####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 84 ( 336), selected 84 , name T0533AL396_1-D2 # Molecule2: number of CA atoms 91 ( 657), selected 84 , name T0533-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0533AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 84 90 - 180 3.19 3.19 LCS_AVERAGE: 92.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 54 90 - 145 1.88 3.27 LCS_AVERAGE: 43.59 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 90 - 121 0.95 3.30 LONGEST_CONTINUOUS_SEGMENT: 32 91 - 122 1.00 3.30 LCS_AVERAGE: 21.48 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 84 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 90 I 90 32 54 84 8 30 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT T 91 T 91 32 54 84 8 28 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT F 92 F 92 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT V 93 V 93 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 94 L 94 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT V 95 V 95 32 54 84 12 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 96 A 96 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT R 97 R 97 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT P 98 P 98 32 54 84 4 27 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT G 99 G 99 32 54 84 4 27 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT V 100 V 100 32 54 84 10 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT E 101 E 101 32 54 84 9 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 102 L 102 32 54 84 9 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT S 103 S 103 32 54 84 9 27 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT D 104 D 104 32 54 84 9 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT I 105 I 105 32 54 84 5 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT K 106 K 106 32 54 84 6 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT R 107 R 107 32 54 84 10 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT I 108 I 108 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT S 109 S 109 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT T 110 T 110 32 54 84 15 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT H 111 H 111 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT G 112 G 112 32 54 84 11 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT H 113 H 113 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 114 A 114 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT W 115 W 115 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 116 A 116 32 54 84 10 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT Q 117 Q 117 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT C 118 C 118 32 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT R 119 R 119 32 54 84 11 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 120 L 120 32 54 84 11 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT W 121 W 121 32 54 84 6 24 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT V 122 V 122 32 54 84 5 24 44 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT D 123 D 123 25 54 84 11 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT E 124 E 124 25 54 84 9 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT H 125 H 125 19 54 84 6 21 39 50 60 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 126 L 126 19 54 84 8 13 31 43 54 64 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT P 127 P 127 3 54 84 3 3 15 19 37 45 60 67 74 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT D 130 D 130 12 54 84 11 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT Y 131 Y 131 12 54 84 8 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT V 132 V 132 13 54 84 5 17 43 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT P 133 P 133 13 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT G 134 G 134 13 54 84 8 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT S 135 S 135 13 54 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT S 136 S 136 13 54 84 8 29 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT T 137 T 137 13 54 84 8 12 34 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 138 A 138 13 54 84 8 17 33 53 59 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 139 A 139 13 54 84 9 