####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 80 ( 393), selected 80 , name T0530TS028_1-D1 # Molecule2: number of CA atoms 80 ( 641), selected 80 , name T0530-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0530TS028_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 80 36 - 115 3.37 3.37 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 56 36 - 91 1.96 3.47 LONGEST_CONTINUOUS_SEGMENT: 56 37 - 92 1.98 3.47 LCS_AVERAGE: 63.52 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 57 - 74 0.98 3.68 LONGEST_CONTINUOUS_SEGMENT: 18 66 - 83 0.96 3.88 LONGEST_CONTINUOUS_SEGMENT: 18 67 - 84 0.98 3.84 LONGEST_CONTINUOUS_SEGMENT: 18 68 - 85 0.98 3.79 LCS_AVERAGE: 15.95 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 80 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 36 H 36 12 56 80 9 25 39 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Q 37 Q 37 12 56 80 9 26 42 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Q 38 Q 38 12 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT D 39 D 39 12 56 80 7 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 40 V 40 12 56 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Y 41 Y 41 12 56 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 42 V 42 12 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Q 43 Q 43 12 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT I 44 I 44 12 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT D 45 D 45 12 56 80 11 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT R 46 R 46 12 56 80 7 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT D 47 D 47 12 56 80 3 20 40 51 60 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 48 G 48 3 56 80 3 4 4 11 31 54 65 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT R 49 R 49 4 56 80 10 23 41 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT H 50 H 50 5 56 80 9 24 40 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT L 51 L 51 5 56 80 3 4 6 12 34 46 59 69 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT S 52 S 52 5 56 80 3 7 18 28 38 54 63 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT P 53 P 53 7 56 80 2 4 9 26 39 54 65 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 54 G 54 10 56 80 4 13 28 43 56 63 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 55 G 55 10 56 80 10 25 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT T 56 T 56 10 56 80 9 25 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 57 E 57 18 56 80 10 25 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Y 58 Y 58 18 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT T 59 T 59 18 56 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT L 60 L 60 18 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT D 61 D 61 18 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 62 G 62 18 56 80 10 23 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Y 63 Y 63 18 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT N 64 N 64 18 56 80 7 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT A 65 A 65 18 56 80 5 23 41 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT S 66 S 66 18 56 80 5 26 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 67 G 67 18 56 80 5 26 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 68 K 68 18 56 80 7 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 69 K 69 18 56 80 7 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 70 E 70 18 56 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 71 E 71 18 56 80 7 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 72 V 72 18 56 80 7 24 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT T 73 T 73 18 56 80 9 27 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT F 74 F 74 18 56 80 9 28 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT F 75 F 75 18 56 80 10 23 41 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT A 76 A 76 18 56 80 9 23 39 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 77 G 77 18 56 80 9 22 39 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 78 K 78 18 56 80 6 26 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 79 E 79 18 56 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT L 80 L 80 18 56 80 5 26 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT R 81 R 81 18 56 80 10 22 40 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 82 K 82 18 56 80 3 23 40 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT N 83 N 83 18 56 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT A 84 A 84 18 56 80 12 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Y 