####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # ERROR! Check molecule: 1 and the amino acid number 213 and name GLU # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 213 (molecule: 1) # Only one atom (first) is used for calculations. # ERROR! Check molecule: 1 and the amino acid number 215 and name VAL # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 215 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 213 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 215 (molecule: 1) # Only one atom (first) is used for calculations. # Molecule1: number of CA atoms 82 ( 330), selected 82 , name T0534AL285_1-D2 # Molecule2: number of CA atoms 176 ( 1347), selected 82 , name T0534-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0534AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 138 - 158 4.90 23.81 LONGEST_CONTINUOUS_SEGMENT: 21 186 - 206 4.68 15.68 LONGEST_CONTINUOUS_SEGMENT: 21 187 - 207 4.89 16.72 LCS_AVERAGE: 11.11 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 190 - 204 1.68 18.16 LCS_AVERAGE: 5.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 190 - 201 0.62 18.03 LONGEST_CONTINUOUS_SEGMENT: 12 210 - 221 0.64 29.77 LCS_AVERAGE: 4.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 82 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 138 S 138 4 7 21 3 4 4 5 7 13 15 16 18 18 18 20 20 23 26 27 28 30 31 32 LCS_GDT W 139 W 139 4 7 21 3 4 4 4 8 12 15 16 18 18 18 20 21 23 26 27 28 29 31 32 LCS_GDT Y 140 Y 140 4 7 21 3 4 4 6 11 13 13 16 18 18 20 21 23 24 26 27 28 30 31 32 LCS_GDT S 141 S 141 4 7 21 3 4 4 9 11 13 15 16 18 18 20 21 23 24 26 27 28 30 31 33 LCS_GDT W 142 W 142 4 8 21 3 4 6 9 11 13 15 16 18 18 20 21 23 24 26 27 28 34 36 39 LCS_GDT H 143 H 143 5 8 21 4 5 8 9 11 13 15 16 18 18 20 21 23 24 26 27 31 35 36 39 LCS_GDT S 144 S 144 5 8 21 4 5 6 6 11 13 15 16 18 18 20 21 23 24 26 27 28 30 36 38 LCS_GDT R 145 R 145 5 10 21 4 5 6 6 10 13 15 16 18 18 20 21 23 27 32 38 43 46 50 52 LCS_GDT D 146 D 146 5 10 21 4 5 6 8 11 13 15 16 18 22 26 30 35 40 42 44 47 50 53 55 LCS_GDT D 147 D 147 8 10 21 4 5 6 8 11 13 15 16 18 18 20 22 29 34 41 44 46 49 53 55 LCS_GDT Y 148 Y 148 8 10 21 5 7 8 9 11 13 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT T 149 T 149 8 10 21 6 7 13 13 15 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT N 150 N 150 8 10 21 6 7 8 9 11 15 18 19 21 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT N 151 N 151 8 10 21 6 7 8 9 11 14 17 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT I 152 I 152 8 10 21 6 7 8 9 11 13 15 16 18 18 20 23 27 32 39 43 47 50 53 55 LCS_GDT Y 153 Y 153 8 10 21 6 7 8 9 11 13 15 16 18 18 20 24 27 32 33 38 42 46 51 54 LCS_GDT S 154 S 154 8 10 21 6 7 8 9 11 13 15 16 18 18 20 24 28 32 35 38 42 46 51 55 LCS_GDT I 155 I 155 3 3 21 3 3 3 6 6 7 11 15 18 18 23 26 28 32 39 42 47 49 53 55 LCS_GDT R 156 R 156 3 3 21 1 3 4 6 6 6 8 10 11 17 18 23 25 29 33 38 42 46 51 54 LCS_GDT N 157 N 157 3 3 21 3 3 4 5 6 7 9 12 18 20 25 28 32 36 40 43 47 50 53 55 LCS_GDT A 158 A 158 3 3 21 3 3 4 5 6 9 13 17 21 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT Y 159 Y 159 4 6 14 3 4 4 4 5 6 9 14 18 22 26 30 36 40 42 44 47 50 53 55 LCS_GDT Y 160 Y 160 4 6 14 3 4 4 4 7 9 10 15 21 24 27 33 37 40 42 44 47 50 53 55 LCS_GDT G 161 G 161 4 6 16 3 4 6 7 10 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT S 162 S 162 4 6 18 3 4 4 6 7 9 12 18 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT L 163 L 163 4 6 18 3 4 4 4 7 8 10 14 16 22 26 29 35 40 42 44 47 50 53 55 LCS_GDT D 164 D 164 4 6 18 3 4 4 5 7 8 11 15 18 22 26 31 36 40 42 44 47 50 53 55 LCS_GDT G 165 G 165 3 5 18 3 3 3 3 4 5 6 7 9 14 18 22 25 34 38 43 45 48 51 55 LCS_GDT N 168 N 168 3 4 18 3 3 3 3 4 6 6 13 18 23 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 169 A 169 3 4 18 3 3 4 7 9 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT N 170 N 170 3 4 18 3 3 4 6 9 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT S 171 S 171 3 4 18 3 3 3 5 9 11 16 19 20 24 28 32 37 40 42 44 47 50 53 55 LCS_GDT L 172 L 172 3 10 18 3 3 4 5 5 8 10 10 15 19 21 25 29 32 33 39 45 47 50 53 LCS_GDT S 173 S 173 9 10 18 6 9 9 9 9 9 10 10 12 18 23 26 31 35 40 44 46 50 53 55 LCS_GDT T 174 T 174 9 10 18 6 9 9 9 9 9 10 15 20 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT V 175 V 175 9 10 18 6 9 9 9 10 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT I 176 I 176 9 10 18 6 9 9 9 9 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 