27 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT S 140 S 140 13 54 84 15 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 141 A 141 13 54 84 9 27 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT M 142 M 142 13 54 84 8 12 21 40 56 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT G 143 G 143 13 54 84 8 12 25 43 56 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 144 L 144 13 54 84 8 18 37 54 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 145 L 145 3 54 84 3 3 7 17 23 35 56 67 73 74 78 80 82 82 82 83 83 84 84 84 LCS_GDT E 146 E 146 3 14 84 3 3 3 4 6 13 18 33 50 59 67 77 78 81 82 83 83 84 84 84 LCS_GDT D 147 D 147 3 9 84 3 3 4 7 13 16 19 22 27 30 38 45 62 72 77 83 83 84 84 84 LCS_GDT A 153 A 153 4 5 84 4 4 6 15 50 63 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 154 A 154 4 6 84 4 4 9 16 40 59 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT I 155 I 155 4 6 84 4 4 8 22 45 60 70 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT C 156 C 156 4 6 84 4 4 9 20 28 52 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 157 A 157 4 6 84 3 4 9 16 36 53 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT P 158 P 158 6 8 84 4 5 9 15 25 51 64 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 159 L 159 6 8 84 4 4 8 8 18 22 33 69 73 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT I 160 I 160 6 8 84 4 5 8 25 41 51 65 69 73 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 161 A 161 6 8 84 4 5 8 8 27 48 60 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 162 A 162 6 8 84 4 5 8 16 22 27 46 56 75 77 81 81 82 82 82 83 83 84 84 84 LCS_GDT E 163 E 163 6 18 84 4 5 8 34 58 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT Q 164 Q 164 6 18 84 3 5 8 30 41 54 60 71 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT P 165 P 165 6 18 84 3 4 8 8 17 26 46 64 73 78 81 81 82 82 82 83 83 84 84 84 LCS_GDT G 166 G 166 15 18 84 4 7 15 34 39 54 62 71 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 167 L 167 15 18 84 4 19 39 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT N 168 N 168 15 18 84 4 13 39 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT V 169 V 169 15 18 84 11 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT L 170 L 170 15 18 84 8 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 171 A 171 15 18 84 8 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT E 172 E 172 15 18 84 8 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT D 173 D 173 15 18 84 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT I 174 I 174 15 18 84 12 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT G 175 G 175 15 18 84 10 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT D 176 D 176 15 18 84 5 19 41 54 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT N 177 N 177 15 18 84 5 14 34 50 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT P 178 P 178 15 18 84 4 20 39 51 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT D 179 D 179 15 18 84 4 19 36 48 61 64 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_GDT A 180 A 180 15 18 84 8 21 42 53 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 LCS_AVERAGE LCS_A: 52.46 ( 21.48 43.59 92.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 34 45 55 61 65 71 72 75 79 81 81 82 82 82 83 83 84 84 84 GDT PERCENT_AT 17.58 37.36 49.45 60.44 67.03 71.43 78.02 79.12 82.42 86.81 89.01 89.01 90.11 90.11 90.11 91.21 91.21 92.31 92.31 92.31 GDT RMS_LOCAL 0.39 0.69 0.92 1.16 1.34 1.56 1.84 1.88 2.13 2.39 2.55 2.55 2.66 2.66 2.66 2.91 2.91 3.19 3.19 3.19 GDT RMS_ALL_AT 3.32 3.31 3.29 3.29 3.29 3.25 3.24 3.25 3.24 3.25 3.25 3.25 3.23 3.23 3.23 3.20 3.20 3.19 3.19 3.19 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 90 I 90 1.223 4 0.129 0.129 1.381 81.429 40.714 LGA T 91 T 91 1.143 3 0.140 0.140 1.289 83.690 47.823 LGA F 92 F 92 0.270 7 0.119 0.119 0.532 97.619 35.498 LGA V 93 V 93 0.251 3 0.042 0.042 0.251 100.000 57.143 LGA L 94 L 94 0.387 4 0.048 0.048 0.531 95.238 47.619 LGA V 95 V 95 0.825 3 0.071 0.071 0.838 90.476 51.701 LGA A 96 A 96 0.583 1 0.125 0.125 1.406 88.214 70.571 LGA R 97 R 97 0.238 7 0.631 0.631 2.768 84.524 30.736 LGA P 98 P 98 1.849 3 0.644 0.644 4.113 61.905 35.374 LGA G 99 G 99 1.633 0 0.154 0.154 2.598 68.929 68.929 LGA V 100 V 100 1.369 3 