####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 80 ( 320), selected 80 , name T0530AL285_1-D1 # Molecule2: number of CA atoms 80 ( 641), selected 80 , name T0530-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0530AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 68 48 - 115 4.69 9.10 LCS_AVERAGE: 75.97 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 55 52 - 106 2.00 9.25 LONGEST_CONTINUOUS_SEGMENT: 55 53 - 107 1.95 9.27 LCS_AVERAGE: 53.27 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 56 - 74 0.99 9.44 LCS_AVERAGE: 16.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 80 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT H 36 H 36 3 5 16 3 3 3 3 5 6 8 10 13 13 14 15 16 18 19 23 27 31 35 36 LCS_GDT Q 37 Q 37 4 6 16 3 3 4 5 8 9 9 13 14 15 15 16 16 18 19 23 27 31 35 36 LCS_GDT Q 38 Q 38 4 6 16 3 3 4 4 8 9 9 13 14 15 15 16 16 18 19 23 27 31 35 36 LCS_GDT D 39 D 39 4 9 16 3 4 5 5 8 9 9 13 14 15 15 16 16 18 19 23 27 31 35 36 LCS_GDT V 40 V 40 5 9 16 3 5 5 8 8 9 10 12 14 15 15 16 16 18 18 20 27 31 34 36 LCS_GDT Y 41 Y 41 5 9 16 3 5 5 8 8 9 10 13 14 15 15 16 16 18 18 23 27 31 35 41 LCS_GDT V 42 V 42 5 9 16 3 5 5 8 8 9 10 13 14 15 15 16 16 18 18 20 23 31 39 41 LCS_GDT Q 43 Q 43 5 9 16 3 5 5 8 8 9 10 13 14 15 15 16 16 18 18 20 27 31 39 41 LCS_GDT I 44 I 44 5 9 16 3 5 5 8 8 9 10 13 14 15 15 16 16 18 18 23 27 31 39 41 LCS_GDT D 45 D 45 4 9 16 3 3 5 8 8 9 10 13 14 15 15 16 16 18 21 23 27 31 35 36 LCS_GDT R 46 R 46 4 9 16 3 3 5 8 8 9 10 13 14 15 15 16 16 18 21 23 29 35 39 41 LCS_GDT D 47 D 47 4 9 62 0 3 5 8 8 9 10 11 13 15 15 16 16 19 21 26 29 35 39 52 LCS_GDT G 48 G 48 4 5 68 0 3 4 4 5 7 10 11 13 13 14 15 16 18 21 26 28 35 39 41 LCS_GDT R 49 R 49 4 6 68 3 3 4 5 6 9 10 11 13 13 14 15 16 16 21 26 29 35 43 52 LCS_GDT H 50 H 50 4 6 68 3 4 4 5 6 6 10 11 13 13 13 15 16 18 35 42 49 57 61 61 LCS_GDT L 51 L 51 4 6 68 3 4 4 5 6 6 7 8 13 13 13 15 16 20 34 56 60 64 65 65 LCS_GDT S 52 S 52 4 55 68 3 4 4 5 6 8 24 43 53 57 60 64 64 64 64 64 64 64 65 65 LCS_GDT P 53 P 53 4 55 68 2 8 18 40 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT G 54 G 54 10 55 68 3 9 22 30 45 50 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT G 55 G 55 10 55 68 7 21 35 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT T 56 T 56 19 55 68 10 21 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 57 E 57 19 55 68 10 21 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT Y 58 Y 58 19 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT T 59 T 59 19 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT L 60 L 60 19 55 68 9 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT D 61 D 61 19 55 68 10 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT G 62 G 62 19 55 68 10 21 35 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT Y 63 Y 63 19 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT N 64 N 64 19 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT A 65 A 65 19 55 68 4 13 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT S 66 S 66 19 55 68 4 23 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT G 67 G 67 19 55 68 4 23 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 68 K 68 19 55 68 8 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 69 K 69 19 55 68 8 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 70 E 70 19 55 68 10 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 71 E 71 19 55 68 4 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT V 72 V 72 19 55 68 10 21 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT T 73 T 73 19 55 68 4 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT F 74 F 74 19 55 68 7 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT F 75 F 75 18 55 68 10 21 35 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT A 76 A 76 18 55 68 10 21 32 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT G 77 G 77 18 55 68 10 21 29 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 78 K 78 18 55 68 7 21 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 79 E 79 18 55 68 7 