####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 58 ( 232), selected 58 , name T0531AL285_1-D1 # Molecule2: number of CA atoms 58 ( 1017), selected 58 , name T0531-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0531AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 32 - 60 4.95 18.63 LONGEST_CONTINUOUS_SEGMENT: 29 33 - 61 4.88 18.82 LCS_AVERAGE: 41.50 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 41 - 53 1.99 19.81 LCS_AVERAGE: 14.36 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 8 - 13 0.62 29.57 LONGEST_CONTINUOUS_SEGMENT: 6 41 - 46 0.87 19.86 LCS_AVERAGE: 7.58 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 58 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT E 6 E 6 3 4 18 0 3 4 5 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT F 7 F 7 3 7 18 0 3 4 5 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT P 8 P 8 6 7 18 4 6 6 6 6 7 10 11 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT C 9 C 9 6 7 18 4 6 6 6 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT W 10 W 10 6 7 18 4 6 6 6 6 7 9 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT L 11 L 11 6 7 18 4 6 6 6 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 23 LCS_GDT V 12 V 12 6 7 18 4 6 6 6 6 7 10 12 14 14 15 15 16 16 17 18 20 22 27 28 LCS_GDT E 13 E 13 6 7 18 4 6 6 6 6 7 9 12 13 14 15 15 16 16 16 18 20 22 23 24 LCS_GDT E 14 E 14 3 6 18 0 3 4 5 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 23 LCS_GDT F 15 F 15 3 6 18 1 3 3 5 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 23 LCS_GDT V 16 V 16 4 6 18 3 4 4 5 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 23 LCS_GDT V 17 V 17 4 6 18 3 4 4 5 6 8 10 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT A 18 A 18 4 7 18 3 4 4 5 6 7 10 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT E 19 E 19 4 9 18 3 4 6 8 9 9 10 12 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT E 20 E 20 4 9 18 3 4 5 8 9 9 10 10 14 14 15 15 16 16 17 18 19 20 21 22 LCS_GDT C 21 C 21 4 9 18 3 4 6 8 9 9 10 10 11 13 15 15 16 16 17 18 19 20 21 22 LCS_GDT S 22 S 22 4 9 18 3 4 5 8 9 9 10 10 10 11 12 13 15 16 17 18 19 21 23 24 LCS_GDT P 23 P 23 4 9 18 3 4 6 8 9 9 10 10 10 11 12 13 15 16 17 18 19 20 23 24 LCS_GDT C 24 C 24 4 9 15 3 4 5 6 9 9 10 10 10 11 12 13 15 16 17 18 19 21 23 24 LCS_GDT S 25 S 25 4 9 18 3 4 6 8 9 9 10 10 10 11 13 15 17 19 21 23 23 24 25 28 LCS_GDT N 26 N 26 4 9 18 3 4 6 8 9 9 10 11 12 13 15 16 18 19 21 23 23 24 25 28 LCS_GDT F 27 F 27 3 9 18 1 3 6 8 9 9 10 11 12 13 15 17 19 20 24 25 28 30 31 31 LCS_GDT R 28 R 28 3 4 18 3 4 5 6 8 9 10 11 12 13 15 17 19 22 24 25 28 30 31 31 LCS_GDT A 29 A 29 3 4 18 3 3 3 4 4 5 5 6 9 13 16 17 19 22 24 25 28 30 31 31 LCS_GDT K 30 K 30 3 4 18 3 3 4 4 5 7 8 10 12 18 19 21 23 24 25 27 28 30 31 31 LCS_GDT T 31 T 31 3 8 28 3 3 4 5 6 7 9 11 17 18 18 20 23 24 25 27 28 30 31 31 LCS_GDT T 32 T 32 5 8 29 3 5 6 7 8 9 10 11 19 22 22 23 23 24 27 27 28 30 31 31 LCS_GDT P 33 P 33 5 8 29 4 5 6 7 11 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT E 34 E 34 5 8 29 4 5 6 7 9 