T 254 0.846 0 0.167 0.193 1.642 83.810 84.082 LGA Q 255 Q 255 1.107 0 0.088 0.667 3.448 81.548 72.487 LGA Y 256 Y 256 0.812 0 0.098 0.391 2.461 83.810 78.135 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 171 171 100.00 176 SUMMARY(RMSD_GDC): 6.371 6.331 7.442 6.735 6.298 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 176 4.0 14 1.09 7.812 7.570 1.176 LGA_LOCAL RMSD: 1.091 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.719 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 6.371 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.635299 * X + -0.772219 * Y + -0.008580 * Z + -16.500525 Y_new = 0.157774 * X + 0.140659 * Y + -0.977406 * Z + 60.106441 Z_new = 0.755978 * X + 0.619591 * Y + 0.211197 * Z + -34.089664 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.243421 -0.857147 1.242283 [DEG: 13.9470 -49.1109 71.1776 ] ZXZ: -0.008778 1.357997 0.884224 [DEG: -0.5029 77.8075 50.6623 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0534TS365_1_2-D2 REMARK 2: T0534-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0534TS365_1_2-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 176 4.0 14 1.09 7.570 6.37 REMARK ---------------------------------------------------------- MOLECULE T0534TS365_1_2-D2 USER MOD reduce.3.15.091106 removed 135 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PAR REMARK PFRMAT TS REMARK TARGET T0534 REMARK PARENT N/A ATOM 1 N TYR 235 -40.467 5.641 66.133 1.00 1.00 N ATOM 2 CA TYR 235 -41.284 5.101 67.178 1.00 1.00 C ATOM 3 C TYR 235 -40.782 5.556 68.512 1.00 1.00 C ATOM 4 O TYR 235 -41.567 5.927 69.384 1.00 1.00 O ATOM 6 CB TYR 235 -41.282 3.564 67.183 1.00 1.00 C ATOM 7 CG TYR 235 -40.058 3.515 65.705 1.00 1.00 C ATOM 8 CD1 TYR 235 -40.943 2.742 64.986 1.00 1.00 C ATOM 9 CD2 TYR 235 -38.921 2.879 66.201 1.00 1.00 C ATOM 10 CE1 TYR 235 -40.744 1.385 64.759 1.00 1.00 C ATOM 11 CE2 TYR 235 -38.713 1.518 66.035 1.00 1.00 C ATOM 12 CZ TYR 235 -39.633 0.781 65.322 1.00 1.00 C ATOM 13 OH TYR 235 -39.488 -0.579 65.191 1.00 1.00 H ATOM 14 N ILE 236 -39.451 5.567 68.693 1.00 1.00 N ATOM 15 CA ILE 236 -38.870 5.852 69.973 1.00 1.00 C ATOM 16 C ILE 236 -39.230 7.226 70.441 1.00 1.00 C ATOM 17 O ILE 236 -39.497 7.430 71.625 1.00 1.00 O ATOM 19 CB ILE 236 -37.369 5.745 69.994 1.00 1.00 C ATOM 20 CG1 ILE 236 -36.794 4.542 69.231 1.00 1.00 C ATOM 21 CG2 ILE 236 -36.901 5.803 71.461 1.00 1.00 C ATOM 22 CD1 ILE 236 -37.257 3.191 69.743 1.00 1.00 C ATOM 23 N ALA 237 -39.266 8.212 69.533 1.00 1.00 N ATOM 24 CA ALA 237 -39.492 9.563 69.962 1.00 1.00 C ATOM 25 C ALA 237 -40.803 9.656 70.686 1.00 1.00 C ATOM 26 O ALA 237 -40.905 10.337 71.705 1.00 1.00 O ATOM 28 CB ALA 237 -39.542 10.556 68.789 1.00 1.00 C ATOM 29 N ASN 238 -41.837 8.957 70.190 1.00 1.00 N ATOM 30 CA ASN 238 -43.163 9.042 