####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 80 ( 320), selected 80 , name T0530AL396_1-D1 # Molecule2: number of CA atoms 80 ( 641), selected 80 , name T0530-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0530AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 80 36 - 115 3.92 3.92 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 55 - 77 1.87 4.33 LONGEST_CONTINUOUS_SEGMENT: 23 56 - 78 1.82 4.69 LCS_AVERAGE: 22.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 95 - 115 0.77 4.09 LCS_AVERAGE: 18.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 80 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 36 H 36 3 5 80 3 3 5 5 6 9 25 31 44 65 67 70 71 73 74 76 77 78 78 79 LCS_GDT Q 37 Q 37 3 11 80 3 4 8 23 38 49 61 64 66 69 70 72 74 74 75 76 77 78 78 79 LCS_GDT Q 38 Q 38 8 11 80 6 27 43 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT D 39 D 39 8 11 80 6 31 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT V 40 V 40 8 11 80 11 32 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT Y 41 Y 41 8 11 80 14 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT V 42 V 42 8 11 80 11 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT Q 43 Q 43 8 11 80 14 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT I 44 I 44 8 11 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT D 45 D 45 8 11 80 3 37 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT R 46 R 46 8 17 80 3 6 26 51 61 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT D 47 D 47 8 17 80 3 23 43 52 61 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT G 48 G 48 5 17 80 3 4 7 9 12 21 54 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT R 49 R 49 5 17 80 4 24 37 56 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT H 50 H 50 5 17 80 5 8 10 35 52 61 64 66 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT L 51 L 51 5 17 80 4 8 10 16 24 29 38 51 66 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT S 52 S 52 5 17 80 5 8 10 13 19 28 32 39 57 64 70 73 74 74 75 76 77 78 78 79 LCS_GDT P 53 P 53 5 17 80 3 8 10 16 20 28 31 38 50 64 69 73 74 74 75 76 77 78 78 79 LCS_GDT G 54 G 54 4 17 80 3 4 8 12 15 19 26 33 40 47 57 70 73 74 75 76 77 78 78 79 LCS_GDT G 55 G 55 5 23 80 5 8 10 16 24 29 38 51 65 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT T 56 T 56 7 23 80 5 8 11 21 30 54 64 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 57 E 57 20 23 80 7 15 29 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT Y 58 Y 58 20 23 80 7 18 50 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT T 59 T 59 20 23 80 9 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT L 60 L 60 20 23 80 11 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT D 61 D 61 20 23 80 11 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT G 62 G 62 20 23 80 9 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT Y 63 Y 63 20 23 80 15 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT N 64 N 64 20 23 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT A 65 A 65 20 23 80 15 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT S 66 S 66 20 23 80 9 37 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT G 67 G 67 20 23 80 11 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 68 K 68 20 23 80 11 37 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 69 K 69 20 23 80 11 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 70 E 70 20 23 80 13 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 71 E 71 20 23 80 13 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT V 72 V 72 20 23 80 11 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT T 73 T 73 20 23 80 8 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT F 74 F 74 20 23 80 5 34 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT F 75 F 75 20 23 80 5 18 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT A 76 A 76 20 23 80 6 12 33 56 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT G 77 G 77 20 23 80 3 17 28 46 57 63 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 