0.083 0.083 1.503 79.286 45.306 LGA E 101 E 101 1.798 5 0.103 0.103 1.798 72.857 32.381 LGA L 102 L 102 1.841 4 0.050 0.050 1.942 72.857 36.429 LGA S 103 S 103 2.452 2 0.065 0.065 2.452 64.762 43.175 LGA D 104 D 104 2.024 4 0.060 0.060 2.145 68.810 34.405 LGA I 105 I 105 1.597 4 0.055 0.055 1.886 72.857 36.429 LGA K 106 K 106 1.522 5 0.026 0.026 1.589 77.143 34.286 LGA R 107 R 107 1.322 7 0.034 0.034 1.455 81.429 29.610 LGA I 108 I 108 0.548 4 0.085 0.085 0.894 95.238 47.619 LGA S 109 S 109 0.259 2 0.068 0.068 0.383 100.000 66.667 LGA T 110 T 110 0.297 3 0.049 0.049 0.369 100.000 57.143 LGA H 111 H 111 0.558 6 0.039 0.039 0.780 92.857 37.143 LGA G 112 G 112 1.338 0 0.038 0.038 1.338 81.429 81.429 LGA H 113 H 113 1.221 6 0.018 0.018 1.247 85.952 34.381 LGA A 114 A 114 0.617 1 0.059 0.059 0.778 92.857 74.286 LGA W 115 W 115 0.688 10 0.040 0.040 0.936 90.476 25.850 LGA A 116 A 116 1.374 1 0.048 0.048 1.489 81.429 65.143 LGA Q 117 Q 117 1.088 5 0.101 0.101 1.199 88.333 39.259 LGA C 118 C 118 0.508 2 0.036 0.036 0.894 90.476 60.317 LGA R 119 R 119 1.336 7 0.050 0.050 1.601 81.548 29.654 LGA L 120 L 120 1.391 4 0.046 0.046 1.594 77.143 38.571 LGA W 121 W 121 1.898 10 0.054 0.054 1.929 72.857 20.816 LGA V 122 V 122 2.049 3 0.067 0.067 2.297 68.810 39.320 LGA D 123 D 123 1.462 4 0.132 0.132 1.622 77.143 38.571 LGA E 124 E 124 1.443 5 0.068 0.068 1.819 77.143 34.286 LGA H 125 H 125 2.814 6 0.121 0.121 3.461 55.476 22.190 LGA L 126 L 126 3.475 4 0.141 0.141 3.475 55.476 27.738 LGA P 127 P 127 5.412 3 0.655 0.655 5.412 31.786 18.163 LGA D 130 D 130 0.816 4 0.088 0.088 1.337 88.214 44.107 LGA Y 131 Y 131 0.755 8 0.104 0.104 0.755 92.857 30.952 LGA V 132 V 132 1.569 3 0.210 0.210 1.569 81.548 46.599 LGA P 133 P 133 1.175 3 0.050 0.050 1.213 85.952 49.116 LGA G 134 G 134 0.766 0 0.073 0.073 0.808 90.476 90.476 LGA S 135 S 135 0.900 2 0.084 0.084 1.065 88.214 58.810 LGA S 136 S 136 1.296 2 0.062 0.062 1.550 81.548 54.365 LGA T 137 T 137 2.255 3 0.045 0.045 2.255 66.786 38.163 LGA A 138 A 138 2.642 1 0.098 0.098 2.642 62.857 50.286 LGA A 139 A 139 1.467 1 0.075 0.075 1.610 79.286 63.429 LGA S 140 S 140 0.361 2 0.079 0.079 0.524 97.619 65.079 LGA A 141 A 141 1.520 1 0.105 0.105 1.829 75.000 60.000 LGA M 142 M 142 3.355 4 0.093 0.093 3.989 50.119 25.060 LGA G 143 G 143 3.325 0 0.104 0.104 4.133 48.571 48.571 LGA L 144 L 144 2.095 4 0.693 0.693 3.031 61.071 30.536 LGA L 145 L 145 6.797 4 0.728 0.728 9.810 10.000 5.000 LGA E 146 E 146 10.667 5 0.125 0.125 10.667 1.071 0.476 LGA D 147 D 147 12.705 4 0.608 0.608 13.090 0.000 0.000 LGA A 153 A 153 3.436 1 0.113 0.113 4.339 46.786 37.429 LGA A 154 A 154 3.513 1 0.037 0.037 4.304 45.119 36.095 LGA I 155 I 155 3.687 4 0.076 0.076 4.346 45.119 22.560 LGA C 156 C 156 4.170 2 0.214 0.214 4.877 38.810 25.873 LGA A 157 A 157 4.049 1 0.029 0.029 4.258 40.238 32.190 LGA P 158 P 158 5.371 3 0.628 0.628 5.371 30.119 17.211 LGA L 159 L 159 6.025 4 0.596 0.596 6.672 20.833 10.417 LGA I 160 I 160 5.337 4 0.119 0.119 5.371 28.810 14.405 LGA A 161 A 161 5.476 1 0.130 0.130 6.407 26.667 21.333 LGA A 162 A 162 5.694 1 0.096 0.096 5.694 26.429 21.143 LGA E 163 E 163 3.066 5 0.052 0.052 3.333 50.000 22.222 LGA Q 164 Q 164 5.970 5 0.594 0.594 7.897 19.762 8.783 LGA P 165 P 165 7.539 3 0.314 0.314 7.539 10.952 6.259 LGA G 166 G 166 5.729 0 0.110 0.110 5.874 26.429 26.429 LGA L 167 L 167 2.506 4 0.127 0.127 3.590 53.690 26.845 LGA N 168 N 168 2.711 4 0.033 0.033 2.711 65.000 32.500 LGA V 169 V 169 0.853 3 0.110 0.110 1.667 83.810 47.891 LGA L 170 L 170 0.952 4 0.082 0.082 1.193 85.952 42.976 LGA A 171 A 171 0.967 1 0.089 0.089 1.014 88.214 70.571 LGA E 172 E 172 0.641 5 0.117 0.117 0.741 92.857 41.270 LGA D 173 D 173 0.667 4 0.108 0.108 0.667 95.238 47.619 LGA I 174 I 174 0.697 4 0.039 0.039 0.764 90.476 45.238 LGA G 175 G 175 0.898 0 0.061 0.061 1.128 85.952 85.952 LGA D 176 D 176 1.585 4 0.035 0.035 2.173 72.976 36.488 LGA N 177 N 177 2.376 4 0.169 0.169 2.376 66.786 33.393 LGA P 178 P 178 2.102 3 0.098 0.098 2.232 64.762 37.007 LGA D 179 D 179 2.600 4 0.229 0.229 3.026 59.167 29.583 LGA A 180 A 180 2.050 1 0.056 0.056 2.050 68.810 55.048 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 84 336 336 100.00 606 336 55.45 91 SUMMARY(RMSD_GDC): 3.191 3.115 3.115 62.960 36.620 