####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # ERROR! Check molecule: 1 and the amino acid number 142 and name MET # This number or some atom positions within this amino acid are duplicated. # WARNING! There is CA atom duplicated inside the residue 142 (molecule: 1) # Only one atom (first) is used for calculations. # WARNING! There is CA atom duplicated inside the residue 142 (molecule: 1) # Only one atom (first) is used for calculations. # Molecule1: number of CA atoms 89 ( 357), selected 89 , name T0533AL285_1-D2 # Molecule2: number of CA atoms 91 ( 657), selected 89 , name T0533-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0533AL285_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 89 90 - 180 2.30 2.30 LCS_AVERAGE: 97.80 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 62 90 - 153 1.97 2.36 LCS_AVERAGE: 52.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 90 - 121 0.92 2.32 LONGEST_CONTINUOUS_SEGMENT: 32 91 - 122 0.98 2.33 LCS_AVERAGE: 22.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 89 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 90 I 90 32 62 89 7 34 57 63 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT T 91 T 91 32 62 89 16 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT F 92 F 92 32 62 89 16 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT V 93 V 93 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 94 L 94 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT V 95 V 95 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 96 A 96 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT R 97 R 97 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT P 98 P 98 32 62 89 26 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT G 99 G 99 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT V 100 V 100 32 62 89 10 29 55 63 69 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT E 101 E 101 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 102 L 102 32 62 89 4 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT S 103 S 103 32 62 89 22 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 104 D 104 32 62 89 7 46 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT I 105 I 105 32 62 89 19 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT K 106 K 106 32 62 89 24 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT R 107 R 107 32 62 89 18 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT I 108 I 108 32 62 89 18 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT S 109 S 109 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT T 110 T 110 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT H 111 H 111 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT G 112 G 112 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT H 113 H 113 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 114 A 114 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT W 115 W 115 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 116 A 116 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT Q 117 Q 117 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT C 118 C 118 32 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT R 119 R 119 32 62 89 11 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 120 L 120 32 62 89 15 47 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT W 121 W 121 32 62 89 5 15 49 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT V 122 V 122 32 62 89 5 10 44 63 68 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 123 D 123 24 62 89 5 25 56 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT E 124 E 124 24 62 89 12 42 56 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT H 125 H 125 18 62 89 5 8 22 43 65 70 78 84 86 87 87 89 89 89 89 89 89 89 89 89 LCS_GDT P 127 P 127 20 62 89 12 37 56 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT N 128 N 128 20 62 89 3 25 55 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 129 A 129 20 62 89 4 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 130 D 130 20 62 89 18 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT Y 131 Y 131 20 62 89 14 44 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT V 132 V 132 20 62 89 11 41 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT P 133 P 133 20 62 89 22 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT G 134 G 134 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT S 135 S 135 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT S 136 S 136 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT T 137 T 137 