####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 50 ( 200), selected 50 , name T0531AL396_1-D1 # Molecule2: number of CA atoms 58 ( 1017), selected 50 , name T0531-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0531AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 39 - 63 3.41 24.31 LCS_AVERAGE: 34.72 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 49 - 58 1.73 24.16 LCS_AVERAGE: 12.59 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 49 - 56 0.94 24.36 LCS_AVERAGE: 8.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 50 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 6 E 6 4 8 16 0 3 4 6 8 9 9 11 11 12 12 14 16 17 18 18 18 20 21 22 LCS_GDT F 7 F 7 4 8 16 3 3 7 7 8 9 9 11 11 12 12 14 16 17 18 18 18 20 21 22 LCS_GDT P 8 P 8 4 8 16 3 5 7 7 8 9 9 11 11 12 12 14 16 17 18 18 18 20 21 22 LCS_GDT C 9 C 9 5 8 16 4 5 7 7 8 9 9 11 11 12 12 14 16 17 18 18 20 22 23 24 LCS_GDT W 10 W 10 5 8 16 4 4 5 6 8 9 9 11 11 12 12 14 16 17 19 19 20 22 23 24 LCS_GDT L 11 L 11 5 8 16 4 4 5 5 7 8 9 9 9 10 12 13 15 17 19 19 20 22 23 24 LCS_GDT V 12 V 12 5 8 16 4 4 5 6 7 8 9 9 10 11 12 14 16 17 19 19 20 22 23 24 LCS_GDT E 13 E 13 5 8 16 3 4 5 6 7 8 9 9 10 11 12 14 16 17 19 19 20 22 23 24 LCS_GDT E 14 E 14 3 6 16 3 3 4 5 5 8 9 11 11 12 12 14 16 17 19 19 20 22 23 24 LCS_GDT F 15 F 15 3 3 16 3 3 4 5 5 6 8 11 11 12 12 14 16 17 19 19 20 22 23 24 LCS_GDT V 16 V 16 3 5 16 3 3 3 3 4 5 7 9 11 12 12 14 15 17 19 19 20 22 23 24 LCS_GDT V 17 V 17 4 5 16 3 5 7 7 8 9 9 11 11 12 12 14 16 17 19 19 20 22 23 24 LCS_GDT A 18 A 18 4 5 16 3 5 7 7 8 9 9 11 11 12 12 14 16 17 18 18 19 22 23 24 LCS_GDT E 19 E 19 4 5 16 3 5 7 7 8 9 9 11 11 12 12 14 16 17 18 19 19 22 23 24 LCS_GDT E 20 E 20 4 5 16 1 4 7 7 8 9 9 11 11 12 12 14 16 17 19 19 20 22 23 24 LCS_GDT C 21 C 21 3 4 16 1 3 3 3 4 4 7 8 9 10 12 14 16 17 19 19 20 22 23 24 LCS_GDT S 22 S 22 3 4 14 0 3 3 3 4 5 7 8 8 10 11 14 16 17 18 19 19 22 23 24 LCS_GDT P 23 P 23 3 4 14 1 3 3 4 4 5 7 8 8 10 11 14 16 17 19 19 20 22 23 25 LCS_GDT C 24 C 24 3 4 14 3 3 3 4 4 5 6 8 8 10 11 12 14 17 19 19 20 22 23 25 LCS_GDT S 25 S 25 6 6 14 3 4 6 6 6 6 6 6 7 10 10 12 14 17 19 19 20 22 23 25 LCS_GDT N 26 N 26 6 6 14 4 4 6 6 6 6 6 7 8 10 10 12 13 17 19 19 20 22 23 25 LCS_GDT F 27 F 27 6 6 14 4 4 6 6 6 6 7 8 8 10 11 12 14 17 19 19 20 22 23 25 LCS_GDT R 28 R 28 6 6 14 4 4 6 6 6 6 7 8 8 10 11 12 14 17 19 19 20 22 23 25 LCS_GDT A 29 A 29 6 6 14 4 4 6 6 6 6 7 8 8 10 11 12 14 17 19 19 20 22 23 24 LCS_GDT K 30 K 30 6 6 14 3 4 6 6 6 6 7 8 8 10 11 11 14 16 19 19 20 22 23 25 LCS_GDT G 39 G 39 5 9 25 3 5 6 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT Y 40 Y 40 5 9 25 3 4 5 7 13 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT V 41 V 41 5 9 25 3 4 6 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT E 42 E 42 6 9 25 3 4 6 6 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT K 43 K 43 6 9 25 5 5 6 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT I 44 I 44 6 9 25 5 5 6 9 15 16 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT T 45 T 45 6 9 25 5 5 6 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT C 46 C 46 6 9 25 5 5 6 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT S 47 S 47 6 9 25 5 5 6 9 11 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT S 48 S 48 0 9 25 0 0 3 6 8 10 16 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT S 49 S 49 8 10 25 0 5 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT K 50 K 50 8 10 25 5 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT R 51 R 51 8 10 25 3 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT N 52 N 52 8 10 25 5 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT E 53 E 53 8 10 25 5 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT F 54 F 54 8 10 25 5 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT K 55 K 55 8 10 25 5 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT S 56 S 56 8 10 25 4 5 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT C 57 C 57 7 10 25 4 5 7 8 10 13 18 19 21 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT R 58 R 58 3 10 25 3 3 6 9 11 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT S 59 S 59 5 5 25 3 5 5 5 6 10 15 19 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT A 60 A 60 5 5 25 3 5 5 5 5 6 7 9 21 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT L 61 L 61 5 5 25 3 5 5 5 5 6 7 9 10 20 23 25 25 25 25 25 25 25 25 25 LCS_GDT M 62 M 62 5 5 25 3 5 5 5 5 6 7 19 22 23 24 25 25 25 25 25 25 25 25 25 LCS_GDT E 63 E 63 5 5 25 3 5 5 5 10 12 18 20 22 23 24 25 25 25 25 25 25 25 25 25 LCS_AVERAGE LCS_A: 18.76 ( 8.97 12.59 34.72 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 8 9 15 17 18 20 22 23 24 25 25 25 25 25 25 25 25 25 GDT PERCENT_AT 8.62 10.34 13.79 15.52 25.86 29.31 31.03 34.48 37.93 39.66 41.38 43.10 43.10 43.10 43.10 43.10 43.10 43.10 43.10 43.10 GDT RMS_LOCAL 0.13 0.35 0.94 1.47 2.00 2.26 2.33 2.70 2.92 3.03 3.22 3.41 3.41 3.41 3.41 3.41 3.41 3.41 3.41 3.41 GDT RMS_ALL_AT 28.44 24.33 24.36 24.43 24.21 24.04 24.10 24.26 24.29 24.34 24.29 24.31 24.31 24.31 24.31 24.31 24.31 24.31 24.31 24.31 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 6 E 6 29.646 5 0.385 0.385 29.882 0.000 0.000 LGA F 7 F 7 30.474 7 0.392 0.392 32.480 0.000 0.000 LGA P 8 P 8 31.787 3 0.270 0.270 34.434 0.000 0.000 LGA C 9 C 9 34.687 2 0.615 0.615 34.687 0.000 0.000 LGA W 10 W 10 33.501 10 