####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 50 ( 248), selected 50 , name T0531TS330_1-D1 # Molecule2: number of CA atoms 58 ( 1017), selected 50 , name T0531-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0531TS330_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 19 - 45 4.96 14.96 LCS_AVERAGE: 37.21 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 38 - 46 1.84 15.00 LCS_AVERAGE: 11.10 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 14 - 19 0.74 20.50 LCS_AVERAGE: 7.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 50 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 6 E 6 3 5 16 0 1 3 3 5 8 9 10 11 12 12 13 14 15 16 19 21 23 25 28 LCS_GDT F 7 F 7 4 5 16 3 4 6 6 7 8 8 9 11 12 13 13 14 15 16 17 21 23 25 28 LCS_GDT P 8 P 8 4 5 16 3 4 6 6 7 9 10 11 12 12 13 13 14 15 16 17 20 22 23 26 LCS_GDT C 9 C 9 4 5 16 3 4 6 6 7 8 10 11 12 12 13 13 14 15 16 17 20 22 23 26 LCS_GDT W 10 W 10 4 5 16 3 4 4 5 7 9 10 11 12 12 13 13 14 15 16 17 19 22 23 26 LCS_GDT L 11 L 11 4 5 16 3 3 4 4 7 9 10 11 12 12 13 13 14 15 16 17 19 22 22 25 LCS_GDT V 12 V 12 4 8 16 3 3 4 4 5 5 6 8 10 12 12 13 13 14 16 17 19 19 21 25 LCS_GDT E 13 E 13 4 8 16 3 3 6 7 8 9 10 11 12 12 13 13 14 15 16 17 19 19 22 25 LCS_GDT E 14 E 14 6 8 16 3 5 6 7 8 9 10 11 12 12 13 13 14 15 16 17 18 19 21 25 LCS_GDT F 15 F 15 6 8 16 3 5 6 7 8 9 10 11 12 12 13 13 14 15 16 17 19 22 23 25 LCS_GDT V 16 V 16 6 8 16 3 5 6 7 8 9 10 11 12 12 13 13 14 15 16 17 19 22 24 29 LCS_GDT V 17 V 17 6 8 16 3 5 6 7 8 9 10 11 12 12 13 16 20 24 28 30 31 33 33 33 LCS_GDT A 18 A 18 6 8 16 3 5 6 7 8 9 10 11 12 12 13 17 23 27 29 30 31 33 33 33 LCS_GDT E 19 E 19 6 8 27 3 5 6 7 8 9 10 12 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT E 20 E 20 5 8 27 3 4 6 7 8 9 11 12 15 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT C 21 C 21 3 6 27 3 3 4 5 7 8 11 12 13 14 18 21 24 27 29 30 31 33 33 33 LCS_GDT S 22 S 22 5 6 27 3 4 5 5 7 8 11 12 15 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT P 23 P 23 5 6 27 3 4 5 5 7 8 11 12 15 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT C 24 C 24 5 6 27 3 4 5 5 7 8 11 12 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT S 25 S 25 5 6 27 4 4 5 6 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT N 26 N 26 5 6 27 4 4 5 6 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT F 27 F 27 5 6 27 4 4 5 6 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT R 28 R 28 5 6 27 4 4 5 6 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT A 29 A 29 5 6 27 3 4 5 6 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT K 30 K 30 4 6 27 3 4 4 4 6 8 10 12 13 14 16 20 23 26 27 28 31 33 33 33 LCS_GDT T 31 T 31 4 4 27 3 4 4 5 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT T 32 T 32 4 4 27 3 4 4 4 5 7 8 11 15 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT P 33 P 33 4 4 27 3 4 4 5 7 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT E 34 E 34 3 4 27 3 3 4 4 4 4 7 9 12 13 14 22 26 27 29 30 31 33 33 33 LCS_GDT C 35 C 35 3 4 27 3 3 4 4 7 11 12 15 15 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT G 36 G 