70.738 1.00 1.00 C ATOM 31 C ASN 238 -43.226 8.529 72.152 1.00 1.00 C ATOM 32 O ASN 238 -43.948 9.082 72.978 1.00 1.00 O ATOM 34 CB ASN 238 -44.188 8.237 69.922 1.00 1.00 C ATOM 35 CG ASN 238 -44.363 8.796 68.540 1.00 1.00 C ATOM 36 OD1 ASN 238 -44.395 8.078 67.538 1.00 1.00 O ATOM 37 ND2 ASN 238 -44.485 10.118 68.435 1.00 1.00 N ATOM 38 N ASN 239 -42.459 7.473 72.479 1.00 1.00 N ATOM 39 CA ASN 239 -42.576 6.789 73.743 1.00 1.00 C ATOM 40 C ASN 239 -42.381 7.693 74.931 1.00 1.00 C ATOM 41 O ASN 239 -41.717 8.724 74.854 1.00 1.00 O ATOM 43 CB ASN 239 -41.580 5.627 73.902 1.00 1.00 C ATOM 44 CG ASN 239 -42.191 4.313 73.514 1.00 1.00 C ATOM 45 OD1 ASN 239 -42.139 3.877 72.361 1.00 1.00 O ATOM 46 ND2 ASN 239 -42.803 3.626 74.476 1.00 1.00 N ATOM 47 N SER 240 -43.012 7.291 76.066 1.00 1.00 N ATOM 48 CA SER 240 -43.002 7.970 77.341 1.00 1.00 C ATOM 49 C SER 240 -41.987 7.320 78.258 1.00 1.00 C ATOM 50 O SER 240 -41.205 6.476 77.822 1.00 1.00 O ATOM 52 CB SER 240 -44.379 7.941 78.036 1.00 1.00 C ATOM 53 OG SER 240 -44.935 6.633 78.010 1.00 1.00 O ATOM 54 N ASN 241 -41.981 7.711 79.563 1.00 1.00 N ATOM 55 CA ASN 241 -41.081 7.173 80.560 1.00 1.00 C ATOM 56 C ASN 241 -41.845 6.367 81.583 1.00 1.00 C ATOM 57 O ASN 241 -43.068 6.456 81.669 1.00 1.00 O ATOM 59 CB ASN 241 -40.301 8.257 81.324 1.00 1.00 C ATOM 60 CG ASN 241 -39.960 9.423 80.442 1.00 1.00 C ATOM 61 OD1 ASN 241 -39.270 9.301 79.428 1.00 1.00 O ATOM 62 ND2 ASN 241 -40.438 10.612 80.804 1.00 1.00 N ATOM 63 N ASN 242 -41.126 5.536 82.383 1.00 1.00 N ATOM 64 CA ASN 242 -41.776 4.643 83.309 1.00 1.00 C ATOM 65 C ASN 242 -41.126 4.739 84.654 1.00 1.00 C ATOM 66 O ASN 242 -39.934 4.491 84.789 1.00 1.00 O ATOM 68 CB ASN 242 -41.682 3.200 82.812 1.00 1.00 C ATOM 69 CG ASN 242 -42.708 2.899 81.754 1.00 1.00 C ATOM 70 OD1 ASN 242 -42.424 2.286 80.722 1.00 1.00 O ATOM 71 ND2 ASN 242 -43.952 3.320 81.976 1.00 1.00 N ATOM 72 N ILE 243 -41.898 5.074 85.708 1.00 1.00 N ATOM 73 CA ILE 243 -41.243 5.490 86.915 1.00 1.00 C ATOM 74 C ILE 243 -41.460 4.483 88.008 1.00 1.00 C ATOM 75 O ILE 243 -42.541 4.375 88.586 1.00 1.00 O ATOM 77 CB ILE 243 -41.687 6.847 87.394 1.00 1.00 C ATOM 78 CG1 ILE 243 -41.503 7.983 86.378 1.00 1.00 C ATOM 79 CG2 ILE 243 -40.997 7.131 88.743 1.00 1.00 C ATOM 80 CD1 ILE 243 -40.068 8.207 85.936 1.00 1.00 C ATOM 81 N ASN 244 -40.406 3.693 88.285 1.00 1.00 N ATOM 82 CA ASN 244 -40.355 2.736 89.355 1.00 1.00 C ATOM 83 C ASN 244 -41.598 1.911 89.368 1.00 1.00 C ATOM 84 O ASN 244 -42.049 1.486 90.430 1.00 1.00 O ATOM 86 CB ASN 244 -40.156 3.364 90.749 1.00 1.00 C ATOM 87 CG ASN 244 -38.720 3.713 90.999 1.00 1.00 C ATOM 88 OD1 ASN 244 -38.352 4.866 91.232 1.00 1.00 O ATOM 89 ND2 ASN 244 -37.843 2.712 90.957 1.00 1.00 N ATOM 90 N THR 245 -43.438 1.934 88.607 1.00 1.00 N ATOM 