0.017 0.017 34.229 0.000 0.000 LGA L 11 L 11 28.040 4 0.107 0.107 30.261 0.000 0.000 LGA V 12 V 12 27.696 3 0.208 0.208 28.610 0.000 0.000 LGA E 13 E 13 30.940 5 0.560 0.560 30.940 0.000 0.000 LGA E 14 E 14 29.521 5 0.603 0.603 30.354 0.000 0.000 LGA F 15 F 15 27.073 7 0.575 0.575 27.670 0.000 0.000 LGA V 16 V 16 26.965 3 0.582 0.582 27.763 0.000 0.000 LGA V 17 V 17 29.065 3 0.565 0.565 29.981 0.000 0.000 LGA A 18 A 18 32.336 1 0.066 0.066 32.336 0.000 0.000 LGA E 19 E 19 29.785 5 0.591 0.591 30.459 0.000 0.000 LGA E 20 E 20 27.296 5 0.560 0.560 29.178 0.000 0.000 LGA C 21 C 21 30.699 2 0.595 0.595 31.447 0.000 0.000 LGA S 22 S 22 33.023 2 0.608 0.608 33.023 0.000 0.000 LGA P 23 P 23 32.365 3 0.573 0.573 33.989 0.000 0.000 LGA C 24 C 24 36.344 2 0.616 0.616 39.912 0.000 0.000 LGA S 25 S 25 42.915 2 0.584 0.584 43.263 0.000 0.000 LGA N 26 N 26 43.778 4 0.091 0.091 43.778 0.000 0.000 LGA F 27 F 27 42.523 7 0.191 0.191 42.799 0.000 0.000 LGA R 28 R 28 42.317 7 0.072 0.072 42.487 0.000 0.000 LGA A 29 A 29 43.208 1 0.032 0.032 44.291 0.000 0.000 LGA K 30 K 30 44.570 5 0.109 0.109 45.356 0.000 0.000 LGA G 39 G 39 1.578 0 0.651 0.651 2.562 71.071 71.071 LGA Y 40 Y 40 2.356 8 0.175 0.175 3.947 61.429 20.476 LGA V 41 V 41 2.291 3 0.029 0.029 2.544 71.190 40.680 LGA E 42 E 42 2.989 5 0.170 0.170 3.337 59.286 26.349 LGA K 43 K 43 1.389 5 0.259 0.259 2.858 75.357 33.492 LGA I 44 I 44 2.976 4 0.070 0.070 3.460 61.190 30.595 LGA T 45 T 45 1.832 3 0.033 0.033 2.669 73.214 41.837 LGA C 46 C 46 2.518 2 0.140 0.140 3.287 63.333 42.222 LGA S 47 S 47 2.931 2 0.198 0.198 3.564 59.524 39.683 LGA S 48 S 48 4.933 2 0.243 0.243 6.815 28.571 19.048 LGA S 49 S 49 0.906 2 0.608 0.608 3.242 73.690 49.127 LGA K 50 K 50 1.707 5 0.332 0.332 2.596 68.929 30.635 LGA R 51 R 51 2.006 7 0.132 0.132 2.006 72.976 26.537 LGA N 52 N 52 2.418 4 0.041 0.041 3.718 55.595 27.798 LGA E 53 E 53 3.085 5 0.085 0.085 3.085 59.167 26.296 LGA F 54 F 54 2.831 7 0.036 0.036 3.767 50.119 18.225 LGA K 55 K 55 3.528 5 0.155 0.155 3.528 51.905 23.069 LGA S 56 S 56 2.652 2 0.108 0.108 4.353 48.571 32.381 LGA C 57 C 57 4.617 2 0.632 0.632 4.617 43.690 29.127 LGA R 58 R 58 2.110 7 0.559 0.559 3.255 59.167 21.515 LGA S 59 S 59 5.175 2 0.625 0.625 5.175 36.190 24.127 LGA A 60 A 60 6.471 1 0.013 0.013 7.078 16.429 13.143 LGA L 61 L 61 6.918 4 0.055 0.055 6.918 16.310 8.155 LGA M 62 M 62 4.355 4 0.076 0.076 4.744 35.714 17.857 LGA E 63 E 63 3.849 5 0.559 0.559 3.849 48.452 21.534 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 50 200 200 100.00 399 200 50.13 58 SUMMARY(RMSD_GDC): 18.313 18.223 18.223 23.467 12.672 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 50 58 4.0 20 2.70 