78 K 78 3 23 80 0 3 4 5 10 25 38 52 57 65 67 69 71 74 74 76 77 78 78 79 LCS_GDT E 79 E 79 0 6 80 0 1 4 5 6 9 10 12 17 19 37 43 56 62 69 72 73 74 75 76 LCS_GDT L 80 L 80 12 14 80 5 19 46 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT R 81 R 81 12 14 80 5 23 46 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 82 K 82 12 14 80 5 32 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT N 83 N 83 12 14 80 5 32 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT A 84 A 84 12 14 80 5 23 50 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT Y 85 Y 85 12 14 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT L 86 L 86 12 14 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 87 K 87 12 14 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT V 88 V 88 12 14 80 11 37 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 89 K 89 12 14 80 13 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT A 90 A 90 12 14 80 13 33 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 91 K 91 12 14 80 4 23 46 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT G 92 G 92 9 14 80 4 12 27 40 45 58 64 65 68 69 71 73 74 74 75 75 77 78 78 79 LCS_GDT K 93 K 93 3 14 80 3 3 3 6 8 15 24 43 52 64 67 70 71 74 74 75 77 78 78 79 LCS_GDT Y 94 Y 94 3 4 80 3 3 3 4 4 4 4 4 5 5 15 34 39 41 51 72 74 76 77 79 LCS_GDT V 95 V 95 21 21 80 13 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 96 E 96 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT T 97 T 97 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT W 98 W 98 21 21 80 15 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 99 E 99 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 100 E 100 21 21 80 14 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT V 101 V 101 21 21 80 8 36 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 102 K 102 21 21 80 12 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT F 103 F 103 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT E 104 E 104 21 21 80 11 27 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT D 105 D 105 21 21 80 4 10 46 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT M 106 M 106 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT P 107 P 107 21 21 80 5 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT D 108 D 108 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT S 109 S 109 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT V 110 V 110 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT Q 111 Q 111 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT S 112 S 112 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 113 K 113 21 21 80 15 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT L 114 L 114 21 21 80 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_GDT K 115 K 115 21 21 80 4 31 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 LCS_AVERAGE LCS_A: 46.93 ( 18.05 22.75 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 38 51 57 62 64 65 67 68 70 71 73 74 74 75 76 77 78 78 79 GDT PERCENT_AT 20.00 47.50 63.75 71.25 77.50 80.00 81.25 83.75 85.00 87.50 88.75 91.25 92.50 92.50 93.75 95.00 96.25 97.50 97.50 98.75 GDT RMS_LOCAL 0.38 0.70 0.90 1.04 1.21 1.31 1.40 1.61 1.73 2.15 2.22 2.69 2.77 2.77 2.97 3.24 3.27 3.43 3.43 3.66 GDT RMS_ALL_AT 4.21 4.33 4.31 4.33 4.24 4.29 4.25 4.20 4.15 4.05 4.04 3.99 3.97 3.97 3.99 3.97 3.95 3.94 3.94 3.93 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 36 H 36 9.915 6 0.266 0.266 11.469 1.190 0.476 LGA Q 37 Q 37 6.043 5 0.069 0.069 7.332 30.119 13.386 LGA Q 38 Q 38 2.236 5 0.467 0.467 3.561 61.429 27.302 LGA D 39 D 39 1.736 4 0.073 0.073 1.853 75.000 37.500 LGA V 40 V 40 1.539 3 0.142 0.142 2.204 72.976 41.701 LGA Y 41 Y 41 0.616 8 0.034 0.034 0.712 90.476 30.159 LGA V 42 V 42 0.936 3 0.027 0.027 0.936 90.476 51.701 LGA Q 43 Q 43 0.749 5 0.044 0.044 0.949 92.857 41.270 LGA I 44 I 44 0.147 4 0.166 0.166 1.142 95.357 47.679 LGA D 45 D 45 1.267 4 0.267 0.267 2.790 75.476 37.738 LGA R 46 R 46 2.969 7 0.160 0.160 2.969 65.000 23.636 LGA D 47 D 47 