177 A 177 9 10 18 6 9 9 9 10 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT G 178 G 178 9 10 18 6 9 9 9 9 9 14 18 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 179 A 179 9 10 18 5 9 9 9 9 9 10 10 12 13 19 27 31 38 42 44 47 50 53 55 LCS_GDT N 180 N 180 9 10 18 5 9 9 9 9 9 10 10 12 13 17 28 33 38 42 44 47 50 53 55 LCS_GDT S 181 S 181 9 10 18 5 9 9 9 10 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT S 182 S 182 3 3 17 3 3 3 3 4 4 5 6 7 13 18 21 25 26 28 31 39 46 51 54 LCS_GDT L 183 L 183 4 5 17 4 4 4 5 5 6 8 11 15 16 21 21 25 30 32 36 44 47 51 54 LCS_GDT D 184 D 184 4 5 15 4 4 4 6 6 6 10 14 16 18 22 26 27 30 33 38 44 47 51 54 LCS_GDT T 185 T 185 4 5 16 4 4 4 5 5 8 10 14 15 18 22 26 27 30 33 36 43 46 51 54 LCS_GDT K 186 K 186 4 5 21 4 4 4 5 7 8 16 19 20 24 28 31 36 40 42 44 47 49 53 55 LCS_GDT I 187 I 187 3 5 21 3 4 4 7 9 14 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT K 188 K 188 3 4 21 3 3 3 5 8 11 17 19 21 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT N 189 N 189 3 13 21 0 4 4 7 10 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 190 A 190 12 15 21 8 11 13 13 15 15 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT I 191 I 191 12 15 21 7 11 13 13 15 15 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT Q 192 Q 192 12 15 21 8 11 13 13 15 15 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT K 193 K 193 12 15 21 8 11 13 13 15 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 194 A 194 12 15 21 8 11 13 13 15 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 195 A 195 12 15 21 8 11 13 13 15 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT K 196 K 196 12 15 21 8 11 13 13 15 15 18 19 21 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT A 197 A 197 12 15 21 8 11 13 13 15 15 18 19 21 24 28 33 37 40 42 44 47 50 53 55 LCS_GDT I 198 I 198 12 15 21 8 11 13 13 15 15 18 19 21 24 28 33 37 40 42 44 47 50 53 55 LCS_GDT Q 199 Q 199 12 15 21 8 11 13 13 15 15 17 19 21 24 28 31 34 38 42 44 47 49 53 55 LCS_GDT D 200 D 200 12 15 21 7 11 13 13 15 15 16 19 20 24 28 30 34 35 39 41 44 49 52 54 LCS_GDT I 201 I 201 12 15 21 4 10 13 13 15 15 16 18 18 19 21 25 27 32 36 38 42 45 49 53 LCS_GDT P 202 P 202 3 15 21 3 3 4 5 7 12 15 17 18 19 19 21 22 26 28 33 34 37 48 50 LCS_GDT Q 203 Q 203 3 15 21 3 3 4 11 15 15 16 18 18 19 20 25 27 30 35 38 42 44 48 51 LCS_GDT P 204 P 204 3 15 21 3 3 8 12 15 15 16 18 18 21 26 30 32 35 38 40 43 47 51 54 LCS_GDT F 205 F 205 3 4 21 3 3 4 6 10 14 18 19 21 24 28 33 37 40 42 44 47 50 53 55 LCS_GDT R 206 R 206 4 7 21 3 4 5 5 7 8 10 14 20 23 29 33 37 40 42 44 47 50 53 55 LCS_GDT N 207 N 207 4 7 21 3 4 5 5 6 7 8 10 12 12 13 15 24 31 39 44 46 49 53 55 LCS_GDT H 208 H 208 4 7 20 3 4 5 5 6 7 11 15 19 23 29 33 37 40 42 44 47 50 53 55 LCS_GDT I 209 I 209 5 13 19 3 4 5 10 12 13 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT P 210 P 210 12 13 19 5 10 12 12 12 13 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT S 211 S 211 12 13 19 5 11 12 12 12 13 16 19 23 24 29 33 37 40 42 44 47 50 53 55 LCS_GDT N 212 N 212 12 13 19 10 11 12 12 12 13 13 18 22 24 29 32 37 40 42 44 47 50 53 55 LCS_GDT E 213 E 213 12 13 19 10 11 12 12 12 13 13 14 14 14 15 18 19 21 25 41 46 50 53 55 LCS_GDT T 214 T 214 12 13 19 10 11 12 12 12 13 13 14 14 14 16 18 25 29 38 40 45 50 53 55 LCS_GDT V 215 V 215 12 13 19 10 11 12 12 12 13 13 14 15 17 20 27 31 35 38 43 46 50 53 55 LCS_GDT A 216 A 216 12 13 19 10 11 12 12 12 13 13 14 14 17 20 21 23 28 34 40 45 50 52 55 LCS_GDT A 217 A 217 12 13 19 10 11 12 12 12 13 13 14 14 14 16 18 19 22 25 28 32 34 41 47 LCS_GDT M 218 M 218 12 13 19 10 11 12 12 12 13 13 15 15 18 20 21 23 25 28 33 36 43 45 47 LCS_GDT D 219 D 219 12 13 19 10 11 12 12 12 13 13 14 14 18 20 20 23 25 28 33 36 43 45 47 LCS_GDT A 220 A 220 12 13 19 10 11 12 12 12 13 13 14 14 14 16 18 19 24 26 29 32 34 38 41 LCS_GDT C 221 C 221 12 13 19 10 11 12 12 12 13 13 14 14 14 16 18 19 20 21 23 23 25 27 29 LCS_AVERAGE LCS_A: 6.86 ( 4.05 5.44 11.11 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 11 13 13 15 15 18 19 23 24 29 33 37 40 42 44 47 50 53 55 GDT PERCENT_AT 5.68 6.25 7.39 7.39 8.52 8.52 10.23 10.80 13.07 13.64 16.48 18.75 21.02 22.73 23.86 25.00 26.70 28.41 30.11 31.25 GDT RMS_LOCAL 0.20 0.48 0.76 0.76 1.30 1.30 2.50 2.61 3.35 3.42 3.95 4.35 4.61 4.86 5.06 5.24 5.60 5.93 6.15 6.34 GDT RMS_ALL_AT 29.14 17.78 18.02 18.02 17.63 17.63 12.14 12.10 11.06 11.08 11.02 11.19 11.10 