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 138 A 138 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 139 A 139 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT S 140 S 140 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 141 A 141 20 62 89 23 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT M 142 M 142 20 62 89 25 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT G 143 G 143 20 62 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 144 L 144 20 62 89 9 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 145 L 145 20 62 89 4 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT E 146 E 146 20 62 89 24 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 147 D 147 19 62 89 1 3 3 16 61 72 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 148 D 148 3 62 89 0 3 17 39 65 69 76 84 85 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT P 150 P 150 3 62 89 0 3 3 10 16 27 51 57 70 84 88 89 89 89 89 89 89 89 89 89 LCS_GDT Y 151 Y 151 6 62 89 3 6 6 7 10 17 30 50 63 82 88 89 89 89 89 89 89 89 89 89 LCS_GDT E 152 E 152 6 62 89 4 6 15 34 66 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 153 A 153 6 62 89 3 6 6 14 33 73 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 154 A 154 6 8 89 4 6 14 28 51 73 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT I 155 I 155 6 8 89 4 6 6 11 28 66 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT C 156 C 156 6 8 89 4 6 15 28 58 73 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 157 A 157 4 9 89 0 5 14 28 50 73 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT P 158 P 158 8 9 89 4 9 21 40 66 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 159 L 159 8 9 89 5 7 7 8 61 70 78 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT I 160 I 160 8 9 89 5 7 51 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 161 A 161 8 9 89 5 7 8 35 65 70 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 162 A 162 8 9 89 5 7 7 8 32 54 68 83 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT E 163 E 163 8 16 89 5 7 37 58 69 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT Q 164 Q 164 8 17 89 5 34 56 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT P 165 P 165 8 17 89 3 3 7 12 24 63 72 80 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT G 166 G 166 10 17 89 9 29 56 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 167 L 167 10 17 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT N 168 N 168 10 17 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT V 169 V 169 10 17 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT L 170 L 170 10 17 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 171 A 171 10 17 89 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT E 172 E 172 10 17 89 25 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 173 D 173 10 17 89 25 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT I 174 I 174 10 17 89 6 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT G 175 G 175 10 17 89 21 47 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 176 D 176 10 17 89 3 11 51 62 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT N 177 N 177 7 17 89 3 14 54 63 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT P 178 P 178 7 17 89 4 14 45 63 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT D 179 D 179 7 17 89 4 14 52 62 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_GDT A 180 A 180 7 17 89 4 34 57 63 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 LCS_AVERAGE LCS_A: 57.36 ( 22.09 52.19 97.80 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 27 48 57 64 70 74 79 84 86 87 88 89 89 89 89 89 89 89 89 89 GDT PERCENT_AT 29.67 52.75 62.64 70.33 76.92 81.32 86.81 92.31 94.51 95.60 96.70 97.80 97.80 97.80 97.80 97.80 97.80 97.80 97.80 97.80 GDT RMS_LOCAL 0.32 0.58 0.73 0.97 1.17 1.33 1.60 1.81 1.96 2.02 2.27 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 GDT RMS_ALL_AT 2.33 2.34 2.34 2.35 2.34 2.33 2.31 2.32 2.33 2.32 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 2.30 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 90 I 90 1.733 4 0.145 0.145 1.954 75.000 37.500 LGA T 91 T 91 0.732 3 0.091 0.091 1.145 85.952 49.116 LGA F 92 F 92 0.672 7 0.055 0.055 0.725 90.476 32.900 LGA V 93 V 93 0.466 3 0.035 0.035 0.558 97.619 55.782 LGA L 94 L 94 0.209 4 0.070 0.070 0.456 100.000 50.000 LGA V 95 V 95 0.286 3 0.106 0.106 0.522 97.619 55.782 LGA A 96 A 96 0.625 1 0.033 0.033 0.625 95.238 76.190 LGA R 97 R 97 0.293 7 0.033 0.033 0.829 95.238 34.632 LGA P 98 P 98 0.756 3 0.083 0.083 0.756 92.857 