####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 234), selected 34 , name T0529TS316_1_3-D1 # Molecule2: number of CA atoms 322 ( 2507), selected 34 , name T0529-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0529TS316_1_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 318 - 334 4.86 12.45 LONGEST_CONTINUOUS_SEGMENT: 17 319 - 335 4.87 12.55 LCS_AVERAGE: 4.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 332 - 338 1.77 23.53 LONGEST_CONTINUOUS_SEGMENT: 7 333 - 339 1.67 22.15 LCS_AVERAGE: 1.80 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 334 - 338 0.61 22.51 LCS_AVERAGE: 1.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 306 I 306 3 3 16 0 3 3 3 3 5 5 7 10 10 14 14 14 15 18 20 21 22 22 24 LCS_GDT L 307 L 307 3 3 16 1 3 3 3 3 5 6 9 10 11 14 14 16 17 18 20 21 22 22 24 LCS_GDT Y 308 Y 308 3 3 16 3 3 3 3 3 5 8 9 10 12 14 15 18 20 20 21 22 22 22 24 LCS_GDT K 309 K 309 3 3 16 3 3 4 7 7 9 10 11 12 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT I 310 I 310 3 6 16 3 4 5 7 7 9 10 11 12 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT C 311 C 311 3 6 16 3 3 4 5 6 6 8 11 12 12 14 15 16 19 20 21 22 22 23 24 LCS_GDT L 312 L 312 4 6 16 3 4 6 6 6 9 10 11 12 12 14 14 14 15 15 18 18 22 22 24 LCS_GDT S 313 S 313 4 6 16 3 3 6 6 6 9 10 10 12 12 14 14 16 17 18 20 21 22 22 24 LCS_GDT G 314 G 314 4 6 16 3 4 6 7 7 9 10 11 12 12 14 14 16 17 18 20 21 22 23 24 LCS_GDT D 315 D 315 4 6 16 3 4 6 7 7 9 10 11 12 12 14 14 16 17 18 20 21 22 22 24 LCS_GDT G 316 G 316 4 6 16 3 3 6 7 7 9 10 11 12 12 14 14 15 16 17 20 21 22 23 24 LCS_GDT W 317 W 317 4 6 16 3 3 6 6 7 9 10 11 12 12 14 14 15 16 19 19 21 22 23 24 LCS_GDT P 318 P 318 4 6 17 3 3 5 7 7 9 10 11 12 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT Y 319 Y 319 4 6 17 3 3 5 7 7 9 10 11 12 12 14 17 18 20 20 21 22 22 22 24 LCS_GDT I 320 I 320 4 5 17 3 3 4 5 5 7 9 11 12 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT A 321 A 321 4 5 17 3 3 4 4 5 6 8 9 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT S 322 S 322 4 5 17 3 3 4 5 5 8 8 9 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT R 323 R 323 4 6 17 3 3 4 5 6 6 7 7 9 10 13 14 18 20 20 21 22 22 23 24 LCS_GDT T 324 T 324 3 6 17 3 3 4 5 6 6 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT S 325 S 325 4 6 17 4 4 4 5 7 8 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT I 326 I 326 4 6 17 4 4 4 5 7 8 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT T 327 T 327 4 6 17 4 4 4 5 7 8 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT G 328 G 328 4 6 17 4 4 4 5 7 8 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT R 329 R 329 3 6 17 3 3 4 5 7 8 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT A 330 A 330 4 6 17 3 3 4 4 6 8 8 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT W 331 W 331 4 6 17 3 3 4 4 7 8 9 10 11 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT E 