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT C 35 C 35 5 8 29 4 5 6 7 10 13 16 18 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT G 36 G 36 5 8 29 4 5 6 7 8 9 12 15 20 21 23 25 26 27 28 29 29 30 31 31 LCS_GDT P 37 P 37 5 8 29 3 4 5 7 8 9 10 14 18 21 22 25 26 27 28 29 29 30 31 31 LCS_GDT T 38 T 38 5 8 29 3 5 6 7 8 9 10 13 15 19 22 25 26 27 28 29 29 30 31 31 LCS_GDT G 39 G 39 3 5 29 3 4 4 4 5 7 10 12 14 16 19 22 26 26 27 29 29 30 31 31 LCS_GDT Y 40 Y 40 3 6 29 3 3 4 5 6 9 13 16 20 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT V 41 V 41 6 13 29 5 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT E 42 E 42 6 13 29 5 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT K 43 K 43 6 13 29 5 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT I 44 I 44 6 13 29 4 6 8 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT T 45 T 45 6 13 29 5 6 8 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT C 46 C 46 6 13 29 4 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT S 47 S 47 5 13 29 4 5 6 9 11 15 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT S 48 S 48 5 13 29 3 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT S 49 S 49 4 13 29 3 3 4 7 9 14 17 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT K 50 K 50 3 13 29 3 4 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT R 51 R 51 5 13 29 4 5 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT N 52 N 52 5 13 29 4 5 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT E 53 E 53 5 13 29 5 6 8 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT F 54 F 54 5 8 29 4 5 7 10 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT K 55 K 55 5 8 29 4 4 7 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT S 56 S 56 4 8 29 4 4 8 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT C 57 C 57 4 8 29 4 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 LCS_GDT R 58 R 58 4 7 29 3 5 6 9 13 16 19 20 21 22 23 25 26 27 28 29 29 30 30 30 LCS_GDT S 59 S 59 4 7 29 3 3 6 6 7 9 11 16 18 20 23 24 25 27 28 29 29 30 30 30 LCS_GDT A 60 A 60 4 4 29 3 3 4 4 4 6 8 12 16 20 22 24 25 27 28 29 29 30 30 30 LCS_GDT L 61 L 61 3 4 29 3 3 4 4 7 9 10 12 16 20 22 23 25 26 28 29 29 30 30 30 LCS_GDT M 62 M 62 3 4 28 3 3 4 4 7 9 10 12 13 14 18 22 23 26 26 28 29 30 30 30 LCS_GDT E 63 E 63 3 4 23 0 3 4 4 4 5 6 12 13 13 15 16 18 24 25 26 27 28 29 30 LCS_AVERAGE LCS_A: 21.15 ( 7.58 14.36 41.50 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 9 13 15 16 19 20 21 22 23 25 26 27 28 29 29 30 31 31 GDT PERCENT_AT 8.62 10.34 15.52 22.41 25.86 27.59 32.76 34.48 36.21 37.93 39.66 43.10 44.83 46.55 48.28 50.00 50.00 51.72 53.45 53.45 GDT RMS_LOCAL 0.32 0.38 1.14 1.41 1.62 1.80 2.25 2.39 2.68 2.99 3.26 3.78 4.06 4.43 4.68 4.88 4.88 5.21 6.29 6.29 GDT RMS_ALL_AT 19.67 19.72 19.53 19.48 19.42 19.36 19.06 19.12 18.91 18.76 18.97 19.09 19.09 18.81 18.80 18.82 18.82 18.79 19.14 19.14 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA E 6 E 6 26.238 5 0.637 0.637 26.238 0.000 0.000 LGA F 7 F 7 23.594 7 0.695 0.695 24.730 0.000 0.000 