10.96 10.94 10.97 11.14 11.05 10.99 10.95 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 138 S 138 25.364 2 0.623 0.623 25.482 0.000 0.000 LGA W 139 W 139 27.200 10 0.092 0.092 27.629 0.000 0.000 LGA Y 140 Y 140 29.549 8 0.149 0.149 29.549 0.000 0.000 LGA S 141 S 141 26.734 2 0.548 0.548 27.563 0.000 0.000 LGA W 142 W 142 23.612 10 0.410 0.410 25.285 0.000 0.000 LGA H 143 H 143 19.542 6 0.206 0.206 21.460 0.000 0.000 LGA S 144 S 144 18.448 2 0.031 0.031 19.468 0.000 0.000 LGA R 145 R 145 14.707 7 0.013 0.013 16.395 0.000 0.000 LGA D 146 D 146 9.501 4 0.063 0.063 11.698 5.119 2.560 LGA D 147 D 147 10.001 4 0.095 0.095 10.347 6.071 3.036 LGA Y 148 Y 148 7.211 8 0.076 0.076 7.437 19.405 6.468 LGA T 149 T 149 1.607 3 0.020 0.020 3.694 60.238 34.422 LGA N 150 N 150 3.092 4 0.045 0.045 4.935 55.000 27.500 LGA N 151 N 151 3.896 4 0.036 0.036 8.171 34.524 17.262 LGA I 152 I 152 9.208 4 0.023 0.023 12.483 3.690 1.845 LGA Y 153 Y 153 10.666 8 0.101 0.101 13.630 0.714 0.238 LGA S 154 S 154 10.892 2 0.367 0.367 12.883 0.000 0.000 LGA I 155 I 155 9.949 4 0.605 0.605 10.558 0.238 0.119 LGA R 156 R 156 12.171 7 0.561 0.561 12.620 0.000 0.000 LGA N 157 N 157 9.952 4 0.585 0.585 10.240 0.476 0.238 LGA A 158 A 158 6.688 1 0.609 0.609 7.647 13.690 10.952 LGA Y 159 Y 159 7.254 8 0.616 0.616 9.005 7.976 2.659 LGA Y 160 Y 160 7.251 8 0.571 0.571 7.251 16.548 5.516 LGA G 161 G 161 2.827 0 0.454 0.454 5.119 40.952 40.952 LGA S 162 S 162 5.635 2 0.273 0.273 6.272 25.833 17.222 LGA L 163 L 163 9.358 4 0.541 0.541 12.830 1.548 0.774 LGA D 164 D 164 9.541 4 0.206 0.206 11.732 0.833 0.417 LGA G 165 G 165 12.338 0 0.207 0.207 13.951 0.000 0.000 LGA N 168 N 168 6.136 4 0.663 0.663 6.863 20.833 10.417 LGA A 169 A 169 1.337 1 0.323 0.323 2.403 70.952 56.762 LGA N 170 N 170 2.405 4 0.457 0.457 5.578 50.595 25.298 LGA S 171 S 171 4.871 2 0.689 0.689 6.134 28.333 18.889 LGA L 172 L 172 9.520 4 0.238 0.238 9.520 2.976 1.488 LGA S 173 S 173 7.871 2 0.587 0.587 7.871 18.214 12.143 LGA T 174 T 174 5.951 3 0.027 0.027 6.540 28.810 16.463 LGA V 175 V 175 1.966 3 0.073 0.073 3.550 65.952 37.687 LGA I 176 I 176 2.635 4 0.070 0.070 3.711 61.667 30.833 LGA A 177 A 177 0.864 1 0.030 0.030 3.994 70.952 56.762 LGA G 178 G 178 6.286 0 0.060 0.060 9.127 16.429 16.429 LGA A 179 A 179 8.368 1 0.013 0.013 10.298 5.238 4.190 LGA N 180 N 180 7.577 4 0.085 0.085 7.577 16.190 8.095 LGA S 181 S 181 2.759 2 0.016 0.016 4.790 43.810 29.206 LGA S 182 S 182 14.113 2 0.613 0.613 14.525 0.000 0.000 LGA L 183 L 183 13.314 4 0.253 0.253 13.414 0.000 0.000 LGA D 184 D 184 14.220 4 0.044 0.044 14.220 0.000 0.000 LGA T 185 T 185 14.865 3 0.129 0.129 14.865 0.000 0.000 LGA K 186 K 186 7.698 5 0.604 0.604 10.346 10.357 4.603 LGA I 187 I 187 2.844 4 0.581 0.581 4.589 47.143 23.571 LGA K 188 K 188 4.519 5 0.598 0.598 4.519 45.714 20.317 LGA N 189 N 189 1.942 4 0.616 0.616 2.420 72.976 36.488 LGA A 190 A 190 6.741 1 0.582 0.582 6.741 20.833 16.667 LGA I 191 I 191 5.894 4 0.092 0.092 6.322 24.048 12.024 LGA Q 192 Q 192 4.886 5 0.000 0.000 5.400 37.738 16.772 LGA K 193 K 193 2.976 5 0.019 0.019 3.787 57.619 25.608 LGA A 194 A 194 3.108 1 0.046 0.046 3.195 59.405 47.524 LGA A 195 A 195 1.946 1 0.032 0.032 2.268 70.833 56.667 LGA K 196 K 196 2.399 5 0.051 0.051 3.343 63.095 28.042 LGA A 197 A 197 2.704 1 0.018 0.018 4.293 54.286 43.429 LGA I 198 I 198 3.135 4 0.057 0.057 4.630 45.476 22.738 LGA Q 199 Q 199 4.541 5 0.044 0.044 6.859 29.048 12.910 LGA D 200 D 200 6.656 4 0.128 0.128 8.588 11.190 5.595 LGA I 201 I 201 8.724 4 0.669 0.669 11.449 3.214 1.607 LGA P 202 P 202 11.329 3 0.240 0.240 11.329 1.310 0.748 LGA Q 203 Q 203 9.309 5 0.653 0.653 10.376 1.786 0.794 LGA P 204 P 204 6.843 3 0.089 0.089 8.857 9.524 5.442 LGA F 205 F 205 3.252 7 0.611 0.611 6.080 35.357 12.857 LGA R 206 R 206 6.354 7 0.643 0.643 9.361 16.667 6.061 LGA N 207 N 207 10.779 4 0.037 0.037 12.529 0.714 0.357 LGA H 208 H 208 9.368 6 0.494 0.494 9.368 2.857 1.143 LGA I 209 I 209 11.901 4 0.541 0.541 11.901 0.000 0.000 LGA P 210 P 210 11.412 3 0.178 0.178 11.601 0.000 0.000 LGA S 211 S 211 11.434 2 0.026 0.026 13.801 0.000 0.000 LGA N 212 N 212 13.204 4 0.063 0.063 15.124 0.000 0.000 LGA E 213 E 213 15.501 5 0.020 0.020 17.209 0.000 0.000 LGA T 214 T 214 16.730 3 0.034 0.034 17.927 0.000 0.000 LGA V 215 V 215 16.699 3 0.028 0.028 18.163 0.000 0.000 LGA A 216 A 216 17.379 1 0.018 0.018 19.067 0.000 0.000 LGA A 217 A 217 19.727 1 0.024 0.024 