332 E 332 4 7 17 3 3 4 4 6 8 9 9 9 12 14 16 18 20 20 21 22 22 23 24 LCS_GDT N 333 N 333 4 7 17 3 3 4 5 7 8 9 9 10 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT T 334 T 334 5 7 17 3 5 5 5 7 8 9 9 10 12 14 17 18 20 20 21 22 22 23 24 LCS_GDT V 335 V 335 5 7 17 4 5 5 5 7 8 9 9 9 11 12 14 18 18 20 21 22 22 23 24 LCS_GDT V 336 V 336 5 7 11 4 5 5 5 7 8 9 9 9 11 12 14 16 17 18 20 21 22 22 24 LCS_GDT D 337 D 337 5 7 11 4 5 5 5 7 8 9 9 9 11 12 14 16 17 18 20 21 22 22 24 LCS_GDT L 338 L 338 5 7 11 4 5 5 5 7 8 9 9 9 9 11 13 16 17 18 20 21 22 22 24 LCS_GDT E 339 E 339 3 7 11 3 3 4 5 7 8 9 9 9 9 10 12 14 17 18 19 20 22 22 24 LCS_AVERAGE LCS_A: 2.65 ( 1.21 1.80 4.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 7 9 10 11 12 12 14 17 18 20 20 21 22 22 23 24 GDT PERCENT_AT 1.24 1.55 1.86 2.17 2.17 2.80 3.11 3.42 3.73 3.73 4.35 5.28 5.59 6.21 6.21 6.52 6.83 6.83 7.14 7.45 GDT RMS_LOCAL 0.34 0.61 1.13 1.50 1.50 2.17 2.31 2.85 2.95 2.95 3.74 4.58 4.70 5.02 5.02 5.23 5.51 5.51 6.63 6.36 GDT RMS_ALL_AT 14.99 22.51 19.09 17.40 17.40 17.90 18.10 17.48 17.70 17.70 17.60 12.16 12.36 12.32 12.32 12.18 12.08 12.08 12.13 13.77 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 306 I 306 9.700 3 0.600 0.598 9.939 0.714 0.417 LGA L 307 L 307 10.415 3 0.600 0.600 11.861 0.119 0.060 LGA Y 308 Y 308 8.006 7 0.570 0.577 8.465 13.095 4.762 LGA K 309 K 309 2.607 4 0.595 0.572 4.665 52.619 29.735 LGA I 310 I 310 2.095 3 0.584 0.589 2.560 62.857 40.536 LGA C 311 C 311 4.079 1 0.637 0.571 6.878 48.810 34.762 LGA L 312 L 312 3.625 3 0.115 0.117 5.539 41.667 24.107 LGA S 313 S 313 4.093 1 0.635 0.571 5.280 37.500 29.365 LGA G 314 G 314 1.164 0 0.058 0.058 1.704 81.548 81.548 LGA D 315 D 315 2.274 3 0.553 0.510 2.825 68.810 41.548 LGA G 316 G 316 2.285 0 0.053 0.053 3.904 57.500 57.500 LGA W 317 W 317 2.908 9 0.193 0.255 5.192 65.119 20.476 LGA P 318 P 318 2.521 2 0.636 0.615 4.787 73.333 46.395 LGA Y 319 Y 319 1.587 7 0.659 0.600 2.346 70.833 29.683 LGA I 320 I 320 4.418 3 0.623 0.561 7.940 26.905 15.595 LGA A 321 A 321 9.983 0 0.596 0.594 11.909 1.905 1.524 LGA S 322 S 322 12.793 1 0.257 0.317 14.180 0.000 0.000 LGA R 323 R 323 13.979 6 0.154 0.143 14.744 0.000 0.000 LGA T 324 T 324 13.461 2 0.128 0.125 15.518 0.000 0.000 LGA S 325 S 325 16.636 1 0.627 0.563 18.211 0.000 0.000 LGA I 326 I 326 15.114 3 0.047 0.070 16.650 0.000 0.000 LGA T 327 T 327 19.004 2 0.074 0.089 21.518 0.000 0.000 LGA G 328 G 328 18.279 0 0.140 0.140 18.702 0.000 0.000 LGA R 329 R 329 18.885 6 0.081 0.108 21.241 0.000 0.000 LGA A 330 A 330 15.877 0 0.608 0.602 17.651 0.000 0.000 LGA W 331 W 331 19.327 9 0.591 0.530 21.608 0.000 0.000 LGA E 332 E 332 23.480 4 0.332 0.336 24.391 0.000 0.000 LGA N 333 N 333 20.216 3 0.705 0.648 20.982 0.000 0.000 LGA T 334 T 334 22.531 2 0.120 0.177 23.337 0.000 0.000 LGA V 335 V 335 25.650 2 0.046 0.082 27.211 0.000 0.000 LGA V 336 V 336 28.692 2 0.036 