36 3 6 27 3 3 6 6 7 8 10 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT P 37 P 37 3 6 27 3 3 6 6 7 8 10 11 14 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT T 38 T 38 4 9 27 3 3 6 7 8 8 10 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT G 39 G 39 4 9 27 3 3 4 5 8 8 11 12 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT Y 40 Y 40 4 9 27 3 3 6 7 8 9 11 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT V 41 V 41 4 9 27 3 4 5 6 7 11 12 15 15 19 22 25 26 27 29 30 31 33 33 33 LCS_GDT E 42 E 42 5 9 27 4 4 6 7 8 9 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT K 43 K 43 5 9 27 4 4 6 7 8 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT I 44 I 44 5 9 27 4 4 6 7 8 8 10 12 16 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT T 45 T 45 5 9 27 4 4 6 7 8 8 10 10 14 19 24 25 26 27 29 30 31 33 33 33 LCS_GDT C 46 C 46 5 9 24 4 4 6 7 8 8 9 10 13 17 21 23 26 27 29 30 31 31 32 33 LCS_GDT S 47 S 47 4 5 14 3 4 4 4 5 6 6 7 9 10 11 13 14 16 20 24 28 31 31 33 LCS_GDT S 48 S 48 4 6 13 3 4 4 4 5 6 6 7 9 10 11 13 14 16 16 18 19 20 24 31 LCS_GDT S 49 S 49 4 6 13 3 4 4 5 5 6 6 7 9 10 11 13 14 16 16 17 18 19 20 21 LCS_GDT K 50 K 50 4 6 13 3 3 4 5 5 6 6 7 8 10 11 13 14 16 16 18 18 19 23 26 LCS_GDT R 51 R 51 4 6 13 3 3 4 5 5 6 6 7 9 10 11 13 14 16 16 18 18 19 23 25 LCS_GDT N 52 N 52 4 6 13 3 3 4 5 5 6 6 7 9 10 13 14 15 19 21 25 28 33 33 33 LCS_GDT E 53 E 53 4 6 13 3 3 4 5 5 8 10 11 12 14 15 21 22 23 25 27 31 33 33 33 LCS_GDT F 54 F 54 3 3 13 3 3 3 4 6 9 10 12 15 16 18 21 26 26 27 29 31 33 33 33 LCS_GDT K 55 K 55 3 3 13 3 3 3 5 7 11 12 15 15 19 24 25 26 27 29 30 31 33 33 33 LCS_AVERAGE LCS_A: 18.61 ( 7.52 11.10 37.21 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 11 12 15 16 19 24 25 26 27 29 30 31 33 33 33 GDT PERCENT_AT 6.90 8.62 10.34 12.07 13.79 18.97 20.69 25.86 27.59 32.76 41.38 43.10 44.83 46.55 50.00 51.72 53.45 56.90 56.90 56.90 GDT RMS_LOCAL 0.20 0.52 0.74 1.08 1.40 2.27 2.43 3.22 3.84 4.02 4.43 4.51 4.70 4.83 5.15 5.42 5.55 6.08 6.08 5.97 GDT RMS_ALL_AT 16.58 20.74 20.50 19.90 20.75 16.79 16.47 16.34 15.16 15.24 15.08 15.12 14.87 14.84 14.61 14.40 14.49 14.98 14.98 14.68 # Checking swapping # possible swapping detected: E 14 E 14 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 6 E 6 23.695 4 0.621 0.558 25.767 0.000 0.000 LGA F 7 F 7 26.807 7 0.589 0.589 28.020 0.000 0.000 LGA P 8 P 8 27.727 2 0.233 0.305 28.788 0.000 0.000 LGA C 9 C 9 30.581 1 0.638 0.587 32.934 0.000 0.000 LGA W 10 W 10 29.822 9 0.670 0.607 31.888 0.000 0.000 LGA L 11 L 11 33.670 3 0.635 0.614 34.985 0.000 0.000 LGA V 12 V 12 36.430 2 0.174 0.179 38.116 0.000 0.000 LGA E 13 E 13 36.295 4 0.563 0.574 36.931 0.000 0.000 LGA E 14 E 14 32.149 0 0.534 1.081 35.884 0.000 0.000 LGA F 15 F 15 26.431 6 0.283 0.337 28.734 0.000 0.000 LGA V 16 V 16 21.162 0 0.020 0.042 23.791 0.000 0.000 LGA V 17 V 17 15.897 2 0.028 0.038 17.635 0.000 0.000 LGA A 18 A 18 12.844 1 0.636 0.636 13.954 0.000 0.000 LGA E 19 E 19 9.467 5 0.403 0.403 11.874 0.476 0.212 LGA E 20 E 20 12.164 5 0.660 0.660 12.480 0.000 0.000 LGA C 21 C 21 13.561 1 0.016 