21.387 0.000 0.000 LGA M 218 M 218 20.766 4 0.008 0.008 21.918 0.000 0.000 LGA D 219 D 219 20.314 4 0.050 0.050 21.693 0.000 0.000 LGA A 220 A 220 21.654 1 0.018 0.018 23.345 0.000 0.000 LGA C 221 C 221 23.875 2 0.049 0.049 25.175 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 82 328 328 100.00 636 328 51.57 176 SUMMARY(RMSD_GDC): 10.713 10.700 10.700 8.608 5.107 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 82 176 4.0 19 2.61 12.358 10.633 0.700 LGA_LOCAL RMSD: 2.613 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.103 Number of assigned atoms: 82 Std_ASGN_ATOMS RMSD: 10.713 Standard rmsd on all 82 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.157967 * X + -0.882452 * Y + 0.443086 * Z + -54.435738 Y_new = -0.888145 * X + -0.323087 * Y + -0.326824 * Z + 37.421570 Z_new = 0.431562 * X + -0.341897 * Y + -0.834782 * Z + 100.007088 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.394775 -0.446223 -2.752868 [DEG: -79.9147 -25.5667 -157.7277 ] ZXZ: 0.935273 2.558533 2.240783 [DEG: 53.5872 146.5932 128.3874 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0534AL285_1-D2 REMARK 2: T0534-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0534AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 82 176 4.0 19 2.61 10.633 10.71 REMARK ---------------------------------------------------------- MOLECULE T0534AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2jl4A ATOM 1 N SER 138 -34.304 5.595 70.138 1.00 0.00 N ATOM 2 CA SER 138 -35.033 4.565 69.424 1.00 0.00 C ATOM 3 C SER 138 -34.270 4.254 68.156 1.00 0.00 C ATOM 4 O SER 138 -33.709 5.160 67.532 1.00 0.00 O ATOM 5 N TRP 139 -34.237 2.983 67.765 1.00 0.00 N ATOM 6 CA TRP 139 -33.357 2.569 66.666 1.00 0.00 C ATOM 7 C TRP 139 -33.628 3.265 65.335 1.00 0.00 C ATOM 8 O TRP 139 -32.697 3.767 64.714 1.00 0.00 O ATOM 9 N TYR 140 -34.891 3.329 64.913 1.00 0.00 N ATOM 10 CA TYR 140 -35.226 3.951 63.626 1.00 0.00 C ATOM 11 C TYR 140 -35.507 5.457 63.691 1.00 0.00 C ATOM 12 O TYR 140 -35.698 6.094 62.656 1.00 0.00 O ATOM 13 N SER 141 -35.484 6.031 64.888 1.00 0.00 N ATOM 14 CA SER 141 -35.578 7.485 65.035 1.00 0.00 C ATOM 15 C SER 141 -34.424 8.210 64.330 1.00 0.00 C ATOM 16 O SER 141 -33.245 7.947 64.611 1.00 0.00 O ATOM 17 N TRP 142 -34.772 9.108 63.405 1.00 0.00 N ATOM 18 CA TRP 142 -33.786 9.879 62.642 1.00 0.00 C ATOM 19 C TRP 142 -32.914 10.806 63.495 1.00 0.00 C ATOM 20 O TRP 142 -31.694 10.896 63.281 1.00 0.00 O ATOM 21 N HIS 143 -33.542 11.486 64.459 1.00 0.00 N ATOM 22 CA HIS 143 -32.834 12.335 65.412 1.00 0.00 C ATOM 23 C HIS 143 -31.954 11.509 66.363 1.00 0.00 C ATOM 24 O HIS 143 -30.834 11.910 66.660 1.00 0.00 O ATOM 25 N SER 144 -32.453 10.361 66.829 1.00 0.00 N ATOM 26 CA SER 144 -31.632 9.418 67.611 1.00 0.00 C ATOM 27 C SER 144 -30.361 9.017 66.847 1.00 0.00 C ATOM 28 O SER 144 -29.243 9.043 67.391 1.00 0.00 O ATOM 29 N ARG 145 -30.562 8.632 65.587 1.00 0.00 N ATOM 30 CA ARG 145 -29.493 8.253 64.679 1.00 0.00 C ATOM 31 C ARG 145 -28.499 9.404 64.500 1.00 0.00 C ATOM 32 O ARG 145 -27.288 9.202 64.534 1.00 0.00 O ATOM 33 N ASP 146 -29.028 10.607 64.311 1.00 0.00 N ATOM 34 CA ASP 146 -28.225 11.818 64.215 1.00 0.00 C ATOM 35 C ASP 146 -27.293 11.969 65.432 1.00 0.00 C ATOM 36 O ASP 146 -26.084 12.179 65.282 1.00 0.00 O ATOM 37 N ASP 147 -27.864 11.847 66.626 1.00 0.00 N ATOM 38 CA ASP 147 -27.094 12.004 67.858 1.00 0.00 C ATOM 39 C ASP 147 -26.069 10.889 68.048 1.00 0.00 C ATOM 40 O ASP 147 -24.940 11.151 68.480 1.00 0.00 O ATOM 41 N TYR 148 -24.447 9.184 65.702 1.00 0.00 N ATOM 42 CA TYR 148 -23.281 9.505 64.864 1.00 0.00 C ATOM 43 C TYR 148 -22.330 10.496 65.559 1.00 0.00 C ATOM 44 O TYR 148 -21.117 10.250 65.627 1.00 0.00 O ATOM 45 N THR 149 -22.882 11.598 66.072 1.00 0.00 N ATOM 46 CA THR 149 -22.080 12.628 66.743 1.00 0.00 C ATOM 47 C THR 149 -21.336 12.082 67.962 1.00 0.00 C ATOM 48 O THR 149 -20.156 12.371 68.146 1.00 0.00 O ATOM 49 N ASN 150 -22.033 11.292 68.777 1.00 0.00 N ATOM 50 CA ASN 150 -21.440 10.635 69.941 1.00 0.00 C ATOM 51 C ASN 150 -20.331 9.654 69.541 1.00 0.00 C ATOM 52 O ASN 150 -19.252 9.639 70.146 1.00 0.00 O ATOM 53 N ASN 151 -20.601 8.846 68.514 1.00 0.00 N ATOM 54 CA ASN 151 -19.614 7.901 67.987 1.00 0.00 C ATOM 55 C ASN 151 -18.365 8.577 67.405 1.00 0.00 C ATOM 56 O ASN 151 -17.252 8.111 67.643 1.00 0.00 O ATOM 57 N ILE 152 -18.556 9.664 66.654 1.00 0.00 N ATOM 58 CA ILE 152 -17.444 10.443 66.075 1.00 0.00 C ATOM 59 C