53.061 LGA G 99 G 99 0.872 0 0.560 0.560 2.838 77.738 77.738 LGA V 100 V 100 2.985 3 0.079 0.079 2.985 64.881 37.075 LGA E 101 E 101 0.705 5 0.149 0.149 1.576 83.810 37.249 LGA L 102 L 102 1.052 4 0.083 0.083 1.052 88.214 44.107 LGA S 103 S 103 1.252 2 0.201 0.201 1.735 79.286 52.857 LGA D 104 D 104 1.057 4 0.130 0.130 1.636 83.810 41.905 LGA I 105 I 105 0.734 4 0.115 0.115 0.973 90.476 45.238 LGA K 106 K 106 0.861 5 0.068 0.068 0.861 90.476 40.212 LGA R 107 R 107 1.418 7 0.103 0.103 1.541 79.286 28.831 LGA I 108 I 108 1.289 4 0.052 0.052 1.511 79.286 39.643 LGA S 109 S 109 0.636 2 0.064 0.064 0.780 90.476 60.317 LGA T 110 T 110 0.333 3 0.037 0.037 0.391 100.000 57.143 LGA H 111 H 111 0.484 6 0.032 0.032 0.484 100.000 40.000 LGA G 112 G 112 0.127 0 0.031 0.031 0.407 100.000 100.000 LGA H 113 H 113 0.650 6 0.031 0.031 0.650 95.238 38.095 LGA A 114 A 114 0.264 1 0.113 0.113 0.667 97.619 78.095 LGA W 115 W 115 0.071 10 0.049 0.049 0.279 100.000 28.571 LGA A 116 A 116 0.311 1 0.137 0.137 0.999 97.619 78.095 LGA Q 117 Q 117 0.305 5 0.108 0.108 0.305 100.000 44.444 LGA C 118 C 118 0.155 2 0.083 0.083 0.798 97.619 65.079 LGA R 119 R 119 0.786 7 0.101 0.101 1.327 90.595 32.944 LGA L 120 L 120 0.816 4 0.043 0.043 1.737 83.810 41.905 LGA W 121 W 121 2.192 10 0.092 0.092 2.516 64.881 18.537 LGA V 122 V 122 2.605 3 0.097 0.097 3.242 57.262 32.721 LGA D 123 D 123 1.846 4 0.058 0.058 1.920 72.857 36.429 LGA E 124 E 124 1.762 5 0.115 0.115 2.371 68.810 30.582 LGA H 125 H 125 3.871 6 0.482 0.482 5.481 39.167 15.667 LGA P 127 P 127 1.937 3 0.121 0.121 2.650 71.071 40.612 LGA N 128 N 128 2.066 4 0.076 0.076 2.672 67.024 33.512 LGA A 129 A 129 1.308 1 0.098 0.098 1.714 79.286 63.429 LGA D 130 D 130 1.316 4 0.041 0.041 1.316 83.690 41.845 LGA Y 131 Y 131 1.596 8 0.017 0.017 1.632 72.857 24.286 LGA V 132 V 132 1.629 3 0.050 0.050 1.629 77.143 44.082 LGA P 133 P 133 0.907 3 0.040 0.040 1.297 88.214 50.408 LGA G 134 G 134 0.414 0 0.030 0.030 0.713 92.857 92.857 LGA S 135 S 135 0.514 2 0.052 0.052 0.713 90.476 60.317 LGA S 136 S 136 0.473 2 0.073 0.073 0.473 100.000 66.667 LGA T 137 T 137 0.242 3 0.076 0.076 0.617 97.619 55.782 LGA A 138 A 138 0.407 1 0.021 0.021 0.572 97.619 78.095 LGA A 139 A 139 0.462 1 0.092 0.092 0.462 100.000 80.000 LGA S 140 S 140 0.621 2 0.037 0.037 0.621 92.857 61.905 LGA A 141 A 141 0.624 1 0.110 0.110 0.624 95.238 76.190 LGA M 142 M 142 0.521 4 0.072 0.072 0.521 97.619 48.810 LGA G 143 G 143 0.432 0 0.129 0.129 0.476 100.000 100.000 LGA L 144 L 144 0.840 4 0.181 0.181 0.911 90.476 45.238 LGA L 145 L 145 1.215 4 0.152 0.152 1.392 81.429 40.714 LGA E 146 E 146 1.178 5 0.628 0.628 1.830 79.286 35.238 LGA D 147 D 147 3.554 4 0.616 0.616 3.554 50.119 25.060 LGA D 148 D 148 4.949 4 0.020 0.020 6.748 30.238 15.119 LGA P 150 P 150 7.572 3 0.437 0.437 7.889 7.857 4.490 LGA Y 151 Y 151 7.994 8 0.721 0.721 7.994 13.214 4.405 LGA E 152 E 152 3.147 5 0.142 0.142 4.676 47.143 20.952 LGA A 153 A 153 3.747 1 0.141 0.141 4.048 45.119 36.095 LGA A 154 A 154 3.641 1 0.020 0.020 4.611 42.024 33.619 LGA I 155 I 155 3.882 4 0.131 0.131 4.662 42.024 21.012 LGA C 156 C 156 3.611 2 0.260 0.260 4.381 45.119 30.079 LGA A 157 A 157 3.700 1 0.122 0.122 3.700 50.238 40.190 LGA P 158 P 158 3.286 3 0.654 0.654 3.632 50.119 28.639 LGA L 159 L 159 3.919 4 0.052 0.052 3.919 53.690 26.845 LGA I 160 I 160 2.639 4 0.048 0.048 2.639 64.881 32.440 LGA A 161 A 161 3.929 1 0.051 0.051 4.558 45.714 36.571 LGA A 162 A 162 4.991 1 0.206 0.206 5.321 34.524 27.619 LGA E 163 E 163 2.698 5 0.192 0.192 2.742 62.976 27.989 LGA Q 164 Q 164 2.165 5 0.583 0.583 4.484 60.595 26.931 LGA P 165 P 165 5.678 3 0.274 0.274 5.678 30.476 17.415 LGA G 166 G 166 2.502 0 0.116 0.116 2.666 61.071 61.071 LGA L 167 L 167 0.374 4 0.162 0.162 0.827 97.619 48.810 LGA N 168 N 168 0.628 4 0.048 0.048 0.628 92.857 46.429 LGA V 169 V 169 0.589 3 0.067 0.067 0.625 95.238 54.422 LGA L 170 L 170 0.610 4 0.028 0.028 0.661 90.476 45.238 LGA A 171 A 171 0.679 1 0.083 0.083 0.756 90.476 72.381 LGA E 172 E 172 0.861 5 0.092 0.092 0.861 90.476 40.212 LGA D 173 D 173 0.838 4 0.018 0.018 0.914 90.476 45.238 LGA I 174 I 174 0.847 4 0.234 0.234 0.847 90.476 45.238 LGA G 175 G 175 0.836 0 0.079 0.079 1.296 88.214 88.214 LGA D 176 D 176 2.712 4 0.393 0.393 2.712 66.905 33.452 LGA N 177 N 177 2.058 4 0.088 0.088 2.400 64.762 32.381 LGA P 178 P 178 2.528 3 0.665 0.665 2.528 69.048 39.456 LGA D 179 D 179 2.636 4 0.134 0.134 3.363 65.357 32.679 LGA A 180 A 180 2.024 1 0.114 0.114 2.317 64.762 51.810 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 