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 84 91 4.0 72 1.88 67.033 64.734 3.641 LGA_LOCAL RMSD: 1.877 Number of atoms: 72 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.247 Number of assigned atoms: 84 Std_ASGN_ATOMS RMSD: 3.191 Standard rmsd on all 84 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.166498 * X + -0.891929 * Y + 0.420405 * Z + 44.441753 Y_new = -0.447519 * X + -0.448269 * Y + -0.773810 * Z + 97.128853 Z_new = 0.878638 * X + -0.059302 * Y + -0.473791 * Z + 55.385033 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.214617 -1.073003 -3.017076 [DEG: -69.5924 -61.4785 -172.8657 ] ZXZ: 0.497679 2.064387 1.638187 [DEG: 28.5149 118.2807 93.8612 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0533AL396_1-D2 REMARK 2: T0533-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0533AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 84 91 4.0 72 1.88 64.734 3.19 REMARK ---------------------------------------------------------- MOLECULE T0533AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2qmw_A ATOM 325 N ILE 90 15.662 22.575 52.227 1.00 0.00 N ATOM 326 CA ILE 90 16.630 21.557 52.376 1.00 0.00 C ATOM 327 C ILE 90 15.885 20.259 52.848 1.00 0.00 C ATOM 328 O ILE 90 15.614 20.130 54.034 1.00 0.00 O ATOM 329 N THR 91 15.693 19.295 51.930 1.00 0.00 N ATOM 330 CA THR 91 14.904 18.075 52.075 1.00 0.00 C ATOM 331 C THR 91 15.784 17.001 51.459 1.00 0.00 C ATOM 332 O THR 91 16.653 17.306 50.685 1.00 0.00 O ATOM 333 N PHE 92 15.555 15.750 51.840 1.00 0.00 N ATOM 334 CA PHE 92 16.358 14.615 51.530 1.00 0.00 C ATOM 335 C PHE 92 15.428 13.458 51.211 1.00 0.00 C ATOM 336 O PHE 92 14.302 13.527 51.627 1.00 0.00 O ATOM 337 N VAL 93 15.924 12.447 50.485 1.00 0.00 N ATOM 338 CA VAL 93 15.248 11.180 50.199 1.00 0.00 C ATOM 339 C VAL 93 16.262 10.066 50.392 1.00 0.00 C ATOM 340 O VAL 93 17.536 10.271 50.316 1.00 0.00 O ATOM 341 N LEU 94 15.672 8.880 50.607 1.00 0.00 N ATOM 342 CA LEU 94 16.340 7.594 50.604 1.00 0.00 C ATOM 343 C LEU 94 16.155 6.901 49.270 1.00 0.00 C ATOM 344 O LEU 94 14.983 6.623 48.825 1.00 0.00 O ATOM 345 N VAL 95 17.308 6.604 48.668 1.00 0.00 N ATOM 346 CA VAL 95 17.494 6.146 47.279 1.00 0.00 C ATOM 347 C VAL 95 18.058 4.759 47.389 1.00 0.00 C ATOM 348 O VAL 95 19.028 4.521 48.160 1.00 0.00 O ATOM 349 N ALA 96 17.456 3.841 46.640 1.00 0.00 N ATOM 350 CA ALA 96 17.854 2.468 46.724 1.00 0.00 C ATOM 351 C ALA 96 17.916 1.772 45.408 1.00 0.00 C ATOM 352 O ALA 96 18.029 2.439 44.357 1.00 0.00 O ATOM 353 N ARG 97 17.856 0.428 45.467 1.00 0.00 N ATOM 354 CA ARG 97 18.050 -0.374 44.244 1.00 0.00 C ATOM 355 C ARG 97 16.783 -0.607 43.389 1.00 0.00 C ATOM 356 O ARG 97 16.738 -1.519 42.577 1.00 0.00 O ATOM 357 N PRO 98 15.746 0.200 43.569 1.00 0.00 N ATOM 358 CA PRO 98 14.508 -0.036 42.798 1.00 0.00 C ATOM 359 C PRO 98 13.663 -1.167 43.421 1.00 0.00 C ATOM 360 O PRO 98 12.470 -1.236 43.193 1.00 0.00 O ATOM 361 N GLY 99 14.285 -2.009 44.261 1.00 0.00 N ATOM 362 CA GLY 99 13.649 -3.253 44.732 1.00 0.00 C ATOM 363 C GLY 99 13.351 -3.111 46.208 1.00 0.00 C ATOM 364 O GLY 99 12.235 -3.368 46.686 1.00 0.00 O ATOM 365 N VAL 100 14.381 -2.687 46.921 1.00 0.00 N ATOM 366 CA VAL 100 14.339 -2.620 48.361 1.00 0.00 C ATOM 367 C VAL 100 13.242 -1.754 48.912 1.00 0.00 C ATOM 368 O VAL 100 12.753 -0.810 48.346 1.00 0.00 O ATOM 369 N GLU 101 12.811 -2.187 50.057 1.00 0.00 N ATOM 370 CA GLU 101 11.920 -1.422 50.768 1.00 0.00 C ATOM 371 C GLU 101 12.801 -1.025 51.939 1.00 0.00 C ATOM 372 O GLU 101 13.954 -1.432 52.070 1.00 0.00 O ATOM 373 N LEU 102 12.209 -0.251 52.797 1.00 0.00 N ATOM 374 CA LEU 102 12.851 0.372 53.877 1.00 0.00 C ATOM 375 C LEU 102 13.208 -0.671 54.986 1.00 0.00 C ATOM 376 O LEU 102 14.321 -0.683 55.580 1.00 0.00 O ATOM 377 N SER 103 12.317 -1.645 55.085 1.00 0.00 N ATOM 378 CA SER 103 12.471 -2.805 55.911 1.00 0.00 C ATOM 379 C SER 103 13.662 -3.631 55.433 1.00 0.00 C ATOM 380 O SER 103 14.308 -4.312 56.223 1.00 0.00 O ATOM 381 N ASP 104 13.958 -3.599 54.142 1.00 0.00 N ATOM 382 CA ASP 104 15.211 -4.214 53.687 1.00 0.00 C ATOM 383 C ASP 104 16.520 -3.478 53.896 1.00 0.00 C ATOM 384 O ASP 104 17.587 -4.092 53.714 1.00 0.00 O ATOM 385 N ILE 105 16.509 -2.195 54.223 1.00 0.00 N ATOM 386 CA ILE 105 17.787 -1.520 54.239 1.00 0.00 C ATOM 387 C ILE 105 18.556 -1.758 