ILE 152 -16.537 11.059 67.153 1.00 0.00 C ATOM 60 O ILE 152 -15.306 11.078 67.018 1.00 0.00 O ATOM 61 N TYR 153 -17.162 11.549 68.223 1.00 0.00 N ATOM 62 CA TYR 153 -16.457 12.087 69.378 1.00 0.00 C ATOM 63 C TYR 153 -15.896 10.969 70.264 1.00 0.00 C ATOM 64 O TYR 153 -15.152 11.233 71.215 1.00 0.00 O ATOM 65 N SER 154 -16.270 9.725 69.952 1.00 0.00 N ATOM 66 CA SER 154 -15.805 8.556 70.694 1.00 0.00 C ATOM 67 C SER 154 -16.228 8.585 72.146 1.00 0.00 C ATOM 68 O SER 154 -15.513 8.087 73.020 1.00 0.00 O ATOM 69 N ILE 155 -17.396 9.168 72.396 1.00 0.00 N ATOM 70 CA ILE 155 -17.941 9.302 73.737 1.00 0.00 C ATOM 71 C ILE 155 -18.822 8.088 74.057 1.00 0.00 C ATOM 72 O ILE 155 -19.755 7.791 73.311 1.00 0.00 O ATOM 73 N ARG 156 -18.532 7.392 75.173 1.00 0.00 N ATOM 74 CA ARG 156 -19.314 6.212 75.547 1.00 0.00 C ATOM 75 C ARG 156 -20.640 6.555 76.238 1.00 0.00 C ATOM 76 O ARG 156 -20.720 7.510 77.003 1.00 0.00 O ATOM 77 N ASN 157 -21.673 5.771 75.956 1.00 0.00 N ATOM 78 CA ASN 157 -22.983 5.974 76.572 1.00 0.00 C ATOM 79 C ASN 157 -23.728 4.650 76.746 1.00 0.00 C ATOM 80 O ASN 157 -23.484 3.687 76.021 1.00 0.00 O ATOM 81 N ALA 158 -24.635 4.619 77.718 1.00 0.00 N ATOM 82 CA ALA 158 -25.562 3.500 77.866 1.00 0.00 C ATOM 83 C ALA 158 -26.794 3.714 76.967 1.00 0.00 C ATOM 84 O ALA 158 -27.455 4.753 77.037 1.00 0.00 O ATOM 85 N TYR 159 -27.072 2.734 76.110 1.00 0.00 N ATOM 86 CA TYR 159 -28.233 2.767 75.224 1.00 0.00 C ATOM 87 C TYR 159 -29.489 2.367 75.996 1.00 0.00 C ATOM 88 O TYR 159 -29.661 1.193 76.356 1.00 0.00 O ATOM 89 N TYR 160 -30.350 3.351 76.254 1.00 0.00 N ATOM 90 CA TYR 160 -31.654 3.116 76.850 1.00 0.00 C ATOM 91 C TYR 160 -32.761 3.300 75.814 1.00 0.00 C ATOM 92 O TYR 160 -33.056 4.423 75.391 1.00 0.00 O ATOM 93 N GLY 161 -33.370 2.189 75.408 1.00 0.00 N ATOM 94 CA GLY 161 -34.407 2.207 74.373 1.00 0.00 C ATOM 95 C GLY 161 -35.758 2.767 74.859 1.00 0.00 C ATOM 96 O GLY 161 -36.256 2.408 75.931 1.00 0.00 O ATOM 97 N SER 162 -36.329 3.660 74.055 1.00 0.00 N ATOM 98 CA SER 162 -37.644 4.216 74.307 1.00 0.00 C ATOM 99 C SER 162 -38.480 3.900 73.064 1.00 0.00 C ATOM 100 O SER 162 -38.326 4.537 72.025 1.00 0.00 O ATOM 101 N LEU 163 -39.354 2.903 73.180 1.00 0.00 N ATOM 102 CA LEU 163 -40.080 2.376 72.035 1.00 0.00 C ATOM 103 C LEU 163 -41.206 3.297 71.567 1.00 0.00 C ATOM 104 O LEU 163 -42.269 3.365 72.203 1.00 0.00 O ATOM 105 N ASP 164 -40.986 3.972 70.438 1.00 0.00 N ATOM 106 CA ASP 164 -41.977 4.915 69.900 1.00 0.00 C ATOM 107 C ASP 164 -43.247 4.226 69.397 1.00 0.00 C ATOM 108 O ASP 164 -44.345 4.757 69.542 1.00 0.00 O ATOM 109 N GLY 165 -43.093 3.040 68.816 1.00 0.00 N ATOM 110 CA GLY 165 -44.242 2.277 68.318 1.00 0.00 C ATOM 111 C GLY 165 -45.165 1.849 69.441 1.00 0.00 C ATOM 112 O GLY 165 -46.384 1.806 69.268 1.00 0.00 O ATOM 113 N ASN 168 -44.572 1.526 70.586 1.00 0.00 N ATOM 114 CA ASN 168 -45.318 1.207 71.814 1.00 0.00 C ATOM 115 C ASN 168 -45.737 2.488 72.536 1.00 0.00 C ATOM 116 O ASN 168 -46.444 2.424 73.538 1.00 0.00 O ATOM 117 N ALA 169 -45.279 3.637 72.038 1.00 0.00 N ATOM 118 CA ALA 169 -45.615 4.958 72.605 1.00 0.00 C ATOM 119 C ALA 169 -45.146 5.127 74.060 1.00 0.00 C ATOM 120 O ALA 169 -45.815 5.780 74.870 1.00 0.00 O ATOM 121 N ASN 170 -43.997 4.530 74.374 1.00 0.00 N ATOM 122 CA ASN 170 -43.401 4.634 75.705 1.00 0.00 C ATOM 123 C ASN 170 -43.016 6.090 76.008 1.00 0.00 C ATOM 124 O ASN 170 -42.960 6.496 77.170 1.00 0.00 O ATOM 125 N SER 171 -42.779 6.865 74.950 1.00 0.00 N ATOM 126 CA SER 171 -42.495 8.296 75.066 1.00 0.00 C ATOM 127 C SER 171 -43.723 9.136 75.456 1.00 0.00 C ATOM 128 O SER 171 -43.582 10.267 75.943 1.00 0.00 O ATOM 129 N LEU 172 -44.922 8.595 75.251 1.00 0.00 N ATOM 130 CA LEU 172 -46.148 9.346 75.561 1.00 0.00 C ATOM 131 C LEU 172 -46.647 9.096 76.975 1.00 0.00 C ATOM 132 O LEU 172 -47.681 9.646 77.392 1.00 0.00 O ATOM 133 N SER 173 -45.895 8.277 77.705 1.00 0.00 N ATOM 134 CA SER 173 -46.204 7.938 79.083 1.00 0.00 C ATOM 135 C SER 173 -45.545 8.918 80.058 1.00 0.00 C ATOM 136 O SER 173 -44.474 9.470 79.774 1.00 0.00 O ATOM 137 N THR 174 -46.212 9.129 81.194 1.00 0.00 N ATOM 138 CA THR 174 -45.729 9.971 82.295 1.00 0.00 C ATOM 139 C THR 174 -44.302 9.639 82.736 1.00 0.00 C ATOM 140 O THR 174 -43.546 10.532 83.108 1.00 0.00 O ATOM 141 N VAL 175 -43.937 8.361 82.685 1.00 0.00 N ATOM 142 CA VAL 175 -42.576 7.941 83.034 1.00 0.00 C ATOM 143 C VAL 175 -41.494 8.633 82.199 1.00 0.00 C ATOM 144 O VAL 175 -40.435 8.998 82.726 1.00 0.00 O ATOM 145 N ILE 176 -41.755 8.830 80.907 1.00 0.00 N ATOM 146 CA ILE 176 -40.769 9.490 80.059 1.00 0.00 C ATOM 147 C ILE 176 -40.848 11.016 80.158 1.00 0.00 C ATOM 148 O ILE 176 -39.836 11.707 80.022 1.00 0.00 O ATOM 149 N ALA 177 -42.048 11.527 80.415 1.00 0.00 N ATOM 150 CA ALA 177 -42.269 12.952 80.627 1.00 0.00 C ATOM 151 C ALA 177 -41.437 13.490 81.794 1.00 0.00 C ATOM 152 O ALA 177 -41.008 14.646 81.779 1.00 0.00 O ATOM 153 N GLY 178 -41.201 12.649 82.796 1.00 0.00 N ATOM 154 CA GLY 178 -40.299 12.998 83.890 1.00 0.00 C ATOM 155 C GLY 178 -38.868 13.268 83.409 1.00 0.00 C ATOM 156 O GLY 178 -38.169 14.092 83.997 1.00 0.00 O ATOM 157 N ALA 179 -38.436 12.560 82.361 1.00 0.00 N ATOM 158 CA ALA 179 -37.112 12.758 81.760 1.00 0.00 C ATOM 159 C ALA 179 -37.090 13.897 80.748 1.00 0.00 C ATOM 160 O ALA 179 -36.176 14.732 80.752 1.00 0.00 O ATOM 161 N ASN 180 -38.085 13.905 79.865 1.00 0.00 N ATOM 162 CA ASN 180 -38.224 14.926 78.837 1.00 0.00 C ATOM 163 C ASN 180 -39.684 15.385 78.720 1.00 0.00 C ATOM 164 O ASN 180 -40.543 14.658 78.193 1.00 0.00 O ATOM 165 N SER 181 -39.968 16.595 79.228 1.00 0.00 N ATOM 166 CA SER 181 -41.327 17.144 79.219 1.00 0.00 C ATOM 167 C SER 181 -41.916 17.249 77.818 1.00 0.00 C ATOM 168 O SER 181 -43.130 17.143 77.668 1.00 0.00 O ATOM 169 N SER 182 -29.005 11.925 79.269 1.00 0.00 N ATOM 170 CA SER 182 -28.611 12.070 80.660 1.00 0.00 C ATOM 171 C SER 182 -27.090 12.055 80.727 1.00 0.00 C ATOM 172 O SER 182 -26.461 11.048 80.408 1.00 0.00 O ATOM 173 N LEU 183 -26.508 13.183 81.122 1.00 0.00 N ATOM 174 CA LEU 183 -25.048 13.327 81.196 1.00 0.00 C ATOM 175 C LEU 183 -24.495 12.854 82.543 1.00 0.00 C ATOM 176 O LEU 183 -23.296 12.966 82.808 1.00 0.00 O ATOM 177 N ASP 184 -25.373 12.317 83.380 1.00 0.00 N ATOM 178 CA ASP 184 -25.014 11.936 84.728 1.00 0.00 C ATOM 179 C ASP 184 -25.551 12.995 85.658 1.00 0.00 C ATOM 180 O ASP 184 -26.231 12.688 86.642 1.00 0.00 O ATOM 181 N THR 185 -25.270 14.250 85.315 1.00 0.00 N ATOM 182 CA THR 185 -25.637 15.401 86.134 1.00 0.00 C ATOM 183 C THR 185 -26.929 16.083 85.676 1.00 0.00 C ATOM 184 O THR 185 -27.600 16.747 86.472 1.00 0.00 O ATOM 185 N LYS 186 -27.272 15.924 84.398 1.00 0.00 N ATOM 186 CA LYS 186 -28.463 16.570 83.816 1.00 0.00 C ATOM 187 C LYS 186 -29.031 15.800 82.620 1.00 0.00 C ATOM 188 O LYS 186 -28.310 15.058 81.950 1.00 0.00 O ATOM 189 N ILE 187 -30.326 15.983 82.367 1.00 0.00 N ATOM 190 CA ILE 187 -30.958 15.452 81.164 1.00 0.00 C ATOM 191 C ILE 187 -31.086 16.541 80.097 1.00 0.00 C ATOM 192 O ILE 187 -31.794 17.539 80.271 1.00 0.00 O ATOM 193 N LYS 188 -30.378 16.325 78.995 1.00 0.00 N ATOM 194 CA LYS 188 -30.370 17.231 77.865 1.00 0.00 C ATOM 195 C LYS 188 -31.382 16.786 76.830 1.00 0.00 C ATOM 196 O LYS 188 -31.501 15.587 76.541 1.00 0.00 O ATOM 197 N ASN 189 -32.101 17.757 76.269 1.00 0.00 N ATOM 198 CA ASN 189 -33.043 17.513 75.175 1.00 0.00 C ATOM 199 C ASN 189 -32.682 18.404 73.976 1.00 0.00 C ATOM 200 O ASN 189 -31.866 19.331 74.115 1.00 0.00 O ATOM 201 N ALA 190 -33.290 18.100 72.821 1.00 0.00 N ATOM 202 CA ALA 190 -33.047 18.777 71.532 1.00 0.00 C ATOM 203 C ALA 190 -31.703 18.422 70.900 1.00 0.00 C ATOM 204 O ALA 190 -30.666 19.010 71.235 1.00 0.00 O ATOM 205 N ILE 191 -31.742 17.480 69.955 1.00 0.00 N ATOM 206 CA ILE 191 -30.527 16.977 69.312 1.00 0.00 C ATOM 207 C ILE 191 -29.641 18.060 68.679 1.00 0.00 C ATOM 208 O ILE 191 -28.425 17.958 68.779 1.00 0.00 O ATOM 209 N GLN 192 -30.230 19.098 68.040 1.00 0.00 N ATOM 210 CA GLN 192 -29.371 20.164 67.495 1.00 0.00 C ATOM 211 C GLN 192 -28.533 20.847 68.574 1.00 0.00 C ATOM 212 O GLN 192 -27.348 21.093 68.354 1.00 0.00 O ATOM 213 N LYS 193 -29.157 21.119 69.722 1.00 0.00 N ATOM 214 CA LYS 193 -28.512 21.742 70.871 1.00 0.00 C ATOM 215 C LYS 193 -27.498 20.808 71.532 1.00 0.00 C ATOM 216 O LYS 193 -26.413 21.250 71.936 1.00 0.00 O ATOM 217 N ALA 194 -27.859 19.529 71.660 1.00 0.00 N ATOM 218 CA ALA 194 -26.972 18.522 72.265 1.00 0.00 C ATOM 219 C ALA 194 -25.698 18.374 71.439 1.00 0.00 C ATOM 220 O ALA 194 -24.599 18.288 71.984 1.00 0.00 O ATOM 221 N ALA 195 -25.853 18.362 70.119 1.00 0.00 N ATOM 222 CA ALA 195 -24.729 18.164 69.215 1.00 0.00 C ATOM 223 C ALA 195 -23.798 19.383 69.238 1.00 0.00 C ATOM 224 O ALA 195 -22.568 19.224 69.255 1.00 0.00 O ATOM 225 N LYS 196 -24.376 20.583 69.269 1.00 0.00 N ATOM 226 CA LYS 196 -23.588 21.800 69.419 1.00 0.00 C ATOM 227 C LYS 196 -22.849 21.772 70.760 1.00 0.00 C ATOM 228 O LYS 196 -21.734 22.292 70.879 1.00 0.00 O ATOM 229 N ALA 197 -23.497 21.171 71.758 1.00 0.00 N ATOM 230 CA ALA 197 -22.930 20.977 73.090 1.00 0.00 C ATOM 231 C ALA 197 -21.729 20.024 73.050 1.00 0.00 C ATOM 232 O ALA 197 -20.694 20.309 73.676 1.00 0.00 O ATOM 233 N ILE 198 -21.873 18.908 72.327 1.00 0.00 N ATOM 234 CA ILE 198 -20.808 17.914 72.206 1.00 0.00 C ATOM 235 C ILE 198 -19.580 18.489 71.505 1.00 0.00 C ATOM 236 O ILE 198 -18.432 18.189 71.883 1.00 0.00 O ATOM 237 N GLN 199 -19.826 19.298 70.476 1.00 0.00 N ATOM 238 CA GLN 199 -18.748 19.910 69.704 1.00 0.00 C ATOM 239 C GLN 199 -17.887 20.819 70.589 1.00 0.00 C ATOM 240 O GLN 199 -16.673 20.830 70.448 1.00 0.00 O ATOM 241 N ASP 200 -18.512 21.542 71.515 1.00 0.00 N ATOM 242 CA ASP 200 -17.780 22.374 72.476 1.00 0.00 C ATOM 243 C ASP 200 -17.122 21.545 73.582 1.00 0.00 C ATOM 244 O ASP 200 -15.988 21.833 73.987 1.00 0.00 O ATOM 245 N ILE 201 -17.840 20.535 74.073 1.00 0.00 N ATOM 246 CA ILE 201 -17.375 19.711 75.194 1.00 0.00 C ATOM 247 C ILE 201 -16.260 18.755 74.812 1.00 0.00 C ATOM 248 O ILE 201 -15.378 18.489 75.622 1.00 0.00 O ATOM 249 N PRO 202 -16.312 18.239 73.588 1.00 0.00 N ATOM 250 CA PRO 202 -15.392 17.203 73.125 1.00 0.00 C ATOM 251 C PRO 202 -14.827 17.657 71.791 1.00 0.00 C ATOM 252 O PRO 202 -15.366 17.311 70.744 1.00 0.00 O ATOM 253 N GLN 203 -13.756 18.466 71.828 1.00 0.00 N ATOM 254 CA GLN 203 -13.310 19.177 70.633 1.00 0.00 C ATOM 255 C GLN 203 -12.820 18.283 69.496 1.00 0.00 C ATOM 256 O GLN 203 -12.970 18.659 68.339 1.00 0.00 O ATOM 257 N PRO 204 -12.246 17.124 69.816 1.00 0.00 N ATOM 258 CA PRO 204 -11.623 16.275 68.798 1.00 0.00 C ATOM 259 C PRO 204 -12.413 14.986 68.575 1.00 0.00 C ATOM 260 O PRO 204 -12.760 14.307 69.543 1.00 0.00 O ATOM 261 N PHE 205 -12.698 14.646 67.299 1.00 0.00 N ATOM 262 CA PHE 205 -12.456 15.450 66.085 1.00 0.00 C ATOM 263 C PHE 205 -13.480 16.569 65.870 1.00 0.00 C ATOM 264 O PHE 205 -14.658 16.403 66.174 1.00 0.00 O ATOM 265 N ARG 206 -13.015 17.695 65.342 1.00 0.00 N ATOM 266 CA ARG 206 -13.868 18.850 65.077 1.00 0.00 C ATOM 267 C ARG 206 -14.950 18.486 64.071 1.00 0.00 C ATOM 268 O ARG 206 -14.645 17.978 62.989 1.00 0.00 O ATOM 269 N ASN 207 -16.205 18.734 64.446 1.00 0.00 N ATOM 270 CA ASN 207 -17.351 18.524 63.558 1.00 0.00 C ATOM 271 C ASN 207 -17.901 19.828 62.961 1.00 0.00 C ATOM 272 O ASN 207 -18.797 19.803 62.113 1.00 0.00 O ATOM 273 N HIS 208 -17.371 20.963 63.418 1.00 0.00 N ATOM 274 CA HIS 208 -17.644 22.269 62.804 1.00 0.00 C ATOM 275 C HIS 208 -16.324 22.897 62.413 1.00 0.00 C ATOM 276 O HIS 208 -15.364 22.815 63.176 1.00 0.00 O ATOM 277 N ILE 209 -16.261 23.535 61.228 1.00 0.00 N ATOM 278 CA ILE 209 -15.025 24.208 60.784 1.00 0.00 C ATOM 279 C ILE 209 -14.672 25.443 61.622 1.00 0.00 C ATOM 280 O ILE 209 -15.478 25.888 62.436 1.00 0.00 O ATOM 281 N PRO 210 -13.470 25.981 61.429 1.00 0.00 N ATOM 282 CA PRO 210 -12.954 27.033 62.310 1.00 0.00 C ATOM 283 C PRO 210 -13.426 28.427 61.934 1.00 0.00 C ATOM 284 O PRO 210 -13.534 29.305 62.790 1.00 0.00 O ATOM 285 N SER 211 -13.699 28.625 60.649 1.00 0.00 N ATOM 286 CA SER 211 -14.034 29.946 60.120 1.00 0.00 C ATOM 287 C SER 211 -15.543 30.164 60.039 1.00 0.00 C ATOM 288 O SER 211 -16.308 29.225 59.788 1.00 0.00 O ATOM 289 N ASN 212 -15.938 31.424 60.213 1.00 0.00 N ATOM 290 CA ASN 212 -17.343 31.848 60.284 1.00 0.00 C ATOM 291 C ASN 212 -18.179 31.456 59.061 1.00 0.00 C ATOM 292 O ASN 212 -19.279 30.937 59.218 1.00 0.00 O ATOM 293 N GLU 213 -17.650 31.714 57.865 1.00 0.00 N ATOM 294 C GLU 213 -18.571 29.865 56.498 1.00 0.00 C ATOM 295 O GLU 213 -19.661 29.434 56.111 1.00 0.00 O ATOM 296 CA GLU 213 -18.335 31.377 56.615 1.00 0.00 C ATOM 297 CA GLU 213 -18.316 31.370 56.606 1.00 0.00 C ATOM 298 N THR 214 -17.548 29.076 56.835 1.00 0.00 N ATOM 299 CA THR 214 -17.641 27.618 56.850 1.00 0.00 C ATOM 300 C THR 214 -18.656 27.104 57.855 1.00 0.00 C ATOM 301 O THR 214 -19.451 26.217 57.529 1.00 0.00 O ATOM 302 N VAL 215 -18.609 27.642 59.076 1.00 0.00 N ATOM 303 C VAL 215 -21.002 27.512 59.654 1.00 0.00 C ATOM 304 O VAL 215 -21.834 26.608 59.728 1.00 0.00 O ATOM 305 CA VAL 215 -19.569 27.317 60.135 1.00 0.00 C ATOM 306 CA VAL 215 -19.567 27.262 60.110 1.00 0.00 C ATOM 307 N ALA 216 -21.272 28.721 59.162 1.00 0.00 N ATOM 308 CA ALA 216 -22.595 29.120 58.707 1.00 0.00 C ATOM 309 C ALA 216 -23.115 28.139 57.649 1.00 0.00 C ATOM 310 O ALA 216 -24.288 27.796 57.639 1.00 0.00 O ATOM 311 N ALA 217 -22.226 27.681 56.782 1.00 0.00 N ATOM 312 CA ALA 217 -22.616 26.826 55.666 1.00 0.00 C ATOM 313 C ALA 217 -22.923 25.392 56.102 1.00 0.00 C ATOM 314 O ALA 217 -23.881 24.783 55.618 1.00 0.00 O ATOM 315 N MET 218 -22.100 24.864 57.007 1.00 0.00 N ATOM 316 CA MET 218 -22.364 23.579 57.629 1.00 0.00 C ATOM 317 C MET 218 -23.698 23.648 58.405 1.00 0.00 C ATOM 318 O MET 218 -24.555 22.785 58.251 1.00 0.00 O ATOM 319 N ASP 219 -23.866 24.692 59.211 1.00 0.00 N ATOM 320 CA ASP 219 -25.108 24.891 59.958 1.00 0.00 C ATOM 321 C ASP 219 -26.360 24.981 59.074 1.00 0.00 C ATOM 322 O ASP 219 -27.404 24.436 59.437 1.00 0.00 O ATOM 323 N ALA 220 -26.245 25.650 57.925 1.00 0.00 N ATOM 324 CA ALA 220 -27.349 25.777 56.966 1.00 0.00 C ATOM 325 C ALA 220 -27.760 24.435 56.363 1.00 0.00 C ATOM 326 O ALA 220 -28.945 24.136 56.259 1.00 0.00 O ATOM 327 N CYS 221 -26.779 23.629 55.966 1.00 0.00 N ATOM 328 CA CYS 221 -27.046 22.301 55.430 1.00 0.00 C ATOM 329 C CYS 221 -27.756 21.437 56.472 1.00 0.00 C ATOM 330 O CYS 221 -28.747 20.778 56.169 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 330 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 71.91 60.0 160 45.7 350 ARMSMC SECONDARY STRUCTURE . . 65.13 72.0 107 46.9 228 ARMSMC SURFACE . . . . . . . . 68.05 55.4 83 39.9 208 ARMSMC BURIED . . . . . . . . 75.86 64.9 77 54.2 142 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 146 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 137 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 94 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 90 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 56 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 108 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 74 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 68 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 28 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 23 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.69 (Number of atoms: 84) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.69 84 47.7 176 CRMSCA CRN = ALL/NP . . . . . 0.1272 CRMSCA SECONDARY STRUCTURE . . 9.43 56 49.1 114 CRMSCA SURFACE . . . . . . . . 11.48 45 42.9 105 CRMSCA BURIED . . . . . . . . 9.69 39 54.9 71 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.70 330 37.8 873 CRMSMC SECONDARY STRUCTURE . . 9.55 218 38.4 567 CRMSMC SURFACE . . . . . . . . 11.47 174 33.4 521 CRMSMC BURIED . . . . . . . . 9.76 156 44.3 352 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 643 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 543 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 412 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 398 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 245 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.70 330 24.5 1347 CRMSALL SECONDARY STRUCTURE . . 9.55 218 25.1 868 CRMSALL SURFACE . . . . . . . . 11.47 174 21.3 818 CRMSALL BURIED . . . . . . . . 9.76 156 29.5 529 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.330 1.000 0.500 84 47.7 176 ERRCA SECONDARY STRUCTURE . . 8.491 1.000 0.500 56 49.1 114 ERRCA SURFACE . . . . . . . . 10.001 1.000 0.500 45 42.9 105 ERRCA BURIED . . . . . . . . 8.555 1.000 0.500 39 54.9 71 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.328 1.000 0.500 330 37.8 873 ERRMC SECONDARY STRUCTURE . . 8.545 1.000 0.500 218 38.4 567 ERRMC SURFACE . . . . . . . . 10.003 1.000 0.500 174 33.4 521 ERRMC BURIED . . . . . . . . 8.575 1.000 0.500 156 44.3 352 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 643 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 543 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 412 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 398 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 245 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.328 1.000 0.500 330 24.5 1347 ERRALL SECONDARY STRUCTURE . . 8.545 1.000 0.500 218 25.1 868 ERRALL SURFACE . . . . . . . . 10.003 1.000 0.500 174 21.3 818 ERRALL BURIED . . . . . . . . 8.575 1.000 0.500 156 29.5 529 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 3 7 21 51 82 176 DISTCA CA (P) 0.00 1.70 3.98 11.93 28.98 176 DISTCA CA (RMS) 0.00 1.62 2.01 3.78 6.40 DISTCA ALL (N) 2 12 29 76 202 328 1347 DISTALL ALL (P) 0.15 0.89 2.15 5.64 15.00 1347 DISTALL ALL (RMS) 0.66 1.51 2.19 3.50 6.35 DISTALL END of the results output