LGA P 8 P 8 22.229 3 0.485 0.485 22.364 0.000 0.000 LGA C 9 C 9 21.156 2 0.077 0.077 21.789 0.000 0.000 LGA W 10 W 10 23.036 10 0.144 0.144 23.036 0.000 0.000 LGA L 11 L 11 20.247 4 0.122 0.122 21.139 0.000 0.000 LGA V 12 V 12 18.351 3 0.199 0.199 19.252 0.000 0.000 LGA E 13 E 13 19.921 5 0.599 0.599 21.608 0.000 0.000 LGA E 14 E 14 23.985 5 0.570 0.570 24.310 0.000 0.000 LGA F 15 F 15 26.092 7 0.591 0.591 26.548 0.000 0.000 LGA V 16 V 16 26.914 3 0.509 0.509 28.263 0.000 0.000 LGA V 17 V 17 31.489 3 0.363 0.363 36.020 0.000 0.000 LGA A 18 A 18 35.967 1 0.630 0.630 36.709 0.000 0.000 LGA E 19 E 19 37.993 5 0.599 0.599 37.993 0.000 0.000 LGA E 20 E 20 36.857 5 0.017 0.017 37.288 0.000 0.000 LGA C 21 C 21 34.005 2 0.111 0.111 35.099 0.000 0.000 LGA S 22 S 22 33.390 2 0.130 0.130 33.390 0.000 0.000 LGA P 23 P 23 34.742 3 0.604 0.604 34.742 0.000 0.000 LGA C 24 C 24 30.734 2 0.144 0.144 31.970 0.000 0.000 LGA S 25 S 25 30.713 2 0.154 0.154 30.724 0.000 0.000 LGA N 26 N 26 28.683 4 0.624 0.624 29.498 0.000 0.000 LGA F 27 F 27 25.319 7 0.663 0.663 26.860 0.000 0.000 LGA R 28 R 28 20.088 7 0.611 0.611 22.053 0.000 0.000 LGA A 29 A 29 17.880 1 0.505 0.505 19.083 0.000 0.000 LGA K 30 K 30 15.268 5 0.688 0.688 16.325 0.000 0.000 LGA T 31 T 31 12.681 3 0.612 0.612 13.540 0.357 0.204 LGA T 32 T 32 8.385 3 0.594 0.594 10.113 13.095 7.483 LGA P 33 P 33 2.729 3 0.090 0.090 4.759 56.548 32.313 LGA E 34 E 34 3.422 5 0.120 0.120 3.820 51.905 23.069 LGA C 35 C 35 6.588 2 0.361 0.361 8.523 15.238 10.159 LGA G 36 G 36 8.008 0 0.058 0.058 10.999 6.190 6.190 LGA P 37 P 37 9.020 3 0.151 0.151 10.750 2.500 1.429 LGA T 38 T 38 9.035 3 0.020 0.020 11.025 1.548 0.884 LGA G 39 G 39 10.779 0 0.053 0.053 10.779 0.238 0.238 LGA Y 40 Y 40 7.429 8 0.552 0.552 8.301 14.524 4.841 LGA V 41 V 41 1.755 3 0.320 0.320 3.611 63.452 36.259 LGA E 42 E 42 1.329 5 0.238 0.238 2.066 77.262 34.339 LGA K 43 K 43 1.151 5 0.156 0.156 1.376 81.429 36.190 LGA I 44 I 44 1.940 4 0.142 0.142 1.940 72.857 36.429 LGA T 45 T 45 1.420 3 0.034 0.034 1.508 88.571 50.612 LGA C 46 C 46 1.058 2 0.138 0.138 1.698 81.548 54.365 LGA S 47 S 47 3.462 2 0.052 0.052 3.462 55.476 36.984 LGA S 48 S 48 0.450 2 0.470 0.470 3.094 76.071 50.714 LGA S 49 S 49 3.887 2 0.036 0.036 3.887 55.595 37.063 LGA K 50 K 50 2.395 5 0.337 0.337 3.126 67.500 30.000 LGA R 51 R 51 2.463 7 0.216 0.216 3.252 59.167 21.515 LGA N 52 N 52 2.206 4 0.026 0.026 2.305 75.357 37.679 LGA E 53 E 53 1.731 5 0.034 0.034 2.071 72.976 32.434 LGA F 54 F 54 3.009 7 0.197 0.197 3.933 50.119 18.225 LGA K 55 K 55 3.194 5 0.170 0.170 3.194 55.357 24.603 LGA S 56 S 56 1.507 2 0.026 0.026 2.021 75.238 50.159 LGA C 57 C 57 1.442 2 0.599 0.599 2.087 86.548 57.698 LGA R 58 R 58 3.328 7 0.126 0.126 7.314 36.548 13.290 LGA S 59 S 59 9.997 2 0.638 0.638 12.506 2.619 1.746 LGA A 60 A 60 13.994 1 0.664 0.664 16.304 0.000 0.000 LGA L 61 L 61 16.856 4 0.621 0.621 19.888 0.000 0.000 LGA M 62 M 62 20.029 4 0.552 0.552 23.373 0.000 0.000 LGA E 63 E 63 26.851 5 0.180 0.180 28.398 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 