3.038 4 0.495 0.495 3.467 53.571 26.786 LGA G 48 G 48 4.273 0 0.402 0.402 4.273 48.571 48.571 LGA R 49 R 49 2.462 7 0.066 0.066 3.283 57.262 20.823 LGA H 50 H 50 5.677 6 0.012 0.012 6.722 19.881 7.952 LGA L 51 L 51 8.495 4 0.066 0.066 9.749 3.929 1.964 LGA S 52 S 52 11.432 2 0.207 0.207 12.685 0.000 0.000 LGA P 53 P 53 12.022 3 0.025 0.025 13.000 0.000 0.000 LGA G 54 G 54 12.718 0 0.473 0.473 12.718 0.000 0.000 LGA G 55 G 55 8.710 0 0.029 0.029 10.069 5.714 5.714 LGA T 56 T 56 5.220 3 0.117 0.117 6.554 28.452 16.259 LGA E 57 E 57 2.244 5 0.077 0.077 3.247 61.071 27.143 LGA Y 58 Y 58 1.453 8 0.107 0.107 1.719 81.548 27.183 LGA T 59 T 59 0.864 3 0.043 0.043 0.951 90.476 51.701 LGA L 60 L 60 0.945 4 0.037 0.037 0.992 90.476 45.238 LGA D 61 D 61 1.092 4 0.056 0.056 1.443 81.429 40.714 LGA G 62 G 62 1.065 0 0.074 0.074 1.065 88.214 88.214 LGA Y 63 Y 63 0.376 8 0.026 0.026 0.601 97.619 32.540 LGA N 64 N 64 0.410 4 0.028 0.028 0.484 100.000 50.000 LGA A 65 A 65 0.836 1 0.026 0.026 1.119 88.214 70.571 LGA S 66 S 66 1.225 2 0.138 0.138 1.674 79.286 52.857 LGA G 67 G 67 0.876 0 0.025 0.025 1.284 85.952 85.952 LGA K 68 K 68 1.179 5 0.039 0.039 1.179 85.952 38.201 LGA K 69 K 69 0.918 5 0.021 0.021 1.038 88.214 39.206 LGA E 70 E 70 0.691 5 0.051 0.051 0.738 90.476 40.212 LGA E 71 E 71 0.776 5 0.109 0.109 1.383 88.214 39.206 LGA V 72 V 72 0.661 3 0.037 0.037 0.661 92.857 53.061 LGA T 73 T 73 0.891 3 0.063 0.063 1.312 85.952 49.116 LGA F 74 F 74 1.065 7 0.039 0.039 1.287 83.690 30.433 LGA F 75 F 75 1.418 7 0.036 0.036 1.755 77.143 28.052 LGA A 76 A 76 2.313 1 0.190 0.190 3.029 61.071 48.857 LGA G 77 G 77 3.958 0 0.700 0.700 4.925 42.262 42.262 LGA K 78 K 78 8.673 5 0.701 0.701 10.433 3.333 1.481 LGA E 79 E 79 12.415 5 0.642 0.642 12.415 0.000 0.000 LGA L 80 L 80 2.405 4 0.336 0.336 4.241 59.881 29.940 LGA R 81 R 81 2.264 7 0.041 0.041 2.356 64.762 23.550 LGA K 82 K 82 1.489 5 0.300 0.300 2.804 71.071 31.587 LGA N 83 N 83 1.537 4 0.159 0.159 1.722 75.000 37.500 LGA A 84 A 84 1.843 1 0.054 0.054 1.843 79.405 63.524 LGA Y 85 Y 85 0.662 8 0.119 0.119 0.936 92.857 30.952 LGA L 86 L 86 0.493 4 0.031 0.031 0.883 92.857 46.429 LGA K 87 K 87 0.565 5 0.034 0.034 0.798 92.857 41.270 LGA V 88 V 88 1.171 3 0.051 0.051 1.847 79.286 45.306 LGA K 89 K 89 1.145 5 0.068 0.068 1.209 83.690 37.196 LGA A 90 A 90 1.469 1 0.064 0.064 1.715 77.143 61.714 LGA K 91 K 91 2.555 5 0.134 0.134 3.121 59.286 26.349 LGA G 92 G 92 5.207 0 0.328 0.328 8.685 19.048 19.048 LGA K 93 K 93 8.906 5 0.244 0.244 12.261 3.214 1.429 LGA Y 94 Y 94 12.354 8 0.083 0.083 12.949 0.000 0.000 LGA V 95 V 95 0.951 3 0.079 0.079 1.122 88.214 50.408 LGA E 96 E 96 0.729 5 0.066 0.066 0.848 90.476 40.212 LGA T 97 T 97 0.448 3 0.027 0.027 0.896 92.857 53.061 LGA W 98 W 98 0.975 10 0.048 0.048 0.975 92.857 26.531 LGA E 99 E 99 0.507 5 0.045 0.045 0.578 92.857 41.270 LGA E 100 E 100 0.590 5 0.073 0.073 1.415 90.595 40.265 LGA V 101 V 101 0.975 3 0.042 0.042 0.975 90.476 51.701 LGA K 102 K 102 0.928 5 0.088 0.088 0.928 90.476 40.212 LGA F 103 F 103 0.794 7 0.116 0.116 0.794 90.476 32.900 LGA E 104 E 104 1.441 5 0.095 0.095 1.939 79.405 35.291 LGA D 105 D 105 1.754 4 0.106 0.106 1.754 79.286 39.643 LGA M 106 M 106 0.603 4 0.097 0.097 0.603 95.238 47.619 LGA P 107 P 107 0.886 3 0.057 0.057 0.886 90.476 51.701 LGA D 108 D 108 0.713 4 0.040 0.040 0.783 90.476 45.238 LGA S 109 S 109 0.594 2 0.101 0.101 0.619 90.476 60.317 LGA V 110 V 110 0.456 3 0.019 0.019 0.466 100.000 57.143 LGA Q 111 Q 111 0.204 5 0.025 0.025 0.263 100.000 44.444 LGA S 112 S 112 0.089 2 0.032 0.032 0.497 100.000 66.667 LGA K 113 K 113 0.760 5 0.026 0.026 0.906 90.476 40.212 LGA L 114 L 114 0.664 4 0.209 0.209 2.368 84.167 42.083 LGA K 115 K 115 1.450 6 0.666 0.666 2.721 71.548 28.619 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 80 320 320 100.00 641 320 49.92 80 SUMMARY(RMSD_GDC): 3.916 3.952 3.952 69.405 36.177 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 80 80 4.0 67 1.61 74.375 64.432 3.915 LGA_LOCAL RMSD: 1.611 Number of atoms: 67 