55.548 1.00 0.00 C ATOM 388 O ILE 105 18.063 -1.531 56.601 1.00 0.00 O ATOM 389 N LYS 106 19.781 -2.191 55.421 1.00 0.00 N ATOM 390 CA LYS 106 20.738 -2.452 56.483 1.00 0.00 C ATOM 391 C LYS 106 21.697 -1.265 56.671 1.00 0.00 C ATOM 392 O LYS 106 22.161 -0.991 57.781 1.00 0.00 O ATOM 393 N ARG 107 22.018 -0.562 55.566 1.00 0.00 N ATOM 394 CA ARG 107 23.076 0.434 55.593 1.00 0.00 C ATOM 395 C ARG 107 22.873 1.588 54.634 1.00 0.00 C ATOM 396 O ARG 107 22.420 1.396 53.525 1.00 0.00 O ATOM 397 N ILE 108 23.217 2.800 55.079 1.00 0.00 N ATOM 398 CA ILE 108 23.239 3.935 54.214 1.00 0.00 C ATOM 399 C ILE 108 24.631 4.583 54.102 1.00 0.00 C ATOM 400 O ILE 108 25.474 4.563 55.044 1.00 0.00 O ATOM 401 N SER 109 24.819 5.218 52.960 1.00 0.00 N ATOM 402 CA SER 109 26.002 6.027 52.686 1.00 0.00 C ATOM 403 C SER 109 25.519 7.377 52.312 1.00 0.00 C ATOM 404 O SER 109 24.556 7.491 51.527 1.00 0.00 O ATOM 405 N THR 110 26.217 8.398 52.817 1.00 0.00 N ATOM 406 CA THR 110 25.810 9.762 52.578 1.00 0.00 C ATOM 407 C THR 110 26.950 10.712 52.830 1.00 0.00 C ATOM 408 O THR 110 27.931 10.379 53.509 1.00 0.00 O ATOM 409 N HIS 111 26.851 11.872 52.194 1.00 0.00 N ATOM 410 CA HIS 111 27.724 12.983 52.553 1.00 0.00 C ATOM 411 C HIS 111 27.358 13.442 53.942 1.00 0.00 C ATOM 412 O HIS 111 26.193 13.393 54.393 1.00 0.00 O ATOM 413 N GLY 112 28.388 13.897 54.611 1.00 0.00 N ATOM 414 CA GLY 112 28.348 14.342 55.964 1.00 0.00 C ATOM 415 C GLY 112 27.201 15.279 56.356 1.00 0.00 C ATOM 416 O GLY 112 26.645 15.157 57.429 1.00 0.00 O ATOM 417 N HIS 113 26.962 16.321 55.540 1.00 0.00 N ATOM 418 CA HIS 113 25.929 17.333 55.745 1.00 0.00 C ATOM 419 C HIS 113 24.539 16.692 55.764 1.00 0.00 C ATOM 420 O HIS 113 23.669 17.111 56.541 1.00 0.00 O ATOM 421 N ALA 114 24.334 15.727 54.888 1.00 0.00 N ATOM 422 CA ALA 114 23.063 15.051 54.777 1.00 0.00 C ATOM 423 C ALA 114 22.806 14.160 56.043 1.00 0.00 C ATOM 424 O ALA 114 21.690 14.061 56.551 1.00 0.00 O ATOM 425 N TRP 115 23.850 13.528 56.554 1.00 0.00 N ATOM 426 CA TRP 115 23.724 12.636 57.780 1.00 0.00 C ATOM 427 C TRP 115 23.277 13.503 58.933 1.00 0.00 C ATOM 428 O TRP 115 22.355 13.209 59.652 1.00 0.00 O ATOM 429 N ALA 116 23.894 14.655 59.039 1.00 0.00 N ATOM 430 CA ALA 116 23.646 15.590 60.096 1.00 0.00 C ATOM 431 C ALA 116 22.235 16.135 60.045 1.00 0.00 C ATOM 432 O ALA 116 21.747 16.561 61.034 1.00 0.00 O ATOM 433 N GLN 117 21.607 16.213 58.888 1.00 0.00 N ATOM 434 CA GLN 117 20.285 16.705 58.823 1.00 0.00 C ATOM 435 C GLN 117 19.213 15.541 58.958 1.00 0.00 C ATOM 436 O GLN 117 18.103 15.833 59.217 1.00 0.00 O ATOM 437 N CYS 118 19.581 14.280 58.739 1.00 0.00 N ATOM 438 CA CYS 118 18.742 13.147 58.812 1.00 0.00 C ATOM 439 C CYS 118 19.049 12.185 59.958 1.00 0.00 C ATOM 440 O CYS 118 18.621 11.037 59.920 1.00 0.00 O ATOM 441 N ARG 119 19.748 12.655 60.991 1.00 0.00 N ATOM 442 CA ARG 119 20.255 11.759 62.065 1.00 0.00 C ATOM 443 C ARG 119 19.100 11.034 62.889 1.00 0.00 C ATOM 444 O ARG 119 19.136 9.812 63.045 1.00 0.00 O ATOM 445 N LEU 120 18.056 11.781 63.314 1.00 0.00 N ATOM 446 CA LEU 120 16.809 11.189 63.928 1.00 0.00 C ATOM 447 C LEU 120 16.248 10.136 63.056 1.00 0.00 C ATOM 448 O LEU 120 15.954 9.086 63.557 1.00 0.00 O ATOM 449 N TRP 121 16.223 10.367 61.731 1.00 0.00 N ATOM 450 CA TRP 121 15.853 9.351 60.754 1.00 0.00 C ATOM 451 C TRP 121 16.633 8.106 60.755 1.00 0.00 C ATOM 452 O TRP 121 16.059 6.952 60.693 1.00 0.00 O ATOM 453 N VAL 122 17.939 8.308 60.728 1.00 0.00 N ATOM 454 CA VAL 122 18.901 7.219 60.731 1.00 0.00 C ATOM 455 C VAL 122 18.738 6.345 62.023 1.00 0.00 C ATOM 456 O VAL 122 18.849 5.122 61.975 1.00 0.00 O ATOM 457 N ASP 123 18.508 7.006 63.133 1.00 0.00 N ATOM 458 CA ASP 123 18.421 6.413 64.462 1.00 0.00 C ATOM 459 C ASP 123 17.112 5.629 64.588 1.00 0.00 C ATOM 460 O ASP 123 17.090 4.466 64.846 1.00 0.00 O ATOM 461 N GLU 124 16.004 6.284 64.269 1.00 0.00 N ATOM 462 CA GLU 124 14.637 5.619 64.256 1.00 0.00 C ATOM 463 C GLU 124 14.697 4.314 63.552 1.00 0.00 C ATOM 464 O GLU 124 14.035 3.348 63.944 1.00 0.00 O ATOM 465 N HIS 125 15.417 4.292 62.441 1.00 0.00 N ATOM 466 CA HIS 125 15.512 3.109 61.602 1.00 0.00 C ATOM 467 C HIS 125 16.691 2.182 61.831 1.00 0.00 C ATOM 468 O HIS 125 16.836 1.132 61.165 1.00 0.00 O ATOM 469 N LEU 126 17.584 2.594 62.729 1.00 0.00 