25.862 25.175 0.715 LGA_LOCAL RMSD: 2.697 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 24.258 Number of assigned atoms: 50 Std_ASGN_ATOMS RMSD: 18.313 Standard rmsd on all 50 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.675358 * X + -0.014420 * Y + -0.737349 * Z + 97.929138 Y_new = -0.431459 * X + 0.818577 * Y + 0.379177 * Z + -1.764580 Z_new = 0.598109 * X + 0.574216 * Y + -0.559054 * Z + -24.028561 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.573088 -0.641140 2.342816 [DEG: -147.4271 -36.7346 134.2335 ] ZXZ: -2.045774 2.164040 0.805776 [DEG: -117.2142 123.9904 46.1676 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0531AL396_1-D1 REMARK 2: T0531-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0531AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 50 58 4.0 20 2.70 25.175 18.31 REMARK ---------------------------------------------------------- MOLECULE T0531AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2wjv_D ATOM 9 N GLU 6 10.837 -4.493 -26.499 1.00 0.00 N ATOM 10 CA GLU 6 11.992 -5.297 -26.086 1.00 0.00 C ATOM 11 C GLU 6 12.675 -5.941 -27.279 1.00 0.00 C ATOM 12 O GLU 6 13.145 -5.244 -28.196 1.00 0.00 O ATOM 13 N PHE 7 12.746 -7.273 -27.261 1.00 0.00 N ATOM 14 CA PHE 7 13.121 -8.056 -28.448 1.00 0.00 C ATOM 15 C PHE 7 11.925 -8.978 -28.756 1.00 0.00 C ATOM 16 O PHE 7 12.000 -10.191 -28.522 1.00 0.00 O ATOM 17 N PRO 8 10.819 -8.393 -29.287 1.00 0.00 N ATOM 18 CA PRO 8 9.480 -9.017 -29.388 1.00 0.00 C ATOM 19 C PRO 8 9.360 -10.115 -30.461 1.00 0.00 C ATOM 20 O PRO 8 9.582 -9.852 -31.650 1.00 0.00 O ATOM 21 N CYS 9 8.974 -11.321 -30.047 1.00 0.00 N ATOM 22 CA CYS 9 8.937 -12.469 -30.954 1.00 0.00 C ATOM 23 C CYS 9 7.533 -12.749 -31.511 1.00 0.00 C ATOM 24 O CYS 9 6.558 -12.085 -31.151 1.00 0.00 O ATOM 25 N TRP 10 7.453 -13.733 -32.406 1.00 0.00 N ATOM 26 CA TRP 10 6.175 -14.269 -32.883 1.00 0.00 C ATOM 27 C TRP 10 5.511 -15.104 -31.787 1.00 0.00 C ATOM 28 O TRP 10 4.321 -15.394 -31.867 1.00 0.00 O ATOM 29 N LEU 11 6.281 -15.488 -30.768 1.00 0.00 N ATOM 30 CA LEU 11 5.739 -16.227 -29.620 1.00 0.00 C ATOM 31 C LEU 11 5.326 -15.311 -28.469 1.00 0.00 C ATOM 32 O LEU 11 4.823 -15.790 -27.449 1.00 0.00 O ATOM 33 N VAL 12 5.533 -14.007 -28.619 1.00 0.00 N ATOM 34 CA VAL 12 4.917 -13.049 -27.703 1.00 0.00 C ATOM 35 C VAL 12 3.450 -12.909 -28.042 1.00 0.00 C ATOM 36 O VAL 12 2.612 -12.858 -27.152 1.00 0.00 O ATOM 37 N GLU 13 3.149 -12.851 -29.335 1.00 0.00 N ATOM 38 CA GLU 13 1.776 -12.813 -29.794 1.00 0.00 C ATOM 39 C GLU 13 1.022 -14.008 -29.261 1.00 0.00 C ATOM 40 O GLU 13 -0.077 -13.855 -28.738 1.00 0.00 O ATOM 41 N GLU 14 1.616 -15.193 -29.380 1.00 0.00 N ATOM 42 CA GLU 14 0.969 -16.435 -28.935 1.00 0.00 C ATOM 43 C GLU 14 0.644 -16.422 -27.436 1.00 0.00 C ATOM 44 O GLU 14 -0.463 -16.767 -27.027 1.00 0.00 O ATOM 45 N PHE 15 1.615 -16.019 -26.629 1.00 0.00 N ATOM 46 CA PHE 15 1.407 -15.839 -25.200 1.00 0.00 C ATOM 47 C PHE 15 0.269 -14.841 -24.906 1.00 0.00 C ATOM 48 O PHE 15 -0.627 -15.144 -24.098 1.00 0.00 O ATOM 49 N VAL 16 0.282 -13.671 -25.555 1.00 0.00 N ATOM 50 CA VAL 16 -0.734 -12.659 -25.259 1.00 0.00 C ATOM 51 C VAL 16 -2.102 -13.271 -25.512 1.00 0.00 C ATOM 52 O VAL 16 -3.014 -13.160 -24.684 1.00 0.00 O ATOM 53 N VAL 17 -2.218 -13.951 -26.647 1.00 0.00 N ATOM 54 CA VAL 17 -3.454 -14.603 -27.004 1.00 0.00 C ATOM 55 C VAL 17 -3.743 -15.765 -26.059 1.00 0.00 C ATOM 56 O VAL 17 -4.884 -15.993 -25.694 1.00 0.00 O ATOM 57 N ALA 18 -2.700 -16.483 -25.652 1.00 0.00 N ATOM 58 CA ALA 18 -2.845 -17.606 -24.723 1.00 0.00 C ATOM 59 C ALA 18 -3.300 -17.126 -23.356 1.00 0.00 C ATOM 60 O ALA 18 -4.124 -17.760 -22.722 1.00 0.00 O ATOM 61 N GLU 19 -2.767 -15.999 -22.909 1.00 0.00 N ATOM 62 CA GLU 19 -3.109 -15.486 -21.593 1.00 0.00 C ATOM 63 C GLU 19 -4.568 -14.996 -21.562 1.00 0.00 C ATOM 64 O GLU 19 -5.301 -15.299 -20.628 1.00 0.00 O ATOM 65 N GLU 20 -4.985 -14.243 -22.575 1.00 0.00 N ATOM 66 CA GLU 20 -6.360 -13.735 -22.623 1.00 0.00 C ATOM 67 C GLU 20 -7.330 -14.894 -22.493 1.00 0.00 C ATOM 68 O GLU 20 -8.236 -14.882 -21.657 1.00 0.00 O ATOM 69 N CYS 21 -7.117 -15.897 -23.339 1.00 0.00 N ATOM 70 CA CYS 21 -7.991 -17.054 -23.414 1.00 0.00 C ATOM 71 C CYS 21 -8.030 -17.744 -22.064 1.00 0.00 C ATOM 72 O CYS 21 -9.094 -18.147 -21.595 1.00 0.00 O ATOM 73 N SER 22 -6.867 -17.850 -21.432 1.00 0.00 N ATOM 74 CA SER 22 -6.768 -18.537 -20.166 1.00 0.00 C ATOM 75 C SER 22 -7.631 -17.892 -19.073 1.00 0.00 C ATOM 76 O SER 22 -8.224 -18.604 -18.274 1.00 0.00 O ATOM 77 N PRO 23 -7.734 -16.568 -19.049 1.00 0.00 N ATOM 78 CA PRO 23 -8.590 -15.898 -18.056 1.00 0.00 C ATOM 79 C PRO 23 -10.100 -16.029 -18.411 1.00 0.00 C ATOM 80 O PRO 23 -10.959 -16.384 -17.576 1.00 0.00 O ATOM 81 N CYS 24 -10.392 -15.728 -19.669 1.00 0.00 N ATOM 82 CA CYS 24 -11.709 -15.925 -20.288 1.00 0.00 C ATOM 83 C CYS 24 -12.226 -17.360 -20.088 1.00 0.00 C ATOM 84 O CYS 24 -13.424 -17.583 -19.894 1.00 0.00 O ATOM 85 N SER 25 -11.304 -18.321 -20.138 1.00 0.00 N ATOM 86 CA SER 25 -11.645 -19.748 -20.099 1.00 0.00 C ATOM 87 C SER 25 -11.926 -20.246 -18.687 1.00 0.00 C ATOM 88 O SER 25 -12.827 -21.060 -18.484 1.00 0.00 O ATOM 89 N ASN 26 -11.169 -19.753 -17.715 1.00 0.00 N ATOM 90 CA ASN 26 -11.250 -20.304 -16.370 1.00 0.00 C ATOM 91 C ASN 26 -12.462 -19.841 -15.554 1.00 0.00 C ATOM 92 O ASN 26 -12.844 -20.496 -14.569 1.00 0.00 O ATOM 93 N PHE 27 -13.072 -18.733 -15.979 1.00 0.00 N ATOM 94 CA PHE 27 -14.276 -18.196 -15.325 1.00 0.00 C ATOM 95 C PHE 27 -15.533 -18.972 -15.710 1.00 0.00 C ATOM 96 O PHE 27 -16.137 -19.649 -14.875 1.00 0.00 O ATOM 97 N ARG 28 -15.880 -18.885 -16.993 1.00 0.00 N ATOM 98 CA ARG 28 -17.167 -19.342 -17.545 1.00 0.00 C ATOM 99 C ARG 28 -17.767 -20.599 -16.917 1.00 0.00 C ATOM 100 O ARG 28 -19.006 -20.711 -16.793 1.00 0.00 O ATOM 101 N ALA 29 -16.895 -21.537 -16.529 1.00 0.00 N ATOM 102 CA ALA 29 -17.336 -22.773 -15.857 1.00 0.00 C ATOM 103 C ALA 29 -18.201 -22.492 -14.609 1.00 0.00 C ATOM 104 O ALA 29 -19.140 -23.238 -14.305 1.00 0.00 O ATOM 105 N LYS 30 -17.864 -21.403 -13.912 1.00 0.00 N ATOM 106 CA LYS 30 -18.528 -20.990 -12.681 1.00 0.00 C ATOM 107 C LYS 30 -19.570 -19.921 -13.002 1.00 0.00 C ATOM 108 O LYS 30 -20.683 -19.940 -12.479 1.00 0.00 O ATOM 109 N GLY 39 4.400 8.282 -5.902 1.00 0.00 N ATOM 110 CA GLY 39 3.530 8.585 -4.769 1.00 0.00 C ATOM 111 C GLY 39 2.420 7.538 -4.673 1.00 0.00 C ATOM 112 O GLY 39 1.916 7.052 -5.691 1.00 0.00 O ATOM 113 N TYR 40 2.037 7.215 -3.439 1.00 0.00 N ATOM 114 CA TYR 40 1.299 5.988 -3.140 1.00 0.00 C ATOM 115 C TYR 40 0.161 6.202 -2.159 1.00 0.00 C ATOM 116 O TYR 40 -0.020 7.291 -1.631 1.00 0.00 O ATOM 117 N VAL 41 -0.610 5.144 -1.936 1.00 0.00 N ATOM 118 CA VAL 41 -1.659 5.138 -0.933 1.00 0.00 C ATOM 119 C VAL 41 -1.709 3.773 -0.241 1.00 0.00 C ATOM 120 O VAL 41 -1.747 2.740 -0.915 1.00 0.00 O ATOM 121 N GLU 42 -1.719 3.763 1.107 1.00 0.00 N ATOM 122 CA GLU 42 -1.827 2.509 1.851 1.00 0.00 C ATOM 123 C GLU 42 -3.246 1.909 1.880 1.00 0.00 C ATOM 124 O GLU 42 -4.222 2.622 2.121 1.00 0.00 O ATOM 125 N LYS 43 -3.327 0.600 1.624 1.00 0.00 N ATOM 126 CA LYS 43 -4.543 -0.195 1.819 1.00 0.00 C ATOM 127 C LYS 43 -4.212 -1.395 2.706 1.00 0.00 C ATOM 128 O LYS 43 -3.069 -1.850 2.732 1.00 0.00 O ATOM 129 N ILE 44 -5.214 -1.903 3.416 1.00 0.00 N ATOM 130 CA ILE 44 -5.079 -3.112 4.229 1.00 0.00 C ATOM 131 C ILE 44 -5.530 -4.325 3.427 1.00 0.00 C ATOM 132 O ILE 44 -6.464 -4.238 2.639 1.00 0.00 O ATOM 133 N THR 45 -4.869 -5.459 3.636 1.00 0.00 N ATOM 134 CA THR 45 -5.214 -6.700 2.943 1.00 0.00 C ATOM 135 C THR 45 -5.460 -7.822 3.955 1.00 0.00 C ATOM 136 O THR 45 -4.692 -7.983 4.906 1.00 0.00 O ATOM 137 N CYS 46 -6.520 -8.598 3.735 1.00 0.00 N ATOM 138 CA CYS 46 -6.877 -9.704 4.627 1.00 0.00 C ATOM 139 C CYS 46 -6.093 -10.978 4.268 1.00 0.00 C ATOM 140 O CYS 46 -5.709 -11.166 3.117 1.00 0.00 O ATOM 141 N SER 47 -5.851 -11.835 5.265 1.00 0.00 N ATOM 142 CA SER 47 -4.928 -12.982 5.137 1.00 0.00 C ATOM 143 C SER 47 -5.141 -14.004 6.262 1.00 0.00 C ATOM 144 O SER 47 -4.348 -14.937 6.444 1.00 0.00 O ATOM 145 N SER 48 -6.232 -15.369 11.749 