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 4.205 Number of assigned atoms: 80 Std_ASGN_ATOMS RMSD: 3.916 Standard rmsd on all 80 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.082974 * X + -0.913432 * Y + -0.398443 * Z + 44.592121 Y_new = -0.496949 * X + -0.308637 * Y + 0.811039 * Z + 12.285128 Z_new = -0.863804 * X + 0.265301 * Y + -0.428321 * Z + -10.831989 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.736237 1.042771 2.587032 [DEG: -99.4790 59.7464 148.2260 ] ZXZ: -2.684950 2.013430 -1.272810 [DEG: -153.8363 115.3610 -72.9267 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0530AL396_1-D1 REMARK 2: T0530-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0530AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 80 80 4.0 67 1.61 64.432 3.92 REMARK ---------------------------------------------------------- MOLECULE T0530AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2k5w_A ATOM 37 N HIS 36 58.096 23.695 -13.894 1.00 0.00 N ATOM 38 CA HIS 36 56.786 23.045 -13.900 1.00 0.00 C ATOM 39 C HIS 36 55.912 23.477 -12.719 1.00 0.00 C ATOM 40 O HIS 36 56.275 24.387 -11.973 1.00 0.00 O ATOM 41 N GLN 37 54.760 22.825 -12.547 1.00 0.00 N ATOM 42 CA GLN 37 53.835 23.159 -11.451 1.00 0.00 C ATOM 43 C GLN 37 53.358 21.898 -10.709 1.00 0.00 C ATOM 44 O GLN 37 53.320 20.807 -11.280 1.00 0.00 O ATOM 45 N GLN 38 52.980 22.055 -9.439 1.00 0.00 N ATOM 46 CA GLN 38 52.475 20.940 -8.628 1.00 0.00 C ATOM 47 C GLN 38 51.001 20.615 -8.965 1.00 0.00 C ATOM 48 O GLN 38 50.129 20.647 -8.090 1.00 0.00 O ATOM 49 N ASP 39 50.730 20.305 -10.234 1.00 0.00 N ATOM 50 CA ASP 39 49.364 20.002 -10.691 1.00 0.00 C ATOM 51 C ASP 39 49.302 18.662 -11.449 1.00 0.00 C ATOM 52 O ASP 39 50.133 18.383 -12.315 1.00 0.00 O ATOM 53 N VAL 40 48.306 17.842 -11.117 1.00 0.00 N ATOM 54 CA VAL 40 48.137 16.515 -11.732 1.00 0.00 C ATOM 55 C VAL 40 46.789 16.406 -12.467 1.00 0.00 C ATOM 56 O VAL 40 45.867 17.179 -12.208 1.00 0.00 O ATOM 57 N TYR 41 46.677 15.444 -13.383 1.00 0.00 N ATOM 58 CA TYR 41 45.457 15.267 -14.187 1.00 0.00 C ATOM 59 C TYR 41 45.053 13.782 -14.274 1.00 0.00 C ATOM 60 O TYR 41 45.876 12.929 -14.581 1.00 0.00 O ATOM 61 N VAL 42 43.776 13.487 -14.022 1.00 0.00 N ATOM 62 CA VAL 42 43.281 12.095 -13.943 1.00 0.00 C ATOM 63 C VAL 42 42.043 11.882 -14.845 1.00 0.00 C ATOM 64 O VAL 42 41.395 12.839 -15.237 1.00 0.00 O ATOM 65 N GLN 43 41.727 10.630 -15.189 1.00 0.00 N ATOM 66 CA GLN 43 40.511 10.332 -15.972 1.00 0.00 C ATOM 67 C GLN 43 39.634 9.269 -15.279 1.00 0.00 C ATOM 68 O GLN 43 40.145 8.295 -14.721 1.00 0.00 O ATOM 69 N ILE 44 38.313 9.461 -15.328 1.00 0.00 N ATOM 70 CA ILE 44 37.359 8.542 -14.679 1.00 0.00 C ATOM 71 C ILE 44 37.189 7.226 -15.467 1.00 0.00 C ATOM 72 O ILE 44 36.795 7.236 -16.634 1.00 0.00 O ATOM 73 N ASP 45 37.483 6.098 -14.813 1.00 0.00 N ATOM 74 CA ASP 45 37.331 4.769 -15.433 1.00 0.00 C ATOM 75 C ASP 45 36.092 4.025 -14.895 1.00 0.00 C ATOM 76 O ASP 45 35.384 3.352 -15.646 1.00 0.00 O ATOM 77 N ARG 46 35.850 4.137 -13.591 1.00 0.00 N ATOM 78 CA ARG 46 34.699 3.479 -12.973 1.00 0.00 C ATOM 79 C ARG 46 34.240 4.171 -11.689 1.00 0.00 C ATOM 80 O ARG 46 34.598 5.326 -11.438 1.00 0.00 O ATOM 81 N ASP 47 33.448 3.473 -10.868 1.00 0.00 N ATOM 82 CA ASP 47 32.917 4.053 -9.627 1.00 0.00 C ATOM 83 C ASP 47 32.888 3.032 -8.470 1.00 0.00 C ATOM 84 O ASP 47 33.728 3.079 -7.567 1.00 0.00 O ATOM 85 N GLY 48 31.931 2.100 -8.518 1.00 0.00 N ATOM 86 CA GLY 48 31.695 1.175 -7.404 1.00 0.00 C ATOM 87 C GLY 48 32.909 0.331 -7.011 1.00 0.00 C ATOM 88 O GLY 48 33.038 -0.821 -7.430 1.00 0.00 O ATOM 89 N ARG 49 33.789 0.898 -6.187 1.00 0.00 N ATOM 90 CA ARG 49 35.002 0.203 -5.731 1.00 0.00 C ATOM 91 C ARG 49 35.071 0.146 -4.196 1.00 0.00 C ATOM 92 O ARG 49 35.043 1.181 -3.529 1.00 0.00 O ATOM 93 N HIS 50 35.163 -1.063 -3.637 1.00 0.00 N ATOM 94 CA HIS 50 35.229 -1.244 -2.177 1.00 0.00 C ATOM 95 C HIS 50 36.546 -1.910 -1.743 1.00 0.00 C ATOM 96 O HIS 50 37.079 -2.778 -2.440 1.00 0.00 O ATOM 97 N LEU 51 37.069 -1.489 -0.597 1.00 0.00 N ATOM 98 CA LEU 51 38.238 -2.129 0.011 1.00 0.00 C ATOM 99 C LEU 51 38.020 -2.303 1.520 1.00 0.00 C ATOM 100 O LEU 51 37.824 -1.330 2.249 1.00 0.00 O ATOM 101 N SER 52 38.037 -3.549 1.988 1.00 0.00 N ATOM 102 CA SER 52 37.669 -3.844 3.376 1.00 0.00 C ATOM 103 C SER 52 38.877 -3.766 4.334 1.00 0.00 C ATOM 104 O SER 52 39.723 -4.666 4.368 1.00 0.00 O ATOM 105 N PRO 53 36.019 -3.571 7.890 1.00 0.00 N ATOM 106 CA PRO 53 35.036 -2.559 7.487 1.00 0.00 C ATOM 107 C PRO 53 35.205 -2.180 6.005 1.00 0.00 C ATOM 108 O PRO 53 36.315 -1.912 5.543 1.00 0.00 O ATOM 109 N GLY 54 34.101 -2.162 5.266 1.00 0.00 N ATOM 110 CA GLY 54 34.134 -1.878 3.826 1.00 0.00 C ATOM 111 C GLY 54 34.265 -0.370 3.549 1.00 0.00 C ATOM 112 O GLY 54 33.338 0.403 3.798 1.00 0.00 O ATOM 113 N GLY 55 35.429 0.039 3.045 1.00 0.00 N ATOM 114 CA GLY 55 35.674 1.440 2.681 1.00 0.00 C ATOM 115 C GLY 55 35.393 1.680 1.189 1.00 0.00 C ATOM 116 O GLY 55 35.608 0.798 0.358 1.00 0.00 O ATOM 117 N THR 56 34.906 2.871 0.859 1.00 0.00 N ATOM 118 CA THR 56 34.596 3.228 -0.532 1.00 0.00 C ATOM 119 C THR 56 35.621 4.236 -1.079 1.00 0.00 C ATOM 120 O THR 56 35.586 5.421 -0.739 1.00 0.00 O ATOM 121 N GLU 57 36.534 3.761 -1.927 1.00 0.00 N ATOM 122 CA GLU 57 37.609 4.602 -2.474 1.00 0.00 C ATOM 123 C GLU 57 37.746 4.433 -3.996 1.00 0.00 C ATOM 124 O GLU 57 37.289 3.445 -4.564 1.00 0.00 O ATOM 125 N TYR 58 38.386 5.402 -4.646 1.00 0.00 N ATOM 126 CA TYR 58 38.574 5.375 -6.105 1.00 0.00 C ATOM 127 C TYR 58 40.065 5.454 -6.473 1.00 0.00 C ATOM 128 O TYR 58 40.752 6.396 -6.083 1.00 0.00 O ATOM 129 N THR 59 40.555 4.471 -7.234 1.00 0.00 N ATOM 130 CA THR 59 41.962 4.450 -7.680 1.00 0.00 C ATOM 131 C THR 59 42.056 4.599 -9.203 1.00 0.00 C ATOM 132 O THR 59 41.650 3.705 -9.952 1.00 0.00 O ATOM 133 N LEU 60 42.593 5.724 -9.662 1.00 0.00 N ATOM 134 CA LEU 60 42.644 6.025 -11.098 1.00 0.00 C ATOM 135 C LEU 60 44.039 6.508 -11.541 1.00 0.00 C ATOM 136 O LEU 60 44.805 7.054 -10.741 1.00 0.00 O ATOM 137 N ASP 61 44.389 6.301 -12.830 1.00 0.00 N ATOM 138 CA ASP 61 45.660 6.778 -13.397 1.00 0.00 C ATOM 139 C ASP 61 45.685 8.305 -13.586 1.00 0.00 C ATOM 140 O ASP 61 44.673 8.923 -13.926 1.00 0.00 O ATOM 141 N GLY 62 46.847 8.908 -13.371 1.00 0.00 N ATOM 142 CA GLY 62 47.003 10.357 -13.505 1.00 0.00 C ATOM 143 C GLY 62 48.289 10.721 -14.263 1.00 0.00 C ATOM 144 O GLY 62 49.129 9.869 -14.528 1.00 0.00 O ATOM 145 N TYR 63 48.418 11.991 -14.623 1.00 0.00 N ATOM 146 CA TYR 63 49.633 12.517 -15.256 1.00 0.00 C ATOM 147 C TYR 63 49.933 13.922 -14.723 1.00 0.00 C ATOM 148 O TYR 63 49.020 14.726 -14.541 1.00 0.00 O ATOM 149 N ASN 64 51.202 14.220 -14.456 1.00 0.00 N ATOM 150 CA ASN 64 51.591 15.571 -14.036 1.00 0.00 C ATOM 151 C ASN 64 51.708 16.507 -15.252 1.00 0.00 C ATOM 152 O ASN 64 51.498 16.085 -16.389 1.00 0.00 O ATOM 153 N ALA 65 52.056 17.771 -15.010 1.00 0.00 N ATOM 154 CA ALA 65 52.154 18.771 -16.084 1.00 0.00 C ATOM 155 C ALA 65 53.145 18.353 -17.193 1.00 0.00 C ATOM 156 O ALA 65 52.968 18.713 -18.361 1.00 0.00 O ATOM 157 N SER 66 54.174 17.583 -16.838 1.00 0.00 N ATOM 158 CA SER 66 55.155 17.110 -17.826 1.00 0.00 C ATOM 159 C SER 66 54.626 15.870 -18.577 1.00 0.00 C ATOM 160 O SER 66 55.154 15.486 -19.623 1.00 0.00 O ATOM 161 N GLY 67 53.578 15.252 -18.037 1.00 0.00 N ATOM 162 CA GLY 67 52.937 14.118 -18.697 1.00 0.00 C ATOM 163 C GLY 67 53.440 12.758 -18.218 1.00 0.00 C ATOM 164 O GLY 67 53.132 11.730 -18.824 1.00 0.00 O ATOM 165 N LYS 68 54.213 12.740 -17.135 1.00 0.00 N ATOM 166 CA LYS 68 54.727 11.478 -16.589 1.00 0.00 C ATOM 167 C LYS 68 53.623 10.722 -15.833 1.00 0.00 C ATOM 168 O LYS 68 52.918 11.298 -15.003 1.00 0.00 O ATOM 169 N LYS 69 53.482 9.428 -16.116 1.00 0.00 N ATOM 170 CA LYS 69 52.374 8.639 -15.574 1.00 0.00 C ATOM 171 C LYS 69 52.412 8.541 -14.038 1.00 0.00 C ATOM 172 O LYS 69 53.471 8.378 -13.429 1.00 0.00 O ATOM 173 N GLU 70 51.234 8.643 -13.435 1.00 0.00 N ATOM 174 CA GLU 70 51.052 8.555 -11.983 1.00 0.00 C ATOM 175 C GLU 70 49.836 7.674 -11.663 1.00 0.00 C ATOM 176 O GLU 70 49.049 7.341 -12.553 1.00 0.00 O ATOM 177 N GLU 