####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 80 ( 393), selected 80 , name T0530TS302_1-D1 # Molecule2: number of CA atoms 80 ( 641), selected 80 , name T0530-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0530TS302_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 80 36 - 115 3.62 3.62 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 56 36 - 91 1.97 3.78 LONGEST_CONTINUOUS_SEGMENT: 56 37 - 92 1.99 3.80 LCS_AVERAGE: 62.70 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 57 - 74 0.98 4.14 LONGEST_CONTINUOUS_SEGMENT: 18 66 - 83 0.96 4.25 LONGEST_CONTINUOUS_SEGMENT: 18 67 - 84 0.98 4.22 LONGEST_CONTINUOUS_SEGMENT: 18 68 - 85 0.98 4.17 LCS_AVERAGE: 16.09 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 80 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 36 H 36 12 56 80 8 24 35 51 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Q 37 Q 37 12 56 80 10 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Q 38 Q 38 12 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT D 39 D 39 12 56 80 9 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT V 40 V 40 12 56 80 9 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Y 41 Y 41 12 56 80 9 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT V 42 V 42 12 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Q 43 Q 43 12 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT I 44 I 44 12 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT D 45 D 45 12 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT R 46 R 46 12 56 80 6 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT D 47 D 47 12 56 80 3 22 40 52 58 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 48 G 48 3 56 80 3 4 4 11 31 53 61 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT R 49 R 49 4 56 80 9 23 40 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT H 50 H 50 5 56 80 9 24 40 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT L 51 L 51 5 56 80 3 4 6 12 34 45 61 65 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT S 52 S 52 5 56 80 3 7 18 28 39 51 62 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT P 53 P 53 7 56 80 2 4 9 26 38 54 62 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 54 G 54 10 56 80 4 13 28 44 56 61 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 55 G 55 10 56 80 8 24 41 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT T 56 T 56 10 56 80 9 24 42 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 57 E 57 18 56 80 9 24 42 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Y 58 Y 58 18 56 80 11 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT T 59 T 59 18 56 80 9 29 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT L 60 L 60 18 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT D 61 D 61 18 56 80 10 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 62 G 62 18 56 80 9 21 41 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Y 63 Y 63 18 56 80 11 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT N 64 N 64 18 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT A 65 A 65 18 56 80 5 22 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT S 66 S 66 18 56 80 5 25 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 67 G 67 18 56 80 5 25 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 68 K 68 18 56 80 7 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 69 K 69 18 56 80 12 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 70 E 70 18 56 80 12 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 71 E 71 18 56 80 7 29 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT V 72 V 72 18 56 80 7 24 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT T 73 T 73 18 56 80 9 25 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT F 74 F 74 18 56 80 9 26 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT F 75 F 75 18 56 80 9 23 40 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT A 76 A 76 18 56 80 9 23 38 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 77 G 77 18 56 80 9 21 38 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 78 K 78 18 56 80 5 25 42 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 79 E 79 18 56 80 7 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT L 80 L 80 18 56 80 3 27 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT R 81 R 81 18 56 80 9 22 40 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 82 K 82 18 56 80 3 23 40 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT N 83 N 83 18 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT A 84 A 84 18 