85 Y 85 18 56 80 12 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT L 86 L 86 14 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 87 K 87 14 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 88 V 88 14 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 89 K 89 14 56 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT A 90 A 90 14 56 80 9 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 91 K 91 14 56 80 8 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT G 92 G 92 6 56 80 3 5 10 31 47 61 66 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 93 K 93 6 53 80 3 6 11 15 27 33 55 65 69 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Y 94 Y 94 6 53 80 3 12 40 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 95 V 95 6 53 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 96 E 96 6 53 80 8 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT T 97 T 97 10 53 80 10 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT W 98 W 98 10 53 80 5 22 40 51 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 99 E 99 10 53 80 4 11 36 51 60 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 100 E 100 10 53 80 4 27 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 101 V 101 10 53 80 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT K 102 K 102 10 53 80 7 25 42 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT F 103 F 103 10 53 80 7 13 38 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT E 104 E 104 10 53 80 7 13 28 50 60 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT D 105 D 105 10 53 80 7 13 35 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT M 106 M 106 10 53 80 5 13 28 50 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT P 107 P 107 10 53 80 8 9 9 14 21 31 55 60 67 69 71 74 76 77 78 78 79 79 79 79 LCS_GDT D 108 D 108 9 15 80 8 9 9 30 53 64 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT S 109 S 109 9 9 80 8 9 9 10 12 15 59 62 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT V 110 V 110 9 9 80 8 15 39 52 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT Q 111 Q 111 9 9 80 8 9 9 10 43 47 63 68 72 74 75 76 77 77 78 78 79 79 79 79 LCS_GDT S 112 S 112 9 9 80 8 9 9 10 11 16 30 41 57 67 74 76 77 77 78 78 79 79 79 79 LCS_GDT K 113 K 113 9 9 80 8 9 9 10 11 16 20 29 38 49 65 74 77 77 78 78 79 79 79 79 LCS_GDT L 114 L 114 9 9 80 8 9 9 10 10 11 13 16 38 41 54 63 67 74 77 78 79 79 79 79 LCS_GDT K 115 K 115 9 9 80 3 9 9 10 10 11 13 16 19 26 32 39 58 64 72 73 75 76 77 79 LCS_AVERAGE LCS_A: 59.82 ( 15.95 63.52 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 30 42 53 62 65 67 70 73 74 75 76 77 77 78 78 79 79 79 79 GDT PERCENT_AT 16.25 37.50 52.50 66.25 77.50 81.25 83.75 87.50 91.25 92.50 93.75 95.00 96.25 96.25 97.50 97.50 98.75 98.75 98.75 98.75 GDT RMS_LOCAL 0.39 0.67 0.94 1.23 1.46 1.54 1.66 1.93 2.23 2.28 2.36 2.52 2.70 2.62 2.80 2.80 3.03 3.03 3.03 3.03 GDT RMS_ALL_AT 3.57 3.77 3.72 3.57 3.61 3.65 3.63 3.54 3.48 3.46 3.45 3.42 3.39 3.44 3.41 3.41 3.39 3.39 3.39 3.39 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 36 H 36 2.126 5 0.169 0.175 2.651 66.905 33.238 LGA Q 37 Q 37 1.568 4 0.062 0.064 1.781 75.000 41.429 LGA Q 38 Q 38 0.628 4 0.083 0.109 1.115 85.952 48.254 LGA D 39 D 39 1.374 3 0.056 0.057 1.808 83.690 50.952 LGA V 40 V 40 1.105 2 0.039 0.044 1.252 81.429 58.163 LGA Y 41 Y 41 1.030 7 0.150 0.171 1.221 83.690 34.683 LGA V 42 V 42 0.762 2 0.018 0.023 1.019 90.476 63.333 LGA Q 43 Q 43 0.682 4 0.045 0.046 0.838 92.857 51.323 LGA I 44 I 44 0.629 3 0.026 0.052 0.704 90.476 56.548 LGA D 45 D 45 0.667 3 0.283 0.288 2.563 79.881 49.048 LGA R 46 R 46 1.480 6 0.146 0.171 1.703 79.405 36.277 LGA D 47 D 47 2.932 3 0.089 0.142 5.209 55.595 31.071 LGA G 48 G 48 4.058 0 0.662 0.662 4.058 50.357 50.357 LGA R 49 R 49 1.815 6 0.240 0.256 2.676 72.976 31.732 LGA H 50 H 50 1.774 5 0.094 0.120 4.851 55.119 30.190 LGA L 51 L 51 6.307 3 0.601 0.562 9.264 15.000 8.750 LGA S 52 S 52 6.143 1 0.206 0.290 7.271 15.476 14.683 LGA P 53 P 53 5.789 2 0.051 0.063 7.200 21.071 13.946 LGA G 54 G 54 3.402 0 0.701 0.701 3.584 50.119 50.119 LGA G 55 G 55 1.223 0 0.084 0.084 1.836 79.286 79.286 LGA T 56 T 56 0.981 2 0.100 0.124 1.280 83.690 60.748 LGA E 57 E 57 1.156 4 0.050 0.046 1.551 85.952 46.296 LGA Y 58 Y 58 0.486 7 0.217 0.233 0.955 95.238 39.286 LGA T 59 T 59 0.516 2 0.042 0.052 0.757 95.238 67.347 LGA L 60 L 60 0.371 3 0.060 0.099 0.540 100.000 61.310 LGA D 61 D 61 0.887 3 0.086 0.092 1.420 85.952 53.155 LGA G 62 G 62 1.910 0 0.172 0.172 1.910 75.000 75.000 LGA Y 