0.047 30.316 0.000 0.000 LGA D 337 D 337 33.718 3 0.088 0.097 35.099 0.000 0.000 LGA L 338 L 338 36.123 3 0.163 0.186 39.650 0.000 0.000 LGA E 339 E 339 42.408 4 0.045 0.057 43.494 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 269 167 62.08 322 SUMMARY(RMSD_GDC): 11.159 11.129 11.350 2.184 1.422 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 322 4.0 11 2.85 3.416 3.002 0.372 LGA_LOCAL RMSD: 2.853 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.477 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 11.159 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.980272 * X + 0.051379 * Y + 0.190857 * Z + 46.281704 Y_new = 0.006281 * X + 0.957038 * Y + -0.289894 * Z + -53.865471 Z_new = -0.197552 * X + 0.285374 * Y + 0.937835 * Z + -28.243807 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.006407 0.198860 0.295388 [DEG: 0.3671 11.3938 16.9245 ] ZXZ: 0.582236 0.354456 -0.605510 [DEG: 33.3597 20.3088 -34.6932 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0529TS316_1_3-D1 REMARK 2: T0529-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0529TS316_1_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 322 4.0 11 2.85 3.002 11.16 REMARK ---------------------------------------------------------- MOLECULE T0529TS316_1_3-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 3 REMARK PFRMAT TS REMARK TARGET T0529 REMARK PARENT N/A ATOM 1 N ILE 306 46.282 -53.865 -28.244 1.00 0.00 N ATOM 2 CA ILE 306 47.711 -53.856 -28.532 1.00 0.00 C ATOM 3 C ILE 306 48.324 -52.494 -28.235 1.00 0.00 C ATOM 4 O ILE 306 47.657 -51.465 -28.346 1.00 0.00 O ATOM 5 CB ILE 306 47.994 -54.228 -29.999 1.00 0.00 C ATOM 6 CEN ILE 306 48.148 -55.051 -30.697 1.00 0.00 C ATOM 7 H ILE 306 45.626 -54.066 -28.972 1.00 0.00 H ATOM 8 N LEU 307 49.599 -52.493 -27.859 1.00 0.00 N ATOM 9 CA LEU 307 50.304 -51.256 -27.546 1.00 0.00 C ATOM 10 C LEU 307 51.198 -50.825 -28.701 1.00 0.00 C ATOM 11 O LEU 307 51.864 -51.650 -29.325 1.00 0.00 O ATOM 12 CB LEU 307 51.131 -51.427 -26.266 1.00 0.00 C ATOM 13 CEN LEU 307 50.926 -50.947 -24.816 1.00 0.00 C ATOM 14 H LEU 307 50.091 -53.372 -27.787 1.00 0.00 H ATOM 15 N TYR 308 51.209 -49.526 -28.980 1.00 0.00 N ATOM 16 CA TYR 308 51.950 -48.993 -30.119 1.00 0.00 C ATOM 17 C TYR 308 53.082 -48.084 -29.662 1.00 0.00 C ATOM 18 O TYR 308 52.849 -47.059 -29.021 1.00 0.00 O ATOM 19 CB TYR 308 51.012 -48.232 -31.058 1.00 0.00 C ATOM 20 CEN TYR 308 50.143 -48.450 -32.564 1.00 0.00 C ATOM 21 H TYR 308 50.692 -48.891 -28.389 1.00 0.00 H ATOM 22 N LYS 309 54.311 -48.465 -29.996 1.00 0.00 N ATOM 23 CA LYS 309 55.488 -47.716 -29.569 1.00 0.00 C ATOM 24 C LYS 309 56.242 -47.148 -30.764 1.00 0.00 C ATOM 25 O LYS 309 56.865 -47.889 -31.526 1.00 0.00 O ATOM 26 CB LYS 309 56.413 -48.604 -28.736 1.00 0.00 C ATOM 27 CEN LYS 309 57.167 -49.153 -26.836 1.00 0.00 C ATOM 28 H LYS 309 54.434 -49.294 -30.558 1.00 0.00 H ATOM 29 N ILE 310 