56 80 12 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Y 85 Y 85 18 56 80 12 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT L 86 L 86 14 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 87 K 87 14 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT V 88 V 88 14 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 89 K 89 14 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT A 90 A 90 14 56 80 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 91 K 91 14 56 80 9 28 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT G 92 G 92 6 56 80 3 6 10 29 49 59 62 66 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 93 K 93 6 52 80 3 6 10 14 27 32 50 64 66 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Y 94 Y 94 8 52 80 3 12 39 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT V 95 V 95 10 52 80 7 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 96 E 96 10 52 80 8 27 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT T 97 T 97 10 52 80 10 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT W 98 W 98 10 52 80 7 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 99 E 99 10 52 80 7 28 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 100 E 100 10 52 80 7 27 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT V 101 V 101 10 52 80 7 25 42 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT K 102 K 102 10 52 80 7 15 38 51 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT F 103 F 103 10 52 80 7 11 19 45 56 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT E 104 E 104 10 52 80 7 11 14 32 48 60 65 67 70 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT D 105 D 105 10 52 80 7 11 14 33 53 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT M 106 M 106 10 52 80 4 11 15 39 54 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT P 107 P 107 9 15 80 8 8 9 9 19 22 37 48 57 67 70 72 75 76 77 78 78 79 79 79 LCS_GDT D 108 D 108 9 15 80 8 8 9 20 38 49 62 64 68 71 73 75 76 76 77 78 78 79 79 79 LCS_GDT S 109 S 109 9 9 80 8 8 9 9 9 11 14 22 47 65 70 75 76 76 77 78 78 79 79 79 LCS_GDT V 110 V 110 9 9 80 8 8 10 37 49 59 65 67 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT Q 111 Q 111 9 9 80 8 8 9 9 24 53 63 66 71 73 73 75 76 76 77 78 78 79 79 79 LCS_GDT S 112 S 112 9 9 80 8 8 9 11 19 22 25 38 56 63 70 74 76 76 77 78 78 79 79 79 LCS_GDT K 113 K 113 9 9 80 8 8 9 9 9 12 14 24 39 48 58 67 71 75 77 78 78 79 79 79 LCS_GDT L 114 L 114 9 9 80 8 8 9 9 9 10 13 19 21 38 56 60 71 72 76 76 78 79 79 79 LCS_GDT K 115 K 115 9 9 80 3 8 9 9 9 10 11 17 18 21 27 33 38 66 72 73 73 78 79 79 LCS_AVERAGE LCS_A: 59.60 ( 16.09 62.70 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 30 43 54 59 62 65 67 71 73 73 75 76 76 77 78 78 79 79 79 GDT PERCENT_AT 16.25 37.50 53.75 67.50 73.75 77.50 81.25 83.75 88.75 91.25 91.25 93.75 95.00 95.00 96.25 97.50 97.50 98.75 98.75 98.75 GDT RMS_LOCAL 0.39 0.66 0.93 1.21 1.36 1.57 1.72 1.84 2.23 2.37 2.37 2.60 2.74 2.74 2.87 3.08 3.08 3.30 3.30 3.30 GDT RMS_ALL_AT 4.01 4.21 4.16 3.97 3.89 3.90 3.84 3.86 3.71 3.72 3.72 3.69 3.66 3.66 3.68 3.65 3.65 3.63 3.63 3.63 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 36 H 36 1.996 5 0.048 0.067 3.384 70.833 33.333 LGA Q 37 Q 37 1.040 4 0.033 0.057 1.340 85.952 48.254 LGA Q 38 Q 38 0.784 4 0.128 0.167 0.941 90.476 50.265 LGA D 39 D 39 1.495 3 0.065 0.090 1.906 81.429 49.821 LGA V 40 V 40 0.962 2 0.059 0.068 1.218 83.690 60.748 LGA Y 41 Y 41 1.031 7 0.150 0.171 1.116 83.690 34.683 LGA V 42 V 42 0.948 2 0.017 0.023 1.157 90.476 63.333 LGA Q 43 Q 43 0.920 4 0.045 0.046 1.124 90.476 49.259 LGA I 44 I 44 0.790 3 0.027 0.052 0.844 90.476 56.548 LGA D 45 D 45 0.566 3 0.284 0.288 2.174 81.786 50.000 LGA R 46 R 46 1.183 6 0.146 0.171 1.460 83.690 37.835 LGA D 47 D 47 2.784 3 0.089 0.142 5.157 55.595 31.071 LGA G 48 G 48 4.119 0 0.662 0.662 4.119 50.357 50.357 LGA R 49 R 49 2.142 6 0.241 0.256 2.891 66.905 29.524 LGA H 50 H 50 2.174 5 0.094 0.120 5.297 48.214 26.571 LGA L 51 L 51 6.654 3 0.601 0.562 9.621 13.095 7.798 LGA S 52 S 52 6.677 1 0.206 0.289 7.900 11.905 11.508 LGA P 53 P 53 6.411 2 0.051 0.063 7.815 16.905 11.088 LGA G 54 G 54 3.411 0 0.701 0.701 3.792 48.452 48.452 LGA G 55 G 55 1.414 0 0.084 0.084 1.860 79.286 79.286 LGA T 56 T 56 1.124 2 0.100 0.124 1.271 81.429 58.163 LGA E 57 E 57 1.362 4 0.050 0.046 1.757 83.690 45.291 LGA Y 58 Y 58 0.530 7 0.217 0.233 0.958 90.476 37.698 LGA T 59 T 59 0.513 2 0.042 0.052 0.766 92.857 65.986 LGA L 60 L 60 0.500 3 0.060 0.099 0.655 95.238 58.929 LGA D 61 D 61 1.112 3 0.086 0.091 1.641 81.548 50.952 LGA