63 Y 63 0.110 7 0.121 0.146 0.845 95.238 39.286 LGA N 64 N 64 1.038 3 0.047 0.112 1.632 81.548 50.952 LGA A 65 A 65 2.264 0 0.041 0.056 3.001 63.095 61.905 LGA S 66 S 66 2.366 1 0.206 0.204 2.529 64.762 52.698 LGA G 67 G 67 2.199 0 0.079 0.079 2.282 66.786 66.786 LGA K 68 K 68 1.484 4 0.127 0.183 1.613 79.286 44.286 LGA K 69 K 69 1.370 4 0.091 0.118 1.742 77.143 43.333 LGA E 70 E 70 1.173 4 0.077 0.086 1.349 81.429 45.238 LGA E 71 E 71 1.209 4 0.084 0.081 1.628 79.286 44.286 LGA V 72 V 72 1.518 2 0.026 0.033 1.952 83.810 58.299 LGA T 73 T 73 0.895 2 0.076 0.071 2.033 79.524 55.850 LGA F 74 F 74 0.748 6 0.126 0.170 0.847 92.857 41.991 LGA F 75 F 75 1.555 6 0.035 0.034 2.541 68.929 30.952 LGA A 76 A 76 1.883 0 0.034 0.035 1.897 75.000 74.571 LGA G 77 G 77 2.049 0 0.245 0.245 2.296 66.786 66.786 LGA K 78 K 78 1.303 4 0.038 0.043 1.777 79.286 43.333 LGA E 79 E 79 1.379 4 0.053 0.054 1.626 77.143 43.333 LGA L 80 L 80 2.110 3 0.074 0.106 2.299 66.786 41.488 LGA R 81 R 81 2.671 6 0.036 0.036 2.961 62.857 28.052 LGA K 82 K 82 2.345 4 0.073 0.097 2.582 68.810 36.931 LGA N 83 N 83 0.644 3 0.112 0.103 1.249 88.214 54.286 LGA A 84 A 84 1.219 0 0.050 0.071 1.668 83.690 81.524 LGA Y 85 Y 85 1.122 7 0.132 0.167 1.716 79.286 33.214 LGA L 86 L 86 0.427 3 0.100 0.116 0.525 97.619 61.310 LGA K 87 K 87 0.689 4 0.051 0.055 0.957 90.476 50.265 LGA V 88 V 88 0.919 2 0.043 0.057 1.090 88.214 63.333 LGA K 89 K 89 0.616 4 0.081 0.117 1.553 86.071 48.307 LGA A 90 A 90 1.022 0 0.055 0.062 1.708 90.595 87.048 LGA K 91 K 91 0.588 4 0.271 0.389 1.300 92.976 50.370 LGA G 92 G 92 4.451 0 0.429 0.429 5.994 33.690 33.690 LGA K 93 K 93 5.899 4 0.099 0.103 8.169 34.048 15.661 LGA Y 94 Y 94 1.753 7 0.617 0.561 3.264 68.929 27.143 LGA V 95 V 95 0.773 2 0.159 0.166 0.971 90.476 65.986 LGA E 96 E 96 0.684 4 0.049 0.059 1.244 90.476 49.259 LGA T 97 T 97 1.385 2 0.009 0.039 2.013 75.119 54.558 LGA W 98 W 98 2.724 9 0.083 0.097 3.062 60.952 20.986 LGA E 99 E 99 3.050 4 0.106 0.108 3.172 53.571 29.365 LGA E 100 E 100 1.829 4 0.028 0.032 2.335 75.119 40.582 LGA V 101 V 101 0.528 2 0.043 0.062 1.049 92.857 64.694 LGA K 102 K 102 1.189 4 0.032 0.048 1.761 79.405 44.339 LGA F 103 F 103 2.391 6 0.033 0.041 2.860 60.952 27.359 LGA E 104 E 104 2.930 4 0.180 0.196 3.357 55.357 30.952 LGA D 105 D 105 2.497 3 0.198 0.213 3.127 57.262 36.726 LGA M 106 M 106 2.617 3 0.629 0.616 3.492 55.476 34.881 LGA P 107 P 107 6.339 2 0.594 0.597 8.831 32.619 19.048 LGA D 108 D 108 3.838 3 0.050 0.049 5.564 37.262 21.310 LGA S 109 S 109 6.123 1 0.073 0.095 7.931 24.048 17.222 LGA V 110 V 110 2.159 2 0.045 0.045 5.172 47.857 36.599 LGA Q 111 Q 111 4.928 4 0.042 0.039 8.465 24.881 15.185 LGA S 112 S 112 8.691 1 0.033 0.046 11.838 5.119 3.651 LGA K 113 K 113 9.942 4 0.093 0.103 12.679 0.833 0.899 LGA L 114 L 114 11.422 3 0.159 0.169 15.604 0.119 0.060 LGA K 115 K 115 15.018 5 0.055 0.941 17.840 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 80 320 320 100.00 641 393 61.31 80 SUMMARY(RMSD_GDC): 3.374 3.520 3.569 67.622 42.834 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 80 80 4.0 70 1.93 72.188 74.300 3.453 LGA_LOCAL RMSD: 1.927 Number of atoms: 70 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.544 Number of assigned atoms: 80 Std_ASGN_ATOMS RMSD: 3.374 Standard rmsd on all 80 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.474897 * X + 0.871424 * Y + -0.122855 * Z + 31.873394 Y_new = 0.868996 * X + 0.442297 * Y + -0.221855 * Z + 12.477176 Z_new = -0.138991 * X + -0.212119 * Y + -0.967309 * Z + 16.585794 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.070940 0.139443 -2.925722 [DEG: 118.6562 7.9895 -167.6315 ] ZXZ: -0.505727 2.885193 -2.561534 [DEG: -28.9760 165.3094 -146.7651 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0530TS028_1-D1 REMARK 2: T0530-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0530TS028_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 80 80 4.0 70 1.93 74.300 3.37 REMARK ---------------------------------------------------------- MOLECULE T0530TS028_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0530 REMARK MODEL 1 REMARK PARENT N/A ATOM 176 N HIS 36 56.103 23.860 -4.193 1.00 0.00 N ATOM 177 CA HIS 36 56.071 23.013 -5.381 1.00 0.00 C ATOM 178 C HIS 36 54.685 22.422 -5.600 1.00 0.00 C ATOM 179 O HIS 36 54.410 21.291 -5.201 1.00 0.00 O ATOM 180 CB HIS 36 57.109 21.906 -5.269 1.00 0.00 C ATOM 181 N GLN 37 53.813 23.196 -6.238 1.00 0.00 N ATOM 182 CA GLN 37 52.458 22.743 -6.531 1.00 0.00 C ATOM 183 C GLN 37 52.452 21.717 -7.657 1.00 0.00 C ATOM 184 O