91 CA THR 245 -43.790 0.390 89.296 1.00 1.00 C ATOM 92 C THR 245 -43.243 -0.750 88.450 1.00 1.00 C ATOM 93 O THR 245 -42.656 -0.555 87.441 1.00 1.00 O ATOM 95 CB THR 245 -45.235 0.289 89.688 1.00 1.00 C ATOM 96 OG1 THR 245 -46.197 0.057 88.522 1.00 1.00 O ATOM 97 CG2 THR 245 -45.796 1.529 90.386 1.00 1.00 C ATOM 98 N ASP 246 -43.381 -1.767 88.886 1.00 1.00 N ATOM 99 CA ASP 246 -42.786 -2.968 88.322 1.00 1.00 C ATOM 100 C ASP 246 -43.294 -3.306 86.650 1.00 1.00 C ATOM 101 O ASP 246 -42.503 -3.705 85.764 1.00 1.00 O ATOM 103 CB ASP 246 -43.241 -4.119 89.261 1.00 1.00 C ATOM 104 CG ASP 246 -42.446 -5.291 89.556 1.00 1.00 C ATOM 105 OD1 ASP 246 -41.253 -5.172 89.920 1.00 1.00 O ATOM 106 OD2 ASP 246 -43.044 -6.331 89.125 1.00 1.00 O ATOM 107 N ALA 247 -44.528 -3.038 86.355 1.00 1.00 N ATOM 108 CA ALA 247 -44.981 -3.156 85.124 1.00 1.00 C ATOM 109 C ALA 247 -44.410 -2.237 84.316 1.00 1.00 C ATOM 110 O ALA 247 -44.063 -2.553 83.159 1.00 1.00 O ATOM 112 CB ALA 247 -46.505 -3.065 85.060 1.00 1.00 C ATOM 113 N VAL 248 -44.293 -1.284 84.684 1.00 1.00 N ATOM 114 CA VAL 248 -43.569 -0.168 83.770 1.00 1.00 C ATOM 115 C VAL 248 -41.989 -0.669 83.489 1.00 1.00 C ATOM 116 O VAL 248 -41.507 -0.539 82.375 1.00 1.00 O ATOM 118 CB VAL 248 -43.505 1.239 84.429 1.00 1.00 C ATOM 119 CG1 VAL 248 -43.368 1.228 85.890 1.00 1.00 C ATOM 120 CG2 VAL 248 -44.683 2.081 84.199 1.00 1.00 C ATOM 121 N LEU 249 -41.526 -1.028 84.144 1.00 1.00 N ATOM 122 CA LEU 249 -40.267 -1.333 84.031 1.00 1.00 C ATOM 123 C LEU 249 -40.019 -2.438 82.967 1.00 1.00 C ATOM 124 O LEU 249 -39.165 -2.314 82.133 1.00 1.00 O ATOM 126 CB LEU 249 -39.700 -1.661 85.377 1.00 1.00 C ATOM 127 CG LEU 249 -39.006 -0.527 86.111 1.00 1.00 C ATOM 128 CD1 LEU 249 -38.920 -0.824 87.594 1.00 1.00 C ATOM 129 CD2 LEU 249 -37.640 -0.219 85.514 1.00 1.00 C ATOM 130 N ASN 250 -40.664 -3.263 82.975 1.00 1.00 N ATOM 131 CA ASN 250 -40.621 -4.269 81.926 1.00 1.00 C ATOM 132 C ASN 250 -40.903 -3.618 80.428 1.00 1.00 C ATOM 133 O ASN 250 -40.237 -3.931 79.439 1.00 1.00 O ATOM 135 CB ASN 250 -41.742 -5.282 82.130 1.00 1.00 C ATOM 136 CG ASN 250 -41.286 -6.513 82.892 1.00 1.00 C ATOM 137 OD1 ASN 250 -40.134 -6.923 82.706 1.00 1.00 O ATOM 138 ND2 ASN 250 -42.176 -7.073 83.680 1.00 1.00 N ATOM 139 N PRO 251 -41.593 -3.062 80.386 1.00 1.00 N ATOM 140 CA PRO 251 -41.964 -2.422 79.131 1.00 1.00 C ATOM 141 C PRO 251 -40.895 -1.446 78.646 1.00 1.00 C ATOM 142 O PRO 251 -40.739 -1.234 77.443 1.00 1.00 O ATOM 143 CB PRO 251 -43.333 -1.731 79.280 1.00 1.00 C ATOM 144 CG PRO 251 -43.745 -2.013 80.722 1.00 1.00 C ATOM 145 CD PRO 251 -43.268 -3.432 80.919 1.00 1.00 C ATOM 146 N VAL 252 -40.174 -0.861 79.599 1.00 1.00 N ATOM 147 CA VAL 252 -39.152 0.043 79.277 1.00 1.00 C ATOM 148 C VAL 252 -37.999 -0.707 78.620 1.00 1.00 C ATOM 