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT L 80 L 80 18 55 68 5 21 35 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT R 81 R 81 18 55 68 3 21 29 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 82 K 82 18 55 68 3 21 33 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT N 83 N 83 18 55 68 7 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT A 84 A 84 17 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT Y 85 Y 85 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT L 86 L 86 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 87 K 87 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT V 88 V 88 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 89 K 89 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT A 90 A 90 14 55 68 3 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 91 K 91 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT G 92 G 92 14 55 68 5 22 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 93 K 93 4 55 68 3 3 7 8 13 17 40 53 54 58 63 64 64 64 64 64 64 64 65 65 LCS_GDT Y 94 Y 94 10 55 68 5 22 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT V 95 V 95 10 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 96 E 96 10 55 68 6 21 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT T 97 T 97 14 55 68 6 23 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT W 98 W 98 14 55 68 7 23 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 99 E 99 14 55 68 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 100 E 100 14 55 68 8 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT V 101 V 101 14 55 68 7 17 36 45 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 102 K 102 14 55 68 4 15 36 45 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT F 103 F 103 14 55 68 4 21 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT E 104 E 104 14 55 68 4 13 27 43 47 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT D 105 D 105 14 55 68 4 13 18 38 46 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT M 106 M 106 14 55 68 7 13 21 38 46 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT P 107 P 107 14 55 68 4 13 18 22 36 44 54 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT D 108 D 108 14 54 68 6 13 18 23 36 48 54 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT S 109 S 109 14 22 68 7 13 18 22 36 46 54 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT V 110 V 110 14 22 68 6 13 18 28 41 49 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT Q 111 Q 111 14 22 68 6 8 9 19 24 50 55 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT S 112 S 112 9 22 68 6 8 10 20 28 46 54 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 113 K 113 9 22 68 6 8 17 20 26 39 54 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT L 114 L 114 9 22 68 6 8 10 17 23 28 45 56 62 62 63 64 64 64 64 64 64 64 65 65 LCS_GDT K 115 K 115 9 22 68 3 8 10 17 23 34 53 58 62 62 63 64 64 64 64 64 64 64 65 65 LCS_AVERAGE LCS_A: 48.43 ( 16.06 53.27 75.97 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 24 36 46 49 52 55 58 62 62 63 64 64 64 64 64 64 64 65 65 GDT PERCENT_AT 16.25 30.00 45.00 57.50 61.25 65.00 68.75 72.50 77.50 77.50 78.75 80.00 80.00 80.00 80.00 80.00 80.00 80.00 81.25 81.25 GDT RMS_LOCAL 0.37 0.72 0.96 1.28 1.38 1.58 1.78 2.04 2.34 2.34 2.45 2.57 2.57 2.57 2.57 2.57 2.57 2.57 2.95 2.95 GDT RMS_ALL_AT 9.51 9.40 9.40 9.33 9.31 9.27 9.32 9.36 9.52 9.52 9.50 9.47 9.47 9.47 9.47 9.47 9.47 9.47 9.39 9.39 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA H 36 H 36 24.283 6 0.124 0.124 24.612 0.000 0.000 LGA Q 37 Q 37 24.099 5 0.637 0.637 25.457 0.000 0.000 LGA Q 38 Q 38 21.511 5 0.177 0.177 21.767 0.000 0.000 LGA D 39 D 39 20.478 4 0.160 0.160 22.228 0.000 0.000 LGA V 40 V 40 20.576 3 0.563 0.563 20.576 0.000 0.000 LGA Y 41 Y 41 19.442 8 0.234 0.234 19.442 0.000 0.000 LGA V 42 V 42 19.245 3 0.219 0.219 21.011 0.000 0.000 LGA Q 43 Q 43 20.119 5 0.250 0.250 20.119 0.000 0.000 LGA I 44 I 44 20.323 4 0.447 0.447 23.040 0.000 0.000 LGA D 45 D 45 22.946 4 0.124 0.124 24.217 0.000 0.000 LGA R 46 R 46 20.630 