G 62 G 62 2.175 0 0.172 0.172 2.175 70.833 70.833 LGA Y 63 Y 63 0.517 7 0.121 0.146 1.044 88.214 36.944 LGA N 64 N 64 1.051 3 0.047 0.112 1.782 79.405 49.881 LGA A 65 A 65 2.319 0 0.041 0.056 3.197 61.190 60.381 LGA S 66 S 66 2.737 1 0.206 0.204 2.910 60.952 50.159 LGA G 67 G 67 2.591 0 0.079 0.079 2.659 59.048 59.048 LGA K 68 K 68 1.883 4 0.127 0.183 1.987 75.000 41.429 LGA K 69 K 69 1.819 4 0.091 0.117 2.096 68.810 38.677 LGA E 70 E 70 1.576 4 0.077 0.085 1.654 72.857 40.476 LGA E 71 E 71 1.478 4 0.084 0.081 1.876 77.143 43.333 LGA V 72 V 72 1.685 2 0.026 0.033 2.114 79.405 54.626 LGA T 73 T 73 1.025 2 0.076 0.071 2.206 77.262 54.558 LGA F 74 F 74 0.867 6 0.125 0.169 0.913 90.476 41.126 LGA F 75 F 75 1.613 6 0.035 0.034 2.484 70.833 31.645 LGA A 76 A 76 1.695 0 0.034 0.035 1.695 77.143 76.286 LGA G 77 G 77 1.862 0 0.246 0.246 2.235 70.833 70.833 LGA K 78 K 78 0.777 4 0.038 0.042 1.229 88.214 48.254 LGA E 79 E 79 1.097 4 0.053 0.054 1.334 83.690 46.243 LGA L 80 L 80 1.839 3 0.075 0.106 2.051 68.810 42.500 LGA R 81 R 81 2.545 6 0.037 0.037 2.893 62.857 28.052 LGA K 82 K 82 2.194 4 0.074 0.097 2.353 68.810 37.778 LGA N 83 N 83 0.559 3 0.112 0.103 1.157 88.214 55.417 LGA A 84 A 84 1.560 0 0.050 0.071 1.936 79.286 78.000 LGA Y 85 Y 85 1.402 7 0.132 0.167 1.953 79.286 33.214 LGA L 86 L 86 0.565 3 0.100 0.115 0.729 92.857 57.738 LGA K 87 K 87 0.668 4 0.051 0.054 0.920 90.476 50.265 LGA V 88 V 88 0.817 2 0.043 0.057 0.925 90.476 64.626 LGA K 89 K 89 0.425 4 0.081 0.117 1.363 90.595 51.376 LGA A 90 A 90 0.689 0 0.055 0.062 1.398 92.857 90.571 LGA K 91 K 91 1.059 4 0.271 0.389 1.823 86.190 47.354 LGA G 92 G 92 5.012 0 0.429 0.429 6.491 27.024 27.024 LGA K 93 K 93 6.350 4 0.099 0.103 8.586 31.310 14.233 LGA Y 94 Y 94 1.485 7 0.617 0.561 2.995 73.095 29.127 LGA V 95 V 95 0.924 2 0.159 0.166 1.255 85.952 63.401 LGA E 96 E 96 1.000 4 0.079 0.092 1.413 88.214 48.254 LGA T 97 T 97 0.878 2 0.037 0.053 1.557 83.810 60.816 LGA W 98 W 98 1.677 9 0.058 0.066 1.944 77.143 27.245 LGA E 99 E 99 2.027 4 0.062 0.057 2.125 70.952 38.730 LGA E 100 E 100 1.200 4 0.028 0.031 1.564 83.810 45.344 LGA V 101 V 101 0.879 2 0.043 0.062 1.110 88.214 62.041 LGA K 102 K 102 1.833 4 0.049 0.051 2.202 70.952 39.630 LGA F 103 F 103 3.061 6 0.006 0.013 3.603 51.786 22.771 LGA E 104 E 104 4.020 4 0.158 0.173 4.232 40.238 22.011 LGA D 105 D 105 3.637 3 0.206 0.221 3.929 43.333 27.917 LGA M 106 M 106 3.329 3 0.629 0.616 4.257 46.786 29.643 LGA P 107 P 107 7.562 2 0.604 0.598 10.162 17.262 9.864 LGA D 108 D 108 6.215 3 0.023 0.028 7.981 17.262 9.524 LGA S 109 S 109 8.184 1 0.040 0.061 10.032 8.095 5.397 LGA V 110 V 110 4.077 2 0.011 0.016 5.566 30.476 23.605 LGA Q 111 Q 111 4.778 4 0.033 0.031 8.221 23.214 14.444 LGA S 112 S 112 9.201 1 0.058 0.074 12.336 3.690 2.460 LGA K 113 K 113 11.419 4 0.085 0.094 13.977 0.000 0.000 LGA L 114 L 114 11.810 3 0.167 0.177 15.772 0.000 0.000 LGA K 115 K 115 15.196 5 0.074 0.947 18.384 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 80 320 320 100.00 641 393 61.31 80 SUMMARY(RMSD_GDC): 3.619 3.746 3.807 65.670 41.523 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 80 80 4.0 67 1.84 71.562 73.028 3.461 LGA_LOCAL RMSD: 1.836 Number of atoms: 67 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.860 Number of assigned atoms: 80 Std_ASGN_ATOMS RMSD: 3.619 Standard rmsd on all 80 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.650053 * X + 0.291672 * Y + 0.701683 * Z + 31.757898 Y_new = -0.176332 * X + 0.840297 * Y + -0.512648 * Z + 8.683448 Z_new = -0.739147 * X + -0.456978 * Y + -0.494806 * Z + 8.923136 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.876709 0.831803 -2.395919 [DEG: -164.8233 47.6588 -137.2760 ] ZXZ: 0.939828 2.088408 -2.124527 [DEG: 53.8482 119.6570 -121.7264 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0530TS302_1-D1 REMARK 2: T0530-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0530TS302_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 80 80 4.0 67 1.84 73.028 3.62 REMARK ---------------------------------------------------------- MOLECULE T0530TS302_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0530 REMARK MODEL 1 REMARK PARENT 2k5q_A ATOM 176 N HIS 36 57.060 22.453 -3.965 1.00 0.00 N ATOM 177 CA HIS 36 56.528 22.946 -5.231 1.00 0.00 C ATOM 178 C HIS 36 55.269 22.188 -5.633 1.00 0.00 C ATOM 179 O HIS 36 55.272 20.960 -5.714 1.00 0.00 O ATOM 180 CB HIS 36 57.581 22.843 -6.324 1.00 0.00 C ATOM 181 N GLN 37 54.194 22.928 -5.882 1.00 0.00 N ATOM 182 CA GLN 37 52.921 22.325 -6.260 1.00 0.00 C ATOM 183 C GLN 