56.183 -45.830 -30.923 1.00 0.00 N ATOM 30 CA ILE 310 56.810 -45.168 -32.060 1.00 0.00 C ATOM 31 C ILE 310 57.998 -44.323 -31.619 1.00 0.00 C ATOM 32 O ILE 310 57.910 -43.568 -30.650 1.00 0.00 O ATOM 33 CB ILE 310 55.809 -44.273 -32.815 1.00 0.00 C ATOM 34 CEN ILE 310 55.042 -44.249 -33.588 1.00 0.00 C ATOM 35 H ILE 310 55.691 -45.274 -30.239 1.00 0.00 H ATOM 36 N CYS 311 59.111 -44.456 -32.333 1.00 0.00 N ATOM 37 CA CYS 311 60.303 -43.667 -32.050 1.00 0.00 C ATOM 38 C CYS 311 60.093 -42.202 -32.413 1.00 0.00 C ATOM 39 O CYS 311 59.677 -41.883 -33.526 1.00 0.00 O ATOM 40 CB CYS 311 61.354 -44.302 -32.960 1.00 0.00 C ATOM 41 CEN CYS 311 62.166 -44.883 -32.724 1.00 0.00 C ATOM 42 H CYS 311 59.131 -45.122 -33.092 1.00 0.00 H ATOM 43 N LEU 312 60.384 -41.316 -31.468 1.00 0.00 N ATOM 44 CA LEU 312 60.164 -39.888 -31.662 1.00 0.00 C ATOM 45 C LEU 312 60.989 -39.358 -32.828 1.00 0.00 C ATOM 46 O LEU 312 60.733 -38.266 -33.335 1.00 0.00 O ATOM 47 CB LEU 312 60.499 -39.120 -30.377 1.00 0.00 C ATOM 48 CEN LEU 312 59.624 -38.473 -29.288 1.00 0.00 C ATOM 49 H LEU 312 60.767 -41.640 -30.591 1.00 0.00 H ATOM 50 N SER 313 61.980 -40.136 -33.248 1.00 0.00 N ATOM 51 CA SER 313 62.833 -39.754 -34.367 1.00 0.00 C ATOM 52 C SER 313 62.315 -40.333 -35.677 1.00 0.00 C ATOM 53 O SER 313 62.841 -40.035 -36.750 1.00 0.00 O ATOM 54 CB SER 313 64.258 -40.210 -34.115 1.00 0.00 C ATOM 55 CEN SER 313 64.668 -40.521 -33.942 1.00 0.00 C ATOM 56 H SER 313 62.146 -41.016 -32.780 1.00 0.00 H ATOM 57 N GLY 314 61.280 -41.160 -35.584 1.00 0.00 N ATOM 58 CA GLY 314 60.672 -41.762 -36.765 1.00 0.00 C ATOM 59 C GLY 314 61.544 -42.879 -37.325 1.00 0.00 C ATOM 60 O GLY 314 61.282 -43.401 -38.409 1.00 0.00 O ATOM 61 CEN GLY 314 60.672 -41.763 -36.766 1.00 0.00 C ATOM 62 H GLY 314 60.905 -41.379 -34.673 1.00 0.00 H ATOM 63 N ASP 315 62.582 -43.243 -36.580 1.00 0.00 N ATOM 64 CA ASP 315 63.501 -44.291 -37.005 1.00 0.00 C ATOM 65 C ASP 315 62.773 -45.612 -37.211 1.00 0.00 C ATOM 66 O ASP 315 63.181 -46.437 -38.029 1.00 0.00 O ATOM 67 CB ASP 315 64.628 -44.465 -35.983 1.00 0.00 C ATOM 68 CEN ASP 315 65.592 -44.180 -35.823 1.00 0.00 C ATOM 69 H ASP 315 62.738 -42.780 -35.695 1.00 0.00 H ATOM 70 N GLY 316 61.691 -45.809 -36.464 1.00 0.00 N ATOM 71 CA GLY 316 60.905 -47.032 -36.562 1.00 0.00 C ATOM 72 C GLY 316 59.854 -47.102 -35.461 1.00 0.00 C ATOM 73 O GLY 316 59.819 -46.253 -34.570 1.00 0.00 O ATOM 74 CEN GLY 316 60.905 -47.032 -36.562 1.00 0.00 C ATOM 75 H GLY 316 61.407 -45.092 -35.813 1.00 0.00 H ATOM 76 N TRP 317 59.001 -48.116 -35.527 1.00 0.00 N ATOM 77 CA TRP 317 57.948 -48.299 -34.535 1.00 0.00 C ATOM 78 C TRP 317 57.801 -49.766 -34.151 1.00 0.00 C ATOM 79 O TRP 317 58.193 -50.657 -34.905 1.00 0.00 O ATOM 80 CB TRP 317 56.618 -47.759 -35.063 1.00 0.00 C ATOM 81 CEN TRP 317 55.393 -46.543 -34.750 1.00 0.00 C ATOM 82 H TRP 317 59.083 -48.780 -36.286 1.00 0.00 H ATOM 83 N PRO 