N ATOM 470 CA LEU 126 18.720 1.789 63.100 1.00 0.00 C ATOM 471 C LEU 126 19.549 1.425 61.869 1.00 0.00 C ATOM 472 O LEU 126 20.122 0.356 61.836 1.00 0.00 O ATOM 473 N PRO 127 19.597 2.262 60.832 1.00 0.00 N ATOM 474 CA PRO 127 20.623 2.080 59.789 1.00 0.00 C ATOM 475 C PRO 127 22.046 2.231 60.337 1.00 0.00 C ATOM 476 O PRO 127 22.326 3.086 61.151 1.00 0.00 O ATOM 477 N ASP 130 22.923 1.344 59.892 1.00 0.00 N ATOM 478 CA ASP 130 24.297 1.609 59.945 1.00 0.00 C ATOM 479 C ASP 130 24.601 2.616 58.829 1.00 0.00 C ATOM 480 O ASP 130 23.865 2.675 57.821 1.00 0.00 O ATOM 481 N TYR 131 25.679 3.386 58.983 1.00 0.00 N ATOM 482 CA TYR 131 26.018 4.360 57.964 1.00 0.00 C ATOM 483 C TYR 131 27.498 4.640 57.873 1.00 0.00 C ATOM 484 O TYR 131 28.251 4.425 58.817 1.00 0.00 O ATOM 485 N VAL 132 27.872 5.199 56.737 1.00 0.00 N ATOM 486 CA VAL 132 29.204 5.677 56.530 1.00 0.00 C ATOM 487 C VAL 132 29.147 6.836 55.523 1.00 0.00 C ATOM 488 O VAL 132 28.176 7.013 54.839 1.00 0.00 O ATOM 489 N PRO 133 30.238 7.587 55.443 1.00 0.00 N ATOM 490 CA PRO 133 30.355 8.795 54.654 1.00 0.00 C ATOM 491 C PRO 133 30.980 8.573 53.365 1.00 0.00 C ATOM 492 O PRO 133 31.885 7.745 53.206 1.00 0.00 O ATOM 493 N GLY 134 30.544 9.391 52.432 1.00 0.00 N ATOM 494 CA GLY 134 31.090 9.341 51.096 1.00 0.00 C ATOM 495 C GLY 134 31.374 10.810 50.753 1.00 0.00 C ATOM 496 O GLY 134 30.940 11.682 51.492 1.00 0.00 O ATOM 497 N SER 135 32.109 11.103 49.678 1.00 0.00 N ATOM 498 CA SER 135 32.544 12.482 49.406 1.00 0.00 C ATOM 499 C SER 135 31.501 13.261 48.572 1.00 0.00 C ATOM 500 O SER 135 31.551 14.497 48.508 1.00 0.00 O ATOM 501 N SER 136 30.506 12.567 48.002 1.00 0.00 N ATOM 502 CA SER 136 29.559 13.235 47.148 1.00 0.00 C ATOM 503 C SER 136 28.281 12.415 46.871 1.00 0.00 C ATOM 504 O SER 136 28.255 11.198 47.044 1.00 0.00 O ATOM 505 N THR 137 27.200 13.064 46.429 1.00 0.00 N ATOM 506 CA THR 137 26.032 12.256 46.175 1.00 0.00 C ATOM 507 C THR 137 26.186 11.118 45.139 1.00 0.00 C ATOM 508 O THR 137 25.755 9.989 45.397 1.00 0.00 O ATOM 509 N ALA 138 26.882 11.344 44.033 1.00 0.00 N ATOM 510 CA ALA 138 27.103 10.254 43.070 1.00 0.00 C ATOM 511 C ALA 138 27.865 9.128 43.682 1.00 0.00 C ATOM 512 O ALA 138 27.675 8.006 43.281 1.00 0.00 O ATOM 513 N ALA 139 28.789 9.428 44.584 1.00 0.00 N ATOM 514 CA ALA 139 29.466 8.398 45.342 1.00 0.00 C ATOM 515 C ALA 139 28.466 7.500 46.150 1.00 0.00 C ATOM 516 O ALA 139 28.482 6.311 45.991 1.00 0.00 O ATOM 517 N SER 140 27.629 8.116 46.970 1.00 0.00 N ATOM 518 CA SER 140 26.448 7.535 47.597 1.00 0.00 C ATOM 519 C SER 140 25.839 6.527 46.722 1.00 0.00 C ATOM 520 O SER 140 25.744 5.397 47.117 1.00 0.00 O ATOM 521 N ALA 141 25.443 6.985 45.528 1.00 0.00 N ATOM 522 CA ALA 141 24.637 6.235 44.613 1.00 0.00 C ATOM 523 C ALA 141 25.374 4.962 44.197 1.00 0.00 C ATOM 524 O ALA 141 24.736 3.966 43.882 1.00 0.00 O ATOM 525 N MET 142 26.712 4.995 44.256 1.00 0.00 N ATOM 526 CA MET 142 27.517 3.869 43.789 1.00 0.00 C ATOM 527 C MET 142 27.585 2.816 44.855 1.00 0.00 C ATOM 528 O MET 142 28.014 1.722 44.574 1.00 0.00 O ATOM 529 N GLY 143 27.173 3.141 46.073 1.00 0.00 N ATOM 530 CA GLY 143 27.200 2.120 47.129 1.00 0.00 C ATOM 531 C GLY 143 25.921 1.285 47.142 1.00 0.00 C ATOM 532 O GLY 143 25.837 0.279 47.825 1.00 0.00 O ATOM 533 N LEU 144 24.962 1.680 46.311 1.00 0.00 N ATOM 534 CA LEU 144 23.664 1.061 46.295 1.00 0.00 C ATOM 535 C LEU 144 23.822 -0.355 45.772 1.00 0.00 C ATOM 536 O LEU 144 24.551 -0.571 44.785 1.00 0.00 O ATOM 537 N LEU 145 23.171 -1.303 46.474 1.00 0.00 N ATOM 538 CA LEU 145 23.093 -2.738 46.140 1.00 0.00 C ATOM 539 C LEU 145 22.000 -3.302 47.115 1.00 0.00 C ATOM 540 O LEU 145 21.334 -2.510 47.844 1.00 0.00 O ATOM 541 N GLU 146 21.818 -4.622 47.166 1.00 0.00 N ATOM 542 CA GLU 146 20.791 -5.199 48.040 1.00 0.00 C ATOM 543 C GLU 146 21.049 -4.855 49.482 1.00 0.00 C ATOM 544 O GLU 146 22.201 -5.043 49.975 1.00 0.00 O ATOM 545 N ASP 147 20.027 -4.300 50.148 1.00 0.00 N ATOM 546 CA ASP 147 20.147 -3.884 51.584 1.00 0.00 C ATOM 547 C ASP 147 20.970 -2.591 51.861 1.00 0.00 C ATOM 548 O ASP 147 21.261 -2.238 53.065 1.00 0.00 O ATOM 549 N ALA 153 21.373 -1.894 50.787 1.00 0.00 N ATOM 550 CA ALA 153 22.194 -0.652 50.925 1.00 0.00 C ATOM 551 C ALA 153 21.527 0.515 50.183 1.00 0.00 C ATOM 552 O ALA 153 21.126 0.366 