7 0.652 0.652 20.772 0.000 0.000 LGA D 47 D 47 20.453 4 0.606 0.606 21.384 0.000 0.000 LGA G 48 G 48 19.781 0 0.426 0.426 21.444 0.000 0.000 LGA R 49 R 49 19.483 7 0.635 0.635 19.483 0.000 0.000 LGA H 50 H 50 15.356 6 0.502 0.502 16.445 0.000 0.000 LGA L 51 L 51 11.886 4 0.292 0.292 12.591 0.714 0.357 LGA S 52 S 52 6.853 2 0.639 0.639 8.595 9.167 6.111 LGA P 53 P 53 3.419 3 0.052 0.052 5.402 39.405 22.517 LGA G 54 G 54 3.453 0 0.552 0.552 3.453 57.262 57.262 LGA G 55 G 55 1.368 0 0.040 0.040 1.938 79.286 79.286 LGA T 56 T 56 0.621 3 0.060 0.060 1.088 88.214 50.408 LGA E 57 E 57 1.029 5 0.076 0.076 1.029 88.214 39.206 LGA Y 58 Y 58 0.622 8 0.252 0.252 0.887 92.857 30.952 LGA T 59 T 59 0.598 3 0.046 0.046 0.607 92.857 53.061 LGA L 60 L 60 0.659 4 0.095 0.095 1.039 88.214 44.107 LGA D 61 D 61 1.070 4 0.122 0.122 1.479 83.690 41.845 LGA G 62 G 62 2.184 0 0.209 0.209 2.231 68.810 68.810 LGA Y 63 Y 63 0.791 8 0.119 0.119 1.063 88.214 29.405 LGA N 64 N 64 1.146 4 0.047 0.047 1.820 79.405 39.702 LGA A 65 A 65 2.487 1 0.035 0.035 3.349 61.190 48.952 LGA S 66 S 66 3.076 2 0.317 0.317 3.076 57.262 38.175 LGA G 67 G 67 2.960 0 0.159 0.159 3.193 53.571 53.571 LGA K 68 K 68 2.496 5 0.170 0.170 2.522 64.881 28.836 LGA K 69 K 69 2.257 5 0.138 0.138 2.820 62.857 27.937 LGA E 70 E 70 1.875 5 0.083 0.083 2.045 70.833 31.481 LGA E 71 E 71 1.899 5 0.096 0.096 2.209 70.833 31.481 LGA V 72 V 72 1.881 3 0.031 0.031 1.881 79.405 45.374 LGA T 73 T 73 1.175 3 0.093 0.093 2.347 77.262 44.150 LGA F 74 F 74 0.908 7 0.122 0.122 0.908 90.476 32.900 LGA F 75 F 75 1.642 7 0.061 0.061 2.379 70.833 25.758 LGA A 76 A 76 1.624 1 0.061 0.061 1.624 77.143 61.714 LGA G 77 G 77 1.651 0 0.229 0.229 1.764 75.000 75.000 LGA K 78 K 78 1.236 5 0.035 0.035 1.321 81.429 36.190 LGA E 79 E 79 1.382 5 0.042 0.042 1.582 77.143 34.286 LGA L 80 L 80 2.029 4 0.119 0.119 2.245 66.786 33.393 LGA R 81 R 81 2.806 7 0.131 0.131 2.806 60.952 22.165 LGA K 82 K 82 2.372 5 0.080 0.080 2.548 66.905 29.735 LGA N 83 N 83 0.323 4 0.053 0.053 1.015 90.595 45.298 LGA A 84 A 84 1.435 1 0.040 0.040 1.435 81.429 65.143 LGA Y 85 Y 85 1.424 8 0.118 0.118 1.972 79.286 26.429 LGA L 86 L 86 0.643 4 0.114 0.114 0.821 90.476 45.238 LGA K 87 K 87 0.809 5 0.082 0.082 1.153 88.214 39.206 LGA V 88 V 88 0.832 3 0.035 0.035 0.832 90.476 51.701 LGA K 89 K 89 0.417 5 0.058 0.058 1.317 90.595 40.265 LGA A 90 A 90 0.839 1 0.096 0.096 0.839 90.476 72.381 LGA K 91 K 91 0.460 5 0.090 0.090 0.622 92.857 41.270 LGA G 92 G 92 1.915 0 0.471 0.471 5.467 55.952 55.952 LGA K 93 K 93 6.499 5 0.022 0.022 6.499 26.786 11.905 LGA Y 94 Y 94 0.679 8 0.499 0.499 1.962 83.810 27.937 LGA V 95 V 95 0.708 3 0.076 0.076 0.759 90.476 51.701 LGA E 96 E 96 1.272 5 0.104 0.104 1.591 81.548 36.243 LGA T 97 T 97 1.439 3 0.047 0.047 1.618 77.143 44.082 LGA W 98 W 98 1.954 10 0.032 0.032 1.954 77.143 22.041 LGA E 99 E 99 1.062 5 0.073 0.073 1.427 85.952 38.201 LGA E 100 E 100 0.542 5 0.099 0.099 1.645 83.810 37.249 LGA V 101 V 101 1.297 3 0.042 0.042 1.314 83.690 47.823 LGA K 102 K 102 1.792 5 0.050 0.050 1.792 77.143 34.286 LGA F 103 F 103 1.109 7 0.145 0.145 2.064 77.262 28.095 LGA E 104 E 104 2.097 5 0.106 0.106 2.771 67.024 29.788 LGA D 105 D 105 2.801 4 0.132 0.132 3.003 57.262 28.631 LGA M 106 M 106 2.577 4 0.043 0.043 3.463 55.476 27.738 LGA P 107 P 107 4.487 3 0.021 0.021 4.487 41.905 23.946 LGA D 108 D 108 4.119 4 0.117 0.117 4.572 40.476 20.238 LGA S 109 S 109 4.733 2 0.018 0.018 4.733 34.286 22.857 LGA V 110 V 110 3.490 3 0.041 0.041 3.921 48.333 27.619 LGA Q 111 Q 111 3.314 5 0.080 0.080 4.636 43.690 19.418 LGA S 112 S 112 4.630 2 0.147 0.147 6.852 27.381 18.254 LGA K 113 K 113 5.639 5 0.166 0.166 6.861 21.905 9.735 LGA L 114 L 114 5.625 4 0.661 0.661 6.385 21.548 10.774 LGA K 115 K 115 5.148 6 0.597 0.597 6.718 19.762 7.905 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 80 320 320 100.00 641 320 49.92 80 SUMMARY(RMSD_GDC): 8.697 8.774 8.774 54.940 29.668 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 80 80 4.0 58 2.04 60.000 61.716 2.707 LGA_LOCAL RMSD: 2.042 Number