58 232 232 100.00 453 232 51.21 58 SUMMARY(RMSD_GDC): 14.810 14.731 14.731 24.066 12.881 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 58 58 4.0 20 2.39 29.310 26.586 0.804 LGA_LOCAL RMSD: 2.386 Number of atoms: 20 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.120 Number of assigned atoms: 58 Std_ASGN_ATOMS RMSD: 14.810 Standard rmsd on all 58 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.133230 * X + -0.961601 * Y + -0.239942 * Z + -64.467171 Y_new = -0.866097 * X + -0.230656 * Y + 0.443478 * Z + 4.531097 Z_new = -0.481794 * X + 0.148729 * Y + -0.863571 * Z + -56.404884 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.418165 0.502700 2.971040 [DEG: -81.2549 28.8026 170.2281 ] ZXZ: -2.645649 2.613106 -1.271379 [DEG: -151.5845 149.7199 -72.8446 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0531AL285_1-D1 REMARK 2: T0531-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0531AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 58 58 4.0 20 2.39 26.586 14.81 REMARK ---------------------------------------------------------- MOLECULE T0531AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2e0mA ATOM 17 N GLU 6 10.448 -16.109 -21.972 1.00 0.00 N ATOM 18 CA GLU 6 9.953 -17.356 -21.392 1.00 0.00 C ATOM 19 C GLU 6 10.926 -18.008 -20.395 1.00 0.00 C ATOM 20 O GLU 6 10.501 -18.781 -19.543 1.00 0.00 O ATOM 21 N PHE 7 12.217 -17.682 -20.499 1.00 0.00 N ATOM 22 CA PHE 7 13.259 -18.225 -19.615 1.00 0.00 C ATOM 23 C PHE 7 13.505 -17.389 -18.367 1.00 0.00 C ATOM 24 O PHE 7 14.262 -17.788 -17.496 1.00 0.00 O ATOM 25 N PRO 8 12.889 -16.219 -18.300 1.00 0.00 N ATOM 26 CA PRO 8 13.131 -15.281 -17.220 1.00 0.00 C ATOM 27 C PRO 8 13.010 -15.919 -15.831 1.00 0.00 C ATOM 28 O PRO 8 13.933 -15.827 -15.038 1.00 0.00 O ATOM 29 N CYS 9 11.885 -16.578 -15.551 1.00 0.00 N ATOM 30 CA CYS 9 11.690 -17.179 -14.233 1.00 0.00 C ATOM 31 C CYS 9 12.710 -18.281 -13.943 1.00 0.00 C ATOM 32 O CYS 9 13.245 -18.354 -12.844 1.00 0.00 O ATOM 33 N TRP 10 12.991 -19.142 -14.910 1.00 0.00 N ATOM 34 CA TRP 10 14.044 -20.157 -14.708 1.00 0.00 C ATOM 35 C TRP 10 15.332 -19.520 -14.197 1.00 0.00 C ATOM 36 O TRP 10 15.944 -19.998 -13.234 1.00 0.00 O ATOM 37 N LEU 11 15.716 -18.422 -14.842 1.00 0.00 N ATOM 38 CA LEU 11 17.008 -17.788 -14.573 1.00 0.00 C ATOM 39 C LEU 11 16.954 -17.014 -13.271 1.00 0.00 C ATOM 40 O LEU 11 17.866 -17.113 -12.456 1.00 0.00 O ATOM 41 N VAL 12 15.891 -16.239 -13.093 1.00 0.00 N ATOM 42 CA VAL 12 15.748 -15.387 -11.909 1.00 0.00 C ATOM 43 C VAL 12 15.544 -16.141 -10.613 1.00 0.00 C ATOM 44 O VAL 12 16.121 -15.790 -9.588 1.00 0.00 O ATOM 45 N GLU 13 14.711 -17.175 -10.642 1.00 0.00 N ATOM 46 CA GLU 13 14.504 -17.982 -9.432 1.00 0.00 C ATOM 47 C GLU 13 15.824 -18.622 -8.976 1.00 0.00 C ATOM 48 O GLU 13 16.090 -18.690 -7.787 1.00 0.00 O ATOM 49 N GLU 14 18.293 -15.665 -7.668 1.00 0.00 N ATOM 50 CA GLU 14 17.848 -15.075 -6.409 1.00 0.00 C ATOM 51 C GLU 14 17.739 -16.076 -5.253 1.00 0.00 C ATOM 52 O GLU 14 17.185 -15.750 -4.206 1.00 0.00 O ATOM 53 N PHE 