0.014 15.724 0.000 0.000 LGA S 22 S 22 10.195 1 0.175 0.256 11.521 0.119 0.079 LGA P 23 P 23 8.435 2 0.077 0.111 8.627 9.524 6.463 LGA C 24 C 24 6.120 1 0.101 0.105 7.627 33.571 23.571 LGA S 25 S 25 2.426 1 0.619 0.604 5.243 62.857 46.270 LGA N 26 N 26 2.538 3 0.004 0.006 2.956 60.952 37.619 LGA F 27 F 27 2.285 6 0.113 0.113 2.852 62.857 28.745 LGA R 28 R 28 2.761 6 0.531 0.497 3.794 55.595 25.411 LGA A 29 A 29 2.536 0 0.602 0.602 5.262 46.310 48.476 LGA K 30 K 30 6.906 4 0.661 0.600 9.632 23.095 10.317 LGA T 31 T 31 2.686 2 0.194 0.197 4.157 50.357 36.939 LGA T 32 T 32 5.243 2 0.587 0.580 7.339 24.881 16.667 LGA P 33 P 33 3.318 2 0.064 0.060 5.723 38.214 33.469 LGA E 34 E 34 7.403 5 0.218 0.218 8.174 13.571 6.032 LGA C 35 C 35 3.867 1 0.474 0.463 4.479 45.238 36.349 LGA G 36 G 36 4.689 0 0.594 0.594 5.102 36.190 36.190 LGA P 37 P 37 7.170 2 0.590 0.584 8.628 10.357 6.327 LGA T 38 T 38 4.903 2 0.537 0.495 5.170 33.095 23.401 LGA G 39 G 39 6.129 0 0.230 0.230 6.129 22.738 22.738 LGA Y 40 Y 40 3.245 7 0.295 0.412 4.215 52.262 22.183 LGA V 41 V 41 2.669 2 0.504 0.484 4.367 59.286 39.184 LGA E 42 E 42 2.756 4 0.169 0.225 5.171 66.905 32.646 LGA K 43 K 43 2.544 4 0.129 0.148 6.747 37.976 21.693 LGA I 44 I 44 7.625 3 0.036 0.046 9.625 17.381 8.750 LGA T 45 T 45 8.417 2 0.185 0.215 12.848 1.905 1.497 LGA C 46 C 46 13.187 1 0.399 0.399 15.486 0.000 0.000 LGA S 47 S 47 18.779 2 0.124 0.124 21.140 0.000 0.000 LGA S 48 S 48 19.364 1 0.157 0.192 19.385 0.000 0.000 LGA S 49 S 49 18.802 1 0.598 0.561 19.940 0.000 0.000 LGA K 50 K 50 15.834 4 0.311 0.351 16.638 0.000 0.000 LGA R 51 R 51 14.476 6 0.092 0.101 15.459 0.000 0.000 LGA N 52 N 52 10.595 3 0.615 0.555 12.191 0.000 0.000 LGA E 53 E 53 9.695 4 0.562 0.569 10.295 1.786 0.794 LGA F 54 F 54 6.515 6 0.566 0.519 6.992 22.381 9.697 LGA K 55 K 55 3.635 4 0.539 0.550 8.143 27.143 19.259 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 50 200 200 100.00 394 248 62.94 58 SUMMARY(RMSD_GDC): 12.329 12.305 12.689 15.811 10.362 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 50 58 4.0 15 3.22 24.569 21.658 0.452 LGA_LOCAL RMSD: 3.222 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.341 Number of assigned atoms: 50 Std_ASGN_ATOMS RMSD: 12.329 Standard rmsd on all 50 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.409444 * X + -0.847849 * Y + -0.336911 * Z + -1.227502 Y_new = 0.589840 * X + 0.527728 * Y + -0.611222 * Z + 7.530528 Z_new = 0.696021 * X + 0.051538 * Y + 0.716170 * Z + 1.501586 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.964000 -0.769841 0.071839 [DEG: 55.2331 -44.1086 4.1161 ] ZXZ: -0.503770 0.772498 1.496885 [DEG: -28.8639 44.2609 85.7652 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0531TS330_1-D1 REMARK 2: T0531-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0531TS330_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 50 58 4.0 15 3.22 21.658 12.33 REMARK ---------------------------------------------------------- MOLECULE T0531TS330_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0531 REMARK MODEL 1 REMARK PARENT 2o13_a ATOM 71 N