GLN 37 52.947 21.981 -8.753 1.00 0.00 O ATOM 185 CB GLN 37 51.569 23.925 -6.884 1.00 0.00 C ATOM 186 N GLN 38 51.889 20.545 -7.380 1.00 0.00 N ATOM 187 CA GLN 38 51.854 19.463 -8.356 1.00 0.00 C ATOM 188 C GLN 38 50.529 19.442 -9.107 1.00 0.00 C ATOM 189 O GLN 38 49.471 19.685 -8.527 1.00 0.00 O ATOM 190 CB GLN 38 52.099 18.127 -7.674 1.00 0.00 C ATOM 191 N ASP 39 50.594 19.149 -10.402 1.00 0.00 N ATOM 192 CA ASP 39 49.397 19.069 -11.230 1.00 0.00 C ATOM 193 C ASP 39 49.318 17.733 -11.958 1.00 0.00 C ATOM 194 O ASP 39 50.224 17.371 -12.709 1.00 0.00 O ATOM 195 CB ASP 39 49.360 20.220 -12.224 1.00 0.00 C ATOM 196 N VAL 40 48.232 17.003 -11.730 1.00 0.00 N ATOM 197 CA VAL 40 48.041 15.699 -12.353 1.00 0.00 C ATOM 198 C VAL 40 46.734 15.649 -13.135 1.00 0.00 C ATOM 199 O VAL 40 45.654 15.828 -12.571 1.00 0.00 O ATOM 200 CB VAL 40 48.075 14.600 -11.302 1.00 0.00 C ATOM 201 N TYR 41 46.839 15.404 -14.436 1.00 0.00 N ATOM 202 CA TYR 41 45.663 15.281 -15.289 1.00 0.00 C ATOM 203 C TYR 41 45.208 13.830 -15.394 1.00 0.00 C ATOM 204 O TYR 41 45.810 13.031 -16.110 1.00 0.00 O ATOM 205 CB TYR 41 45.948 15.850 -16.671 1.00 0.00 C ATOM 206 N VAL 42 44.140 13.497 -14.677 1.00 0.00 N ATOM 207 CA VAL 42 43.644 12.127 -14.632 1.00 0.00 C ATOM 208 C VAL 42 42.270 12.018 -15.279 1.00 0.00 C ATOM 209 O VAL 42 41.549 13.009 -15.401 1.00 0.00 O ATOM 210 CB VAL 42 43.597 11.627 -13.196 1.00 0.00 C ATOM 211 N GLN 43 41.911 10.808 -15.694 1.00 0.00 N ATOM 212 CA GLN 43 40.595 10.554 -16.268 1.00 0.00 C ATOM 213 C GLN 43 39.864 9.457 -15.503 1.00 0.00 C ATOM 214 O GLN 43 40.424 8.394 -15.235 1.00 0.00 O ATOM 215 CB GLN 43 40.719 10.184 -17.738 1.00 0.00 C ATOM 216 N ILE 44 38.609 9.723 -15.153 1.00 0.00 N ATOM 217 CA ILE 44 37.843 8.818 -14.307 1.00 0.00 C ATOM 218 C ILE 44 37.348 7.611 -15.095 1.00 0.00 C ATOM 219 O ILE 44 36.229 7.608 -15.608 1.00 0.00 O ATOM 220 CB ILE 44 36.673 9.552 -13.669 1.00 0.00 C ATOM 221 N ASP 45 38.191 6.588 -15.190 1.00 0.00 N ATOM 222 CA ASP 45 37.797 5.326 -15.805 1.00 0.00 C ATOM 223 C ASP 45 36.948 4.491 -14.855 1.00 0.00 C ATOM 224 O ASP 45 35.951 3.894 -15.260 1.00 0.00 O ATOM 225 CB ASP 45 39.025 4.546 -16.247 1.00 0.00 C ATOM 226 N ARG 46 37.350 4.453 -13.588 1.00 0.00 N ATOM 227 CA ARG 46 36.695 3.604 -12.602 1.00 0.00 C ATOM 228 C ARG 46 35.762 4.413 -11.711 1.00 0.00 C ATOM 229 O ARG 46 36.180 5.377 -11.071 1.00 0.00 O ATOM 230 CB ARG 46 37.730 2.871 -11.762 1.00 0.00 C ATOM 231 N ASP 47 34.494 4.015 -11.675 1.00 0.00 N ATOM 232 CA ASP 47 33.487 4.735 -10.905 1.00 0.00 C ATOM 233 C ASP 47 32.655 3.782 -10.056 1.00 0.00 C ATOM 234 O ASP 47 32.696 2.567 -10.251 1.00 0.00 O ATOM 235 CB ASP 47 32.590 5.543 -11.831 1.00 0.00 C ATOM 236 N GLY 48 31.904 4.340 -9.114 1.00 0.00 N ATOM 237 CA GLY 48 30.963 3.557 -8.322 1.00 0.00 C ATOM 238 C GLY 48 31.687 2.724 -7.272 1.00 0.00 C ATOM 239 O GLY 48 31.120 1.785 -6.712 1.00 0.00 O ATOM 241 N ARG 49 32.942 3.072 -7.009 1.00 0.00 N ATOM 242 CA ARG 49 33.753 2.341 -6.043 1.00 0.00 C ATOM 243 C ARG 49 33.318 2.646 -4.616 1.00 0.00 C ATOM 244 O ARG 49 33.912 3.488 -3.941 1.00 0.00 O ATOM 245 CB ARG 49 35.226 2.669 -6.232 1.00 0.00 C ATOM 246 N HIS 50 32.278 1.958 -4.159 1.00 0.00 N ATOM 247 CA HIS 50 31.780 2.132 -2.800 1.00 0.00 C ATOM 248 C HIS 50 31.306 0.808 -2.214 1.00 0.00 C ATOM 249 O HIS 50 30.419 0.156 -2.766 1.00 0.00 O ATOM 250 CB HIS 50 30.657 3.158 -2.773 1.00 0.00 C ATOM 251 N LEU 51 31.901 0.416 -1.092 1.00 0.00 N ATOM 252 CA LEU 51 31.511 -0.809 -0.406 1.00 0.00 C ATOM 253 C LEU 51 30.087 -0.711 0.130 1.00 0.00 C ATOM 254 O LEU 51 29.322 -1.672 0.064 1.00 0.00 O ATOM 255 CB LEU 51 32.483 -1.117 0.722 1.00 0.00 C ATOM 256 N SER 52 29.740 0.457 0.660 1.00 0.00 N ATOM 257 CA SER 52 28.420 0.670 1.242 1.00 0.00 C ATOM 258 C SER 52 28.068 2.152 1.280 1.00 0.00 C ATOM 259 O SER 52 28.610 2.948 0.512 1.00 0.00 O ATOM 260 CB SER 52 28.353 0.072 2.639 1.00 0.00 C ATOM 261 N PRO 53 27.156 2.516 2.175 1.00 0.00 N ATOM 262 CA PRO 53 26.855 3.919 2.434 1.00 0.00 C ATOM 263 C PRO 53 28.083 4.661 2.943 1.00 0.00 C ATOM 264 O PRO 53 28.616 4.343 4.006 1.00 0.00 O ATOM 265 CB PRO 53 25.710 4.039 3.428 1.00 0.00 C ATOM 266 N GLY 54 28.529 5.652 2.179 1.00 0.00 N ATOM 267 CA GLY 54 29.766 6.359 2.485 1.00 0.00 C ATOM 268 C GLY 54 30.370 6.981 1.232 1.00 0.00 C ATOM 269 O GLY 54 29.663 7.262 0.264 1.00 0.00 O ATOM 271 N GLY 55 31.681 7.194 1.255 1.00 0.00 N ATOM 272 CA GLY 55 32.368 7.866 0.160 1.00 0.00 C ATOM 273 C GLY 55 32.733 6.885 -0.946 1.00 0.00 C ATOM 274 O GLY 55 32.525 5.679 -0.813 1.00 0.00 O ATOM 