15 18.298 -17.269 -5.439 1.00 0.00 N ATOM 54 CA PHE 15 18.373 -18.273 -4.376 1.00 0.00 C ATOM 55 C PHE 15 16.996 -18.825 -3.973 1.00 0.00 C ATOM 56 O PHE 15 16.824 -19.295 -2.855 1.00 0.00 O ATOM 57 N VAL 16 16.018 -18.773 -4.873 1.00 0.00 N ATOM 58 CA VAL 16 14.681 -19.292 -4.533 1.00 0.00 C ATOM 59 C VAL 16 14.488 -20.723 -4.990 1.00 0.00 C ATOM 60 O VAL 16 13.376 -21.265 -4.989 1.00 0.00 O ATOM 61 N VAL 17 15.581 -21.335 -5.407 1.00 0.00 N ATOM 62 CA VAL 17 15.503 -22.726 -5.834 1.00 0.00 C ATOM 63 C VAL 17 16.552 -23.485 -5.023 1.00 0.00 C ATOM 64 O VAL 17 16.946 -24.587 -5.364 1.00 0.00 O ATOM 65 N ALA 18 16.996 -22.869 -3.921 1.00 0.00 N ATOM 66 CA ALA 18 17.943 -23.491 -2.977 1.00 0.00 C ATOM 67 C ALA 18 17.171 -24.158 -1.863 1.00 0.00 C ATOM 68 O ALA 18 16.372 -23.509 -1.154 1.00 0.00 O ATOM 69 N GLU 19 17.389 -25.455 -1.700 1.00 0.00 N ATOM 70 CA GLU 19 16.677 -26.225 -0.672 1.00 0.00 C ATOM 71 C GLU 19 15.396 -26.790 -1.211 1.00 0.00 C ATOM 72 O GLU 19 15.077 -27.974 -0.941 1.00 0.00 O ATOM 73 N GLU 20 14.680 -25.955 -1.954 1.00 0.00 N ATOM 74 CA GLU 20 13.445 -26.360 -2.637 1.00 0.00 C ATOM 75 C GLU 20 13.077 -25.351 -3.709 1.00 0.00 C ATOM 76 O GLU 20 13.561 -24.208 -3.700 1.00 0.00 O ATOM 77 N CYS 21 12.219 -25.794 -4.622 1.00 0.00 N ATOM 78 CA CYS 21 11.693 -24.915 -5.609 1.00 0.00 C ATOM 79 C CYS 21 10.634 -24.112 -4.894 1.00 0.00 C ATOM 80 O CYS 21 9.623 -24.671 -4.448 1.00 0.00 O ATOM 81 N SER 22 10.869 -22.811 -4.753 1.00 0.00 N ATOM 82 CA SER 22 9.800 -21.950 -4.282 1.00 0.00 C ATOM 83 C SER 22 8.690 -22.115 -5.320 1.00 0.00 C ATOM 84 O SER 22 8.953 -22.007 -6.516 1.00 0.00 O ATOM 85 N PRO 23 7.485 -22.473 -4.880 1.00 0.00 N ATOM 86 CA PRO 23 6.405 -22.821 -5.822 1.00 0.00 C ATOM 87 C PRO 23 5.927 -21.675 -6.712 1.00 0.00 C ATOM 88 O PRO 23 5.687 -21.877 -7.909 1.00 0.00 O ATOM 89 N CYS 24 5.747 -20.504 -6.125 1.00 0.00 N ATOM 90 CA CYS 24 5.257 -19.335 -6.879 1.00 0.00 C ATOM 91 C CYS 24 5.987 -18.111 -6.380 1.00 0.00 C ATOM 92 O CYS 24 6.392 -18.056 -5.217 1.00 0.00 O ATOM 93 N SER 25 6.223 -17.153 -7.267 1.00 0.00 N ATOM 94 CA SER 25 6.902 -15.929 -6.871 1.00 0.00 C ATOM 95 C SER 25 6.638 -14.830 -7.860 1.00 0.00 C ATOM 96 O SER 25 6.613 -15.074 -9.070 1.00 0.00 O ATOM 97 N ASN 26 6.495 -13.616 -7.341 1.00 0.00 N ATOM 98 CA ASN 26 6.291 -12.430 -8.169 1.00 0.00 C ATOM 99 C ASN 26 7.483 -11.486 -8.088 1.00 0.00 C ATOM 100 O ASN 26 7.935 -11.155 -6.996 1.00 0.00 O ATOM 101 N PHE 27 7.946 -11.012 -9.246 1.00 0.00 N ATOM 102 CA PHE 27 9.013 -10.011 -9.310 1.00 0.00 C ATOM 103 C PHE 27 8.386 -8.704 -9.793 1.00 0.00 C ATOM 104 O PHE 27 7.477 -8.728 -10.622 1.00 0.00 O ATOM 105 N ARG 28 8.902 -7.589 -9.300 1.00 0.00 N ATOM 106 CA ARG 28 8.354 -6.259 -9.640 1.00 0.00 C ATOM 107 C ARG 28 9.424 -5.499 -10.404 1.00 0.00 C ATOM 108 O ARG 28 10.534 -5.257 -9.896 1.00 0.00 O ATOM 109 N ALA 29 9.107 -5.140 -11.645 1.00 0.00 N ATOM 110 CA ALA 29 10.051 -4.391 -12.495 1.00 0.00 C ATOM 111 C ALA 29 9.803 -2.909 -12.360 1.00 0.00 C ATOM 112 O ALA 29 9.343 -2.279 -13.304 1.00 0.00 O ATOM 