of atoms: 58 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.356 Number of assigned atoms: 80 Std_ASGN_ATOMS RMSD: 8.697 Standard rmsd on all 80 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.207545 * X + -0.968566 * Y + 0.137130 * Z + 48.705883 Y_new = 0.141676 * X + -0.108942 * Y + -0.983900 * Z + 10.117365 Z_new = 0.967912 * X + 0.223631 * Y + 0.114612 * Z + -11.668308 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.598971 -1.316783 1.097196 [DEG: 34.3185 -75.4461 62.8647 ] ZXZ: 0.138481 1.455932 1.343736 [DEG: 7.9344 83.4188 76.9904 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0530AL285_1-D1 REMARK 2: T0530-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0530AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 80 80 4.0 58 2.04 61.716 8.70 REMARK ---------------------------------------------------------- MOLECULE T0530AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2k5qA ATOM 53 N HIS 36 38.877 9.676 -15.019 1.00 0.00 N ATOM 54 CA HIS 36 37.982 8.854 -14.200 1.00 0.00 C ATOM 55 C HIS 36 37.468 7.622 -14.962 1.00 0.00 C ATOM 56 O HIS 36 36.482 7.691 -15.705 1.00 0.00 O ATOM 57 N GLN 37 38.178 6.510 -14.801 1.00 0.00 N ATOM 58 CA GLN 37 37.772 5.218 -15.370 1.00 0.00 C ATOM 59 C GLN 37 37.066 4.344 -14.320 1.00 0.00 C ATOM 60 O GLN 37 36.115 3.626 -14.633 1.00 0.00 O ATOM 61 N GLN 38 37.542 4.411 -13.077 1.00 0.00 N ATOM 62 CA GLN 38 36.937 3.664 -11.965 1.00 0.00 C ATOM 63 C GLN 38 35.832 4.485 -11.276 1.00 0.00 C ATOM 64 O GLN 38 36.076 5.576 -10.760 1.00 0.00 O ATOM 65 N ASP 39 34.611 3.956 -11.290 1.00 0.00 N ATOM 66 CA ASP 39 33.439 4.680 -10.776 1.00 0.00 C ATOM 67 C ASP 39 32.585 3.815 -9.821 1.00 0.00 C ATOM 68 O ASP 39 32.688 2.584 -9.815 1.00 0.00 O ATOM 69 N VAL 40 31.753 4.478 -9.011 1.00 0.00 N ATOM 70 CA VAL 40 30.761 3.789 -8.183 1.00 0.00 C ATOM 71 C VAL 40 31.308 3.002 -6.992 1.00 0.00 C ATOM 72 O VAL 40 30.572 2.236 -6.368 1.00 0.00 O ATOM 73 N TYR 41 32.587 3.156 -6.675 1.00 0.00 N ATOM 74 CA TYR 41 33.158 2.489 -5.497 1.00 0.00 C ATOM 75 C TYR 41 32.665 3.119 -4.179 1.00 0.00 C ATOM 76 O TYR 41 33.309 4.015 -3.634 1.00 0.00 O ATOM 77 N VAL 42 31.518 2.665 -3.677 1.00 0.00 N ATOM 78 CA VAL 42 31.013 3.136 -2.380 1.00 0.00 C ATOM 79 C VAL 42 31.669 2.364 -1.218 1.00 0.00 C ATOM 80 O VAL 42 31.400 1.180 -1.008 1.00 0.00 O ATOM 81 N GLN 43 32.540 3.039 -0.467 1.00 0.00 N ATOM 82 CA GLN 43 33.228 2.422 0.667 1.00 0.00 C ATOM 83 C GLN 43 32.414 2.569 1.963 1.00 0.00 C ATOM 84 O GLN 43 32.585 3.512 2.741 1.00 0.00 O ATOM 85 N ILE 44 31.513 1.617 2.185 1.00 0.00 N ATOM 86 CA ILE 44 30.629 1.629 3.363 1.00 0.00 C ATOM 87 C ILE 44 31.420 1.468 4.674 1.00 0.00 C ATOM 88 O ILE 44 30.865 1.558 5.766 1.00 0.00 O ATOM 89 N ASP 45 32.719 1.253 4.549 1.00 0.00 N ATOM 90 CA ASP 45 33.619 1.175 5.707 1.00 0.00 C ATOM 91 C ASP 45 33.673 2.511 6.469 1.00 0.00 C ATOM 92 O ASP 45 34.217 2.591 7.570 1.00 0.00 O ATOM 93 N ARG 46 33.104 3.556 5.866 1.00 0.00 N ATOM 94 CA ARG 46 33.013 4.884 6.487 1.00 0.00 C ATOM 95 C ARG 46 31.826 5.004 7.459 1.00 0.00 C ATOM 96 O ARG 46 31.467 6.107 7.858 1.00 0.00 O ATOM 97 N ASP 47 31.228 3.873 7.842 1.00 0.00 N ATOM 98 CA ASP 47 30.108 3.877 8.795 1.00 0.00 C ATOM 99 C ASP 47 30.436 4.696 10.061 1.00 0.00 C ATOM 100 O ASP 47 29.609 5.487 10.522 1.00 0.00 O ATOM 101 N GLY 48 31.642 4.474 10.607 1.00 0.00 N ATOM 102 CA GLY 48 32.174 5.216 11.769 1.00 0.00 C ATOM 103 C GLY 48 31.150 5.392 12.912 1.00 0.00 C ATOM 104 O GLY 48 31.181 4.659 13.900 1.00 0.00 O ATOM 105 N ARG 49 30.251 6.366 12.778 1.00 0.00 N ATOM 106 CA ARG 49 29.217 6.619 13.792 1.00 0.00 C ATOM 107 C ARG 49 28.226 5.446 13.878 1.00 0.00 C ATOM 108 O ARG 49 27.745 5.089 14.956 1.00 0.00 O ATOM 109 N HIS 50 27.939 4.841 12.730 1.00 0.00 N ATOM 110 CA HIS 50 26.970 3.752 12.669 1.00 0.00 C ATOM 111 C HIS 50 25.792 4.070 11.756 1.00 0.00 C ATOM 112 O HIS 50 24.657 3.669 12.021 1.00 0.00 O ATOM 113 N LEU 51 26.061 4.810 10.684 1.00 0.00 N ATOM 114 CA LEU 51 25.019 5.214 9.732 1.00 0.00 C ATOM 115 C LEU 51 25.269 4.611 8.341 1.00 0.00 C ATOM 