71 49.682 7.292 -10.401 1.00 0.00 N ATOM 178 CA GLU 71 48.493 6.554 -9.961 1.00 0.00 C ATOM 179 C GLU 71 48.019 7.066 -8.593 1.00 0.00 C ATOM 180 O GLU 71 48.719 6.925 -7.591 1.00 0.00 O ATOM 181 N VAL 72 46.827 7.662 -8.556 1.00 0.00 N ATOM 182 CA VAL 72 46.334 8.328 -7.343 1.00 0.00 C ATOM 183 C VAL 72 44.962 7.786 -6.902 1.00 0.00 C ATOM 184 O VAL 72 44.108 7.465 -7.731 1.00 0.00 O ATOM 185 N THR 73 44.769 7.684 -5.586 1.00 0.00 N ATOM 186 CA THR 73 43.503 7.205 -5.006 1.00 0.00 C ATOM 187 C THR 73 42.793 8.316 -4.216 1.00 0.00 C ATOM 188 O THR 73 43.351 8.866 -3.267 1.00 0.00 O ATOM 189 N PHE 74 41.559 8.637 -4.606 1.00 0.00 N ATOM 190 CA PHE 74 40.774 9.683 -3.933 1.00 0.00 C ATOM 191 C PHE 74 39.446 9.130 -3.383 1.00 0.00 C ATOM 192 O PHE 74 39.077 7.983 -3.645 1.00 0.00 O ATOM 193 N PHE 75 38.733 9.955 -2.618 1.00 0.00 N ATOM 194 CA PHE 75 37.443 9.562 -2.040 1.00 0.00 C ATOM 195 C PHE 75 36.493 10.766 -1.941 1.00 0.00 C ATOM 196 O PHE 75 36.935 11.909 -1.806 1.00 0.00 O ATOM 197 N ALA 76 35.189 10.501 -2.011 1.00 0.00 N ATOM 198 CA ALA 76 34.168 11.551 -1.903 1.00 0.00 C ATOM 199 C ALA 76 34.097 12.125 -0.480 1.00 0.00 C ATOM 200 O ALA 76 33.689 11.440 0.460 1.00 0.00 O ATOM 201 N GLY 77 34.504 13.384 -0.324 1.00 0.00 N ATOM 202 CA GLY 77 34.470 14.060 0.984 1.00 0.00 C ATOM 203 C GLY 77 33.084 14.659 1.270 1.00 0.00 C ATOM 204 O GLY 77 32.194 14.623 0.418 1.00 0.00 O ATOM 205 N LYS 78 32.905 15.233 2.461 1.00 0.00 N ATOM 206 CA LYS 78 31.634 15.879 2.819 1.00 0.00 C ATOM 207 C LYS 78 31.406 17.167 2.005 1.00 0.00 C ATOM 208 O LYS 78 30.341 17.780 2.079 1.00 0.00 O ATOM 209 N GLU 79 32.425 17.576 1.253 1.00 0.00 N ATOM 210 CA GLU 79 32.354 18.773 0.405 1.00 0.00 C ATOM 211 C GLU 79 31.888 18.433 -1.017 1.00 0.00 C ATOM 212 O GLU 79 31.566 19.327 -1.798 1.00 0.00 O ATOM 213 N LEU 80 31.457 13.470 -12.125 1.00 0.00 N ATOM 214 CA LEU 80 32.385 12.364 -12.393 1.00 0.00 C ATOM 215 C LEU 80 31.873 11.506 -13.554 1.00 0.00 C ATOM 216 O LEU 80 31.302 10.432 -13.360 1.00 0.00 O ATOM 217 N ARG 81 32.045 12.024 -14.762 1.00 0.00 N ATOM 218 CA ARG 81 31.581 11.352 -15.979 1.00 0.00 C ATOM 219 C ARG 81 32.630 10.359 -16.496 1.00 0.00 C ATOM 220 O ARG 81 33.795 10.714 -16.663 1.00 0.00 O ATOM 221 N LYS 82 32.204 9.119 -16.755 1.00 0.00 N ATOM 222 CA LYS 82 33.118 8.053 -17.192 1.00 0.00 C ATOM 223 C LYS 82 33.659 8.307 -18.610 1.00 0.00 C ATOM 224 O LYS 82 33.252 7.653 -19.574 1.00 0.00 O ATOM 225 N ASN 83 34.559 9.286 -18.702 1.00 0.00 N ATOM 226 CA ASN 83 35.219 9.703 -19.953 1.00 0.00 C ATOM 227 C ASN 83 35.867 11.080 -19.746 1.00 0.00 C ATOM 228 O ASN 83 36.846 11.432 -20.406 1.00 0.00 O ATOM 229 N ALA 84 35.294 11.850 -18.818 1.00 0.00 N ATOM 230 CA ALA 84 35.784 13.191 -18.490 1.00 0.00 C ATOM 231 C ALA 84 37.110 13.138 -17.717 1.00 0.00 C ATOM 232 O ALA 84 37.535 12.077 -17.252 1.00 0.00 O ATOM 233 N TYR 85 37.746 14.295 -17.565 1.00 0.00 N ATOM 234 CA TYR 85 39.062 14.378 -16.932 1.00 0.00 C ATOM 235 C TYR 85 38.991 15.064 -15.560 1.00 0.00 C ATOM 236 O TYR 85 37.978 15.656 -15.191 1.00 0.00 O ATOM 237 N LEU 86 40.084 14.974 -14.815 1.00 0.00 N ATOM 238 CA LEU 86 40.178 15.538 -13.471 1.00 0.00 C ATOM 239 C LEU 86 41.481 16.324 -13.305 1.00 0.00 C ATOM 240 O LEU 86 42.469 16.071 -13.993 1.00 0.00 O ATOM 241 N LYS 87 41.471 17.260 -12.374 1.00 0.00 N ATOM 242 CA LYS 87 42.624 18.105 -12.085 1.00 0.00 C ATOM 243 C LYS 87 42.897 18.090 -10.577 1.00 0.00 C ATOM 244 O LYS 87 42.083 18.565 -9.791 1.00 0.00 O ATOM 245 N VAL 88 44.038 17.542 -10.177 1.00 0.00 N ATOM 246 CA VAL 88 44.353 17.356 -8.758 1.00 0.00 C ATOM 247 C VAL 88 45.401 18.364 -8.278 1.00 0.00 C ATOM 248 O VAL 88 46.459 18.529 -8.892 1.00 0.00 O ATOM 249 N LYS 89 45.096 19.032 -7.175 1.00 0.00 N ATOM 250 CA LYS 89 45.983 20.042 -6.596 1.00 0.00 C ATOM 251 C LYS 89 46.720 19.491 -5.371 1.00 0.00 C ATOM 252 O LYS 89 46.095 19.041 -4.406 1.00 0.00 O ATOM 253 N ALA 90 48.048 19.515 -5.416 1.00 0.00 N ATOM 254 CA ALA 90 48.869 19.102 -4.275 1.00 0.00 C ATOM 255 C ALA 90 49.658 20.296 -3.719 1.00 