89 356 356 100.00 644 356 55.28 91 SUMMARY(RMSD_GDC): 2.300 2.222 2.222 75.300 44.186 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 89 91 4.0 84 1.81 78.297 74.692 4.395 LGA_LOCAL RMSD: 1.811 Number of atoms: 84 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.318 Number of assigned atoms: 89 Std_ASGN_ATOMS RMSD: 2.300 Standard rmsd on all 89 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.390770 * X + 0.203574 * Y + -0.897695 * Z + 32.396400 Y_new = 0.048037 * X + -0.978419 * Y + -0.200969 * Z + 61.811859 Z_new = -0.919234 * X + 0.035410 * Y + -0.392115 * Z + 66.410378 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.122317 1.166131 3.051533 [DEG: 7.0082 66.8144 174.8400 ] ZXZ: -1.350555 1.973726 -1.532295 [DEG: -77.3811 113.0862 -87.7940 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0533AL285_1-D2 REMARK 2: T0533-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0533AL285_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 89 91 4.0 84 1.81 74.692 2.30 REMARK ---------------------------------------------------------- MOLECULE T0533AL285_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2qmxA ATOM 313 N ILE 90 16.828 21.806 49.551 1.00 0.00 N ATOM 314 CA ILE 90 17.576 20.593 49.783 1.00 0.00 C ATOM 315 C ILE 90 16.688 19.584 50.480 1.00 0.00 C ATOM 316 O ILE 90 16.531 19.598 51.717 1.00 0.00 O ATOM 317 N THR 91 16.068 18.709 49.700 1.00 0.00 N ATOM 318 CA THR 91 15.245 17.675 50.316 1.00 0.00 C ATOM 319 C THR 91 15.814 16.259 50.116 1.00 0.00 C ATOM 320 O THR 91 15.938 15.797 49.012 1.00 0.00 O ATOM 321 N PHE 92 16.164 15.570 51.186 1.00 0.00 N ATOM 322 CA PHE 92 16.807 14.311 51.027 1.00 0.00 C ATOM 323 C PHE 92 15.832 13.270 50.680 1.00 0.00 C ATOM 324 O PHE 92 14.694 13.306 51.154 1.00 0.00 O ATOM 325 N VAL 93 16.267 12.367 49.800 1.00 0.00 N ATOM 326 CA VAL 93 15.562 11.118 49.583 1.00 0.00 C ATOM 327 C VAL 93 16.430 9.990 50.030 1.00 0.00 C ATOM 328 O VAL 93 17.648 9.984 49.823 1.00 0.00 O ATOM 329 N LEU 94 15.774 9.019 50.654 1.00 0.00 N ATOM 330 CA LEU 94 16.390 7.755 50.959 1.00 0.00 C ATOM 331 C LEU 94 16.070 6.889 49.765 1.00 0.00 C ATOM 332 O LEU 94 14.961 6.894 49.250 1.00 0.00 O ATOM 333 N VAL 95 17.047 6.132 49.326 1.00 0.00 N ATOM 334 CA VAL 95 17.105 5.801 47.944 1.00 0.00 C ATOM 335 C VAL 95 17.745 4.427 47.841 1.00 0.00 C ATOM 336 O VAL 95 18.881 4.231 48.310 1.00 0.00 O ATOM 337 N ALA 96 17.008 3.490 47.239 1.00 0.00 N ATOM 338 CA ALA 96 17.426 2.095 47.128 1.00 0.00 C ATOM 339 C ALA 96 17.393 1.596 45.697 1.00 0.00 C ATOM 340 O ALA 96 16.969 2.325 44.790 1.00 0.00 O ATOM 341 N ARG 97 17.846 0.353 45.488 1.00 0.00 N ATOM 342 CA ARG 97 17.804 -0.270 44.166 1.00 0.00 C ATOM 343 C ARG 97 16.369 -0.737 43.893 1.00 0.00 C ATOM 344 O ARG 97 15.581 -0.869 44.830 1.00 0.00 O ATOM 345 N PRO 98 16.011 -0.990 42.612 1.00 0.00 N ATOM 346 CA PRO 98 14.649 -1.489 42.342 1.00 0.00 C ATOM 347 C PRO 98 14.496 -2.811 43.057 1.00 0.00 C ATOM 348 O PRO 98 15.465 -3.564 43.139 1.00 0.00 O ATOM 349 N GLY 99 13.300 -3.091 43.562 1.00 0.00 N ATOM 350 CA GLY 99 13.125 -4.147 44.575 1.00 0.00 C ATOM 351 C GLY 99 13.659 -3.443 45.806 1.00 0.00 C ATOM 352 O GLY 99 14.858 -3.509 46.121 1.00 0.00 O ATOM 353 N VAL 100 12.779 -2.703 46.463 1.00 0.00 N ATOM 354 CA VAL 100 13.229 -1.623 47.305 1.00 0.00 C ATOM 355 C VAL 100 12.637 -1.745 48.680 1.00 0.00 C ATOM 356 O VAL 100 11.430 -1.570 48.853 1.00 0.00 O ATOM 357 N GLU 101 13.488 -2.051 49.656 1.00 0.00 N ATOM 358 CA GLU 101 13.026 -2.169 51.041 1.00 0.00 C ATOM 359 C GLU 101 13.996 -1.561 52.068 1.00 0.00 C ATOM 360 O GLU 101 15.271 -1.698 51.972 1.00 0.00 O ATOM 361 N LEU 102 13.269 -0.911 53.088 1.00 0.00 N ATOM 362 CA LEU 102 13.958 -0.333 54.230 1.00 0.00 C ATOM 363 C LEU 102 14.286 -1.407 55.299 1.00 0.00 C ATOM 364 O LEU 102 15.302 -1.315 56.002 1.00 0.00 O ATOM 365 N SER 103 13.451 -2.455 55.387 1.00 0.00 N ATOM 366 CA SER 103 13.626 -3.445 56.443 1.00 0.00 C ATOM 367 C SER 103 14.515 -4.609 56.015 1.00 0.00 C ATOM 368 O SER 103 14.505 -5.648 56.645 1.00 0.00 O ATOM 369 N ASP 104 15.289 -4.441 54.947 1.00 0.00 N ATOM 370 CA ASP 104 16.257 -5.461 54.531 1.00 0.00 C ATOM 371 C ASP 104 17.671 -4.879 54.505 1.00 0.00 C ATOM 372 O ASP 104 18.659 -5.638 54.641 1.00 0.00 O ATOM 373 N ILE 105 17.717 -3.536 54.343 1.00 0.00 N ATOM 374 CA ILE 105 18.899 -2.694 54.307 1.00 0.00 C ATOM 375 C ILE 105 19.804 -2.822 55.510 1.00 0.00 C ATOM 376 O ILE 105 19.283 -2.951 56.631 1.00 0.00 O ATOM 377 N LYS 106 21.118 -2.553 55.262 1.00 0.00 N ATOM 378 CA LYS 106 22.121 -2.579 56.318 