276 N THR 56 33.278 7.409 -2.039 1.00 0.00 N ATOM 277 CA THR 56 33.663 6.581 -3.176 1.00 0.00 C ATOM 278 C THR 56 35.164 6.643 -3.419 1.00 0.00 C ATOM 279 O THR 56 35.810 7.649 -3.125 1.00 0.00 O ATOM 280 CB THR 56 32.903 7.007 -4.423 1.00 0.00 C ATOM 281 N GLU 57 35.718 5.562 -3.958 1.00 0.00 N ATOM 282 CA GLU 57 37.155 5.467 -4.182 1.00 0.00 C ATOM 283 C GLU 57 37.495 5.638 -5.657 1.00 0.00 C ATOM 284 O GLU 57 36.905 4.987 -6.519 1.00 0.00 O ATOM 285 CB GLU 57 37.685 4.138 -3.664 1.00 0.00 C ATOM 286 N TYR 58 38.450 6.517 -5.940 1.00 0.00 N ATOM 287 CA TYR 58 38.932 6.712 -7.302 1.00 0.00 C ATOM 288 C TYR 58 40.437 6.496 -7.390 1.00 0.00 C ATOM 289 O TYR 58 41.221 7.392 -7.076 1.00 0.00 O ATOM 290 CB TYR 58 38.563 8.100 -7.801 1.00 0.00 C ATOM 291 N THR 59 40.835 5.303 -7.818 1.00 0.00 N ATOM 292 CA THR 59 42.247 4.983 -7.990 1.00 0.00 C ATOM 293 C THR 59 42.624 4.926 -9.464 1.00 0.00 C ATOM 294 O THR 59 42.079 4.125 -10.224 1.00 0.00 O ATOM 295 CB THR 59 42.578 3.666 -7.305 1.00 0.00 C ATOM 296 N LEU 60 43.561 5.780 -9.864 1.00 0.00 N ATOM 297 CA LEU 60 43.934 5.907 -11.268 1.00 0.00 C ATOM 298 C LEU 60 45.354 6.436 -11.414 1.00 0.00 C ATOM 299 O LEU 60 45.953 6.912 -10.449 1.00 0.00 O ATOM 300 CB LEU 60 42.952 6.809 -11.999 1.00 0.00 C ATOM 301 N ASP 61 45.889 6.351 -12.628 1.00 0.00 N ATOM 302 CA ASP 61 47.225 6.864 -12.913 1.00 0.00 C ATOM 303 C ASP 61 47.179 8.341 -13.281 1.00 0.00 C ATOM 304 O ASP 61 46.456 8.742 -14.193 1.00 0.00 O ATOM 305 CB ASP 61 47.874 6.058 -14.028 1.00 0.00 C ATOM 306 N GLY 62 47.957 9.147 -12.566 1.00 0.00 N ATOM 307 CA GLY 62 47.958 10.591 -12.770 1.00 0.00 C ATOM 308 C GLY 62 49.111 11.020 -13.668 1.00 0.00 C ATOM 309 O GLY 62 50.207 10.464 -13.596 1.00 0.00 O ATOM 311 N TYR 63 48.858 12.013 -14.513 1.00 0.00 N ATOM 312 CA TYR 63 49.860 12.487 -15.461 1.00 0.00 C ATOM 313 C TYR 63 50.286 13.914 -15.143 1.00 0.00 C ATOM 314 O TYR 63 49.483 14.844 -15.222 1.00 0.00 O ATOM 315 CB TYR 63 49.332 12.393 -16.884 1.00 0.00 C ATOM 316 N ASN 64 51.554 14.083 -14.785 1.00 0.00 N ATOM 317 CA ASN 64 52.084 15.394 -14.433 1.00 0.00 C ATOM 318 C ASN 64 52.574 16.140 -15.667 1.00 0.00 C ATOM 319 O ASN 64 52.615 15.583 -16.765 1.00 0.00 O ATOM 320 CB ASN 64 53.205 15.258 -13.414 1.00 0.00 C ATOM 321 N ALA 65 52.944 17.403 -15.482 1.00 0.00 N ATOM 322 CA ALA 65 53.481 18.211 -16.570 1.00 0.00 C ATOM 323 C ALA 65 54.777 17.619 -17.109 1.00 0.00 C ATOM 324 O ALA 65 55.059 17.704 -18.305 1.00 0.00 O ATOM 325 CB ALA 65 53.703 19.643 -16.107 1.00 0.00 C ATOM 326 N SER 66 55.561 17.017 -16.222 1.00 0.00 N ATOM 327 CA SER 66 56.848 16.446 -16.600 1.00 0.00 C ATOM 328 C SER 66 56.669 15.265 -17.546 1.00 0.00 C ATOM 329 O SER 66 57.534 14.984 -18.375 1.00 0.00 O ATOM 330 CB SER 66 57.624 16.023 -15.363 1.00 0.00 C ATOM 331 N GLY 67 55.541 14.576 -17.417 1.00 0.00 N ATOM 332 CA GLY 67 55.271 13.390 -18.221 1.00 0.00 C ATOM 333 C GLY 67 55.537 12.116 -17.431 1.00 0.00 C ATOM 334 O GLY 67 55.800 11.060 -18.007 1.00 0.00 O ATOM 336 N LYS 68 55.470 12.220 -16.108 1.00 0.00 N ATOM 337 CA LYS 68 55.676 11.070 -15.237 1.00 0.00 C ATOM 338 C LYS 68 54.366 10.342 -14.965 1.00 0.00 C ATOM 339 O LYS 68 53.289 10.835 -15.303 1.00 0.00 O ATOM 340 CB LYS 68 56.324 11.503 -13.931 1.00 0.00 C ATOM 341 N LYS 69 54.463 9.167 -14.354 1.00 0.00 N ATOM 342 CA LYS 69 53.284 8.382 -14.009 1.00 0.00 C ATOM 343 C LYS 69 53.146 8.229 -12.500 1.00 0.00 C ATOM 344 O LYS 69 54.016 7.659 -11.842 1.00 0.00 O ATOM 345 CB LYS 69 53.340 7.019 -14.680 1.00 0.00 C ATOM 346 N GLU 70 52.046 8.741 -11.957 1.00 0.00 N ATOM 347 CA GLU 70 51.831 8.735 -10.515 1.00 0.00 C ATOM 348 C GLU 70 50.595 7.925 -10.145 1.00 0.00 C ATOM 349 O GLU 70 49.556 8.027 -10.800 1.00 0.00 O ATOM 350 CB GLU 70 51.711 10.157 -9.990 1.00 0.00 C ATOM 351 N GLU 71 50.712 7.120 -9.095 1.00 0.00 N ATOM 352 CA GLU 71 49.582 6.351 -8.589 1.00 0.00 C ATOM 353 C GLU 71 48.972 7.012 -7.358 1.00 0.00 C ATOM 354 O GLU 71 49.650 7.215 -6.352 1.00 0.00 O ATOM 355 CB GLU 71 50.009 4.927 -8.271 1.00 0.00 C ATOM 356 N VAL 72 47.689 7.345 -7.446 1.00 0.00 N ATOM 357 CA VAL 72 46.992 8.006 -6.348 1.00 0.00 C ATOM 358 C VAL 72 45.542 7.546 -6.262 1.00 0.00 C ATOM 359 O VAL 72 44.878 7.357 -7.281 1.00 0.00 O ATOM 360 CB VAL 72 47.063 9.516 -6.507 1.00 0.00 C ATOM 361 N THR 73 45.056 7.366 -5.039 1.00 0.00 N ATOM 362 CA THR 73 43.650 7.058 -4.811 1.00 0.00 C ATOM 363 C THR 73 43.009 8.069 -3.868 1.00 0.00 C ATOM 364 O THR 73 43.390 8.174 -2.703 1.00 0.00 O ATOM 365 CB THR 73 43.499 5.648 -4.261 1.00 0.00 C ATOM 366 N PHE 74 42.034 