116 O LEU 51 26.226 3.861 8.133 1.00 0.00 O ATOM 117 N SER 52 24.407 4.952 7.389 1.00 0.00 N ATOM 118 CA SER 52 24.472 4.386 6.039 1.00 0.00 C ATOM 119 C SER 52 25.201 5.311 5.044 1.00 0.00 C ATOM 120 O SER 52 25.185 5.058 3.839 1.00 0.00 O ATOM 121 N PRO 53 25.848 6.371 5.539 1.00 0.00 N ATOM 122 CA PRO 53 26.578 7.291 4.652 1.00 0.00 C ATOM 123 C PRO 53 27.858 6.636 4.104 1.00 0.00 C ATOM 124 O PRO 53 28.566 5.925 4.821 1.00 0.00 O ATOM 125 N GLY 54 28.139 6.869 2.821 1.00 0.00 N ATOM 126 CA GLY 54 29.238 6.182 2.126 1.00 0.00 C ATOM 127 C GLY 54 30.070 7.152 1.270 1.00 0.00 C ATOM 128 O GLY 54 29.521 7.935 0.488 1.00 0.00 O ATOM 129 N GLY 55 31.390 7.084 1.409 1.00 0.00 N ATOM 130 CA GLY 55 32.304 7.829 0.539 1.00 0.00 C ATOM 131 C GLY 55 32.587 7.025 -0.743 1.00 0.00 C ATOM 132 O GLY 55 32.387 5.809 -0.780 1.00 0.00 O ATOM 133 N THR 56 33.044 7.700 -1.795 1.00 0.00 N ATOM 134 CA THR 56 33.370 7.030 -3.062 1.00 0.00 C ATOM 135 C THR 56 34.887 6.974 -3.291 1.00 0.00 C ATOM 136 O THR 56 35.601 7.940 -3.016 1.00 0.00 O ATOM 137 N GLU 57 35.371 5.842 -3.800 1.00 0.00 N ATOM 138 CA GLU 57 36.814 5.632 -4.003 1.00 0.00 C ATOM 139 C GLU 57 37.209 5.801 -5.475 1.00 0.00 C ATOM 140 O GLU 57 36.650 5.151 -6.356 1.00 0.00 O ATOM 141 N TYR 58 38.175 6.678 -5.731 1.00 0.00 N ATOM 142 CA TYR 58 38.730 6.844 -7.077 1.00 0.00 C ATOM 143 C TYR 58 40.252 6.627 -7.073 1.00 0.00 C ATOM 144 O TYR 58 41.024 7.564 -6.859 1.00 0.00 O ATOM 145 N THR 59 40.674 5.376 -7.268 1.00 0.00 N ATOM 146 CA THR 59 42.099 5.041 -7.353 1.00 0.00 C ATOM 147 C THR 59 42.527 4.860 -8.813 1.00 0.00 C ATOM 148 O THR 59 41.989 4.013 -9.527 1.00 0.00 O ATOM 149 N LEU 60 43.499 5.650 -9.245 1.00 0.00 N ATOM 150 CA LEU 60 43.891 5.687 -10.656 1.00 0.00 C ATOM 151 C LEU 60 45.339 6.165 -10.851 1.00 0.00 C ATOM 152 O LEU 60 46.025 6.525 -9.890 1.00 0.00 O ATOM 153 N ASP 61 45.796 6.157 -12.105 1.00 0.00 N ATOM 154 CA ASP 61 47.150 6.610 -12.448 1.00 0.00 C ATOM 155 C ASP 61 47.152 8.089 -12.859 1.00 0.00 C ATOM 156 O ASP 61 46.519 8.475 -13.846 1.00 0.00 O ATOM 157 N GLY 62 47.863 8.910 -12.095 1.00 0.00 N ATOM 158 CA GLY 62 47.937 10.337 -12.385 1.00 0.00 C ATOM 159 C GLY 62 49.197 10.729 -13.142 1.00 0.00 C ATOM 160 O GLY 62 50.299 10.304 -12.788 1.00 0.00 O ATOM 161 N TYR 63 49.033 11.540 -14.187 1.00 0.00 N ATOM 162 CA TYR 63 50.162 11.989 -15.009 1.00 0.00 C ATOM 163 C TYR 63 50.555 13.441 -14.669 1.00 0.00 C ATOM 164 O TYR 63 49.762 14.368 -14.849 1.00 0.00 O ATOM 165 N ASN 64 51.775 13.622 -14.165 1.00 0.00 N ATOM 166 CA ASN 64 52.285 14.949 -13.783 1.00 0.00 C ATOM 167 C ASN 64 52.835 15.743 -14.984 1.00 0.00 C ATOM 168 O ASN 64 52.831 15.270 -16.124 1.00 0.00 O ATOM 169 N ALA 65 53.317 16.957 -14.707 1.00 0.00 N ATOM 170 CA ALA 65 53.874 17.834 -15.745 1.00 0.00 C ATOM 171 C ALA 65 55.165 17.257 -16.353 1.00 0.00 C ATOM 172 O ALA 65 55.439 17.449 -17.538 1.00 0.00 O ATOM 173 N SER 66 55.956 16.554 -15.540 1.00 0.00 N ATOM 174 CA SER 66 57.188 15.928 -16.020 1.00 0.00 C ATOM 175 C SER 66 56.870 14.803 -17.016 1.00 0.00 C ATOM 176 O SER 66 57.410 14.757 -18.127 1.00 0.00 O ATOM 177 N GLY 67 55.972 13.913 -16.615 1.00 0.00 N ATOM 178 CA GLY 67 55.587 12.789 -17.454 1.00 0.00 C ATOM 179 C GLY 67 55.810 11.443 -16.774 1.00 0.00 C ATOM 180 O GLY 67 56.287 10.493 -17.399 1.00 0.00 O ATOM 181 N LYS 68 55.486 11.366 -15.487 1.00 0.00 N ATOM 182 CA LYS 68 55.610 10.119 -14.722 1.00 0.00 C ATOM 183 C LYS 68 54.226 9.503 -14.454 1.00 0.00 C ATOM 184 O LYS 68 53.200 10.029 -14.900 1.00 0.00 O ATOM 185 N LYS 69 54.204 8.371 -13.753 1.00 0.00 N ATOM 186 CA LYS 69 52.943 7.723 -13.362 1.00 0.00 C ATOM 187 C LYS 69 52.821 7.635 -11.831 1.00 0.00 C ATOM 188 O LYS 69 53.528 6.861 -11.178 1.00 0.00 O ATOM 189 N GLU 70 51.939 8.451 -11.262 1.00 0.00 N ATOM 190 CA GLU 70 51.717 8.480 -9.811 1.00 0.00 C ATOM 191 C GLU 70 50.486 7.646 -9.426 1.00 0.00 C ATOM 192 O GLU 70 49.444 7.732 -10.075 1.00 0.00 O ATOM 193 N GLU 71 50.605 6.844 -8.371 1.00 0.00 N ATOM 194 CA GLU 71 49.466 6.065 -7.868 1.00 0.00 C ATOM 195 C GLU 71 48.765 6.818 -6.727 1.00 0.00 C ATOM 196 O GLU 71 49.369 7.078 -5.682 1.00 0.00 O ATOM 197 N VAL 72 47.499 7.172 -6.926 1.00 0.00 N ATOM 198 CA VAL 72 46.737 7.908 -5.911 1.00 0.00 C ATOM 199 C VAL 72 45.281 7.431 -5.835 1.00 0.00 C ATOM 200 O VAL 72 44.653 7.131 -6.854 1.00 0.00 O ATOM 201 N THR 73 44.760 7.348 -4.615 1.00 0.00 N ATOM 202 CA THR 73 43.351 7.033 -4.384 1.00 0.00 C ATOM 203 C THR 73 42.707 8.104 -3.490 1.00 0.00 C ATOM 204 O THR 73 43.029 8.225 -2.306 1.00 0.00 O ATOM 205 N PHE 74 41.817 8.904 -4.068 1.00 0.00 N ATOM 206 CA PHE 74 41.123 9.949 -3.308 1.00 0.00 C ATOM 207 C PHE 74 39.647 9.593 -3.109 1.00 0.00 C ATOM 208 O PHE 74 38.974 9.128 -4.031 1.00 0.00 O ATOM 209 N PHE 75 39.161 9.786 -1.888 1.00 0.00 N ATOM 210 CA PHE 75 37.762 9.511 -1.550 1.00 0.00 C ATOM 211 C PHE 75 36.932 10.799 -1.554 1.00 0.00 C ATOM 212 O PHE 75 37.325 11.809 -0.959 1.00 0.00 O ATOM 213 N ALA 76 35.789 10.761 -2.232 1.00 0.00 N ATOM 214 CA ALA 76 34.906 11.925 -2.338 1.00 0.00 C ATOM 215 C ALA 76 33.548 11.665 -1.670 1.00 0.00 C ATOM 216 O ALA 76 33.012 10.560 -1.745 1.00 0.00 O ATOM 217 N GLY 77 33.009 12.688 -1.007 1.00 0.00 N ATOM 218 CA GLY 77 31.687 12.602 -0.374 1.00 0.00 C ATOM 219 C GLY 77 30.592 12.366 -1.430 1.00 0.00 C ATOM 220 O GLY 77 29.628 11.637 -1.194 1.00 0.00 O ATOM 221 N LYS 78 30.763 12.970 -2.605 1.00 0.00 N ATOM 222 CA LYS 78 29.831 12.780 -3.720 1.00 0.00 C ATOM 223 C LYS 78 30.474 11.971 -4.854 1.00 0.00 C ATOM 224 O LYS 78 31.697 11.880 -4.947 1.00 0.00 O ATOM 225 N GLU 79 29.642 11.402 -5.724 1.00 0.00 N ATOM 226 CA GLU 79 30.133 10.735 -6.930 1.00 0.00 C ATOM 227 C GLU 79 30.329 11.773 -8.052 1.00 0.00 C ATOM 228 O GLU 79 29.395 12.496 -8.412 1.00 0.00 O ATOM 229 N LEU 80 31.542 11.854 -8.589 1.00 0.00 N ATOM 230 CA LEU 80 31.900 12.916 -9.542 1.00 0.00 C ATOM 231 C LEU 80 31.719 12.491 -11.013 1.00 0.00 C ATOM 232 O LEU 80 31.205 11.411 -11.312 1.00 0.00 O ATOM 233 N ARG 81 32.133 13.367 -11.931 1.00 0.00 N ATOM 234 CA ARG 81 31.920 13.157 -13.365 1.00 0.00 C ATOM 235 C ARG 81 32.871 12.101 -13.954 1.00 0.00 C ATOM 236 O ARG 81 34.080 12.320 -14.072 1.00 0.00 O ATOM 237 N LYS 82 32.301 10.966 -14.343 1.00 0.00 N ATOM 238 CA LYS 82 33.062 9.870 -14.946 1.00 0.00 C ATOM 239 C LYS 82 33.368 10.144 -16.431 1.00 0.00 C ATOM 240 O LYS 82 32.683 10.941 -17.077 1.00 0.00 O ATOM 241 N ASN 83 34.414 9.487 -16.952 1.00 0.00 N ATOM 242 CA ASN 83 34.874 9.679 -18.345 1.00 0.00 C ATOM 243 C ASN 83 35.489 11.084 -18.565 1.00 0.00 C ATOM 244 O ASN 83 35.906 11.430 -19.672 1.00 0.00 O ATOM 245 N ALA 84 35.568 11.881 -17.503 1.00 0.00 N ATOM 246 CA ALA 84 36.147 13.226 -17.587 1.00 0.00 C ATOM 247 C ALA 84 37.648 13.227 -17.251 1.00 0.00 C ATOM 248 O ALA 84 38.175 12.265 -16.680 1.00 0.00 O ATOM 249 N TYR 85 38.326 14.312 -17.623 1.00 0.00 N ATOM 250 CA TYR 85 39.739 14.512 -17.285 1.00 0.00 C ATOM 251 C TYR 85 39.856 15.379 -16.026 1.00 0.00 C ATOM 252 O TYR 85 39.560 16.571 -16.045 1.00 0.00 O ATOM 253 N LEU 86 40.279 14.779 -14.928 1.00 0.00 N ATOM 254 CA LEU 86 40.259 15.453 -13.633 1.00 0.00 C ATOM 255 C LEU 86 41.666 15.947 -13.243 1.00 0.00 C ATOM 256 O LEU 86 42.617 15.169 -13.180 1.00 0.00 O ATOM 257 N LYS 87 41.788 17.250 -12.990 1.00 0.00 N ATOM 258 CA LYS 87 43.057 17.851 -12.565 1.00 0.00 C ATOM 259 C LYS 87 43.199 17.794 -11.035 1.00 0.00 C ATOM 260 O LYS 87 42.538 18.545 -10.312 1.00 0.00 O ATOM 261 N VAL 88 44.049 16.893 -10.549 1.00 0.00 N ATOM 262 CA VAL 88 44.226 16.691 -9.106 1.00 0.00 C ATOM 263 C VAL 88 45.450 17.446 -8.561 1.00 0.00 C ATOM 264 O VAL 88 46.575 17.226 -9.007 1.00 0.00 O ATOM 265 N LYS 89 45.226 18.327 -7.586 1.00 0.00 N ATOM 266 CA LYS 89 46.323 19.055 -6.930 1.00 0.00 C ATOM 267 C LYS 89 47.126 18.126 -5.998 1.00 0.00 C ATOM 268 O LYS 89 46.579 17.185 -5.420 1.00 0.00 O ATOM 269 N ALA 90 48.418 18.407 -5.844 1.00 0.00 N ATOM 270 CA ALA 90 49.288 17.582 -5.008 1.00 0.00 C ATOM 271 C ALA 90 50.317 18.425 -4.229 1.00 0.00 C ATOM 272 O ALA 90 50.928 19.347 -4.770 1.00 0.00 O ATOM 273 N LYS 91 50.486 18.100 -2.948 1.00 0.00 N ATOM 274 CA LYS 