49.024 1.00 0.00 O ATOM 553 N ALA 154 21.327 1.638 50.904 1.00 0.00 N ATOM 554 CA ALA 154 20.707 2.833 50.332 1.00 0.00 C ATOM 555 C ALA 154 21.609 4.074 50.452 1.00 0.00 C ATOM 556 O ALA 154 22.626 4.071 51.189 1.00 0.00 O ATOM 557 N ILE 155 21.246 5.130 49.716 1.00 0.00 N ATOM 558 CA ILE 155 21.991 6.407 49.812 1.00 0.00 C ATOM 559 C ILE 155 20.990 7.407 50.340 1.00 0.00 C ATOM 560 O ILE 155 19.864 7.403 49.903 1.00 0.00 O ATOM 561 N CYS 156 21.349 8.192 51.321 1.00 0.00 N ATOM 562 CA CYS 156 20.567 9.369 51.668 1.00 0.00 C ATOM 563 C CYS 156 21.145 10.566 50.828 1.00 0.00 C ATOM 564 O CYS 156 22.341 10.820 50.848 1.00 0.00 O ATOM 565 N ALA 157 20.291 11.230 50.052 1.00 0.00 N ATOM 566 CA ALA 157 20.725 12.338 49.143 1.00 0.00 C ATOM 567 C ALA 157 19.706 13.474 49.087 1.00 0.00 C ATOM 568 O ALA 157 18.529 13.217 49.334 1.00 0.00 O ATOM 569 N PRO 158 20.125 14.697 48.652 1.00 0.00 N ATOM 570 CA PRO 158 19.171 15.744 48.347 1.00 0.00 C ATOM 571 C PRO 158 17.983 15.267 47.513 1.00 0.00 C ATOM 572 O PRO 158 18.116 14.398 46.688 1.00 0.00 O ATOM 573 N LEU 159 16.810 15.746 47.885 1.00 0.00 N ATOM 574 CA LEU 159 15.564 15.256 47.336 1.00 0.00 C ATOM 575 C LEU 159 15.636 15.703 45.839 1.00 0.00 C ATOM 576 O LEU 159 15.783 16.910 45.524 1.00 0.00 O ATOM 577 N ILE 160 15.745 14.736 44.944 1.00 0.00 N ATOM 578 CA ILE 160 15.586 15.039 43.502 1.00 0.00 C ATOM 579 C ILE 160 16.966 14.955 42.871 1.00 0.00 C ATOM 580 O ILE 160 17.077 15.012 41.650 1.00 0.00 O ATOM 581 N ALA 161 18.016 14.789 43.677 1.00 0.00 N ATOM 582 CA ALA 161 19.333 14.534 43.130 1.00 0.00 C ATOM 583 C ALA 161 19.610 13.108 42.615 1.00 0.00 C ATOM 584 O ALA 161 20.417 12.920 41.739 1.00 0.00 O ATOM 585 N ALA 162 18.967 12.086 43.182 1.00 0.00 N ATOM 586 CA ALA 162 19.101 10.702 42.681 1.00 0.00 C ATOM 587 C ALA 162 18.444 10.579 41.330 1.00 0.00 C ATOM 588 O ALA 162 18.975 9.904 40.432 1.00 0.00 O ATOM 589 N GLU 163 17.306 11.219 41.147 1.00 0.00 N ATOM 590 CA GLU 163 16.680 11.141 39.828 1.00 0.00 C ATOM 591 C GLU 163 17.471 11.873 38.718 1.00 0.00 C ATOM 592 O GLU 163 17.215 11.601 37.571 1.00 0.00 O ATOM 593 N GLN 164 18.423 12.759 39.080 1.00 0.00 N ATOM 594 CA GLN 164 19.449 13.340 38.134 1.00 0.00 C ATOM 595 C GLN 164 20.429 12.292 37.609 1.00 0.00 C ATOM 596 O GLN 164 21.136 12.530 36.616 1.00 0.00 O ATOM 597 N PRO 165 20.462 11.118 38.268 1.00 0.00 N ATOM 598 CA PRO 165 21.320 10.031 37.826 1.00 0.00 C ATOM 599 C PRO 165 20.591 8.751 37.570 1.00 0.00 C ATOM 600 O PRO 165 21.210 7.685 37.632 1.00 0.00 O ATOM 601 N GLY 166 19.293 8.804 37.296 1.00 0.00 N ATOM 602 CA GLY 166 18.562 7.564 37.040 1.00 0.00 C ATOM 603 C GLY 166 18.178 6.639 38.212 1.00 0.00 C ATOM 604 O GLY 166 17.859 5.463 37.981 1.00 0.00 O ATOM 605 N LEU 167 18.148 7.156 39.456 1.00 0.00 N ATOM 606 CA LEU 167 17.646 6.384 40.619 1.00 0.00 C ATOM 607 C LEU 167 16.242 6.804 41.134 1.00 0.00 C ATOM 608 O LEU 167 15.767 7.905 40.858 1.00 0.00 O ATOM 609 N ASN 168 15.622 5.942 41.926 1.00 0.00 N ATOM 610 CA ASN 168 14.308 6.169 42.515 1.00 0.00 C ATOM 611 C ASN 168 14.336 6.080 44.051 1.00 0.00 C ATOM 612 O ASN 168 15.014 5.178 44.585 1.00 0.00 O ATOM 613 N VAL 169 13.553 6.941 44.761 1.00 0.00 N ATOM 614 CA VAL 169 13.438 6.805 46.224 1.00 0.00 C ATOM 615 C VAL 169 12.664 5.606 46.737 1.00 0.00 C ATOM 616 O VAL 169 11.666 5.234 46.184 1.00 0.00 O ATOM 617 N LEU 170 13.148 5.041 47.841 1.00 0.00 N ATOM 618 CA LEU 170 12.510 4.082 48.669 1.00 0.00 C ATOM 619 C LEU 170 11.613 4.930 49.567 1.00 0.00 C ATOM 620 O LEU 170 10.604 4.454 50.005 1.00 0.00 O ATOM 621 N ALA 171 11.973 6.192 49.873 1.00 0.00 N ATOM 622 CA ALA 171 11.260 6.996 50.900 1.00 0.00 C ATOM 623 C ALA 171 11.658 8.477 50.660 1.00 0.00 C ATOM 624 O ALA 171 12.747 8.698 50.162 1.00 0.00 O ATOM 625 N GLU 172 10.796 9.470 50.928 1.00 0.00 N ATOM 626 CA GLU 172 11.151 10.848 50.636 1.00 0.00 C ATOM 627 C GLU 172 10.718 11.718 51.783 1.00 0.00 C ATOM 628 O GLU 172 9.975 11.313 52.624 1.00 0.00 O ATOM 629 N ASP 173 11.173 12.959 51.763 1.00 0.00 N ATOM 630 CA ASP 173 10.929 13.918 52.806 1.00 0.00 C ATOM 631 C ASP 173 11.453 13.398 54.150 1.00 0.00 C ATOM 632 O ASP 173 10.790 13.543 55.162 1.00 0.00 O ATOM 633 N ILE 174 12.636 12.771 54.122 1.00 0.00 N ATOM 634 CA ILE 174 13.170 12.147 55.334 1.00 0.00 C