37 53.091 21.367 -7.431 1.00 0.00 C ATOM 184 O GLN 37 53.895 21.609 -8.331 1.00 0.00 O ATOM 185 CB GLN 37 51.904 23.404 -6.599 1.00 0.00 C ATOM 186 N GLN 38 52.329 20.279 -7.414 1.00 0.00 N ATOM 187 CA GLN 38 52.359 19.305 -8.499 1.00 0.00 C ATOM 188 C GLN 38 50.978 19.126 -9.116 1.00 0.00 C ATOM 189 O GLN 38 49.992 18.923 -8.406 1.00 0.00 O ATOM 190 CB GLN 38 52.898 17.973 -8.002 1.00 0.00 C ATOM 191 N ASP 39 50.912 19.200 -10.441 1.00 0.00 N ATOM 192 CA ASP 39 49.656 19.017 -11.158 1.00 0.00 C ATOM 193 C ASP 39 49.557 17.615 -11.745 1.00 0.00 C ATOM 194 O ASP 39 50.505 17.119 -12.353 1.00 0.00 O ATOM 195 CB ASP 39 49.511 20.064 -12.251 1.00 0.00 C ATOM 196 N VAL 40 48.404 16.982 -11.560 1.00 0.00 N ATOM 197 CA VAL 40 48.169 15.647 -12.096 1.00 0.00 C ATOM 198 C VAL 40 46.896 15.605 -12.932 1.00 0.00 C ATOM 199 O VAL 40 45.795 15.788 -12.414 1.00 0.00 O ATOM 200 CB VAL 40 48.098 14.628 -10.969 1.00 0.00 C ATOM 201 N TYR 41 47.054 15.362 -14.229 1.00 0.00 N ATOM 202 CA TYR 41 45.914 15.234 -15.129 1.00 0.00 C ATOM 203 C TYR 41 45.470 13.782 -15.253 1.00 0.00 C ATOM 204 O TYR 41 46.105 12.986 -15.945 1.00 0.00 O ATOM 205 CB TYR 41 46.252 15.806 -16.497 1.00 0.00 C ATOM 206 N VAL 42 44.376 13.443 -14.579 1.00 0.00 N ATOM 207 CA VAL 42 43.885 12.071 -14.556 1.00 0.00 C ATOM 208 C VAL 42 42.538 11.956 -15.259 1.00 0.00 C ATOM 209 O VAL 42 41.819 12.944 -15.409 1.00 0.00 O ATOM 210 CB VAL 42 43.782 11.569 -13.124 1.00 0.00 C ATOM 211 N GLN 43 42.202 10.745 -15.689 1.00 0.00 N ATOM 212 CA GLN 43 40.912 10.485 -16.316 1.00 0.00 C ATOM 213 C GLN 43 40.155 9.385 -15.581 1.00 0.00 C ATOM 214 O GLN 43 40.709 8.324 -15.292 1.00 0.00 O ATOM 215 CB GLN 43 41.097 10.117 -17.779 1.00 0.00 C ATOM 216 N ILE 44 38.887 9.644 -15.283 1.00 0.00 N ATOM 217 CA ILE 44 38.090 8.735 -14.468 1.00 0.00 C ATOM 218 C ILE 44 37.635 7.527 -15.277 1.00 0.00 C ATOM 219 O ILE 44 36.537 7.519 -15.834 1.00 0.00 O ATOM 220 CB ILE 44 36.892 9.462 -13.877 1.00 0.00 C ATOM 221 N ASP 45 38.484 6.508 -15.339 1.00 0.00 N ATOM 222 CA ASP 45 38.121 5.244 -15.971 1.00 0.00 C ATOM 223 C ASP 45 37.239 4.404 -15.056 1.00 0.00 C ATOM 224 O ASP 45 36.262 3.804 -15.501 1.00 0.00 O ATOM 225 CB ASP 45 39.370 4.471 -16.364 1.00 0.00 C ATOM 226 N ARG 46 37.591 4.367 -13.775 1.00 0.00 N ATOM 227 CA ARG 46 36.899 3.513 -12.816 1.00 0.00 C ATOM 228 C ARG 46 35.927 4.318 -11.963 1.00 0.00 C ATOM 229 O ARG 46 36.315 5.283 -11.305 1.00 0.00 O ATOM 230 CB ARG 46 37.902 2.784 -11.936 1.00 0.00 C ATOM 231 N ASP 47 34.661 3.914 -11.978 1.00 0.00 N ATOM 232 CA ASP 47 33.620 4.628 -11.249 1.00 0.00 C ATOM 233 C ASP 47 32.760 3.670 -10.435 1.00 0.00 C ATOM 234 O ASP 47 32.812 2.456 -10.630 1.00 0.00 O ATOM 235 CB ASP 47 32.757 5.434 -12.210 1.00 0.00 C ATOM 236 N GLY 48 31.968 4.224 -9.523 1.00 0.00 N ATOM 237 CA GLY 48 31.000 3.436 -8.770 1.00 0.00 C ATOM 238 C GLY 48 31.684 2.604 -7.693 1.00 0.00 C ATOM 239 O GLY 48 31.099 1.663 -7.158 1.00 0.00 O ATOM 241 N ARG 49 32.926 2.958 -7.381 1.00 0.00 N ATOM 242 CA ARG 49 33.702 2.229 -6.383 1.00 0.00 C ATOM 243 C ARG 49 33.208 2.532 -4.973 1.00 0.00 C ATOM 244 O ARG 49 33.771 3.374 -4.275 1.00 0.00 O ATOM 245 CB ARG 49 35.179 2.565 -6.512 1.00 0.00 C ATOM 246 N HIS 50 32.152 1.837 -4.560 1.00 0.00 N ATOM 247 CA HIS 50 31.600 2.007 -3.222 1.00 0.00 C ATOM 248 C HIS 50 31.109 0.681 -2.657 1.00 0.00 C ATOM 249 O HIS 50 30.249 0.025 -3.244 1.00 0.00 O ATOM 250 CB HIS 50 30.473 3.028 -3.239 1.00 0.00 C ATOM 251 N LEU 51 31.660 0.291 -1.513 1.00 0.00 N ATOM 252 CA LEU 51 31.249 -0.937 -0.843 1.00 0.00 C ATOM 253 C LEU 51 29.805 -0.847 -0.366 1.00 0.00 C ATOM 254 O LEU 51 29.046 -1.812 -0.463 1.00 0.00 O ATOM 255 CB LEU 51 32.177 -1.243 0.323 1.00 0.00 C ATOM 256 N SER 52 29.430 0.318 0.152 1.00 0.00 N ATOM 257 CA SER 52 28.087 0.525 0.680 1.00 0.00 C ATOM 258 C SER 52 27.726 2.005 0.705 1.00 0.00 C ATOM 259 O SER 52 28.296 2.805 -0.038 1.00 0.00 O ATOM 260 CB SER 52 27.966 -0.074 2.072 1.00 0.00 C ATOM 261 N PRO 53 26.778 2.364 1.564 1.00 0.00 N ATOM 262 CA PRO 53 26.461 3.765 1.812 1.00 0.00 C ATOM 263 C PRO 53 27.664 4.513 2.371 1.00 0.00 C ATOM 264 O PRO 53 28.155 4.197 3.454 1.00 0.00 O ATOM 265 CB PRO 53 25.276 3.880 2.759 1.00 0.00 C ATOM 266 N GLY 54 28.135 5.507 1.626 1.00 0.00 N ATOM 267 CA GLY 54 29.355 6.220 1.982 1.00 0.00 C ATOM 268 C GLY 54 30.006 6.845 0.755 1.00 0.00 C ATOM 269 O GLY 54 29.338 7.123 -0.241 1.00 0.00 O ATOM 271 N GLY 55 31.315 7.064 0.832 1.00 0.00 N ATOM 272 CA GLY 55 32.042 7.741 -0.234 1.00 0.00 C ATOM 273 C GLY 55 32.456 6.763 -1.327 1.00 0.00 C ATOM 274 