91 51.530 18.707 -2.102 1.00 0.00 C ATOM 275 C LYS 91 52.074 17.671 -1.112 1.00 0.00 C ATOM 276 O LYS 91 51.332 16.805 -0.650 1.00 0.00 O ATOM 277 N GLY 92 53.357 17.767 -0.774 1.00 0.00 N ATOM 278 CA GLY 92 54.031 16.736 0.033 1.00 0.00 C ATOM 279 C GLY 92 53.371 16.497 1.411 1.00 0.00 C ATOM 280 O GLY 92 53.276 15.355 1.864 1.00 0.00 O ATOM 281 N LYS 93 50.296 16.582 2.525 1.00 0.00 N ATOM 282 CA LYS 93 48.988 15.899 2.628 1.00 0.00 C ATOM 283 C LYS 93 48.603 15.142 1.340 1.00 0.00 C ATOM 284 O LYS 93 47.527 14.546 1.252 1.00 0.00 O ATOM 285 N TYR 94 49.486 15.145 0.349 1.00 0.00 N ATOM 286 CA TYR 94 49.207 14.457 -0.907 1.00 0.00 C ATOM 287 C TYR 94 48.151 15.157 -1.759 1.00 0.00 C ATOM 288 O TYR 94 48.485 15.915 -2.666 1.00 0.00 O ATOM 289 N VAL 95 46.875 14.921 -1.451 1.00 0.00 N ATOM 290 CA VAL 95 45.757 15.459 -2.247 1.00 0.00 C ATOM 291 C VAL 95 44.720 16.179 -1.362 1.00 0.00 C ATOM 292 O VAL 95 44.497 15.799 -0.209 1.00 0.00 O ATOM 293 N GLU 96 44.092 17.224 -1.909 1.00 0.00 N ATOM 294 CA GLU 96 43.014 17.953 -1.208 1.00 0.00 C ATOM 295 C GLU 96 42.023 18.577 -2.203 1.00 0.00 C ATOM 296 O GLU 96 40.831 18.267 -2.195 1.00 0.00 O ATOM 297 N THR 97 42.525 19.465 -3.058 1.00 0.00 N ATOM 298 CA THR 97 41.694 20.149 -4.057 1.00 0.00 C ATOM 299 C THR 97 41.858 19.531 -5.455 1.00 0.00 C ATOM 300 O THR 97 42.940 19.073 -5.823 1.00 0.00 O ATOM 301 N TRP 98 40.773 19.518 -6.225 1.00 0.00 N ATOM 302 CA TRP 98 40.785 18.965 -7.585 1.00 0.00 C ATOM 303 C TRP 98 39.595 19.479 -8.415 1.00 0.00 C ATOM 304 O TRP 98 38.540 19.806 -7.868 1.00 0.00 O ATOM 305 N GLU 99 39.770 19.560 -9.740 1.00 0.00 N ATOM 306 CA GLU 99 38.710 20.070 -10.632 1.00 0.00 C ATOM 307 C GLU 99 38.486 19.163 -11.854 1.00 0.00 C ATOM 308 O GLU 99 39.415 18.551 -12.380 1.00 0.00 O ATOM 309 N GLU 100 37.235 19.120 -12.313 1.00 0.00 N ATOM 310 CA GLU 100 36.814 18.260 -13.429 1.00 0.00 C ATOM 311 C GLU 100 36.809 19.033 -14.765 1.00 0.00 C ATOM 312 O GLU 100 36.081 20.018 -14.915 1.00 0.00 O ATOM 313 N VAL 101 37.609 18.589 -15.738 1.00 0.00 N ATOM 314 CA VAL 101 37.660 19.238 -17.061 1.00 0.00 C ATOM 315 C VAL 101 37.605 18.211 -18.210 1.00 0.00 C ATOM 316 O VAL 101 37.552 16.999 -17.987 1.00 0.00 O ATOM 317 N LYS 102 37.589 18.713 -19.442 1.00 0.00 N ATOM 318 CA LYS 102 37.622 17.865 -20.645 1.00 0.00 C ATOM 319 C LYS 102 38.878 18.164 -21.481 1.00 0.00 C ATOM 320 O LYS 102 39.502 19.214 -21.321 1.00 0.00 O ATOM 321 N PHE 103 39.235 17.256 -22.396 1.00 0.00 N ATOM 322 CA PHE 103 40.453 17.428 -23.211 1.00 0.00 C ATOM 323 C PHE 103 40.394 18.706 -24.067 1.00 0.00 C ATOM 324 O PHE 103 41.422 19.221 -24.500 1.00 0.00 O ATOM 325 N GLU 104 39.185 19.213 -24.302 1.00 0.00 N ATOM 326 CA GLU 104 38.995 20.460 -25.054 1.00 0.00 C ATOM 327 C GLU 104 39.397 21.683 -24.212 1.00 0.00 C ATOM 328 O GLU 104 39.904 22.676 -24.737 1.00 0.00 O ATOM 329 N ASP 105 39.168 21.595 -22.904 1.00 0.00 N ATOM 330 CA ASP 105 39.498 22.681 -21.976 1.00 0.00 C ATOM 331 C ASP 105 40.996 22.669 -21.624 1.00 0.00 C ATOM 332 O ASP 105 41.575 23.702 -21.286 1.00 0.00 O ATOM 333 N MET 106 41.612 21.492 -21.712 1.00 0.00 N ATOM 334 CA MET 106 43.054 21.340 -21.487 1.00 0.00 C ATOM 335 C MET 106 43.871 21.860 -22.686 1.00 0.00 C ATOM 336 O MET 106 43.369 21.914 -23.813 1.00 0.00 O ATOM 337 N PRO 107 45.136 22.273 -22.460 1.00 0.00 N ATOM 338 CA PRO 107 46.036 22.695 -23.549 1.00 0.00 C ATOM 339 C PRO 107 46.305 21.567 -24.560 1.00 0.00 C ATOM 340 O PRO 107 46.487 20.409 -24.176 1.00 0.00 O ATOM 341 N ASP 108 46.351 21.908 -25.849 1.00 0.00 N ATOM 342 CA ASP 108 46.615 20.919 -26.907 1.00 0.00 C ATOM 343 C ASP 108 47.936 20.167 -26.665 1.00 0.00 C ATOM 344 O ASP 108 48.108 19.027 -27.107 1.00 0.00 O ATOM 345 N SER 109 48.861 20.816 -25.953 1.00 0.00 N ATOM 346 CA SER 109 50.141 20.204 -25.571 1.00 0.00 C ATOM 347 C SER 109 49.938 18.881 -24.805 1.00 0.00 C ATOM 348 O SER 109 50.771 17.979 -24.880 1.00 0.00 O ATOM 349 N VAL 110 48.829 18.767 -24.076 1.00 0.00 N ATOM 350 CA VAL 110 48.496 17.526 -23.365 1.00 0.00 C ATOM 351 C VAL 110 48.353 16.353 -24.351 