ATOM 635 C ILE 174 13.966 13.135 56.198 1.00 0.00 C ATOM 636 O ILE 174 14.557 12.789 57.208 1.00 0.00 O ATOM 637 N GLY 175 13.959 14.395 55.854 1.00 0.00 N ATOM 638 CA GLY 175 14.695 15.321 56.729 1.00 0.00 C ATOM 639 C GLY 175 14.086 15.317 58.139 1.00 0.00 C ATOM 640 O GLY 175 12.871 15.328 58.272 1.00 0.00 O ATOM 641 N ASP 176 14.924 15.511 59.164 1.00 0.00 N ATOM 642 CA ASP 176 14.386 15.627 60.536 1.00 0.00 C ATOM 643 C ASP 176 13.630 16.915 60.797 1.00 0.00 C ATOM 644 O ASP 176 12.839 16.929 61.723 1.00 0.00 O ATOM 645 N ASN 177 13.889 18.009 60.067 1.00 0.00 N ATOM 646 CA ASN 177 13.114 19.215 60.324 1.00 0.00 C ATOM 647 C ASN 177 12.401 19.640 59.051 1.00 0.00 C ATOM 648 O ASN 177 12.914 19.446 57.951 1.00 0.00 O ATOM 649 N PRO 178 11.207 20.236 59.202 1.00 0.00 N ATOM 650 CA PRO 178 10.459 20.531 57.956 1.00 0.00 C ATOM 651 C PRO 178 10.709 21.859 57.353 1.00 0.00 C ATOM 652 O PRO 178 10.375 22.075 56.161 1.00 0.00 O ATOM 653 N ASP 179 11.257 22.791 58.118 1.00 0.00 N ATOM 654 CA ASP 179 11.446 24.114 57.507 1.00 0.00 C ATOM 655 C ASP 179 12.895 24.545 57.500 1.00 0.00 C ATOM 656 O ASP 179 13.242 25.625 57.984 1.00 0.00 O ATOM 657 N ALA 180 13.757 23.656 57.028 1.00 0.00 N ATOM 658 CA ALA 180 15.179 24.059 56.926 1.00 0.00 C ATOM 659 C ALA 180 15.360 24.661 55.537 1.00 0.00 C ATOM 660 O ALA 180 15.043 24.022 54.571 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 336 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 49.43 77.8 162 90.0 180 ARMSMC SECONDARY STRUCTURE . . 40.17 83.3 78 97.5 80 ARMSMC SURFACE . . . . . . . . 51.28 75.7 103 88.8 116 ARMSMC BURIED . . . . . . . . 46.02 81.4 59 92.2 64 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 66 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 60 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 1 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.19 (Number of atoms: 84) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.19 84 92.3 91 CRMSCA CRN = ALL/NP . . . . . 0.0380 CRMSCA SECONDARY STRUCTURE . . 2.71 40 100.0 40 CRMSCA SURFACE . . . . . . . . 3.59 54 91.5 59 CRMSCA BURIED . . . . . . . . 2.30 30 93.8 32 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.12 336 74.8 449 CRMSMC SECONDARY STRUCTURE . . 2.62 160 80.4 199 CRMSMC SURFACE . . . . . . . . 3.49 216 74.7 289 CRMSMC BURIED . . . . . . . . 2.30 120 75.0 160 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 293 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 241 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 128 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 188 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 105 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.12 336 51.1 657 CRMSALL SECONDARY STRUCTURE . . 2.62 160 55.6 288 CRMSALL SURFACE . . . . . . . . 3.49 216 50.9 424 CRMSALL BURIED . . . . . . . . 2.30 120 51.5 233 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.414 1.000 0.500 84 92.3 91 ERRCA SECONDARY STRUCTURE . . 2.250 1.000 0.500 40 100.0 40 ERRCA SURFACE . . . . . . . . 2.745 1.000 0.500 54 91.5 59 ERRCA BURIED . . . . . . . . 1.818 1.000 0.500 30 93.8 32 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.373 1.000 0.500 336 74.8 449 ERRMC SECONDARY STRUCTURE . . 2.187 1.000 0.500 160 80.4 199 ERRMC SURFACE . . . . . . . . 2.664 1.000 0.500 216 74.7 289 ERRMC BURIED . . . . . . . . 1.849 1.000 0.500 120 75.0 160 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 293 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 241 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 128 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 188 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 105 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.373 1.000 0.500 336 51.1 657 ERRALL SECONDARY STRUCTURE . . 2.187 1.000 0.500 160 55.6 288 ERRALL SURFACE . . . . . . . . 2.664 1.000 0.500 216 50.9 424 ERRALL BURIED . . . . . . . . 1.849 1.000 0.500 120 51.5 233 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 51 63 74 82 84 91 DISTCA CA (P) 18.68 56.04 69.23 81.32 90.11 91 DISTCA CA (RMS) 0.70 1.28 1.60 2.10 2.71 DISTCA ALL (N) 69 202 251 305 331 336 657 DISTALL ALL (P) 10.50 30.75 38.20 46.42 50.38 657 DISTALL ALL (RMS) 0.74 1.27 1.59 2.18 2.79 DISTALL END of the results output