O GLY 55 32.249 5.555 -1.203 1.00 0.00 O ATOM 276 N THR 56 33.042 7.291 -2.397 1.00 0.00 N ATOM 277 CA THR 56 33.475 6.465 -3.517 1.00 0.00 C ATOM 278 C THR 56 34.987 6.535 -3.700 1.00 0.00 C ATOM 279 O THR 56 35.614 7.545 -3.379 1.00 0.00 O ATOM 280 CB THR 56 32.766 6.890 -4.794 1.00 0.00 C ATOM 281 N GLU 57 35.566 5.456 -4.216 1.00 0.00 N ATOM 282 CA GLU 57 37.011 5.368 -4.383 1.00 0.00 C ATOM 283 C GLU 57 37.410 5.543 -5.843 1.00 0.00 C ATOM 284 O GLU 57 36.857 4.891 -6.729 1.00 0.00 O ATOM 285 CB GLU 57 37.526 4.042 -3.846 1.00 0.00 C ATOM 286 N TYR 58 38.371 6.426 -6.086 1.00 0.00 N ATOM 287 CA TYR 58 38.907 6.625 -7.428 1.00 0.00 C ATOM 288 C TYR 58 40.415 6.417 -7.455 1.00 0.00 C ATOM 289 O TYR 58 41.182 7.316 -7.109 1.00 0.00 O ATOM 290 CB TYR 58 38.552 8.013 -7.940 1.00 0.00 C ATOM 291 N THR 59 40.836 5.226 -7.869 1.00 0.00 N ATOM 292 CA THR 59 42.254 4.912 -7.983 1.00 0.00 C ATOM 293 C THR 59 42.690 4.859 -9.442 1.00 0.00 C ATOM 294 O THR 59 42.180 4.057 -10.224 1.00 0.00 O ATOM 295 CB THR 59 42.564 3.596 -7.286 1.00 0.00 C ATOM 296 N LEU 60 43.638 5.718 -9.802 1.00 0.00 N ATOM 297 CA LEU 60 44.068 5.847 -11.189 1.00 0.00 C ATOM 298 C LEU 60 45.490 6.384 -11.279 1.00 0.00 C ATOM 299 O LEU 60 46.047 6.861 -10.290 1.00 0.00 O ATOM 300 CB LEU 60 43.111 6.746 -11.959 1.00 0.00 C ATOM 301 N ASP 61 46.075 6.303 -12.469 1.00 0.00 N ATOM 302 CA ASP 61 47.417 6.822 -12.701 1.00 0.00 C ATOM 303 C ASP 61 47.381 8.300 -13.069 1.00 0.00 C ATOM 304 O ASP 61 46.693 8.699 -14.008 1.00 0.00 O ATOM 305 CB ASP 61 48.116 6.020 -13.788 1.00 0.00 C ATOM 306 N GLY 62 48.126 9.108 -12.321 1.00 0.00 N ATOM 307 CA GLY 62 48.127 10.553 -12.524 1.00 0.00 C ATOM 308 C GLY 62 49.314 10.988 -13.374 1.00 0.00 C ATOM 309 O GLY 62 50.408 10.437 -13.258 1.00 0.00 O ATOM 311 N TYR 63 49.090 11.980 -14.228 1.00 0.00 N ATOM 312 CA TYR 63 50.128 12.460 -15.133 1.00 0.00 C ATOM 313 C TYR 63 50.534 13.889 -14.798 1.00 0.00 C ATOM 314 O TYR 63 49.731 14.815 -14.909 1.00 0.00 O ATOM 315 CB TYR 63 49.657 12.365 -16.577 1.00 0.00 C ATOM 316 N ASN 64 51.786 14.062 -14.389 1.00 0.00 N ATOM 317 CA ASN 64 52.295 15.376 -14.014 1.00 0.00 C ATOM 318 C ASN 64 52.831 16.125 -15.227 1.00 0.00 C ATOM 319 O ASN 64 52.919 15.570 -16.323 1.00 0.00 O ATOM 320 CB ASN 64 53.374 15.243 -12.951 1.00 0.00 C ATOM 321 N ALA 65 53.188 17.389 -15.026 1.00 0.00 N ATOM 322 CA ALA 65 53.764 18.201 -16.090 1.00 0.00 C ATOM 323 C ALA 65 55.083 17.616 -16.579 1.00 0.00 C ATOM 324 O ALA 65 55.412 17.704 -17.761 1.00 0.00 O ATOM 325 CB ALA 65 53.961 19.634 -15.617 1.00 0.00 C ATOM 326 N SER 66 55.834 17.017 -15.660 1.00 0.00 N ATOM 327 CA SER 66 57.138 16.451 -15.987 1.00 0.00 C ATOM 328 C SER 66 57.002 15.272 -16.940 1.00 0.00 C ATOM 329 O SER 66 57.902 14.995 -17.733 1.00 0.00 O ATOM 330 CB SER 66 57.866 16.031 -14.719 1.00 0.00 C ATOM 331 N GLY 67 55.872 14.577 -16.858 1.00 0.00 N ATOM 332 CA GLY 67 55.641 13.391 -17.674 1.00 0.00 C ATOM 333 C GLY 67 55.882 12.117 -16.874 1.00 0.00 C ATOM 334 O GLY 67 56.171 11.063 -17.440 1.00 0.00 O ATOM 336 N LYS 68 55.760 12.219 -15.555 1.00 0.00 N ATOM 337 CA LYS 68 55.936 11.070 -14.677 1.00 0.00 C ATOM 338 C LYS 68 54.620 10.335 -14.460 1.00 0.00 C ATOM 339 O LYS 68 53.555 10.823 -14.840 1.00 0.00 O ATOM 340 CB LYS 68 56.529 11.505 -13.346 1.00 0.00 C ATOM 341 N LYS 69 54.698 9.160 -13.846 1.00 0.00 N ATOM 342 CA LYS 69 53.509 8.369 -13.550 1.00 0.00 C ATOM 343 C LYS 69 53.312 8.214 -12.047 1.00 0.00 C ATOM 344 O LYS 69 54.157 7.647 -11.355 1.00 0.00 O ATOM 345 CB LYS 69 53.598 7.006 -14.219 1.00 0.00 C ATOM 346 N GLU 70 52.188 8.720 -11.548 1.00 0.00 N ATOM 347 CA GLU 70 51.915 8.711 -10.116 1.00 0.00 C ATOM 348 C GLU 70 50.669 7.895 -9.799 1.00 0.00 C ATOM 349 O GLU 70 49.656 7.993 -10.493 1.00 0.00 O ATOM 350 CB GLU 70 51.768 10.133 -9.596 1.00 0.00 C ATOM 351 N GLU 71 50.747 7.090 -8.744 1.00 0.00 N ATOM 352 CA GLU 71 49.601 6.315 -8.285 1.00 0.00 C ATOM 353 C GLU 71 48.940 6.972 -7.080 1.00 0.00 C ATOM 354 O GLU 71 49.576 7.176 -6.046 1.00 0.00 O ATOM 355 CB GLU 71 50.022 4.892 -7.952 1.00 0.00 C ATOM 356 N VAL 72 47.660 7.299 -7.218 1.00 0.00 N ATOM 357 CA VAL 72 46.916 7.954 -6.149 1.00 0.00 C ATOM 358 C VAL 72 45.466 7.489 -6.121 1.00 0.00 C ATOM 359 O VAL 72 44.845 7.299 -7.167 1.00 0.00 O ATOM 360 CB VAL 72 46.986 9.466 -6.303 1.00 0.00 C ATOM 361 N THR 73 44.931 7.306 -4.919 1.00 0.00 N ATOM 362 CA THR 73 43.518 6.990 -4.749 1.00 0.00 C ATOM 363 C THR 73 42.836 7.997 -3.831 1.00 0.00 C ATOM 364 O THR 73 43.169 8.102 -2.651 1.00 0.00 O ATOM 365 CB THR 73 43.351 5.578 -4.206 