1.00 0.00 C ATOM 379 C LYS 106 22.784 -1.243 56.510 1.00 0.00 C ATOM 380 O LYS 106 23.469 -1.018 57.515 1.00 0.00 O ATOM 381 N ARG 107 22.592 -0.353 55.543 1.00 0.00 N ATOM 382 CA ARG 107 23.263 0.943 55.585 1.00 0.00 C ATOM 383 C ARG 107 22.578 1.942 54.679 1.00 0.00 C ATOM 384 O ARG 107 21.892 1.568 53.713 1.00 0.00 O ATOM 385 N ILE 108 22.744 3.214 55.032 1.00 0.00 N ATOM 386 CA ILE 108 22.552 4.298 54.114 1.00 0.00 C ATOM 387 C ILE 108 23.883 5.091 54.113 1.00 0.00 C ATOM 388 O ILE 108 24.464 5.407 55.182 1.00 0.00 O ATOM 389 N SER 109 24.385 5.347 52.902 1.00 0.00 N ATOM 390 CA SER 109 25.559 6.178 52.714 1.00 0.00 C ATOM 391 C SER 109 25.143 7.601 52.396 1.00 0.00 C ATOM 392 O SER 109 24.056 7.859 51.825 1.00 0.00 O ATOM 393 N THR 110 26.007 8.537 52.774 1.00 0.00 N ATOM 394 CA THR 110 25.790 9.891 52.354 1.00 0.00 C ATOM 395 C THR 110 26.860 10.792 52.889 1.00 0.00 C ATOM 396 O THR 110 27.801 10.332 53.551 1.00 0.00 O ATOM 397 N HIS 111 26.700 12.080 52.634 1.00 0.00 N ATOM 398 CA HIS 111 27.628 13.082 53.162 1.00 0.00 C ATOM 399 C HIS 111 27.399 13.197 54.665 1.00 0.00 C ATOM 400 O HIS 111 26.248 13.281 55.087 1.00 0.00 O ATOM 401 N GLY 112 28.493 13.241 55.463 1.00 0.00 N ATOM 402 CA GLY 112 28.336 13.312 56.899 1.00 0.00 C ATOM 403 C GLY 112 27.279 14.334 57.407 1.00 0.00 C ATOM 404 O GLY 112 26.562 14.029 58.374 1.00 0.00 O ATOM 405 N HIS 113 27.175 15.499 56.757 1.00 0.00 N ATOM 406 CA HIS 113 26.178 16.493 57.104 1.00 0.00 C ATOM 407 C HIS 113 24.746 16.095 56.755 1.00 0.00 C ATOM 408 O HIS 113 23.864 16.399 57.552 1.00 0.00 O ATOM 409 N ALA 114 24.505 15.416 55.613 1.00 0.00 N ATOM 410 CA ALA 114 23.194 14.768 55.327 1.00 0.00 C ATOM 411 C ALA 114 22.830 13.696 56.348 1.00 0.00 C ATOM 412 O ALA 114 21.637 13.428 56.624 1.00 0.00 O ATOM 413 N TRP 115 23.864 13.057 56.882 1.00 0.00 N ATOM 414 CA TRP 115 23.667 11.918 57.775 1.00 0.00 C ATOM 415 C TRP 115 23.239 12.502 59.107 1.00 0.00 C ATOM 416 O TRP 115 22.291 12.062 59.733 1.00 0.00 O ATOM 417 N ALA 116 23.928 13.530 59.531 1.00 0.00 N ATOM 418 CA ALA 116 23.556 14.216 60.737 1.00 0.00 C ATOM 419 C ALA 116 22.134 14.812 60.627 1.00 0.00 C ATOM 420 O ALA 116 21.328 14.667 61.527 1.00 0.00 O ATOM 421 N GLN 117 21.833 15.471 59.527 1.00 0.00 N ATOM 422 CA GLN 117 20.512 16.060 59.285 1.00 0.00 C ATOM 423 C GLN 117 19.366 15.040 59.216 1.00 0.00 C ATOM 424 O GLN 117 18.184 15.395 59.361 1.00 0.00 O ATOM 425 N CYS 118 19.714 13.774 58.992 1.00 0.00 N ATOM 426 CA CYS 118 18.745 12.703 58.987 1.00 0.00 C ATOM 427 C CYS 118 18.894 11.873 60.263 1.00 0.00 C ATOM 428 O CYS 118 18.577 10.695 60.277 1.00 0.00 O ATOM 429 N ARG 119 19.396 12.486 61.331 1.00 0.00 N ATOM 430 CA ARG 119 19.676 11.796 62.615 1.00 0.00 C ATOM 431 C ARG 119 18.461 11.083 63.265 1.00 0.00 C ATOM 432 O ARG 119 18.629 10.116 64.017 1.00 0.00 O ATOM 433 N LEU 120 17.248 11.557 62.979 1.00 0.00 N ATOM 434 CA LEU 120 16.015 10.893 63.431 1.00 0.00 C ATOM 435 C LEU 120 15.935 9.512 62.826 1.00 0.00 C ATOM 436 O LEU 120 15.921 8.513 63.538 1.00 0.00 O ATOM 437 N TRP 121 15.890 9.482 61.494 1.00 0.00 N ATOM 438 CA TRP 121 15.810 8.256 60.704 1.00 0.00 C ATOM 439 C TRP 121 16.761 7.189 61.221 1.00 0.00 C ATOM 440 O TRP 121 16.467 6.012 61.112 1.00 0.00 O ATOM 441 N VAL 122 17.887 7.611 61.797 1.00 0.00 N ATOM 442 CA VAL 122 18.940 6.686 62.198 1.00 0.00 C ATOM 443 C VAL 122 18.806 6.162 63.605 1.00 0.00 C ATOM 444 O VAL 122 19.181 5.021 63.875 1.00 0.00 O ATOM 445 N ASP 123 18.265 6.987 64.494 1.00 0.00 N ATOM 446 CA ASP 123 18.052 6.578 65.881 1.00 0.00 C ATOM 447 C ASP 123 16.876 5.628 65.922 1.00 0.00 C ATOM 448 O ASP 123 16.913 4.635 66.635 1.00 0.00 O ATOM 449 N GLU 124 15.857 5.912 65.116 1.00 0.00 N ATOM 450 CA GLU 124 14.723 4.996 64.933 1.00 0.00 C ATOM 451 C GLU 124 15.052 3.728 64.095 1.00 0.00 C ATOM 452 O GLU 124 14.445 2.661 64.310 1.00 0.00 O ATOM 453 N HIS 125 15.984 3.836 63.133 1.00 0.00 N ATOM 454 CA HIS 125 16.369 2.674 62.297 1.00 0.00 C ATOM 455 C HIS 125 17.803 2.163 62.580 1.00 0.00 C ATOM 456 O HIS 125 18.719 2.396 61.772 1.00 0.00 O ATOM 457 N PRO 127 18.002 1.437 63.711 1.00 0.00 N ATOM 458 CA PRO 127 19.369 1.020 64.041 1.00 0.00 C ATOM 459 C PRO 127 19.831 -0.267 63.331 1.00 0.00 C ATOM 460 O PRO 127 20.963 -0.705 63.540 1.00 0.00 O ATOM 461 N ASN 128 18.984 -0.870 62.494 1.00 0.00 N ATOM 462 CA ASN 128 19.452 -1.934 61.598 1.00 0.00 C ATOM 463 C ASN 128 20.195 -1.308 60.423 1.00 0.00 C ATOM 464 O ASN 128 20.856 -2.000 59.652 1.00 0.00 O ATOM 465 N ALA 129 20.060 0.016 60.304 1.00 0.00 N ATOM 466 CA ALA 129 