GLU 6 9.769 12.952 9.195 1.00 20.00 N ATOM 72 CA GLU 6 10.662 14.086 9.377 1.00 20.00 C ATOM 73 C GLU 6 10.370 14.810 10.685 1.00 20.00 C ATOM 74 O GLU 6 11.229 15.505 11.233 1.00 20.00 O ATOM 75 CB GLU 6 10.507 15.054 8.208 1.00 20.00 C ATOM 81 N PHE 7 9.149 14.640 11.173 1.00 20.00 N ATOM 82 CA PHE 7 8.705 15.360 12.348 1.00 20.00 C ATOM 83 C PHE 7 8.340 16.790 12.009 1.00 20.00 C ATOM 84 O PHE 7 8.461 17.689 12.838 1.00 20.00 O ATOM 88 N PRO 8 7.875 16.991 10.787 1.00 20.00 N ATOM 89 CA PRO 8 7.601 18.329 10.274 1.00 20.00 C ATOM 90 C PRO 8 6.141 18.460 9.857 1.00 20.00 C ATOM 91 O PRO 8 5.635 17.648 9.089 1.00 20.00 O ATOM 92 CB PRO 8 8.520 18.624 9.084 1.00 20.00 C ATOM 110 N CYS 9 5.476 19.485 10.371 1.00 20.00 N ATOM 111 CA CYS 9 4.070 19.724 10.073 1.00 20.00 C ATOM 112 C CYS 9 3.852 20.012 8.588 1.00 20.00 C ATOM 113 O CYS 9 4.628 20.738 7.959 1.00 20.00 O ATOM 114 CB CYS 9 3.562 20.891 10.914 1.00 20.00 C ATOM 121 N TRP 10 2.794 19.435 8.034 1.00 20.00 N ATOM 122 CA TRP 10 2.455 19.622 6.630 1.00 20.00 C ATOM 123 C TRP 10 1.026 20.136 6.516 1.00 20.00 C ATOM 124 O TRP 10 0.167 19.757 7.309 1.00 20.00 O ATOM 125 CB TRP 10 2.586 18.303 5.832 1.00 20.00 C ATOM 137 N LEU 11 0.770 21.009 5.552 1.00 20.00 N ATOM 138 CA LEU 11 -0.578 21.511 5.346 1.00 20.00 C ATOM 139 C LEU 11 -0.990 21.377 3.881 1.00 20.00 C ATOM 140 O LEU 11 -0.274 20.762 3.097 1.00 20.00 O ATOM 141 CB LEU 11 -0.706 22.957 5.825 1.00 20.00 C ATOM 158 N VAL 12 -2.126 21.990 3.532 1.00 20.00 N ATOM 159 CA VAL 12 -2.823 21.769 2.254 1.00 20.00 C ATOM 160 C VAL 12 -1.905 21.765 1.028 1.00 20.00 C ATOM 161 O VAL 12 -2.139 20.996 0.096 1.00 20.00 O ATOM 162 CB VAL 12 -3.915 22.811 2.078 1.00 20.00 C ATOM 168 N GLU 13 -0.877 22.610 1.026 1.00 20.00 N ATOM 169 CA GLU 13 0.028 22.723 -0.121 1.00 20.00 C ATOM 170 C GLU 13 0.628 21.371 -0.512 1.00 20.00 C ATOM 171 O GLU 13 0.605 20.990 -1.686 1.00 20.00 O ATOM 172 CB GLU 13 1.134 23.720 0.182 1.00 20.00 C ATOM 178 N GLU 14 1.158 20.651 0.469 1.00 20.00 N ATOM 179 CA GLU 14 1.756 19.337 0.233 1.00 20.00 C ATOM 180 C GLU 14 0.942 18.256 0.927 1.00 20.00 C ATOM 181 O GLU 14 1.412 17.139 1.114 1.00 20.00 O ATOM 182 CB GLU 14 3.197 19.302 0.750 1.00 20.00 C ATOM 183 CG GLU 14 4.191 20.017 -0.147 1.00 20.00 C ATOM 184 CD GLU 14 4.402 19.295 -1.461 1.00 20.00 C ATOM 185 OE1 GLU 14 3.649 19.570 -2.420 1.00 20.00 O ATOM 186 OE2 GLU 14 5.320 18.455 -1.545 1.00 20.00 O ATOM 193 N PHE 15 -0.278 18.605 1.301 1.00 20.00 N ATOM 194 CA PHE 15 -1.125 17.732 2.100 1.00 20.00 C ATOM 195 C PHE 15 -1.566 16.485 1.330 1.00 20.00 C ATOM 196 O PHE 15 -2.582 16.481 0.634 1.00 20.00 O ATOM 197 CB PHE 15 -2.339 18.523 2.625 1.00 20.00 C ATOM 215 N VAL 16 -0.764 15.440 1.452 1.00 20.00 N ATOM 216 CA VAL 16 -1.130 14.108 1.001 1.00 20.00 C ATOM 217 C VAL 16 -1.364 13.238 2.224 1.00 20.00 C ATOM 218 O VAL 16 -0.446 12.954 2.990 1.00 20.00 O ATOM 219 CB VAL 16 -0.049 13.494 0.084 1.00 20.00 C ATOM 220 CG1 VAL 16 -0.156 14.069 -1.319 1.00 20.00 C ATOM 221 CG2 VAL 16 1.341 13.742 0.642 1.00 20.00 C ATOM 231 N VAL 17 -2.608 12.840 2.416 1.00 20.00 