1.00 0.00 C ATOM 366 N PHE 74 41.878 8.736 -4.381 1.00 0.00 N ATOM 367 CA PHE 74 41.149 9.740 -3.614 1.00 0.00 C ATOM 368 C PHE 74 39.665 9.408 -3.543 1.00 0.00 C ATOM 369 O PHE 74 39.052 9.041 -4.546 1.00 0.00 O ATOM 370 CB PHE 74 41.358 11.120 -4.215 1.00 0.00 C ATOM 371 N PHE 75 39.090 9.539 -2.352 1.00 0.00 N ATOM 372 CA PHE 75 37.681 9.233 -2.144 1.00 0.00 C ATOM 373 C PHE 75 36.873 10.501 -1.892 1.00 0.00 C ATOM 374 O PHE 75 37.305 11.386 -1.154 1.00 0.00 O ATOM 375 CB PHE 75 37.515 8.258 -0.989 1.00 0.00 C ATOM 376 N ALA 76 35.700 10.581 -2.509 1.00 0.00 N ATOM 377 CA ALA 76 34.838 11.749 -2.368 1.00 0.00 C ATOM 378 C ALA 76 33.452 11.355 -1.875 1.00 0.00 C ATOM 379 O ALA 76 32.968 10.260 -2.162 1.00 0.00 O ATOM 380 CB ALA 76 34.741 12.497 -3.688 1.00 0.00 C ATOM 381 N GLY 77 32.817 12.253 -1.131 1.00 0.00 N ATOM 382 CA GLY 77 31.469 12.016 -0.626 1.00 0.00 C ATOM 383 C GLY 77 30.496 11.737 -1.764 1.00 0.00 C ATOM 384 O GLY 77 29.631 10.868 -1.655 1.00 0.00 O ATOM 386 N LYS 78 30.643 12.479 -2.856 1.00 0.00 N ATOM 387 CA LYS 78 29.751 12.342 -4.001 1.00 0.00 C ATOM 388 C LYS 78 30.467 11.701 -5.183 1.00 0.00 C ATOM 389 O LYS 78 31.694 11.736 -5.271 1.00 0.00 O ATOM 390 CB LYS 78 29.181 13.696 -4.395 1.00 0.00 C ATOM 391 N GLU 79 29.693 11.115 -6.091 1.00 0.00 N ATOM 392 CA GLU 79 30.243 10.537 -7.310 1.00 0.00 C ATOM 393 C GLU 79 30.464 11.604 -8.375 1.00 0.00 C ATOM 394 O GLU 79 29.529 12.297 -8.774 1.00 0.00 O ATOM 395 CB GLU 79 29.331 9.440 -7.835 1.00 0.00 C ATOM 396 N LEU 80 31.704 11.731 -8.831 1.00 0.00 N ATOM 397 CA LEU 80 32.072 12.782 -9.773 1.00 0.00 C ATOM 398 C LEU 80 31.815 12.348 -11.210 1.00 0.00 C ATOM 399 O LEU 80 31.456 11.198 -11.467 1.00 0.00 O ATOM 400 CB LEU 80 33.530 13.174 -9.587 1.00 0.00 C ATOM 401 N ARG 81 32.000 13.275 -12.144 1.00 0.00 N ATOM 402 CA ARG 81 31.733 13.007 -13.552 1.00 0.00 C ATOM 403 C ARG 81 32.703 11.974 -14.110 1.00 0.00 C ATOM 404 O ARG 81 33.918 12.098 -13.951 1.00 0.00 O ATOM 405 CB ARG 81 31.803 14.294 -14.359 1.00 0.00 C ATOM 406 N LYS 82 32.160 10.953 -14.765 1.00 0.00 N ATOM 407 CA LYS 82 32.977 9.897 -15.350 1.00 0.00 C ATOM 408 C LYS 82 33.446 10.276 -16.750 1.00 0.00 C ATOM 409 O LYS 82 32.813 11.084 -17.429 1.00 0.00 O ATOM 410 CB LYS 82 32.205 8.587 -15.384 1.00 0.00 C ATOM 411 N ASN 83 34.559 9.688 -17.175 1.00 0.00 N ATOM 412 CA ASN 83 35.069 9.895 -18.524 1.00 0.00 C ATOM 413 C ASN 83 35.466 11.350 -18.746 1.00 0.00 C ATOM 414 O ASN 83 35.614 11.796 -19.884 1.00 0.00 O ATOM 415 CB ASN 83 34.034 9.464 -19.553 1.00 0.00 C ATOM 416 N ALA 84 35.638 12.084 -17.652 1.00 0.00 N ATOM 417 CA ALA 84 36.129 13.455 -17.719 1.00 0.00 C ATOM 418 C ALA 84 37.607 13.529 -17.356 1.00 0.00 C ATOM 419 O ALA 84 38.173 12.575 -16.823 1.00 0.00 O ATOM 420 CB ALA 84 35.312 14.356 -16.807 1.00 0.00 C ATOM 421 N TYR 85 38.225 14.667 -17.650 1.00 0.00 N ATOM 422 CA TYR 85 39.622 14.892 -17.297 1.00 0.00 C ATOM 423 C TYR 85 39.743 15.699 -16.011 1.00 0.00 C ATOM 424 O TYR 85 39.466 16.899 -15.991 1.00 0.00 O ATOM 425 CB TYR 85 40.350 15.593 -18.435 1.00 0.00 C ATOM 426 N LEU 86 40.157 15.034 -14.938 1.00 0.00 N ATOM 427 CA LEU 86 40.154 15.642 -13.612 1.00 0.00 C ATOM 428 C LEU 86 41.552 16.095 -13.211 1.00 0.00 C ATOM 429 O LEU 86 42.501 15.312 -13.235 1.00 0.00 O ATOM 430 CB LEU 86 39.596 14.668 -12.585 1.00 0.00 C ATOM 431 N LYS 87 41.673 17.367 -12.844 1.00 0.00 N ATOM 432 CA LYS 87 42.949 17.921 -12.406 1.00 0.00 C ATOM 433 C LYS 87 43.104 17.819 -10.895 1.00 0.00 C ATOM 434 O LYS 87 42.378 18.468 -10.142 1.00 0.00 O ATOM 435 CB LYS 87 43.083 19.366 -12.860 1.00 0.00 C ATOM 436 N VAL 88 44.054 17.000 -10.455 1.00 0.00 N ATOM 437 CA VAL 88 44.251 16.749 -9.033 1.00 0.00 C ATOM 438 C VAL 88 45.489 17.469 -8.514 1.00 0.00 C ATOM 439 O VAL 88 46.578 17.332 -9.071 1.00 0.00 O ATOM 440 CB VAL 88 44.354 15.255 -8.767 1.00 0.00 C ATOM 441 N LYS 89 45.316 18.236 -7.443 1.00 0.00 N ATOM 442 CA LYS 89 46.420 18.970 -6.839 1.00 0.00 C ATOM 443 C LYS 89 47.210 18.087 -5.881 1.00 0.00 C ATOM 444 O LYS 89 46.685 17.111 -5.345 1.00 0.00 O ATOM 445 CB LYS 89 45.906 20.207 -6.120 1.00 0.00 C ATOM 446 N ALA 90 48.475 18.435 -5.669 1.00 0.00 N ATOM 447 CA ALA 90 49.328 17.699 -4.744 1.00 0.00 C ATOM 448 C ALA 90 49.938 18.627 -3.700 1.00 0.00 C ATOM 449 O ALA 90 50.273 19.773 -3.995 1.00 0.00 O ATOM 450 CB ALA 90 50.419 16.960 -5.502 1.00 0.00 C ATOM 451 N LYS 91 50.078 18.123 -2.478 1.00 0.00 N ATOM 452 CA LYS 91 50.619 18.915 -1.381 1.00 0.00 C ATOM 453 C LYS 91 51.041 18.028 -0.217 1.00 0.00 C ATOM 454 O LYS 91 51.248 16.825 -0.383 