113 N LYS 30 10.091 -2.347 -11.192 1.00 0.00 N ATOM 114 CA LYS 30 9.960 -0.918 -10.978 1.00 0.00 C ATOM 115 C LYS 30 11.101 -0.477 -10.071 1.00 0.00 C ATOM 116 O LYS 30 11.725 -1.334 -9.412 1.00 0.00 O ATOM 117 N THR 31 11.379 0.823 -10.038 1.00 0.00 N ATOM 118 CA THR 31 12.375 1.347 -9.112 1.00 0.00 C ATOM 119 C THR 31 12.029 1.002 -7.660 1.00 0.00 C ATOM 120 O THR 31 10.863 1.022 -7.258 1.00 0.00 O ATOM 121 N THR 32 13.064 0.677 -6.885 1.00 0.00 N ATOM 122 CA THR 32 12.889 0.442 -5.467 1.00 0.00 C ATOM 123 C THR 32 12.064 1.545 -4.771 1.00 0.00 C ATOM 124 O THR 32 11.108 1.234 -4.044 1.00 0.00 O ATOM 125 N PRO 33 12.383 2.814 -5.022 1.00 0.00 N ATOM 126 CA PRO 33 11.654 3.899 -4.358 1.00 0.00 C ATOM 127 C PRO 33 10.154 3.853 -4.670 1.00 0.00 C ATOM 128 O PRO 33 9.319 4.143 -3.790 1.00 0.00 O ATOM 129 N GLU 34 9.802 3.480 -5.899 1.00 0.00 N ATOM 130 CA GLU 34 8.370 3.398 -6.261 1.00 0.00 C ATOM 131 C GLU 34 7.641 2.315 -5.478 1.00 0.00 C ATOM 132 O GLU 34 6.493 2.505 -5.073 1.00 0.00 O ATOM 133 N CYS 35 8.308 1.186 -5.270 1.00 0.00 N ATOM 134 CA CYS 35 7.744 0.107 -4.472 1.00 0.00 C ATOM 135 C CYS 35 7.681 0.474 -2.985 1.00 0.00 C ATOM 136 O CYS 35 6.645 0.284 -2.339 1.00 0.00 O ATOM 137 N GLY 36 8.766 1.029 -2.449 1.00 0.00 N ATOM 138 CA GLY 36 8.763 1.478 -1.054 1.00 0.00 C ATOM 139 C GLY 36 7.649 2.488 -0.798 1.00 0.00 C ATOM 140 O GLY 36 7.051 2.480 0.266 1.00 0.00 O ATOM 141 N PRO 37 7.359 3.336 -1.789 1.00 0.00 N ATOM 142 CA PRO 37 6.382 4.397 -1.595 1.00 0.00 C ATOM 143 C PRO 37 4.982 3.823 -1.471 1.00 0.00 C ATOM 144 O PRO 37 4.090 4.512 -0.973 1.00 0.00 O ATOM 145 N THR 38 4.819 2.562 -1.866 1.00 0.00 N ATOM 146 CA THR 38 3.498 1.914 -1.759 1.00 0.00 C ATOM 147 C THR 38 3.073 1.845 -0.287 1.00 0.00 C ATOM 148 O THR 38 1.878 1.873 0.004 1.00 0.00 O ATOM 149 N GLY 39 4.058 1.779 0.619 1.00 0.00 N ATOM 150 CA GLY 39 3.808 1.752 2.077 1.00 0.00 C ATOM 151 C GLY 39 3.063 2.985 2.581 1.00 0.00 C ATOM 152 O GLY 39 2.582 3.001 3.716 1.00 0.00 O ATOM 153 N TYR 40 2.989 4.010 1.734 1.00 0.00 N ATOM 154 CA TYR 40 2.353 5.277 2.061 1.00 0.00 C ATOM 155 C TYR 40 1.167 5.556 1.167 1.00 0.00 C ATOM 156 O TYR 40 0.644 6.684 1.139 1.00 0.00 O ATOM 157 N VAL 41 0.734 4.510 0.478 1.00 0.00 N ATOM 158 CA VAL 41 -0.385 4.618 -0.453 1.00 0.00 C ATOM 159 C VAL 41 -1.657 4.080 0.178 1.00 0.00 C ATOM 160 O VAL 41 -1.902 4.346 1.370 1.00 0.00 O ATOM 161 N GLU 42 -2.484 3.378 -0.589 1.00 0.00 N ATOM 162 CA GLU 42 -3.780 2.958 -0.034 1.00 0.00 C ATOM 163 C GLU 42 -3.664 1.787 0.932 1.00 0.00 C ATOM 164 O GLU 42 -3.267 0.709 0.521 1.00 0.00 O ATOM 165 N LYS 43 -4.099 1.974 2.179 1.00 0.00 N ATOM 166 CA LYS 43 -4.103 0.876 3.134 1.00 0.00 C ATOM 167 C LYS 43 -5.261 -0.080 2.817 1.00 0.00 C ATOM 168 O LYS 43 -6.415 0.342 2.657 1.00 0.00 O ATOM 169 N ILE 44 -4.933 -1.359 2.671 1.00 0.00 N ATOM 170 CA ILE 44 -5.929 -2.396 2.372 1.00 0.00 C ATOM 171 C ILE 44 -5.699 -3.584 3.286 1.00 0.00 C ATOM 172 O ILE 44 -4.642 -3.722 3.867 1.00 0.00 O ATOM 173 N THR 45 -6.707 -4.445 3.418 1.00 0.00 N ATOM 174 CA THR 45 -6.573 -5.618 4.270 1.00 0.00 C ATOM 175 C THR 45 -5.601 -6.635 3.661 1.00 0.00 C ATOM 176 O THR 45 -5.654 -6.905 2.468 1.00 0.00 O ATOM 177 N CYS 46 -4.710 -7.183 4.491 1.00 0.00 N ATOM 178 CA CYS 46 -3.831 -8.278 4.063 1.00 0.00 C ATOM 179 C CYS 46 -4.676 -9.532 3.839 1.00 0.00 C ATOM 180 O CYS 46 -5.691 -9.725 4.513 1.00 0.00 O ATOM 181 N SER 47 -4.254 -10.386 2.908 1.00 0.00 N ATOM 182 CA SER 47 -4.982 -11.630 2.592 1.00 0.00 C ATOM 183 C SER 47 -5.362 -12.436 3.845 1.00 0.00 C ATOM 184 O SER 47 -6.456 -13.017 3.913 1.00 0.00 O ATOM 185 N SER 48 -4.466 -12.480 4.835 1.00 0.00 N ATOM 186 CA SER 48 -4.722 -13.281 6.034 1.00 0.00 C ATOM 187 C SER 48 -5.298 -12.452 7.189 1.00 0.00 C ATOM 188 O SER 48 -5.444 -12.937 8.310 1.00 0.00 O ATOM 189 N SER 49 -5.597 -11.192 6.889 1.00 0.00 N ATOM 190 CA SER 49 -6.303 -10.303 7.802 1.00 0.00 C ATOM 191 C SER 49 -5.414 -9.698 8.860 1.00 0.00 C ATOM 192 O SER 49 -5.905 -8.994 9.735 1.00 0.00 O ATOM 193 N LYS 50 -4.110 -9.968 8.756 1.00 0.00 N ATOM 194 CA LYS 50 -3.125 -9.613 9.779 1.00 0.00 C ATOM 195 C LYS 50 -2.047 -8.757 9.150 1.00 0.00 C ATOM 196 O LYS 50 -1.711 -8.933 7.977 1.00 0.00 O ATOM 197 N ARG 51 -1.476 -7.854 9.940 1.00 0.00 N ATOM 198 CA ARG 51 -0.426 -6.969 9.440 1.00 0.00 C ATOM 199 C ARG 51 -0.975 -5.786 8.673 1.00 0.00 C ATOM 200 O ARG 51 -2.194 -5.626 8.534 1.00 0.00 O ATOM 201 N ASN 52 -0.076 -4.943 8.180 1.00 0.00 N ATOM 202 CA ASN 52 -0.484 -3.720 7.508 1.00 0.00 C ATOM 203 C ASN 52 -0.104 -3.772 6.054 1.00 0.00 C ATOM 204 O ASN 52 1.090 -3.763 5.738 1.00 0.00 O ATOM 205 N GLU 53 -1.115 -3.837 5.187 1.00 0.00 N ATOM 206 CA GLU 53 -0.888 -3.920 3.742 1.00 0.00 C ATOM 207 C GLU 53 -1.361 -2.680 2.992 1.00 0.00 C ATOM 208 O GLU 53 -2.220 -1.926 3.465 1.00 0.00 O ATOM 209 N PHE 54 -0.767 -2.488 1.814 1.00 0.00 N ATOM 210 CA PHE 54 -0.960 -1.277 1.030 1.00 0.00 C ATOM 211 C PHE 54 -0.982 -1.654 -0.430 1.00 0.00 C ATOM 212 O PHE 54 -0.167 -2.474 -0.878 1.00 0.00 O ATOM 213 N LYS 55 -1.885 -1.006 -1.156 1.00 0.00 N ATOM 214 CA LYS 55 -2.074 -1.244 -2.577 1.00 0.00 C ATOM 215 C LYS 55 -1.522 -0.060 -3.373 1.00 0.00 C ATOM 216 O LYS 55 -1.827 1.111 -3.068 1.00 0.00 O ATOM 217 N SER 56 -0.737 -0.363 -4.408 1.00 0.00 N ATOM 218 CA SER 56 -0.149 0.692 -5.225 1.00 0.00 C ATOM 219 C SER 56 -1.206 1.529 -5.961 1.00 0.00 C ATOM 220 O SER 56 -2.211 0.997 -6.461 1.00 0.00 O ATOM 221 N CYS 57 -0.969 2.840 -6.037 1.00 0.00 N ATOM 222 CA CYS 57 -1.875 3.729 -6.771 1.00 0.00 C ATOM 223 C CYS 57 -1.923 3.339 -8.241 1.00 0.00 C ATOM 224 O CYS 57 -2.991 3.410 -8.882 1.00 0.00 O ATOM 225 N ARG 58 -0.766 2.924 -8.748 1.00 0.00 N ATOM 226 CA ARG 58 -0.590 2.668 -10.173 1.00 0.00 C ATOM 227 C ARG 58 -0.405 1.210 -10.461 1.00 0.00 C ATOM 228 O ARG 58 0.067 0.440 -9.600 1.00 0.00 O ATOM 229 N SER 59 -0.726 0.849 -11.698 1.00 0.00 N ATOM 230 CA SER 59 -0.441 -0.484 -12.185 1.00 0.00 C ATOM 231 C SER 59 1.061 -0.596 -12.512 1.00 0.00 C ATOM 232 O SER 59 1.593 0.228 -13.269 1.00 0.00 O ATOM 233 N ALA 60 1.713 -1.624 -11.961 1.00 0.00 N ATOM 234 CA ALA 60 3.164 -1.827 -12.128 1.00 0.00 C ATOM 235 C ALA 60 3.479 -3.008 -13.014 1.00 0.00 C ATOM 236 O ALA 60 2.670 -3.928 -13.172 1.00 0.00 O ATOM 237 N LEU 61 4.666 -2.971 -13.629 1.00 0.00 N ATOM 238 CA LEU 61 5.179 -4.123 -14.374 1.00 0.00 C ATOM 239 C LEU 61 5.601 -5.226 -13.412 1.00 0.00 C ATOM 240 O LEU 61 6.476 -5.016 -12.576 1.00 0.00 O ATOM 241 N MET 62 4.975 -6.396 -13.503 1.00 0.00 N ATOM 242 CA MET 62 5.393 -7.533 -12.676 1.00 0.00 C ATOM 243 C MET 62 5.550 -8.791 -13.532 1.00 0.00 C ATOM 244 O MET 62 5.145 -8.825 -14.702 1.00 0.00 O ATOM 245 N GLU 63 6.159 -9.810 -12.929 1.00 0.00 N ATOM 246 CA GLU 63 6.239 -11.125 -13.536 1.00 0.00 C ATOM 247 C GLU 63 5.892 -12.160 -12.478 1.00 0.00 C ATOM 248 O GLU 63 6.499 -12.194 -11.403 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 232 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.51 36.8 114 100.0 114 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSMC BURIED . . . . . . . . 84.51 36.8 114 100.0 114 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 49 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 28 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 7 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 14.81 (Number of atoms: 58) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 14.81 58 100.0 58 CRMSCA CRN = ALL/NP . . . . . 0.2553 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSCA BURIED . . . . . . . . 14.81 58 100.0 58 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 14.74 232 80.6 288 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSMC BURIED . . . . . . . . 14.74 232 80.6 288 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 785 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 769 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 785 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.74 232 22.8 1017 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 0.00 0 0.0 0 CRMSALL BURIED . . . . . . . . 14.74 232 22.8 1017 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.799 1.000 0.500 58 100.0 58 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRCA BURIED . . . . . . . . 13.799 1.000 0.500 58 100.0 58 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.743 1.000 0.500 232 80.6 288 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRMC BURIED . . . . . . . . 13.743 1.000 0.500 232 80.6 288 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 785 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 769 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 785 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 13.743 1.000 0.500 232 22.8 1017 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 0 ERRALL BURIED . . . . . . . . 13.743 1.000 0.500 232 22.8 1017 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 3 14 58 58 DISTCA CA (P) 0.00 0.00 1.72 5.17 24.14 58 DISTCA CA (RMS) 0.00 0.00 2.56 3.55 7.46 DISTCA ALL (N) 0 0 2 8 59 232 1017 DISTALL ALL (P) 0.00 0.00 0.20 0.79 5.80 1017 DISTALL ALL (RMS) 0.00 0.00 2.63 3.64 7.50 DISTALL END of the results output