149 O VAL 252 -37.424 -0.245 77.631 1.00 1.00 O ATOM 151 CB VAL 252 -38.619 0.770 80.532 1.00 1.00 C ATOM 152 CG1 VAL 252 -39.615 1.823 80.988 1.00 1.00 C ATOM 153 CG2 VAL 252 -37.272 1.415 80.227 1.00 1.00 C ATOM 154 N VAL 253 -37.665 -1.868 79.174 1.00 1.00 N ATOM 155 CA VAL 253 -36.471 -2.776 78.594 1.00 1.00 C ATOM 156 C VAL 253 -36.732 -3.252 77.419 1.00 1.00 C ATOM 157 O VAL 253 -35.859 -3.301 76.552 1.00 1.00 O ATOM 159 CB VAL 253 -36.164 -3.961 79.544 1.00 1.00 C ATOM 160 CG1 VAL 253 -36.116 -3.468 80.992 1.00 1.00 C ATOM 161 CG2 VAL 253 -34.844 -4.617 79.159 1.00 1.00 C ATOM 162 N THR 254 -38.249 -3.776 77.145 1.00 1.00 N ATOM 163 CA THR 254 -38.633 -4.330 75.851 1.00 1.00 C ATOM 164 C THR 254 -38.416 -3.028 74.506 1.00 1.00 C ATOM 165 O THR 254 -37.943 -3.325 73.410 1.00 1.00 O ATOM 167 CB THR 254 -40.088 -4.802 75.887 1.00 1.00 C ATOM 168 OG1 THR 254 -40.332 -5.965 76.841 1.00 1.00 O ATOM 169 CG2 THR 254 -40.611 -5.285 74.542 1.00 1.00 C ATOM 170 N GLN 255 -38.745 -1.982 74.805 1.00 1.00 N ATOM 171 CA GLN 255 -38.569 -0.836 73.922 1.00 1.00 C ATOM 172 C GLN 255 -37.241 -0.523 73.850 1.00 1.00 C ATOM 173 O GLN 255 -36.769 -0.008 72.838 1.00 1.00 O ATOM 175 CB GLN 255 -39.376 0.353 74.451 1.00 1.00 C ATOM 176 CG GLN 255 -40.896 0.214 74.468 1.00 1.00 C ATOM 177 CD GLN 255 -41.482 0.099 73.072 1.00 1.00 C ATOM 178 OE1 GLN 255 -41.547 -0.991 72.496 1.00 1.00 O ATOM 179 NE2 GLN 255 -41.923 1.213 72.523 1.00 1.00 N ATOM 180 N TYR 256 -36.609 -0.805 74.888 1.00 1.00 N ATOM 181 CA TYR 256 -35.457 -0.451 75.041 1.00 1.00 C ATOM 182 C TYR 256 -34.531 -0.872 73.890 1.00 1.00 C ATOM 183 O TYR 256 -33.836 -0.029 73.314 1.00 1.00 O ATOM 185 CB TYR 256 -34.920 -0.959 76.387 1.00 1.00 C ATOM 186 CG TYR 256 -33.680 -0.156 76.758 1.00 1.00 C ATOM 187 CD1 TYR 256 -33.730 0.950 77.578 1.00 1.00 C ATOM 188 CD2 TYR 256 -32.435 -0.500 76.231 1.00 1.00 C ATOM 189 CE1 TYR 256 -32.609 1.714 77.877 1.00 1.00 C ATOM 190 CE2 TYR 256 -31.305 0.267 76.471 1.00 1.00 C ATOM 191 CZ TYR 256 -31.404 1.375 77.284 1.00 1.00 C ATOM 192 OH TYR 256 -30.318 2.190 77.491 1.00 1.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 171 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 65.25 76.2 42 12.0 350 ARMSMC SECONDARY STRUCTURE . . 9.17 100.0 25 11.0 228 ARMSMC SURFACE . . . . . . . . 70.44 72.4 29 13.9 208 ARMSMC BURIED . . . . . . . . 51.81 84.6 13 9.2 142 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.25 45.0 20 13.7 146 ARMSSC1 RELIABLE SIDE CHAINS . 81.22 52.9 17 12.4 137 ARMSSC1 SECONDARY STRUCTURE . . 96.17 36.4 11 11.7 94 ARMSSC1 SURFACE . . . . . . . . 70.98 61.5 13 14.4 90 ARMSSC1 BURIED . . . . . . . . 117.96 14.3 7 12.5 56 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.74 35.7 14 13.0 108 ARMSSC2 RELIABLE SIDE CHAINS . 