N ATOM 232 CA VAL 17 -3.031 12.265 3.681 1.00 20.00 C ATOM 233 C VAL 17 -2.753 10.773 3.765 1.00 20.00 C ATOM 234 O VAL 17 -3.505 9.956 3.231 1.00 20.00 O ATOM 235 CB VAL 17 -4.517 12.541 3.910 1.00 20.00 C ATOM 248 N ALA 18 -1.654 10.430 4.419 1.00 20.00 N ATOM 249 CA ALA 18 -1.412 9.059 4.795 1.00 20.00 C ATOM 250 C ALA 18 -1.712 8.858 6.265 1.00 20.00 C ATOM 251 O ALA 18 -1.213 9.603 7.110 1.00 20.00 O ATOM 255 N GLU 19 -2.554 7.889 6.580 1.00 20.00 N ATOM 256 CA GLU 19 -2.914 7.653 7.966 1.00 20.00 C ATOM 257 C GLU 19 -3.719 8.799 8.553 1.00 20.00 C ATOM 258 O GLU 19 -3.662 9.055 9.759 1.00 20.00 O ATOM 262 N GLU 20 -4.456 9.494 7.695 1.00 20.00 N ATOM 263 CA GLU 20 -5.325 10.570 8.137 1.00 20.00 C ATOM 264 C GLU 20 -4.602 11.887 8.349 1.00 20.00 C ATOM 265 O GLU 20 -5.191 12.845 8.853 1.00 20.00 O ATOM 269 N CYS 21 -3.334 11.956 7.973 1.00 20.00 N ATOM 270 CA CYS 21 -2.555 13.172 8.168 1.00 20.00 C ATOM 271 C CYS 21 -1.718 13.481 6.933 1.00 20.00 C ATOM 272 O CYS 21 -1.240 12.575 6.261 1.00 20.00 O ATOM 273 CB CYS 21 -1.656 13.036 9.403 1.00 20.00 C ATOM 291 N SER 22 -1.579 14.772 6.595 1.00 20.00 N ATOM 292 CA SER 22 -0.731 15.214 5.486 1.00 20.00 C ATOM 293 C SER 22 0.744 14.919 5.712 1.00 20.00 C ATOM 294 O SER 22 1.339 15.365 6.694 1.00 20.00 O ATOM 295 CB SER 22 -0.952 16.727 5.439 1.00 20.00 C ATOM 305 N PRO 23 1.316 14.162 4.797 1.00 20.00 N ATOM 306 CA PRO 23 2.745 13.915 4.780 1.00 20.00 C ATOM 307 C PRO 23 3.374 14.807 3.727 1.00 20.00 C ATOM 308 O PRO 23 2.666 15.450 2.956 1.00 20.00 O ATOM 309 CB PRO 23 3.044 12.448 4.436 1.00 20.00 C ATOM 329 N CYS 24 4.695 14.866 3.700 1.00 20.00 N ATOM 330 CA CYS 24 5.387 15.471 2.574 1.00 20.00 C ATOM 331 C CYS 24 5.167 14.576 1.371 1.00 20.00 C ATOM 332 O CYS 24 5.256 13.366 1.506 1.00 20.00 O ATOM 333 CB CYS 24 6.893 15.588 2.844 1.00 20.00 C ATOM 346 N SER 25 4.865 15.145 0.206 1.00 20.00 N ATOM 347 CA SER 25 4.690 14.324 -0.994 1.00 20.00 C ATOM 348 C SER 25 5.937 13.477 -1.257 1.00 20.00 C ATOM 349 O SER 25 5.860 12.397 -1.846 1.00 20.00 O ATOM 350 CB SER 25 4.389 15.173 -2.229 1.00 20.00 C ATOM 368 N ASN 26 7.080 13.977 -0.812 1.00 20.00 N ATOM 369 CA ASN 26 8.333 13.253 -0.927 1.00 20.00 C ATOM 370 C ASN 26 8.338 12.021 -0.029 1.00 20.00 C ATOM 371 O ASN 26 8.907 10.990 -0.376 1.00 20.00 O ATOM 372 CB ASN 26 9.519 14.160 -0.552 1.00 20.00 C ATOM 382 N PHE 27 7.681 12.140 1.117 1.00 20.00 N ATOM 383 CA PHE 27 7.659 11.084 2.117 1.00 20.00 C ATOM 384 C PHE 27 6.372 10.286 2.035 1.00 20.00 C ATOM 385 O PHE 27 6.209 9.271 2.712 1.00 20.00 O ATOM 386 CB PHE 27 7.808 11.704 3.485 1.00 20.00 C ATOM 392 N ARG 28 5.452 10.777 1.222 1.00 20.00 N ATOM 393 CA ARG 28 4.303 10.004 0.812 1.00 20.00 C ATOM 394 C ARG 28 4.817 8.922 -0.116 1.00 20.00 C ATOM 395 O ARG 28 4.664 8.990 -1.330 1.00 20.00 O ATOM 396 CB ARG 28 3.295 10.904 0.105 1.00 20.00 C ATOM 412 N ALA 29 5.474 7.960 0.487 1.00 20.00 N ATOM 413 CA ALA 29 6.311 7.013 -0.211 1.00 20.00 C ATOM 414 C ALA 29 6.360 5.750 0.603 1.00 20.00 C ATOM 415 O ALA 29 5.762 5.682 1.675 1.00 20.00 O ATOM 416 CB ALA 29 7.737 7.586 -0.294 