0.00 C ATOM 256 O ALA 90 50.138 21.147 -4.473 1.00 0.00 O ATOM 257 N LYS 91 49.784 20.363 -2.401 1.00 0.00 N ATOM 258 CA LYS 91 50.441 21.494 -1.742 1.00 0.00 C ATOM 259 C LYS 91 51.849 21.101 -1.259 1.00 0.00 C ATOM 260 O LYS 91 52.155 19.920 -1.083 1.00 0.00 O ATOM 261 N GLY 92 52.710 22.090 -1.073 1.00 0.00 N ATOM 262 CA GLY 92 54.095 21.842 -0.681 1.00 0.00 C ATOM 263 C GLY 92 54.213 21.764 0.850 1.00 0.00 C ATOM 264 O GLY 92 53.674 22.614 1.561 1.00 0.00 O ATOM 265 N LYS 93 54.916 20.733 1.337 1.00 0.00 N ATOM 266 CA LYS 93 55.010 20.430 2.780 1.00 0.00 C ATOM 267 C LYS 93 55.276 21.684 3.637 1.00 0.00 C ATOM 268 O LYS 93 54.647 21.877 4.680 1.00 0.00 O ATOM 269 N TYR 94 56.208 22.523 3.201 1.00 0.00 N ATOM 270 CA TYR 94 56.425 23.831 3.821 1.00 0.00 C ATOM 271 C TYR 94 55.985 24.934 2.847 1.00 0.00 C ATOM 272 O TYR 94 56.720 25.297 1.926 1.00 0.00 O ATOM 273 N VAL 95 47.144 15.163 -1.884 1.00 0.00 N ATOM 274 CA VAL 95 46.141 15.867 -2.706 1.00 0.00 C ATOM 275 C VAL 95 45.113 16.618 -1.838 1.00 0.00 C ATOM 276 O VAL 95 44.313 16.008 -1.130 1.00 0.00 O ATOM 277 N GLU 96 45.138 17.949 -1.912 1.00 0.00 N ATOM 278 CA GLU 96 44.264 18.792 -1.082 1.00 0.00 C ATOM 279 C GLU 96 42.883 19.008 -1.726 1.00 0.00 C ATOM 280 O GLU 96 41.886 19.189 -1.023 1.00 0.00 O ATOM 281 N THR 97 42.825 18.987 -3.059 1.00 0.00 N ATOM 282 CA THR 97 41.558 19.184 -3.793 1.00 0.00 C ATOM 283 C THR 97 41.641 18.638 -5.222 1.00 0.00 C ATOM 284 O THR 97 42.730 18.386 -5.737 1.00 0.00 O ATOM 285 N TRP 98 40.483 18.470 -5.866 1.00 0.00 N ATOM 286 CA TRP 98 40.434 18.042 -7.271 1.00 0.00 C ATOM 287 C TRP 98 39.334 18.794 -8.044 1.00 0.00 C ATOM 288 O TRP 98 38.421 19.370 -7.448 1.00 0.00 O ATOM 289 N GLU 99 39.429 18.775 -9.369 1.00 0.00 N ATOM 290 CA GLU 99 38.514 19.526 -10.243 1.00 0.00 C ATOM 291 C GLU 99 38.143 18.703 -11.491 1.00 0.00 C ATOM 292 O GLU 99 38.999 18.056 -12.081 1.00 0.00 O ATOM 293 N GLU 100 36.873 18.725 -11.895 1.00 0.00 N ATOM 294 CA GLU 100 36.438 17.992 -13.097 1.00 0.00 C ATOM 295 C GLU 100 36.584 18.882 -14.342 1.00 0.00 C ATOM 296 O GLU 100 36.020 19.977 -14.400 1.00 0.00 O ATOM 297 N VAL 101 37.347 18.411 -15.329 1.00 0.00 N ATOM 298 CA VAL 101 37.713 19.232 -16.493 1.00 0.00 C ATOM 299 C VAL 101 37.571 18.483 -17.831 1.00 0.00 C ATOM 300 O VAL 101 37.262 17.288 -17.874 1.00 0.00 O ATOM 301 N LYS 102 37.815 19.211 -18.920 1.00 0.00 N ATOM 302 CA LYS 102 37.779 18.650 -20.275 1.00 0.00 C ATOM 303 C LYS 102 39.201 18.555 -20.855 1.00 0.00 C ATOM 304 O LYS 102 40.160 19.042 -20.253 1.00 0.00 O ATOM 305 N PHE 103 39.336 17.941 -22.030 1.00 0.00 N ATOM 306 CA PHE 103 40.650 17.779 -22.672 1.00 0.00 C ATOM 307 C PHE 103 41.325 19.141 -22.942 1.00 0.00 C ATOM 308 O PHE 103 42.552 19.236 -22.996 1.00 0.00 O ATOM 309 N GLU 104 40.514 20.186 -23.103 1.00 0.00 N ATOM 310 CA GLU 104 41.024 21.545 -23.333 1.00 0.00 C ATOM 311 C GLU 104 41.820 22.087 -22.129 1.00 0.00 C ATOM 312 O GLU 104 42.773 22.851 -22.303 1.00 0.00 O ATOM 313 N ASP 105 41.422 21.702 -20.912 1.00 0.00 N ATOM 314 CA ASP 105 42.127 22.138 -19.696 1.00 0.00 C ATOM 315 C ASP 105 43.493 21.443 -19.560 1.00 0.00 C ATOM 316 O ASP 105 44.385 21.928 -18.860 1.00 0.00 O ATOM 317 N MET 106 43.645 20.308 -20.235 1.00 0.00 N ATOM 318 CA MET 106 44.889 19.538 -20.193 1.00 0.00 C ATOM 319 C MET 106 45.986 20.208 -21.032 1.00 0.00 C ATOM 320 O MET 106 45.726 20.682 -22.141 1.00 0.00 O ATOM 321 N PRO 107 47.233 20.262 -20.520 1.00 0.00 N ATOM 322 CA PRO 107 48.381 20.734 -21.308 1.00 0.00 C ATOM 323 C PRO 107 48.700 19.784 -22.477 1.00 0.00 C ATOM 324 O PRO 107 48.346 18.602 -22.439 1.00 0.00 O ATOM 325 N ASP 108 49.378 20.301 -23.501 1.00 0.00 N ATOM 326 CA ASP 108 49.630 19.554 -24.746 1.00 0.00 C ATOM 327 C ASP 108 50.190 18.143 -24.499 1.00 0.00 C ATOM 328 O ASP 108 49.782 17.181 -25.147 1.00 0.00 O ATOM 329 N SER 109 51.127 18.021 -23.570 1.00 0.00 N ATOM 330 CA SER 109 51.749 16.722 -23.299 1.00 0.00 C ATOM 331 C SER 109 50.742 15.738 -22.676 1.00 0.00 C ATOM 332 O SER 109 50.618 14.595 -23.119 1.00 0.00 