1.00 0.00 O ATOM 455 CB LYS 91 49.604 19.948 -0.921 1.00 0.00 C ATOM 456 N GLY 92 51.167 18.626 0.962 1.00 0.00 N ATOM 457 CA GLY 92 51.546 17.887 2.161 1.00 0.00 C ATOM 458 C GLY 92 50.697 16.635 2.327 1.00 0.00 C ATOM 459 O GLY 92 51.214 15.556 2.618 1.00 0.00 O ATOM 461 N LYS 93 49.389 16.783 2.140 1.00 0.00 N ATOM 462 CA LYS 93 48.486 15.640 2.108 1.00 0.00 C ATOM 463 C LYS 93 48.484 14.977 0.737 1.00 0.00 C ATOM 464 O LYS 93 48.012 13.851 0.580 1.00 0.00 O ATOM 465 CB LYS 93 47.078 16.065 2.495 1.00 0.00 C ATOM 466 N TYR 94 49.016 15.683 -0.256 1.00 0.00 N ATOM 467 CA TYR 94 49.185 15.121 -1.591 1.00 0.00 C ATOM 468 C TYR 94 47.911 15.266 -2.415 1.00 0.00 C ATOM 469 O TYR 94 47.963 15.389 -3.639 1.00 0.00 O ATOM 470 CB TYR 94 49.597 13.660 -1.503 1.00 0.00 C ATOM 471 N VAL 95 46.769 15.252 -1.737 1.00 0.00 N ATOM 472 CA VAL 95 45.483 15.434 -2.398 1.00 0.00 C ATOM 473 C VAL 95 44.483 16.123 -1.479 1.00 0.00 C ATOM 474 O VAL 95 43.802 15.471 -0.686 1.00 0.00 O ATOM 475 CB VAL 95 44.936 14.095 -2.872 1.00 0.00 C ATOM 476 N GLU 96 44.397 17.444 -1.591 1.00 0.00 N ATOM 477 CA GLU 96 43.362 18.206 -0.901 1.00 0.00 C ATOM 478 C GLU 96 42.180 18.488 -1.820 1.00 0.00 C ATOM 479 O GLU 96 41.037 18.169 -1.492 1.00 0.00 O ATOM 480 CB GLU 96 43.935 19.506 -0.356 1.00 0.00 C ATOM 481 N THR 97 42.463 19.087 -2.972 1.00 0.00 N ATOM 482 CA THR 97 41.415 19.613 -3.839 1.00 0.00 C ATOM 483 C THR 97 41.645 19.207 -5.289 1.00 0.00 C ATOM 484 O THR 97 42.785 19.077 -5.734 1.00 0.00 O ATOM 485 CB THR 97 41.338 21.127 -3.716 1.00 0.00 C ATOM 486 N TRP 98 40.554 19.007 -6.022 1.00 0.00 N ATOM 487 CA TRP 98 40.631 18.767 -7.458 1.00 0.00 C ATOM 488 C TRP 98 39.781 19.769 -8.230 1.00 0.00 C ATOM 489 O TRP 98 38.668 20.100 -7.820 1.00 0.00 O ATOM 490 CB TRP 98 40.199 17.345 -7.781 1.00 0.00 C ATOM 491 N GLU 99 40.314 20.251 -9.347 1.00 0.00 N ATOM 492 CA GLU 99 39.553 21.104 -10.252 1.00 0.00 C ATOM 493 C GLU 99 38.990 20.305 -11.420 1.00 0.00 C ATOM 494 O GLU 99 39.733 19.654 -12.155 1.00 0.00 O ATOM 495 CB GLU 99 40.420 22.247 -10.760 1.00 0.00 C ATOM 496 N GLU 100 37.673 20.356 -11.586 1.00 0.00 N ATOM 497 CA GLU 100 37.006 19.621 -12.655 1.00 0.00 C ATOM 498 C GLU 100 37.124 20.353 -13.984 1.00 0.00 C ATOM 499 O GLU 100 36.963 21.571 -14.050 1.00 0.00 O ATOM 500 CB GLU 100 35.544 19.387 -12.304 1.00 0.00 C ATOM 501 N VAL 101 37.406 19.602 -15.044 1.00 0.00 N ATOM 502 CA VAL 101 37.538 20.177 -16.377 1.00 0.00 C ATOM 503 C VAL 101 36.855 19.304 -17.423 1.00 0.00 C ATOM 504 O VAL 101 36.632 18.114 -17.202 1.00 0.00 O ATOM 505 CB VAL 101 39.004 20.378 -16.727 1.00 0.00 C ATOM 506 N LYS 102 36.525 19.904 -18.562 1.00 0.00 N ATOM 507 CA LYS 102 35.924 19.168 -19.668 1.00 0.00 C ATOM 508 C LYS 102 36.956 18.304 -20.380 1.00 0.00 C ATOM 509 O LYS 102 38.107 18.705 -20.546 1.00 0.00 O ATOM 510 CB LYS 102 35.265 20.128 -20.648 1.00 0.00 C ATOM 511 N PHE 103 36.536 17.116 -20.802 1.00 0.00 N ATOM 512 CA PHE 103 37.434 16.176 -21.462 1.00 0.00 C ATOM 513 C PHE 103 38.098 16.810 -22.678 1.00 0.00 C ATOM 514 O PHE 103 39.313 16.715 -22.853 1.00 0.00 O ATOM 515 CB PHE 103 36.682 14.916 -21.862 1.00 0.00 C ATOM 516 N GLU 104 37.294 17.457 -23.514 1.00 0.00 N ATOM 517 CA GLU 104 37.800 18.089 -24.727 1.00 0.00 C ATOM 518 C GLU 104 38.801 19.189 -24.398 1.00 0.00 C ATOM 519 O GLU 104 39.854 19.292 -25.029 1.00 0.00 O ATOM 520 CB GLU 104 36.650 18.646 -25.553 1.00 0.00 C ATOM 521 N ASP 105 38.467 20.010 -23.408 1.00 0.00 N ATOM 522 CA ASP 105 39.338 21.103 -22.991 1.00 0.00 C ATOM 523 C ASP 105 40.619 20.575 -22.357 1.00 0.00 C ATOM 524 O ASP 105 41.707 21.092 -22.608 1.00 0.00 O ATOM 525 CB ASP 105 38.608 22.025 -22.028 1.00 0.00 C ATOM 526 N MET 106 40.482 19.541 -21.534 1.00 0.00 N ATOM 527 CA MET 106 41.638 18.836 -20.991 1.00 0.00 C ATOM 528 C MET 106 42.486 18.230 -22.102 1.00 0.00 C ATOM 529 O MET 106 43.715 18.263 -22.045 1.00 0.00 O ATOM 530 CB MET 106 41.191 17.758 -20.016 1.00 0.00 C ATOM 531 N PRO 107 41.822 17.678 -23.112 1.00 0.00 N ATOM 532 CA PRO 107 42.514 17.076 -24.245 1.00 0.00 C ATOM 533 C PRO 107 43.313 18.117 -25.020 1.00 0.00 C ATOM 534 O PRO 107 44.431 17.853 -25.460 1.00 0.00 O ATOM 535 CB PRO 107 41.522 16.377 -25.162 1.00 0.00 C ATOM 536 N ASP 108 42.731 19.301 -25.183 1.00 0.00 N ATOM 537 CA ASP 108 43.383 20.380 -25.913 1.00 0.00 C ATOM 538 C ASP 108 44.533 20.974 -25.109 1.00 0.00 C ATOM 539 O ASP 108 45.624 21.194 -25.636 1.00 0.00 O ATOM 540 CB ASP 108 42.375 21.460 -26.275 1.00 0.00 C ATOM 541 N SER 109 44.283 21.231 -23.829 1.00 0.00 N ATOM 542 CA SER 109 45.318 