20.646 0.803 59.230 1.00 0.00 C ATOM 467 C ALA 129 21.682 1.766 59.804 1.00 0.00 C ATOM 468 O ALA 129 21.359 2.640 60.624 1.00 0.00 O ATOM 469 N ASP 130 22.937 1.575 59.401 1.00 0.00 N ATOM 470 CA ASP 130 24.008 2.391 59.949 1.00 0.00 C ATOM 471 C ASP 130 24.488 3.461 58.983 1.00 0.00 C ATOM 472 O ASP 130 24.724 3.222 57.796 1.00 0.00 O ATOM 473 N TYR 131 24.617 4.655 59.519 1.00 0.00 N ATOM 474 CA TYR 131 25.127 5.780 58.797 1.00 0.00 C ATOM 475 C TYR 131 26.503 5.458 58.216 1.00 0.00 C ATOM 476 O TYR 131 27.393 5.047 58.955 1.00 0.00 O ATOM 477 N VAL 132 26.685 5.623 56.896 1.00 0.00 N ATOM 478 CA VAL 132 28.033 5.538 56.341 1.00 0.00 C ATOM 479 C VAL 132 28.466 6.769 55.595 1.00 0.00 C ATOM 480 O VAL 132 27.812 7.182 54.646 1.00 0.00 O ATOM 481 N PRO 133 29.592 7.326 56.044 1.00 0.00 N ATOM 482 CA PRO 133 30.263 8.474 55.421 1.00 0.00 C ATOM 483 C PRO 133 30.589 8.228 53.925 1.00 0.00 C ATOM 484 O PRO 133 31.167 7.213 53.543 1.00 0.00 O ATOM 485 N GLY 134 30.150 9.157 53.098 1.00 0.00 N ATOM 486 CA GLY 134 30.463 9.190 51.674 1.00 0.00 C ATOM 487 C GLY 134 30.996 10.594 51.340 1.00 0.00 C ATOM 488 O GLY 134 30.699 11.567 52.023 1.00 0.00 O ATOM 489 N SER 135 31.811 10.675 50.303 1.00 0.00 N ATOM 490 CA SER 135 32.294 11.937 49.819 1.00 0.00 C ATOM 491 C SER 135 31.195 12.956 49.574 1.00 0.00 C ATOM 492 O SER 135 31.333 14.114 49.898 1.00 0.00 O ATOM 493 N SER 136 30.113 12.553 48.939 1.00 0.00 N ATOM 494 CA SER 136 29.024 13.482 48.753 1.00 0.00 C ATOM 495 C SER 136 27.792 12.677 48.593 1.00 0.00 C ATOM 496 O SER 136 27.872 11.461 48.629 1.00 0.00 O ATOM 497 N THR 137 26.663 13.347 48.410 1.00 0.00 N ATOM 498 CA THR 137 25.376 12.644 48.313 1.00 0.00 C ATOM 499 C THR 137 25.115 12.033 46.979 1.00 0.00 C ATOM 500 O THR 137 24.449 11.007 46.925 1.00 0.00 O ATOM 501 N ALA 138 25.611 12.666 45.907 1.00 0.00 N ATOM 502 CA ALA 138 25.378 12.173 44.539 1.00 0.00 C ATOM 503 C ALA 138 26.127 10.893 44.277 1.00 0.00 C ATOM 504 O ALA 138 25.551 9.959 43.723 1.00 0.00 O ATOM 505 N ALA 139 27.394 10.839 44.686 1.00 0.00 N ATOM 506 CA ALA 139 28.177 9.610 44.648 1.00 0.00 C ATOM 507 C ALA 139 27.652 8.448 45.465 1.00 0.00 C ATOM 508 O ALA 139 27.926 7.288 45.174 1.00 0.00 O ATOM 509 N SER 140 26.929 8.769 46.523 1.00 0.00 N ATOM 510 CA SER 140 26.270 7.783 47.356 1.00 0.00 C ATOM 511 C SER 140 25.267 7.045 46.505 1.00 0.00 C ATOM 512 O SER 140 25.262 5.841 46.478 1.00 0.00 O ATOM 513 N ALA 141 24.442 7.809 45.767 1.00 0.00 N ATOM 514 CA ALA 141 23.546 7.266 44.738 1.00 0.00 C ATOM 515 C ALA 141 24.363 6.370 43.822 1.00 0.00 C ATOM 516 O ALA 141 24.158 5.180 43.818 1.00 0.00 O ATOM 517 N MET 142 25.321 6.972 43.108 1.00 0.00 N ATOM 518 CA MET 142 26.269 6.270 42.229 1.00 0.00 C ATOM 519 CA MET 142 26.244 6.250 42.216 1.00 0.00 C ATOM 520 C MET 142 26.756 4.912 42.771 1.00 0.00 C ATOM 521 O MET 142 26.828 3.908 42.023 1.00 0.00 O ATOM 522 N GLY 143 27.091 4.851 44.065 1.00 0.00 N ATOM 523 CA GLY 143 27.640 3.597 44.622 1.00 0.00 C ATOM 524 C GLY 143 26.649 2.461 44.688 1.00 0.00 C ATOM 525 O GLY 143 26.885 1.386 44.138 1.00 0.00 O ATOM 526 N LEU 144 25.527 2.715 45.341 1.00 0.00 N ATOM 527 CA LEU 144 24.343 1.864 45.227 1.00 0.00 C ATOM 528 C LEU 144 24.104 1.275 43.806 1.00 0.00 C ATOM 529 O LEU 144 23.962 0.049 43.657 1.00 0.00 O ATOM 530 N LEU 145 24.076 2.120 42.773 1.00 0.00 N ATOM 531 CA LEU 145 23.774 1.665 41.406 1.00 0.00 C ATOM 532 C LEU 145 24.823 0.707 40.814 1.00 0.00 C ATOM 533 O LEU 145 24.488 -0.169 40.009 1.00 0.00 O ATOM 534 N GLU 146 26.080 0.880 41.223 1.00 0.00 N ATOM 535 CA GLU 146 27.193 0.033 40.780 1.00 0.00 C ATOM 536 C GLU 146 27.412 -1.184 41.663 1.00 0.00 C ATOM 537 O GLU 146 27.749 -2.241 41.160 1.00 0.00 O ATOM 538 N ASP 147 27.244 -1.021 42.976 1.00 0.00 N ATOM 539 CA ASP 147 27.438 -2.116 43.934 1.00 0.00 C ATOM 540 C ASP 147 26.455 -3.263 43.744 1.00 0.00 C ATOM 541 O ASP 147 26.541 -4.240 44.485 1.00 0.00 O ATOM 542 N ASP 148 25.529 -3.126 42.782 1.00 0.00 N ATOM 543 CA ASP 148 24.471 -4.130 42.480 1.00 0.00 C ATOM 544 C ASP 148 24.041 -4.900 43.758 1.00 0.00 C ATOM 545 O ASP 148 23.960 -6.138 43.765 1.00 0.00 O ATOM 546 N PRO 150 23.778 -4.149 44.833 1.00 0.00 N ATOM 547 CA PRO 150 23.513 -4.714 46.178 1.00 0.00 C ATOM 548 C PRO 150 22.332 -4.009 46.850 1.00 0.00 C ATOM 549 O PRO 150 22.496 -2.905 47.384 1.00 0.00 O ATOM 550 N TYR 151 21.146 -4.625 46.823 1.00 0.00 N ATOM 551 CA TYR 151 19.934 -3.969 47.366 1.00 0.00 C ATOM 552 C TYR 151 19.961 -3.746 48.892 1.00 0.00 C ATOM 553 O TYR 151 19.019 -3.167 49.465 1.00 0.00 O ATOM 554 N GLU 