O ATOM 333 N VAL 110 50.006 16.207 -21.669 1.00 0.00 N ATOM 334 CA VAL 110 49.044 15.370 -20.939 1.00 0.00 C ATOM 335 C VAL 110 47.913 14.844 -21.839 1.00 0.00 C ATOM 336 O VAL 110 47.580 13.657 -21.800 1.00 0.00 O ATOM 337 N GLN 111 47.321 15.726 -22.644 1.00 0.00 N ATOM 338 CA GLN 111 46.218 15.338 -23.533 1.00 0.00 C ATOM 339 C GLN 111 46.627 14.181 -24.462 1.00 0.00 C ATOM 340 O GLN 111 45.863 13.232 -24.657 1.00 0.00 O ATOM 341 N SER 112 47.841 14.252 -25.011 1.00 0.00 N ATOM 342 CA SER 112 48.383 13.167 -25.835 1.00 0.00 C ATOM 343 C SER 112 48.654 11.894 -25.006 1.00 0.00 C ATOM 344 O SER 112 48.536 10.776 -25.518 1.00 0.00 O ATOM 345 N LYS 113 49.009 12.065 -23.730 1.00 0.00 N ATOM 346 CA LYS 113 49.256 10.926 -22.830 1.00 0.00 C ATOM 347 C LYS 113 47.965 10.150 -22.510 1.00 0.00 C ATOM 348 O LYS 113 48.008 8.952 -22.225 1.00 0.00 O ATOM 349 N LEU 114 46.823 10.841 -22.532 1.00 0.00 N ATOM 350 CA LEU 114 45.521 10.190 -22.319 1.00 0.00 C ATOM 351 C LEU 114 44.990 9.537 -23.606 1.00 0.00 C ATOM 352 O LEU 114 44.572 8.378 -23.602 1.00 0.00 O ATOM 353 N LYS 115 45.001 10.283 -24.708 1.00 0.00 N ATOM 354 CA LYS 115 44.415 9.800 -25.969 1.00 0.00 C ATOM 355 C LYS 115 45.367 8.873 -26.747 1.00 0.00 C ATOM 356 O LYS 115 44.932 8.114 -27.614 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 320 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 44.30 75.9 158 100.0 158 ARMSMC SECONDARY STRUCTURE . . 22.41 86.7 98 100.0 98 ARMSMC SURFACE . . . . . . . . 51.70 71.6 102 100.0 102 ARMSMC BURIED . . . . . . . . 25.86 83.9 56 100.0 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.92 (Number of atoms: 80) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.92 80 100.0 80 CRMSCA CRN = ALL/NP . . . . . 0.0490 CRMSCA SECONDARY STRUCTURE . . 2.81 49 100.0 49 CRMSCA SURFACE . . . . . . . . 4.60 52 100.0 52 CRMSCA BURIED . . . . . . . . 2.13 28 100.0 28 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.95 320 81.4 393 CRMSMC SECONDARY STRUCTURE . . 2.82 196 80.7 243 CRMSMC SURFACE . . . . . . . . 4.64 208 81.2 256 CRMSMC BURIED . . . . . . . . 2.15 112 81.8 137 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 321 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 277 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 219 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 216 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 105 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.95 320 49.9 641 CRMSALL SECONDARY STRUCTURE . . 2.82 196 47.2 415 CRMSALL SURFACE . . . . . . . . 4.64 208 49.1 424 CRMSALL BURIED . . . . . . . . 2.15 112 51.6 217 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.861 1.000 0.500 80 100.0 80 ERRCA SECONDARY STRUCTURE . . 2.087 1.000 0.500 49 100.0 49 ERRCA SURFACE . . . . . . . . 3.475 1.000 0.500 52 100.0 52 ERRCA BURIED . . . . . . . . 1.719 1.000 0.500 28 100.0 28 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.886 1.000 0.500 320 81.4 393 ERRMC SECONDARY STRUCTURE . . 2.106 1.000 0.500 196 80.7 243 ERRMC SURFACE . . . . . . . . 3.506 1.000 0.500 208 81.2 256 ERRMC BURIED . . . . . . . . 1.735 1.000 0.500 112 81.8 137 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 321 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 277 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 219 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 216 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 105 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.886 1.000 0.500 320 49.9 641 ERRALL SECONDARY STRUCTURE . . 2.106 1.000 0.500 196 47.2 415 ERRALL SURFACE . . . . . . . . 3.506 1.000 0.500 208 49.1 424 ERRALL BURIED . . . . . . . . 1.735 1.000 0.500 112 51.6 217 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 7 45 60 68 77 80 80 DISTCA CA (P) 8.75 56.25 75.00 85.00 96.25 80 DISTCA CA (RMS) 0.78 1.40 1.67 2.08 3.27 DISTCA ALL (N) 27 176 239 273 305 320 641 DISTALL ALL (P) 4.21 27.46 37.29 42.59 47.58 641 DISTALL ALL (RMS) 0.72 1.40 1.70 2.10 3.20 DISTALL END of the results output