1.00 0.00 N ATOM 146 CA SER 48 -6.404 -14.262 10.816 1.00 0.00 C ATOM 147 C SER 48 -5.216 -13.319 10.886 1.00 0.00 C ATOM 148 O SER 48 -4.485 -13.311 11.874 1.00 0.00 O ATOM 149 N SER 49 -5.025 -12.531 9.830 1.00 0.00 N ATOM 150 CA SER 49 -3.988 -11.499 9.814 1.00 0.00 C ATOM 151 C SER 49 -4.242 -10.443 8.761 1.00 0.00 C ATOM 152 O SER 49 -4.749 -10.746 7.689 1.00 0.00 O ATOM 153 N LYS 50 -3.855 -9.211 9.076 1.00 0.00 N ATOM 154 CA LYS 50 -3.923 -8.090 8.141 1.00 0.00 C ATOM 155 C LYS 50 -2.515 -7.737 7.671 1.00 0.00 C ATOM 156 O LYS 50 -1.564 -7.855 8.440 1.00 0.00 O ATOM 157 N ARG 51 -2.386 -7.301 6.420 1.00 0.00 N ATOM 158 CA ARG 51 -1.123 -6.739 5.927 1.00 0.00 C ATOM 159 C ARG 51 -1.370 -5.537 5.020 1.00 0.00 C ATOM 160 O ARG 51 -2.433 -5.416 4.418 1.00 0.00 O ATOM 161 N ASN 52 -0.381 -4.647 4.949 1.00 0.00 N ATOM 162 CA ASN 52 -0.547 -3.358 4.285 1.00 0.00 C ATOM 163 C ASN 52 0.156 -3.311 2.928 1.00 0.00 C ATOM 164 O ASN 52 1.333 -3.646 2.807 1.00 0.00 O ATOM 165 N GLU 53 -0.600 -2.895 1.914 1.00 0.00 N ATOM 166 CA GLU 53 -0.091 -2.714 0.567 1.00 0.00 C ATOM 167 C GLU 53 -0.103 -1.229 0.205 1.00 0.00 C ATOM 168 O GLU 53 -1.053 -0.507 0.527 1.00 0.00 O ATOM 169 N PHE 54 0.940 -0.792 -0.492 1.00 0.00 N ATOM 170 CA PHE 54 1.017 0.564 -1.017 1.00 0.00 C ATOM 171 C PHE 54 0.471 0.618 -2.436 1.00 0.00 C ATOM 172 O PHE 54 1.145 0.183 -3.375 1.00 0.00 O ATOM 173 N LYS 55 -0.751 1.134 -2.584 1.00 0.00 N ATOM 174 CA LYS 55 -1.404 1.240 -3.888 1.00 0.00 C ATOM 175 C LYS 55 -1.014 2.576 -4.506 1.00 0.00 C ATOM 176 O LYS 55 -1.055 3.591 -3.817 1.00 0.00 O ATOM 177 N SER 56 -0.623 2.589 -5.798 1.00 0.00 N ATOM 178 CA SER 56 -0.129 3.835 -6.392 1.00 0.00 C ATOM 179 C SER 56 -1.267 4.741 -6.809 1.00 0.00 C ATOM 180 O SER 56 -2.404 4.272 -6.926 1.00 0.00 O ATOM 181 N CYS 57 -0.964 6.023 -7.029 1.00 0.00 N ATOM 182 CA CYS 57 -1.985 7.007 -7.439 1.00 0.00 C ATOM 183 C CYS 57 -2.401 6.796 -8.898 1.00 0.00 C ATOM 184 O CYS 57 -3.539 7.104 -9.275 1.00 0.00 O ATOM 185 N ARG 58 -1.465 6.281 -9.702 1.00 0.00 N ATOM 186 CA ARG 58 -1.752 5.734 -11.033 1.00 0.00 C ATOM 187 C ARG 58 -3.057 4.920 -11.061 1.00 0.00 C ATOM 188 O ARG 58 -3.991 5.259 -11.786 1.00 0.00 O ATOM 189 N SER 59 -3.116 3.867 -10.246 1.00 0.00 N ATOM 190 CA SER 59 -4.196 2.875 -10.304 1.00 0.00 C ATOM 191 C SER 59 -5.599 3.460 -10.180 1.00 0.00 C ATOM 192 O SER 59 -5.784 4.528 -9.607 1.00 0.00 O ATOM 193 N ALA 60 -6.578 2.717 -10.692 1.00 0.00 N ATOM 194 CA ALA 60 -7.994 3.117 -10.651 1.00 0.00 C ATOM 195 C ALA 60 -8.584 3.000 -9.248 1.00 0.00 C ATOM 196 O ALA 60 -9.631 3.590 -8.964 1.00 0.00 O ATOM 197 N LEU 61 -7.940 2.199 -8.397 1.00 0.00 N ATOM 198 CA LEU 61 -8.386 2.027 -7.023 