95.33 14.3 7 9.5 74 ARMSSC2 SECONDARY STRUCTURE . . 81.23 28.6 7 10.3 68 ARMSSC2 SURFACE . . . . . . . . 82.77 44.4 9 13.0 69 ARMSSC2 BURIED . . . . . . . . 98.58 20.0 5 12.8 39 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.00 0.0 1 3.6 28 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 77.00 0.0 1 4.3 23 ARMSSC3 SURFACE . . . . . . . . 77.00 0.0 1 4.5 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.37 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.37 22 12.5 176 CRMSCA CRN = ALL/NP . . . . . 0.2896 CRMSCA SECONDARY STRUCTURE . . 5.43 13 11.4 114 CRMSCA SURFACE . . . . . . . . 6.37 15 14.3 105 CRMSCA BURIED . . . . . . . . 6.36 7 9.9 71 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.51 110 12.6 873 CRMSMC SECONDARY STRUCTURE . . 5.58 65 11.5 567 CRMSMC SURFACE . . . . . . . . 6.52 75 14.4 521 CRMSMC BURIED . . . . . . . . 6.51 35 9.9 352 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.62 83 12.9 643 CRMSSC RELIABLE SIDE CHAINS . 8.45 61 11.2 543 CRMSSC SECONDARY STRUCTURE . . 8.01 46 11.2 412 CRMSSC SURFACE . . . . . . . . 8.36 53 13.3 398 CRMSSC BURIED . . . . . . . . 9.06 30 12.2 245 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.53 171 12.7 1347 CRMSALL SECONDARY STRUCTURE . . 6.77 98 11.3 868 CRMSALL SURFACE . . . . . . . . 7.37 113 13.8 818 CRMSALL BURIED . . . . . . . . 7.84 58 11.0 529 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.991 0.676 0.338 22 12.5 176 ERRCA SECONDARY STRUCTURE . . 3.992 0.619 0.310 13 11.4 114 ERRCA SURFACE . . . . . . . . 5.023 0.678 0.339 15 14.3 105 ERRCA BURIED . . . . . . . . 4.922 0.673 0.337 7 9.9 71 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.083 0.674 0.337 110 12.6 873 ERRMC SECONDARY STRUCTURE . . 4.091 0.616 0.308 65 11.5 567 ERRMC SURFACE . . . . . . . . 5.124 0.678 0.339 75 14.4 521 ERRMC BURIED . . . . . . . . 4.994 0.666 0.333 35 9.9 352 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.108 0.747 0.373 83 12.9 643 ERRSC RELIABLE SIDE CHAINS . 6.993 0.747 0.374 61 11.2 543 ERRSC SECONDARY STRUCTURE . . 6.321 0.709 0.354 46 11.2 412 ERRSC SURFACE . . . . . . . . 6.960 0.754 0.377 53 13.3 398 ERRSC BURIED . . . . . . . . 7.368 0.733 0.367 30 12.2 245 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.984 0.706 0.353 171 12.7 1347 ERRALL SECONDARY STRUCTURE . . 5.063 0.655 0.328 98 11.3 868 ERRALL SURFACE . . . . . . . . 5.899 0.708 0.354 113 13.8 818 ERRALL BURIED . . . . . . . . 6.149 0.703 0.351 58 11.0 529 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 6 21 22 176 DISTCA CA (P) 0.00 0.00 1.70 3.41 11.93 176 DISTCA CA (RMS) 0.00 0.00 2.34 3.28 6.14 DISTCA ALL (N) 1 5 16 39 145 171 1347 DISTALL ALL (P) 0.07 0.37 1.19 2.90 10.76 1347 DISTALL ALL (RMS) 0.94 1.53 2.25 3.45 6.51 DISTALL END of the results output