8.812 -4.380 1.00 0.00 N ATOM 367 CA PHE 74 41.341 9.820 -3.586 1.00 0.00 C ATOM 368 C PHE 74 39.858 9.495 -3.455 1.00 0.00 C ATOM 369 O PHE 74 39.204 9.130 -4.431 1.00 0.00 O ATOM 370 CB PHE 74 41.531 11.198 -4.197 1.00 0.00 C ATOM 371 N PHE 75 39.333 9.630 -2.242 1.00 0.00 N ATOM 372 CA PHE 75 37.931 9.331 -1.976 1.00 0.00 C ATOM 373 C PHE 75 37.141 10.601 -1.694 1.00 0.00 C ATOM 374 O PHE 75 37.606 11.486 -0.975 1.00 0.00 O ATOM 375 CB PHE 75 37.808 8.357 -0.814 1.00 0.00 C ATOM 376 N ALA 76 35.943 10.687 -2.263 1.00 0.00 N ATOM 377 CA ALA 76 35.094 11.859 -2.089 1.00 0.00 C ATOM 378 C ALA 76 33.727 11.471 -1.539 1.00 0.00 C ATOM 379 O ALA 76 33.227 10.379 -1.806 1.00 0.00 O ATOM 380 CB ALA 76 34.947 12.607 -3.405 1.00 0.00 C ATOM 381 N GLY 77 33.126 12.374 -0.772 1.00 0.00 N ATOM 382 CA GLY 77 31.799 12.143 -0.212 1.00 0.00 C ATOM 383 C GLY 77 30.780 11.868 -1.310 1.00 0.00 C ATOM 384 O GLY 77 29.916 11.003 -1.165 1.00 0.00 O ATOM 386 N LYS 78 30.885 12.608 -2.408 1.00 0.00 N ATOM 387 CA LYS 78 29.948 12.474 -3.516 1.00 0.00 C ATOM 388 C LYS 78 30.613 11.829 -4.725 1.00 0.00 C ATOM 389 O LYS 78 31.835 11.857 -4.863 1.00 0.00 O ATOM 390 CB LYS 78 29.369 13.830 -3.889 1.00 0.00 C ATOM 391 N GLU 79 29.800 11.245 -5.600 1.00 0.00 N ATOM 392 CA GLU 79 30.299 10.664 -6.840 1.00 0.00 C ATOM 393 C GLU 79 30.481 11.728 -7.914 1.00 0.00 C ATOM 394 O GLU 79 29.533 12.425 -8.277 1.00 0.00 O ATOM 395 CB GLU 79 29.361 9.569 -7.327 1.00 0.00 C ATOM 396 N LEU 80 31.703 11.848 -8.420 1.00 0.00 N ATOM 397 CA LEU 80 32.036 12.897 -9.377 1.00 0.00 C ATOM 398 C LEU 80 31.719 12.463 -10.803 1.00 0.00 C ATOM 399 O LEU 80 31.346 11.315 -11.043 1.00 0.00 O ATOM 400 CB LEU 80 33.502 13.283 -9.252 1.00 0.00 C ATOM 401 N ARG 81 31.871 13.388 -11.744 1.00 0.00 N ATOM 402 CA ARG 81 31.547 13.120 -13.140 1.00 0.00 C ATOM 403 C ARG 81 32.489 12.081 -13.735 1.00 0.00 C ATOM 404 O ARG 81 33.709 12.200 -13.625 1.00 0.00 O ATOM 405 CB ARG 81 31.591 14.405 -13.951 1.00 0.00 C ATOM 406 N LYS 82 31.915 11.062 -14.366 1.00 0.00 N ATOM 407 CA LYS 82 32.703 10.002 -14.984 1.00 0.00 C ATOM 408 C LYS 82 33.117 10.378 -16.401 1.00 0.00 C ATOM 409 O LYS 82 32.461 11.187 -17.056 1.00 0.00 O ATOM 410 CB LYS 82 31.924 8.696 -14.986 1.00 0.00 C ATOM 411 N ASN 83 34.210 9.784 -16.869 1.00 0.00 N ATOM 412 CA ASN 83 34.665 9.988 -18.239 1.00 0.00 C ATOM 413 C ASN 83 35.060 11.440 -18.479 1.00 0.00 C ATOM 414 O ASN 83 35.163 11.884 -19.622 1.00 0.00 O ATOM 415 CB ASN 83 33.588 9.561 -19.224 1.00 0.00 C ATOM 416 N ALA 84 35.279 12.174 -17.393 1.00 0.00 N ATOM 417 CA ALA 84 35.773 13.543 -17.481 1.00 0.00 C ATOM 418 C ALA 84 37.265 13.611 -17.179 1.00 0.00 C ATOM 419 O ALA 84 37.848 12.656 -16.668 1.00 0.00 O ATOM 420 CB ALA 84 34.997 14.449 -16.538 1.00 0.00 C ATOM 421 N TYR 85 37.877 14.746 -17.498 1.00 0.00 N ATOM 422 CA TYR 85 39.287 14.965 -17.203 1.00 0.00 C ATOM 423 C TYR 85 39.463 15.773 -15.922 1.00 0.00 C ATOM 424 O TYR 85 39.193 16.974 -15.894 1.00 0.00 O ATOM 425 CB TYR 85 39.972 15.661 -18.369 1.00 0.00 C ATOM 426 N LEU 86 39.917 15.107 -14.866 1.00 0.00 N ATOM 427 CA LEU 86 39.970 15.716 -13.542 1.00 0.00 C ATOM 428 C LEU 86 41.385 16.164 -13.199 1.00 0.00 C ATOM 429 O LEU 86 42.329 15.376 -13.259 1.00 0.00 O ATOM 430 CB LEU 86 39.450 14.747 -12.492 1.00 0.00 C ATOM 431 N LYS 87 41.526 17.435 -12.839 1.00 0.00 N ATOM 432 CA LYS 87 42.821 17.982 -12.453 1.00 0.00 C ATOM 433 C LYS 87 43.036 17.882 -10.949 1.00 0.00 C ATOM 434 O LYS 87 42.344 18.536 -10.168 1.00 0.00 O ATOM 435 CB LYS 87 42.945 19.427 -12.913 1.00 0.00 C ATOM 436 N VAL 88 44.000 17.060 -10.548 1.00 0.00 N ATOM 437 CA VAL 88 44.254 16.809 -9.133 1.00 0.00 C ATOM 438 C VAL 88 45.515 17.524 -8.665 1.00 0.00 C ATOM 439 O VAL 88 46.580 17.382 -9.265 1.00 0.00 O ATOM 440 CB VAL 88 44.360 15.315 -8.871 1.00 0.00 C ATOM 441 N LYS 89 45.388 18.293 -7.589 1.00 0.00 N ATOM 442 CA LYS 89 46.520 19.023 -7.031 1.00 0.00 C ATOM 443 C LYS 89 47.343 18.136 -6.105 1.00 0.00 C ATOM 444 O LYS 89 46.836 17.163 -5.548 1.00 0.00 O ATOM 445 CB LYS 89 46.039 20.263 -6.293 1.00 0.00 C ATOM 446 N ALA 90 48.616 18.479 -5.944 1.00 0.00 N ATOM 447 CA ALA 90 49.503 17.740 -5.053 1.00 0.00 C ATOM 448 C ALA 90 50.158 18.665 -4.036 1.00 0.00 C ATOM 449 O ALA 90 50.487 19.810 -4.346 1.00 0.00 O ATOM 450 CB ALA 90 50.560 16.995 -5.854 1.00 0.00 C ATOM 451 N LYS 91 50.345 18.163 -2.820 1.00 0.00 N ATOM 452 CA LYS 91 50.935 18.954 -1.746 1.00 0.00 C ATOM 453 C LYS 91 51.399 18.065 -0.600 1.00 0.00 C ATOM 454 O LYS 91 51.593 16.862 -0.773 1.00 0.00 O ATOM 455 