1.00 20.00 C ATOM 436 N LYS 30 7.071 4.761 0.122 1.00 20.00 N ATOM 437 CA LYS 30 7.512 3.726 1.011 1.00 20.00 C ATOM 438 C LYS 30 9.023 3.724 1.038 1.00 20.00 C ATOM 439 O LYS 30 9.705 3.893 -0.001 1.00 20.00 O ATOM 440 CB LYS 30 6.957 2.349 0.664 1.00 20.00 C ATOM 446 N THR 31 9.519 3.598 2.251 1.00 20.00 N ATOM 447 CA THR 31 10.939 3.611 2.537 1.00 20.00 C ATOM 448 C THR 31 11.618 2.310 2.120 1.00 20.00 C ATOM 449 O THR 31 12.827 2.159 2.280 1.00 20.00 O ATOM 450 CB THR 31 11.152 3.876 4.019 1.00 20.00 C ATOM 456 N THR 32 10.844 1.371 1.586 1.00 20.00 N ATOM 457 CA THR 32 11.397 0.106 1.131 1.00 20.00 C ATOM 458 C THR 32 12.167 0.311 -0.165 1.00 20.00 C ATOM 459 O THR 32 13.302 -0.153 -0.308 1.00 20.00 O ATOM 460 CB THR 32 10.298 -0.957 0.899 1.00 20.00 C ATOM 475 N PRO 33 11.559 1.033 -1.092 1.00 20.00 N ATOM 476 CA PRO 33 12.134 1.218 -2.400 1.00 20.00 C ATOM 477 C PRO 33 12.712 2.619 -2.519 1.00 20.00 C ATOM 478 O PRO 33 13.688 2.854 -3.236 1.00 20.00 O ATOM 479 CB PRO 33 11.046 1.021 -3.443 1.00 20.00 C ATOM 485 N GLU 34 12.105 3.540 -1.783 1.00 20.00 N ATOM 486 CA GLU 34 12.467 4.933 -1.872 1.00 20.00 C ATOM 487 C GLU 34 11.625 5.653 -2.898 1.00 20.00 C ATOM 488 O GLU 34 12.061 6.637 -3.498 1.00 20.00 O ATOM 492 N CYS 35 10.402 5.171 -3.089 1.00 20.00 N ATOM 493 CA CYS 35 9.554 5.686 -4.162 1.00 20.00 C ATOM 494 C CYS 35 8.433 6.550 -3.622 1.00 20.00 C ATOM 495 O CYS 35 7.654 6.113 -2.776 1.00 20.00 O ATOM 496 CB CYS 35 8.963 4.546 -4.993 1.00 20.00 C ATOM 514 N GLY 36 8.363 7.775 -4.126 1.00 20.00 N ATOM 515 CA GLY 36 7.305 8.701 -3.765 1.00 20.00 C ATOM 516 C GLY 36 6.036 8.393 -4.557 1.00 20.00 C ATOM 517 O GLY 36 6.098 7.997 -5.726 1.00 20.00 O ATOM 525 N PRO 37 4.898 8.581 -3.918 1.00 20.00 N ATOM 526 CA PRO 37 3.619 8.207 -4.486 1.00 20.00 C ATOM 527 C PRO 37 2.829 9.445 -4.912 1.00 20.00 C ATOM 528 O PRO 37 2.710 10.415 -4.161 1.00 20.00 O ATOM 529 CB PRO 37 2.857 7.374 -3.453 1.00 20.00 C ATOM 544 N THR 38 2.316 9.408 -6.136 1.00 20.00 N ATOM 545 CA THR 38 1.606 10.538 -6.723 1.00 20.00 C ATOM 546 C THR 38 0.196 10.697 -6.156 1.00 20.00 C ATOM 547 O THR 38 -0.769 10.211 -6.751 1.00 20.00 O ATOM 548 CB THR 38 1.527 10.374 -8.238 1.00 20.00 C ATOM 559 N GLY 39 0.101 11.364 -5.001 1.00 20.00 N ATOM 560 CA GLY 39 -1.179 11.755 -4.391 1.00 20.00 C ATOM 561 C GLY 39 -1.940 10.558 -3.810 1.00 20.00 C ATOM 562 O GLY 39 -2.395 10.596 -2.663 1.00 20.00 O ATOM 570 N TYR 40 -2.088 9.518 -4.609 1.00 20.00 N ATOM 571 CA TYR 40 -2.726 8.286 -4.183 1.00 20.00 C ATOM 572 C TYR 40 -1.669 7.176 -4.129 1.00 20.00 C ATOM 573 O TYR 40 -0.499 7.463 -3.874 1.00 20.00 O ATOM 574 CB TYR 40 -3.871 7.916 -5.149 1.00 20.00 C ATOM 584 N VAL 41 -2.073 5.925 -4.381 1.00 20.00 N ATOM 585 CA VAL 41 -1.160 4.773 -4.323 1.00 20.00 C ATOM 586 C VAL 41 -0.730 4.523 -2.882 1.00 20.00 C ATOM 587 O VAL 41 0.286 3.877 -2.624 1.00 20.00 O ATOM 588 CB VAL 41 0.083 4.979 -5.208 1.00 20.00 C ATOM 598 N GLU 42 -1.537 5.013 -1.953 1.00 20.00 N ATOM 599 CA GLU 42 -1.198 4.985 -0.540 1.00 20.00 C ATOM 600 C GLU 42 -1.779 3.766 0.160 1.00 20.00 C ATOM 601 O GLU 