1.00 0.00 C ATOM 352 O VAL 110 48.777 15.230 -24.068 1.00 0.00 O ATOM 353 N GLN 111 47.774 16.636 -25.516 1.00 0.00 N ATOM 354 CA GLN 111 47.637 15.641 -26.588 1.00 0.00 C ATOM 355 C GLN 111 49.000 15.354 -27.242 1.00 0.00 C ATOM 356 O GLN 111 49.260 14.248 -27.715 1.00 0.00 O ATOM 357 N SER 112 49.869 16.366 -27.260 1.00 0.00 N ATOM 358 CA SER 112 51.242 16.213 -27.759 1.00 0.00 C ATOM 359 C SER 112 52.134 15.535 -26.703 1.00 0.00 C ATOM 360 O SER 112 53.282 15.170 -26.972 1.00 0.00 O ATOM 361 N LYS 113 51.598 15.390 -25.493 1.00 0.00 N ATOM 362 CA LYS 113 52.267 14.657 -24.415 1.00 0.00 C ATOM 363 C LYS 113 51.848 13.175 -24.450 1.00 0.00 C ATOM 364 O LYS 113 52.681 12.283 -24.632 1.00 0.00 O ATOM 365 N LEU 114 50.545 12.922 -24.285 1.00 0.00 N ATOM 366 CA LEU 114 49.980 11.567 -24.410 1.00 0.00 C ATOM 367 C LEU 114 48.923 11.517 -25.524 1.00 0.00 C ATOM 368 O LEU 114 48.037 12.369 -25.591 1.00 0.00 O ATOM 369 N LYS 115 49.007 10.500 -26.380 1.00 0.00 N ATOM 370 CA LYS 115 48.044 10.353 -27.472 1.00 0.00 C ATOM 371 C LYS 115 48.573 10.832 -28.823 1.00 0.00 C ATOM 372 O LYS 115 47.796 11.071 -29.752 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 320 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 57.78 67.7 158 100.0 158 ARMSMC SECONDARY STRUCTURE . . 54.84 69.4 98 100.0 98 ARMSMC SURFACE . . . . . . . . 63.93 67.6 102 100.0 102 ARMSMC BURIED . . . . . . . . 44.42 67.9 56 100.0 56 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 62 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 45 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 16 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.70 (Number of atoms: 80) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.70 80 100.0 80 CRMSCA CRN = ALL/NP . . . . . 0.1087 CRMSCA SECONDARY STRUCTURE . . 8.53 49 100.0 49 CRMSCA SURFACE . . . . . . . . 8.70 52 100.0 52 CRMSCA BURIED . . . . . . . . 8.69 28 100.0 28 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.77 320 81.4 393 CRMSMC SECONDARY STRUCTURE . . 8.54 196 80.7 243 CRMSMC SURFACE . . . . . . . . 8.75 208 81.2 256 CRMSMC BURIED . . . . . . . . 8.82 112 81.8 137 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 321 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 277 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 219 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 216 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 105 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.77 320 49.9 641 CRMSALL SECONDARY STRUCTURE . . 8.54 196 47.2 415 CRMSALL SURFACE . . . . . . . . 8.75 208 49.1 424 CRMSALL BURIED . . . . . . . . 8.82 112 51.6 217 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.592 1.000 0.500 80 100.0 80 ERRCA SECONDARY STRUCTURE . . 6.338 1.000 0.500 49 100.0 49 ERRCA SURFACE . . . . . . . . 6.560 1.000 0.500 52 100.0 52 ERRCA BURIED . . . . . . . . 6.650 1.000 0.500 28 100.0 28 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.653 1.000 0.500 320 81.4 393 ERRMC SECONDARY STRUCTURE . . 6.351 1.000 0.500 196 80.7 243 ERRMC SURFACE . . . . . . . . 6.600 1.000 0.500 208 81.2 256 ERRMC BURIED . . . . . . . . 6.750 1.000 0.500 112 81.8 137 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 321 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 277 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 219 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 216 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 105 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.653 1.000 0.500 320 49.9 641 ERRALL SECONDARY STRUCTURE . . 6.351 1.000 0.500 196 47.2 415 ERRALL SURFACE . . . . . . . . 6.600 1.000 0.500 208 49.1 424 ERRALL BURIED . . . . . . . . 6.750 1.000 0.500 112 51.6 217 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 4 23 49 64 80 80 DISTCA CA (P) 1.25 5.00 28.75 61.25 80.00 80 DISTCA CA (RMS) 0.92 1.41 2.29 3.22 4.49 DISTCA ALL (N) 3 19 87 202 252 320 641 DISTALL ALL (P) 0.47 2.96 13.57 31.51 39.31 641 DISTALL ALL (RMS) 0.78 1.46 2.27 3.30 4.39 DISTALL END of the results output