CB LYS 91 49.943 19.992 -1.247 1.00 0.00 C ATOM 456 N GLY 92 51.575 18.665 0.573 1.00 0.00 N ATOM 457 CA GLY 92 51.998 17.926 1.756 1.00 0.00 C ATOM 458 C GLY 92 51.151 16.677 1.958 1.00 0.00 C ATOM 459 O GLY 92 51.675 15.596 2.229 1.00 0.00 O ATOM 461 N LYS 93 49.838 16.831 1.823 1.00 0.00 N ATOM 462 CA LYS 93 48.928 15.692 1.829 1.00 0.00 C ATOM 463 C LYS 93 48.869 15.028 0.460 1.00 0.00 C ATOM 464 O LYS 93 48.385 13.903 0.324 1.00 0.00 O ATOM 465 CB LYS 93 47.539 16.124 2.271 1.00 0.00 C ATOM 466 N TYR 94 49.363 15.730 -0.555 1.00 0.00 N ATOM 467 CA TYR 94 49.475 15.166 -1.894 1.00 0.00 C ATOM 468 C TYR 94 48.170 15.316 -2.667 1.00 0.00 C ATOM 469 O TYR 94 48.173 15.438 -3.891 1.00 0.00 O ATOM 470 CB TYR 94 49.884 13.702 -1.821 1.00 0.00 C ATOM 471 N VAL 95 47.056 15.308 -1.942 1.00 0.00 N ATOM 472 CA VAL 95 45.745 15.495 -2.553 1.00 0.00 C ATOM 473 C VAL 95 44.786 16.190 -1.595 1.00 0.00 C ATOM 474 O VAL 95 44.136 15.543 -0.773 1.00 0.00 O ATOM 475 CB VAL 95 45.174 14.158 -3.002 1.00 0.00 C ATOM 476 N GLU 96 44.702 17.511 -1.704 1.00 0.00 N ATOM 477 CA GLU 96 43.699 18.279 -0.974 1.00 0.00 C ATOM 478 C GLU 96 42.622 18.809 -1.911 1.00 0.00 C ATOM 479 O GLU 96 41.430 18.684 -1.635 1.00 0.00 O ATOM 480 CB GLU 96 44.356 19.422 -0.216 1.00 0.00 C ATOM 481 N THR 97 43.050 19.403 -3.020 1.00 0.00 N ATOM 482 CA THR 97 42.123 19.969 -3.993 1.00 0.00 C ATOM 483 C THR 97 42.475 19.531 -5.409 1.00 0.00 C ATOM 484 O THR 97 43.607 19.134 -5.683 1.00 0.00 O ATOM 485 CB THR 97 42.111 21.487 -3.893 1.00 0.00 C ATOM 486 N TRP 98 41.499 19.607 -6.306 1.00 0.00 N ATOM 487 CA TRP 98 41.693 19.184 -7.688 1.00 0.00 C ATOM 488 C TRP 98 40.817 19.991 -8.639 1.00 0.00 C ATOM 489 O TRP 98 39.625 20.175 -8.395 1.00 0.00 O ATOM 490 CB TRP 98 41.408 17.698 -7.833 1.00 0.00 C ATOM 491 N GLU 99 41.417 20.471 -9.723 1.00 0.00 N ATOM 492 CA GLU 99 40.686 21.233 -10.728 1.00 0.00 C ATOM 493 C GLU 99 40.181 20.328 -11.846 1.00 0.00 C ATOM 494 O GLU 99 40.968 19.783 -12.619 1.00 0.00 O ATOM 495 CB GLU 99 41.560 22.340 -11.295 1.00 0.00 C ATOM 496 N GLU 100 38.864 20.172 -11.925 1.00 0.00 N ATOM 497 CA GLU 100 38.251 19.345 -12.957 1.00 0.00 C ATOM 498 C GLU 100 38.165 20.092 -14.282 1.00 0.00 C ATOM 499 O GLU 100 37.810 21.271 -14.320 1.00 0.00 O ATOM 500 CB GLU 100 36.871 18.883 -12.516 1.00 0.00 C ATOM 501 N VAL 101 38.489 19.400 -15.368 1.00 0.00 N ATOM 502 CA VAL 101 38.439 19.993 -16.698 1.00 0.00 C ATOM 503 C VAL 101 37.835 19.028 -17.710 1.00 0.00 C ATOM 504 O VAL 101 37.818 17.816 -17.493 1.00 0.00 O ATOM 505 CB VAL 101 39.830 20.424 -17.140 1.00 0.00 C ATOM 506 N LYS 102 37.339 19.571 -18.817 1.00 0.00 N ATOM 507 CA LYS 102 36.788 18.755 -19.891 1.00 0.00 C ATOM 508 C LYS 102 37.869 17.899 -20.541 1.00 0.00 C ATOM 509 O LYS 102 39.051 18.237 -20.498 1.00 0.00 O ATOM 510 CB LYS 102 36.108 19.633 -20.929 1.00 0.00 C ATOM 511 N PHE 103 37.454 16.789 -21.144 1.00 0.00 N ATOM 512 CA PHE 103 38.383 15.895 -21.824 1.00 0.00 C ATOM 513 C PHE 103 39.185 16.637 -22.887 1.00 0.00 C ATOM 514 O PHE 103 40.391 16.434 -23.020 1.00 0.00 O ATOM 515 CB PHE 103 37.635 14.724 -22.442 1.00 0.00 C ATOM 516 N GLU 104 38.507 17.496 -23.640 1.00 0.00 N ATOM 517 CA GLU 104 39.152 18.261 -24.699 1.00 0.00 C ATOM 518 C GLU 104 40.243 19.164 -24.140 1.00 0.00 C ATOM 519 O GLU 104 41.364 19.188 -24.650 1.00 0.00 O ATOM 520 CB GLU 104 38.124 19.079 -25.464 1.00 0.00 C ATOM 521 N ASP 105 39.909 19.907 -23.091 1.00 0.00 N ATOM 522 CA ASP 105 40.850 20.841 -22.483 1.00 0.00 C ATOM 523 C ASP 105 42.046 20.108 -21.888 1.00 0.00 C ATOM 524 O ASP 105 43.183 20.568 -21.994 1.00 0.00 O ATOM 525 CB ASP 105 40.155 21.676 -21.419 1.00 0.00 C ATOM 526 N MET 106 41.782 18.966 -21.261 1.00 0.00 N ATOM 527 CA MET 106 42.837 18.164 -20.655 1.00 0.00 C ATOM 528 C MET 106 43.839 17.690 -21.700 1.00 0.00 C ATOM 529 O MET 106 45.046 17.683 -21.459 1.00 0.00 O ATOM 530 CB MET 106 42.241 16.977 -19.914 1.00 0.00 C ATOM 531 N PRO 107 43.332 17.295 -22.863 1.00 0.00 N ATOM 532 CA PRO 107 44.181 16.818 -23.947 1.00 0.00 C ATOM 533 C PRO 107 45.191 17.879 -24.364 1.00 0.00 C ATOM 534 O PRO 107 46.364 17.580 -24.586 1.00 0.00 O ATOM 535 CB PRO 107 43.334 16.394 -25.137 1.00 0.00 C ATOM 536 N ASP 108 44.729 19.120 -24.469 1.00 0.00 N ATOM 537 CA ASP 108 45.593 20.230 -24.850 1.00 0.00 C ATOM 538 C ASP 108 46.702 20.442 -23.827 1.00 0.00 C ATOM 539 O ASP 108 47.844 20.729 -24.185 1.00 0.00 O ATOM 540 CB ASP 108 44.778 21.503 -25.021 1.00 0.00 C ATOM 541 N SER 109 46.359 20.297 -22.551 1.00 0.00 N ATOM 542 CA SER 109 47.327 20.458 -21.475 