1.00 0.00 C ATOM 199 C LEU 61 -8.002 3.251 -6.196 1.00 0.00 C ATOM 200 O LEU 61 -8.794 3.733 -5.381 1.00 0.00 O ATOM 201 N MET 62 -6.782 3.748 -6.415 1.00 0.00 N ATOM 202 CA MET 62 -6.356 5.024 -5.850 1.00 0.00 C ATOM 203 C MET 62 -7.055 6.156 -6.597 1.00 0.00 C ATOM 204 O MET 62 -7.836 6.885 -6.004 1.00 0.00 O ATOM 205 N GLU 63 -6.806 6.265 -7.905 1.00 0.00 N ATOM 206 CA GLU 63 -7.390 7.322 -8.770 1.00 0.00 C ATOM 207 C GLU 63 -8.868 7.632 -8.508 1.00 0.00 C ATOM 208 O GLU 63 -9.319 8.755 -8.734 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 200 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 79.68 50.0 96 84.2 114 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC BURIED . . . . . . . . 79.68 50.0 96 84.2 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 49 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 18.31 (Number of atoms: 50) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 18.31 50 86.2 58 CRMSCA CRN = ALL/NP . . . . . 0.3663 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSCA BURIED . . . . . . . . 18.31 50 86.2 58 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 18.23 200 69.4 288 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSMC BURIED . . . . . . . . 18.23 200 69.4 288 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 785 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 769 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 785 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 18.23 200 19.7 1017 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSALL BURIED . . . . . . . . 18.23 200 19.7 1017 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.137 1.000 0.500 50 86.2 58 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA BURIED . . . . . . . . 17.137 1.000 0.500 50 86.2 58 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.067 1.000 0.500 200 69.4 288 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC BURIED . . . . . . . . 17.067 1.000 0.500 200 69.4 288 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 785 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 769 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 785 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 17.067 1.000 0.500 200 19.7 1017 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL BURIED . . . . . . . . 17.067 1.000 0.500 200 19.7 1017 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 9 50 58 DISTCA CA (P) 0.00 0.00 0.00 0.00 15.52 58 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.15 DISTCA ALL (N) 0 0 0 0 39 200 1017 DISTALL ALL (P) 0.00 0.00 0.00 0.00 3.83 1017 DISTALL ALL (RMS) 0.00 0.00 0.00 0.00 8.25 DISTALL END of the results output