21.728 -22.931 1.00 0.00 C ATOM 543 C SER 109 46.456 20.725 -22.793 1.00 0.00 C ATOM 544 O SER 109 47.621 21.104 -22.680 1.00 0.00 O ATOM 545 CB SER 109 44.727 22.053 -21.569 1.00 0.00 C ATOM 546 N VAL 110 46.111 19.441 -22.803 1.00 0.00 N ATOM 547 CA VAL 110 47.105 18.380 -22.697 1.00 0.00 C ATOM 548 C VAL 110 48.084 18.424 -23.864 1.00 0.00 C ATOM 549 O VAL 110 49.295 18.312 -23.675 1.00 0.00 O ATOM 550 CB VAL 110 46.424 17.022 -22.626 1.00 0.00 C ATOM 551 N GLN 111 47.552 18.590 -25.070 1.00 0.00 N ATOM 552 CA GLN 111 48.375 18.612 -26.273 1.00 0.00 C ATOM 553 C GLN 111 49.297 19.825 -26.288 1.00 0.00 C ATOM 554 O GLN 111 50.479 19.714 -26.611 1.00 0.00 O ATOM 555 CB GLN 111 47.498 18.597 -27.516 1.00 0.00 C ATOM 556 N SER 112 48.749 20.983 -25.936 1.00 0.00 N ATOM 557 CA SER 112 49.520 22.220 -25.912 1.00 0.00 C ATOM 558 C SER 112 50.710 22.108 -24.968 1.00 0.00 C ATOM 559 O SER 112 51.827 22.494 -25.314 1.00 0.00 O ATOM 560 CB SER 112 48.634 23.390 -25.514 1.00 0.00 C ATOM 561 N LYS 113 50.466 21.578 -23.775 1.00 0.00 N ATOM 562 CA LYS 113 51.481 21.545 -22.728 1.00 0.00 C ATOM 563 C LYS 113 52.658 20.666 -23.131 1.00 0.00 C ATOM 564 O LYS 113 53.816 21.050 -22.966 1.00 0.00 O ATOM 565 CB LYS 113 50.877 21.059 -21.419 1.00 0.00 C ATOM 566 N LEU 114 52.355 19.485 -23.659 1.00 0.00 N ATOM 567 CA LEU 114 53.389 18.545 -24.077 1.00 0.00 C ATOM 568 C LEU 114 54.344 19.186 -25.075 1.00 0.00 C ATOM 569 O LEU 114 55.553 18.958 -25.026 1.00 0.00 O ATOM 570 CB LEU 114 52.759 17.295 -24.671 1.00 0.00 C ATOM 571 N LYS 115 53.796 19.989 -25.980 1.00 0.00 N ATOM 572 CA LYS 115 54.597 20.652 -27.002 1.00 0.00 C ATOM 573 C LYS 115 55.727 21.461 -26.379 1.00 0.00 C ATOM 574 O LYS 115 55.507 22.239 -25.451 1.00 0.00 O ATOM 575 CB LYS 115 55.719 21.453 -26.360 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 393 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 46.57 72.2 158 100.0 158 ARMSMC SECONDARY STRUCTURE . . 37.76 79.6 98 100.0 98 ARMSMC SURFACE . . . . . . . . 53.69 64.7 102 100.0 102 ARMSMC BURIED . . . . . . . . 29.47 85.7 56 100.0 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.62 (Number of atoms: 80) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.62 80 100.0 80 CRMSCA CRN = ALL/NP . . . . . 0.0452 CRMSCA SECONDARY STRUCTURE . . 3.12 49 100.0 49 CRMSCA SURFACE . . . . . . . . 4.05 52 100.0 52 CRMSCA BURIED . . . . . . . . 2.65 28 100.0 28 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.81 393 100.0 393 CRMSMC SECONDARY STRUCTURE . . 3.35 243 100.0 243 CRMSMC SURFACE . . . . . . . . 4.24 256 100.0 256 CRMSMC BURIED . . . . . . . . 2.83 137 100.0 137 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.06 73 22.7 321 CRMSSC RELIABLE SIDE CHAINS . 4.06 73 26.4 277 CRMSSC SECONDARY STRUCTURE . . 3.43 47 21.5 219 CRMSSC SURFACE . . . . . . . . 4.62 48 22.2 216 CRMSSC BURIED . . . . . . . . 2.67 25 23.8 105 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.81 393 61.3 641 CRMSALL SECONDARY STRUCTURE . . 3.35 243 58.6 415 CRMSALL SURFACE . . . . . . . . 4.24 256 60.4 424 CRMSALL BURIED . . . . . . . . 2.83 137 63.1 217 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.723 1.000 0.500 80 100.0 80 ERRCA SECONDARY STRUCTURE . . 2.198 1.000 0.500 49 100.0 49 ERRCA SURFACE . . . . . . . . 3.172 1.000 0.500 52 100.0 52 ERRCA BURIED . . . . . . . . 1.889 1.000 0.500 28 100.0 28 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.822 1.000 0.500 393 100.0 393 ERRMC SECONDARY STRUCTURE . . 2.328 1.000 0.500 243 100.0 243 ERRMC SURFACE . . . . . . . . 3.295 1.000 0.500 256 100.0 256 ERRMC BURIED . . . . . . . . 1.939 1.000 0.500 137 100.0 137 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.050 1.000 0.500 73 22.7 321 ERRSC RELIABLE SIDE CHAINS . 3.050 1.000 0.500 73 26.4 277 ERRSC SECONDARY STRUCTURE . . 2.484 1.000 0.500 47 21.5 219 ERRSC SURFACE . . . . . . . . 3.611 1.000 0.500 48 22.2 216 ERRSC BURIED . . . . . . . . 1.973 1.000 0.500 25 23.8 105 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.822 1.000 0.500 393 61.3 641 ERRALL SECONDARY STRUCTURE . . 2.328 1.000 0.500 243 58.6 415 ERRALL SURFACE . . . . . . . . 3.295 1.000 0.500 256 60.4 424 ERRALL BURIED . . . . . . . . 1.939 1.000 0.500 137 63.1 217 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 39 56 70 78 80 80 DISTCA CA (P) 20.00 48.75 70.00 87.50 97.50 80 DISTCA CA (RMS) 0.80 1.23 1.65 2.29 3.12 DISTCA ALL (N) 70 194 274 340 381 393 641 DISTALL ALL (P) 10.92 30.27 42.75 53.04 59.44 641 DISTALL ALL (RMS) 0.79 1.28 1.69 2.30 3.12 DISTALL END of the results output