42 -2.959 3.442 0.003 1.00 20.00 O ATOM 602 CB GLU 42 -1.671 6.274 0.181 1.00 20.00 C ATOM 614 N LYS 43 -0.937 3.074 0.904 1.00 20.00 N ATOM 615 CA LYS 43 -1.393 2.022 1.781 1.00 20.00 C ATOM 616 C LYS 43 -0.647 2.095 3.109 1.00 20.00 C ATOM 617 O LYS 43 0.582 2.032 3.142 1.00 20.00 O ATOM 618 CB LYS 43 -1.197 0.637 1.141 1.00 20.00 C ATOM 628 N ILE 44 -1.389 2.263 4.196 1.00 20.00 N ATOM 629 CA ILE 44 -0.791 2.367 5.522 1.00 20.00 C ATOM 630 C ILE 44 -0.631 0.998 6.164 1.00 20.00 C ATOM 631 O ILE 44 -1.526 0.150 6.082 1.00 20.00 O ATOM 632 CB ILE 44 -1.640 3.257 6.435 1.00 20.00 C ATOM 640 N THR 45 0.511 0.788 6.793 1.00 20.00 N ATOM 641 CA THR 45 0.755 -0.425 7.548 1.00 20.00 C ATOM 642 C THR 45 1.488 -0.073 8.839 1.00 20.00 C ATOM 643 O THR 45 2.701 0.148 8.844 1.00 20.00 O ATOM 644 CB THR 45 1.545 -1.433 6.698 1.00 20.00 C ATOM 662 N CYS 46 0.716 0.031 9.918 1.00 20.00 N ATOM 663 CA CYS 46 1.250 0.298 11.256 1.00 20.00 C ATOM 664 C CYS 46 1.905 1.674 11.345 1.00 20.00 C ATOM 665 O CYS 46 2.926 1.843 12.017 1.00 20.00 O ATOM 666 CB CYS 46 2.251 -0.785 11.686 1.00 20.00 C ATOM 674 N SER 47 1.327 2.653 10.664 1.00 20.00 N ATOM 675 CA SER 47 1.825 4.013 10.762 1.00 20.00 C ATOM 676 C SER 47 2.896 4.320 9.737 1.00 20.00 C ATOM 677 O SER 47 3.357 5.459 9.632 1.00 20.00 O ATOM 681 N SER 48 3.304 3.310 8.980 1.00 20.00 N ATOM 682 CA SER 48 4.315 3.500 7.958 1.00 20.00 C ATOM 683 C SER 48 3.672 3.386 6.581 1.00 20.00 C ATOM 684 O SER 48 2.858 2.493 6.337 1.00 20.00 O ATOM 685 CB SER 48 5.451 2.483 8.130 1.00 20.00 C ATOM 696 N SER 49 4.029 4.307 5.699 1.00 20.00 N ATOM 697 CA SER 49 3.433 4.383 4.374 1.00 20.00 C ATOM 698 C SER 49 4.139 3.416 3.428 1.00 20.00 C ATOM 699 O SER 49 5.367 3.298 3.453 1.00 20.00 O ATOM 700 CB SER 49 3.542 5.820 3.848 1.00 20.00 C ATOM 715 N LYS 50 3.356 2.705 2.623 1.00 20.00 N ATOM 716 CA LYS 50 3.903 1.794 1.628 1.00 20.00 C ATOM 717 C LYS 50 3.204 1.978 0.288 1.00 20.00 C ATOM 718 O LYS 50 1.991 2.211 0.237 1.00 20.00 O ATOM 719 CB LYS 50 3.763 0.339 2.085 1.00 20.00 C ATOM 736 N ARG 51 3.984 1.894 -0.786 1.00 20.00 N ATOM 737 CA ARG 51 3.454 1.934 -2.139 1.00 20.00 C ATOM 738 C ARG 51 2.517 0.754 -2.367 1.00 20.00 C ATOM 739 O ARG 51 2.764 -0.344 -1.875 1.00 20.00 O ATOM 740 CB ARG 51 4.596 1.851 -3.153 1.00 20.00 C ATOM 746 N ASN 52 1.454 0.983 -3.131 1.00 20.00 N ATOM 747 CA ASN 52 0.539 -0.089 -3.517 1.00 20.00 C ATOM 748 C ASN 52 1.285 -1.175 -4.294 1.00 20.00 C ATOM 749 O ASN 52 0.876 -2.334 -4.310 1.00 20.00 O ATOM 750 CB ASN 52 -0.620 0.459 -4.358 1.00 20.00 C ATOM 768 N GLU 53 2.381 -0.782 -4.938 1.00 20.00 N ATOM 769 CA GLU 53 3.199 -1.714 -5.703 1.00 20.00 C ATOM 770 C GLU 53 4.020 -2.590 -4.763 1.00 20.00 C ATOM 771 O GLU 53 4.030 -3.816 -4.886 1.00 20.00 O ATOM 772 CB GLU 53 4.157 -0.958 -6.650 1.00 20.00 C ATOM 784 N PHE 54 4.683 -1.951 -3.809 1.00 20.00 N ATOM 785 CA PHE 54 5.499 -2.651 -2.831 1.00 20.00 C ATOM 786 C PHE 54 4.626 -3.448 -1.869 1.00 20.00 C ATOM 787 O PHE 54 5.035 -4.488 -1.353 1.00 20.00 O ATOM 788 CB PHE 54 6.368 -1.634 -2.098 1.00 20.00 C ATOM 794 N LYS 55 3.418 -2.955 -1.639 1.00 20.00 N ATOM 795 CA LYS 55 2.432 -3.667 -0.842 1.00 20.00 C ATOM 796 C LYS 55 2.116 -5.016 -1.487 1.00 20.00 C ATOM 797 O LYS 55 2.143 -6.053 -0.825 1.00 20.00 O ATOM 798 CB LYS 55 1.158 -2.826 -0.715 1.00 20.