1.00 0.00 C ATOM 543 C SER 109 48.392 19.369 -21.524 1.00 0.00 C ATOM 544 O SER 109 49.580 19.640 -21.347 1.00 0.00 O ATOM 545 CB SER 109 46.626 20.455 -20.125 1.00 0.00 C ATOM 546 N VAL 110 47.959 18.136 -21.767 1.00 0.00 N ATOM 547 CA VAL 110 48.876 17.006 -21.857 1.00 0.00 C ATOM 548 C VAL 110 49.781 17.127 -23.076 1.00 0.00 C ATOM 549 O VAL 110 50.963 16.788 -23.021 1.00 0.00 O ATOM 550 CB VAL 110 48.103 15.698 -21.896 1.00 0.00 C ATOM 551 N GLN 111 49.219 17.614 -24.177 1.00 0.00 N ATOM 552 CA GLN 111 49.977 17.791 -25.410 1.00 0.00 C ATOM 553 C GLN 111 51.097 18.808 -25.227 1.00 0.00 C ATOM 554 O GLN 111 52.204 18.624 -25.733 1.00 0.00 O ATOM 555 CB GLN 111 49.054 18.212 -26.544 1.00 0.00 C ATOM 556 N SER 112 50.800 19.882 -24.502 1.00 0.00 N ATOM 557 CA SER 112 51.789 20.916 -24.226 1.00 0.00 C ATOM 558 C SER 112 52.870 20.407 -23.281 1.00 0.00 C ATOM 559 O SER 112 54.050 20.716 -23.448 1.00 0.00 O ATOM 560 CB SER 112 51.118 22.152 -23.649 1.00 0.00 C ATOM 561 N LYS 113 52.460 19.625 -22.288 1.00 0.00 N ATOM 562 CA LYS 113 53.394 19.061 -21.321 1.00 0.00 C ATOM 563 C LYS 113 54.389 18.126 -21.996 1.00 0.00 C ATOM 564 O LYS 113 55.594 18.210 -21.760 1.00 0.00 O ATOM 565 CB LYS 113 52.641 18.331 -20.219 1.00 0.00 C ATOM 566 N LEU 114 53.878 17.235 -22.838 1.00 0.00 N ATOM 567 CA LEU 114 54.723 16.301 -23.571 1.00 0.00 C ATOM 568 C LEU 114 55.616 17.031 -24.567 1.00 0.00 C ATOM 569 O LEU 114 56.774 16.662 -24.764 1.00 0.00 O ATOM 570 CB LEU 114 53.872 15.261 -24.285 1.00 0.00 C ATOM 571 N LYS 115 55.071 18.068 -25.193 1.00 0.00 N ATOM 572 CA LYS 115 55.826 18.871 -26.147 1.00 0.00 C ATOM 573 C LYS 115 57.000 19.568 -25.472 1.00 0.00 C ATOM 574 O LYS 115 56.862 20.126 -24.383 1.00 0.00 O ATOM 575 CB LYS 115 56.992 19.559 -25.455 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 393 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 46.58 70.9 158 100.0 158 ARMSMC SECONDARY STRUCTURE . . 37.72 79.6 98 100.0 98 ARMSMC SURFACE . . . . . . . . 53.88 61.8 102 100.0 102 ARMSMC BURIED . . . . . . . . 28.90 87.5 56 100.0 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.37 (Number of atoms: 80) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.37 80 100.0 80 CRMSCA CRN = ALL/NP . . . . . 0.0422 CRMSCA SECONDARY STRUCTURE . . 2.84 49 100.0 49 CRMSCA SURFACE . . . . . . . . 3.79 52 100.0 52 CRMSCA BURIED . . . . . . . . 2.43 28 100.0 28 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.57 393 100.0 393 CRMSMC SECONDARY STRUCTURE . . 3.10 243 100.0 243 CRMSMC SURFACE . . . . . . . . 3.98 256 100.0 256 CRMSMC BURIED . . . . . . . . 2.65 137 100.0 137 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 3.77 73 22.7 321 CRMSSC RELIABLE SIDE CHAINS . 3.77 73 26.4 277 CRMSSC SECONDARY STRUCTURE . . 3.13 47 21.5 219 CRMSSC SURFACE . . . . . . . . 4.27 48 22.2 216 CRMSSC BURIED . . . . . . . . 2.54 25 23.8 105 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.57 393 61.3 641 CRMSALL SECONDARY STRUCTURE . . 3.10 243 58.6 415 CRMSALL SURFACE . . . . . . . . 3.98 256 60.4 424 CRMSALL BURIED . . . . . . . . 2.65 137 63.1 217 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.518 1.000 0.500 80 100.0 80 ERRCA SECONDARY STRUCTURE . . 1.977 1.000 0.500 49 100.0 49 ERRCA SURFACE . . . . . . . . 3.007 1.000 0.500 52 100.0 52 ERRCA BURIED . . . . . . . . 1.609 1.000 0.500 28 100.0 28 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.620 1.000 0.500 393 100.0 393 ERRMC SECONDARY STRUCTURE . . 2.122 1.000 0.500 243 100.0 243 ERRMC SURFACE . . . . . . . . 3.115 1.000 0.500 256 100.0 256 ERRMC BURIED . . . . . . . . 1.695 1.000 0.500 137 100.0 137 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.819 1.000 0.500 73 22.7 321 ERRSC RELIABLE SIDE CHAINS . 2.819 1.000 0.500 73 26.4 277 ERRSC SECONDARY STRUCTURE . . 2.268 1.000 0.500 47 21.5 219 ERRSC SURFACE . . . . . . . . 3.352 1.000 0.500 48 22.2 216 ERRSC BURIED . . . . . . . . 1.797 1.000 0.500 25 23.8 105 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.620 1.000 0.500 393 61.3 641 ERRALL SECONDARY STRUCTURE . . 2.122 1.000 0.500 243 58.6 415 ERRALL SURFACE . . . . . . . . 3.115 1.000 0.500 256 60.4 424 ERRALL BURIED . . . . . . . . 1.695 1.000 0.500 137 63.1 217 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 19 43 58 72 78 80 80 DISTCA CA (P) 23.75 53.75 72.50 90.00 97.50 80 DISTCA CA (RMS) 0.68 1.20 1.66 2.26 2.84 DISTCA ALL (N) 84 192 283 351 383 393 641 DISTALL ALL (P) 13.10 29.95 44.15 54.76 59.75 641 DISTALL ALL (RMS) 0.68 1.16 1.70 2.26 2.94 DISTALL END of the results output