152 21.014 -4.222 49.554 1.00 0.00 N ATOM 555 CA GLU 152 21.193 -3.961 50.991 1.00 0.00 C ATOM 556 C GLU 152 21.572 -2.492 51.321 1.00 0.00 C ATOM 557 O GLU 152 21.052 -1.922 52.280 1.00 0.00 O ATOM 558 N ALA 153 22.477 -1.902 50.521 1.00 0.00 N ATOM 559 CA ALA 153 23.022 -0.550 50.741 1.00 0.00 C ATOM 560 C ALA 153 22.097 0.529 50.193 1.00 0.00 C ATOM 561 O ALA 153 21.725 0.488 49.002 1.00 0.00 O ATOM 562 N ALA 154 21.737 1.495 51.057 1.00 0.00 N ATOM 563 CA ALA 154 20.954 2.653 50.643 1.00 0.00 C ATOM 564 C ALA 154 21.848 3.897 50.483 1.00 0.00 C ATOM 565 O ALA 154 22.972 3.922 50.995 1.00 0.00 O ATOM 566 N ILE 155 21.366 4.908 49.749 1.00 0.00 N ATOM 567 CA ILE 155 21.990 6.230 49.699 1.00 0.00 C ATOM 568 C ILE 155 20.986 7.279 50.179 1.00 0.00 C ATOM 569 O ILE 155 19.771 7.061 50.134 1.00 0.00 O ATOM 570 N CYS 156 21.483 8.414 50.675 1.00 0.00 N ATOM 571 CA CYS 156 20.596 9.482 51.016 1.00 0.00 C ATOM 572 C CYS 156 21.025 10.543 50.059 1.00 0.00 C ATOM 573 O CYS 156 22.169 11.038 50.144 1.00 0.00 O ATOM 574 N ALA 157 20.128 10.912 49.154 1.00 0.00 N ATOM 575 CA ALA 157 20.486 11.898 48.146 1.00 0.00 C ATOM 576 C ALA 157 19.285 12.650 47.557 1.00 0.00 C ATOM 577 O ALA 157 18.130 12.518 48.012 1.00 0.00 O ATOM 578 N PRO 158 19.598 13.404 46.503 1.00 0.00 N ATOM 579 CA PRO 158 18.634 14.101 45.655 1.00 0.00 C ATOM 580 C PRO 158 17.732 13.074 44.952 1.00 0.00 C ATOM 581 O PRO 158 18.199 11.995 44.565 1.00 0.00 O ATOM 582 N LEU 159 16.436 13.390 44.846 1.00 0.00 N ATOM 583 CA LEU 159 15.517 12.771 43.897 1.00 0.00 C ATOM 584 C LEU 159 16.129 12.660 42.462 1.00 0.00 C ATOM 585 O LEU 159 16.122 11.607 41.822 1.00 0.00 O ATOM 586 N ILE 160 16.699 13.765 41.985 1.00 0.00 N ATOM 587 CA ILE 160 17.499 13.802 40.772 1.00 0.00 C ATOM 588 C ILE 160 18.609 12.725 40.742 1.00 0.00 C ATOM 589 O ILE 160 18.854 12.109 39.709 1.00 0.00 O ATOM 590 N ALA 161 19.258 12.451 41.873 1.00 0.00 N ATOM 591 CA ALA 161 20.257 11.382 41.886 1.00 0.00 C ATOM 592 C ALA 161 19.584 10.018 41.697 1.00 0.00 C ATOM 593 O ALA 161 20.097 9.135 40.975 1.00 0.00 O ATOM 594 N ALA 162 18.416 9.868 42.329 1.00 0.00 N ATOM 595 CA ALA 162 17.567 8.673 42.215 1.00 0.00 C ATOM 596 C ALA 162 17.108 8.519 40.778 1.00 0.00 C ATOM 597 O ALA 162 17.413 7.522 40.171 1.00 0.00 O ATOM 598 N GLU 163 16.373 9.501 40.239 1.00 0.00 N ATOM 599 CA GLU 163 16.160 9.611 38.793 1.00 0.00 C ATOM 600 C GLU 163 17.245 8.874 38.017 1.00 0.00 C ATOM 601 O GLU 163 17.015 7.876 37.291 1.00 0.00 O ATOM 602 N GLN 164 18.438 9.419 38.231 1.00 0.00 N ATOM 603 CA GLN 164 19.586 9.365 37.351 1.00 0.00 C ATOM 604 C GLN 164 20.263 8.014 37.507 1.00 0.00 C ATOM 605 O GLN 164 20.600 7.367 36.518 1.00 0.00 O ATOM 606 N PRO 165 20.474 7.585 38.749 1.00 0.00 N ATOM 607 CA PRO 165 21.111 6.312 38.933 1.00 0.00 C ATOM 608 C PRO 165 20.066 5.203 38.960 1.00 0.00 C ATOM 609 O PRO 165 20.371 4.096 39.402 1.00 0.00 O ATOM 610 N GLY 166 18.859 5.504 38.440 1.00 0.00 N ATOM 611 CA GLY 166 17.732 4.544 38.313 1.00 0.00 C ATOM 612 C GLY 166 17.216 3.893 39.605 1.00 0.00 C ATOM 613 O GLY 166 16.564 2.835 39.573 1.00 0.00 O ATOM 614 N LEU 167 17.513 4.537 40.733 1.00 0.00 N ATOM 615 CA LEU 167 17.145 4.080 42.069 1.00 0.00 C ATOM 616 C LEU 167 15.650 4.382 42.323 1.00 0.00 C ATOM 617 O LEU 167 15.073 5.202 41.586 1.00 0.00 O ATOM 618 N ASN 168 15.033 3.727 43.321 1.00 0.00 N ATOM 619 CA ASN 168 13.713 4.145 43.857 1.00 0.00 C ATOM 620 C ASN 168 13.834 4.981 45.134 1.00 0.00 C ATOM 621 O ASN 168 14.737 4.741 45.933 1.00 0.00 O ATOM 622 N VAL 169 12.935 5.964 45.297 1.00 0.00 N ATOM 623 CA VAL 169 12.741 6.686 46.571 1.00 0.00 C ATOM 624 C VAL 169 12.095 5.748 47.555 1.00 0.00 C ATOM 625 O VAL 169 11.007 5.205 47.286 1.00 0.00 O ATOM 626 N LEU 170 12.751 5.538 48.686 1.00 0.00 N ATOM 627 CA LEU 170 12.120 4.768 49.753 1.00 0.00 C ATOM 628 C LEU 170 11.361 5.690 50.686 1.00 0.00 C ATOM 629 O LEU 170 10.363 5.283 51.283 1.00 0.00 O ATOM 630 N ALA 171 11.814 6.946 50.763 1.00 0.00 N ATOM 631 CA ALA 171 11.412 7.883 51.806 1.00 0.00 C ATOM 632 C ALA 171 11.777 9.317 51.432 1.00 0.00 C ATOM 633 O ALA 171 12.970 9.630 51.250 1.00 0.00 O ATOM 634 N GLU 172 10.771 10.201 51.360 1.00 0.00 N ATOM 635 CA GLU 172 10.974 11.659 51.152 1.00 0.00 C ATOM 636 C GLU 172 11.003 12.490 52.471 1.00 0.00 C ATOM 637 O GLU 172 10.619 11.989 53.538 1.00 0.00 O ATOM 638 N ASP 173 11.454 13.755 52.384 1.00 0.00 N ATOM 639 CA ASP 173 11.828 14.578 53.560 1.00 0.00 C ATOM 640 C ASP 173 12.474 13.772 54.675 1.00 0.00 C ATOM 641 O ASP 173 11.902 13.674 55.761 1.00 0.00 O ATOM 642 N