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 248 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 91.03 33.7 98 86.0 114 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC BURIED . . . . . . . . 91.03 33.7 98 86.0 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 21.83 50.0 2 3.8 53 ARMSSC1 RELIABLE SIDE CHAINS . 30.69 0.0 1 2.0 49 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 BURIED . . . . . . . . 21.83 50.0 2 3.8 53 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 16.66 100.0 1 3.1 32 ARMSSC2 RELIABLE SIDE CHAINS . 16.66 100.0 1 3.6 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 BURIED . . . . . . . . 16.66 100.0 1 3.1 32 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 71.02 0.0 1 5.9 17 ARMSSC3 RELIABLE SIDE CHAINS . 71.02 0.0 1 5.9 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 BURIED . . . . . . . . 71.02 0.0 1 5.9 17 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.33 (Number of atoms: 50) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.33 50 86.2 58 CRMSCA CRN = ALL/NP . . . . . 0.2466 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSCA BURIED . . . . . . . . 12.33 50 86.2 58 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.50 242 84.0 288 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSMC BURIED . . . . . . . . 12.50 242 84.0 288 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 14.46 48 6.1 785 CRMSSC RELIABLE SIDE CHAINS . 14.52 46 6.0 769 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSSC BURIED . . . . . . . . 14.46 48 6.1 785 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.75 248 24.4 1017 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSALL BURIED . . . . . . . . 12.75 248 24.4 1017 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.647 0.305 0.340 50 86.2 58 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA BURIED . . . . . . . . 8.647 0.305 0.340 50 86.2 58 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.488 0.298 0.334 242 84.0 288 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC BURIED . . . . . . . . 8.488 0.298 0.334 242 84.0 288 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.387 0.256 0.271 48 6.1 785 ERRSC RELIABLE SIDE CHAINS . 7.405 0.258 0.274 46 6.0 769 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC BURIED . . . . . . . . 7.387 0.256 0.271 48 6.1 785 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.392 0.294 0.328 248 24.4 1017 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL BURIED . . . . . . . . 8.392 0.294 0.328 248 24.4 1017 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 6 19 50 58 DISTCA CA (P) 0.00 0.00 3.45 10.34 32.76 58 DISTCA CA (RMS) 0.00 0.00 2.59 3.90 6.93 DISTCA ALL (N) 1 2 6 27 91 248 1017 DISTALL ALL (P) 0.10 0.20 0.59 2.65 8.95 1017 DISTALL ALL (RMS) 0.46 1.02 2.23 4.00 7.08 DISTALL END of the results output