ILE 174 13.649 13.199 54.421 1.00 0.00 N ATOM 643 CA ILE 174 14.210 12.242 55.386 1.00 0.00 C ATOM 644 C ILE 174 14.736 12.872 56.712 1.00 0.00 C ATOM 645 O ILE 174 14.609 12.272 57.818 1.00 0.00 O ATOM 646 N GLY 175 15.330 14.058 56.577 1.00 0.00 N ATOM 647 CA GLY 175 15.672 14.926 57.699 1.00 0.00 C ATOM 648 C GLY 175 14.372 15.593 58.152 1.00 0.00 C ATOM 649 O GLY 175 13.473 15.781 57.355 1.00 0.00 O ATOM 650 N ASP 176 14.196 15.902 59.418 1.00 0.00 N ATOM 651 CA ASP 176 12.917 16.578 59.737 1.00 0.00 C ATOM 652 C ASP 176 13.144 18.042 59.755 1.00 0.00 C ATOM 653 O ASP 176 12.821 18.712 60.720 1.00 0.00 O ATOM 654 N ASN 177 13.758 18.493 58.661 1.00 0.00 N ATOM 655 CA ASN 177 13.913 19.892 58.299 1.00 0.00 C ATOM 656 C ASN 177 13.300 20.063 56.943 1.00 0.00 C ATOM 657 O ASN 177 13.730 19.446 56.005 1.00 0.00 O ATOM 658 N PRO 178 12.261 20.873 56.842 1.00 0.00 N ATOM 659 CA PRO 178 11.958 21.474 55.556 1.00 0.00 C ATOM 660 C PRO 178 12.696 22.796 55.661 1.00 0.00 C ATOM 661 O PRO 178 13.383 23.027 56.660 1.00 0.00 O ATOM 662 N ASP 179 12.622 23.666 54.666 1.00 0.00 N ATOM 663 CA ASP 179 13.336 24.911 54.810 1.00 0.00 C ATOM 664 C ASP 179 14.868 24.707 55.030 1.00 0.00 C ATOM 665 O ASP 179 15.566 25.418 55.756 1.00 0.00 O ATOM 666 N ALA 180 15.388 23.717 54.341 1.00 0.00 N ATOM 667 CA ALA 180 16.782 23.683 54.088 1.00 0.00 C ATOM 668 C ALA 180 16.933 24.130 52.624 1.00 0.00 C ATOM 669 O ALA 180 16.744 23.335 51.706 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 357 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 42.47 73.8 172 95.6 180 ARMSMC SECONDARY STRUCTURE . . 28.28 84.8 79 98.8 80 ARMSMC SURFACE . . . . . . . . 46.35 75.5 110 94.8 116 ARMSMC BURIED . . . . . . . . 34.53 71.0 62 96.9 64 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 66 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 60 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 29 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 50 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 4 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 1 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.29 (Number of atoms: 90) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.29 90 98.9 91 CRMSCA CRN = ALL/NP . . . . . 0.0254 CRMSCA SECONDARY STRUCTURE . . 2.17 41 102.5 40 CRMSCA SURFACE . . . . . . . . 2.31 59 100.0 59 CRMSCA BURIED . . . . . . . . 2.25 31 96.9 32 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.22 357 79.5 449 CRMSMC SECONDARY STRUCTURE . . 2.14 161 80.9 199 CRMSMC SURFACE . . . . . . . . 2.26 233 80.6 289 CRMSMC BURIED . . . . . . . . 2.14 124 77.5 160 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 293 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 241 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 128 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 188 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 105 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.22 357 54.3 657 CRMSALL SECONDARY STRUCTURE . . 2.14 161 55.9 288 CRMSALL SURFACE . . . . . . . . 2.26 233 55.0 424 CRMSALL BURIED . . . . . . . . 2.14 124 53.2 233 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.688 1.000 0.500 90 98.9 91 ERRCA SECONDARY STRUCTURE . . 1.678 1.000 0.500 41 102.5 40 ERRCA SURFACE . . . . . . . . 1.779 1.000 0.500 59 100.0 59 ERRCA BURIED . . . . . . . . 1.515 1.000 0.500 31 96.9 32 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.649 1.000 0.500 357 79.5 449 ERRMC SECONDARY STRUCTURE . . 1.653 1.000 0.500 161 80.9 199 ERRMC SURFACE . . . . . . . . 1.746 1.000 0.500 233 80.6 289 ERRMC BURIED . . . . . . . . 1.468 1.000 0.500 124 77.5 160 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 293 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 241 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 128 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 188 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 105 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.649 1.000 0.500 357 54.3 657 ERRALL SECONDARY STRUCTURE . . 1.653 1.000 0.500 161 55.9 288 ERRALL SURFACE . . . . . . . . 1.746 1.000 0.500 233 55.0 424 ERRALL BURIED . . . . . . . . 1.468 1.000 0.500 124 53.2 233 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 43 59 74 85 89 89 91 DISTCA CA (P) 47.25 64.84 81.32 93.41 97.80 91 DISTCA CA (RMS) 0.59 0.89 1.39 1.89 2.30 DISTCA ALL (N) 174 247 297 342 356 356 657 DISTALL ALL (P) 26.48 37.60 45.21 52.05 54.19 657 DISTALL ALL (RMS) 0.61 0.96 1.34 1.86 2.22 DISTALL END of the results output