318 57.234 -50.010 -32.976 1.00 0.00 N ATOM 84 CA PRO 318 56.991 -51.371 -32.510 1.00 0.00 C ATOM 85 C PRO 318 55.768 -51.433 -31.603 1.00 0.00 C ATOM 86 O PRO 318 55.448 -50.468 -30.910 1.00 0.00 O ATOM 87 CB PRO 318 58.282 -51.750 -31.766 1.00 0.00 C ATOM 88 CEN PRO 318 58.776 -50.081 -32.166 1.00 0.00 C ATOM 89 N TYR 319 55.088 -52.574 -31.614 1.00 0.00 N ATOM 90 CA TYR 319 53.898 -52.764 -30.793 1.00 0.00 C ATOM 91 C TYR 319 54.094 -53.899 -29.795 1.00 0.00 C ATOM 92 O TYR 319 54.545 -54.986 -30.155 1.00 0.00 O ATOM 93 CB TYR 319 52.678 -53.044 -31.673 1.00 0.00 C ATOM 94 CEN TYR 319 51.282 -52.224 -32.342 1.00 0.00 C ATOM 95 H TYR 319 55.403 -53.330 -32.206 1.00 0.00 H ATOM 96 N ILE 320 53.751 -53.640 -28.537 1.00 0.00 N ATOM 97 CA ILE 320 53.784 -54.670 -27.506 1.00 0.00 C ATOM 98 C ILE 320 52.580 -55.596 -27.614 1.00 0.00 C ATOM 99 O ILE 320 51.438 -55.168 -27.446 1.00 0.00 O ATOM 100 CB ILE 320 53.822 -54.055 -26.094 1.00 0.00 C ATOM 101 CEN ILE 320 54.469 -53.654 -25.313 1.00 0.00 C ATOM 102 H ILE 320 53.459 -52.704 -28.289 1.00 0.00 H ATOM 103 N ALA 321 52.842 -56.868 -27.896 1.00 0.00 N ATOM 104 CA ALA 321 51.784 -57.868 -27.982 1.00 0.00 C ATOM 105 C ALA 321 51.513 -58.502 -26.624 1.00 0.00 C ATOM 106 O ALA 321 50.361 -58.715 -26.246 1.00 0.00 O ATOM 107 CB ALA 321 52.145 -58.934 -29.006 1.00 0.00 C ATOM 108 CEN ALA 321 52.144 -58.933 -29.004 1.00 0.00 C ATOM 109 H ALA 321 53.799 -57.150 -28.054 1.00 0.00 H ATOM 110 N SER 322 52.582 -58.800 -25.892 1.00 0.00 N ATOM 111 CA SER 322 52.462 -59.432 -24.583 1.00 0.00 C ATOM 112 C SER 322 53.672 -59.124 -23.711 1.00 0.00 C ATOM 113 O SER 322 54.559 -58.367 -24.106 1.00 0.00 O ATOM 114 CB SER 322 52.291 -60.931 -24.740 1.00 0.00 C ATOM 115 CEN SER 322 52.351 -61.429 -24.947 1.00 0.00 C ATOM 116 H SER 322 53.500 -58.585 -26.252 1.00 0.00 H ATOM 117 N ARG 323 53.703 -59.716 -22.522 1.00 0.00 N ATOM 118 CA ARG 323 54.772 -59.456 -21.565 1.00 0.00 C ATOM 119 C ARG 323 56.111 -59.970 -22.080 1.00 0.00 C ATOM 120 O ARG 323 57.169 -59.501 -21.661 1.00 0.00 O ATOM 121 CB ARG 323 54.456 -60.015 -20.184 1.00 0.00 C ATOM 122 CEN ARG 323 53.689 -60.140 -17.829 1.00 0.00 C ATOM 123 H ARG 323 52.968 -60.362 -22.274 1.00 0.00 H ATOM 124 N THR 324 56.056 -60.934 -22.992 1.00 0.00 N ATOM 125 CA THR 324 57.264 -61.567 -23.510 1.00 0.00 C ATOM 126 C THR 324 57.249 -61.618 -25.032 1.00 0.00 C ATOM 127 O THR 324 58.029 -62.347 -25.646 1.00 0.00 O ATOM 128 CB THR 324 57.433 -62.996 -22.961 1.00 0.00 C ATOM 129 CEN THR 324 57.494 -63.373 -22.519 1.00 0.00 C ATOM 130 H THR 324 55.156 -61.237 -23.335 1.00 0.00 H ATOM 131 N SER 325 56.359 -60.838 -25.636 1.00 0.00 N ATOM 132 CA SER 325 56.255 -60.778 -27.089 1.00 0.00 C ATOM 133 C SER 325 56.174 -59.337 -27.578 1.00 0.00 C ATOM 134 O SER 325 55.369 -58.548 -27.082 1.00 0.00 O ATOM 135 CB SER 325 55.045 -61.563 -27.558 1.00 0.00 C ATOM 136 CEN SER 325 54.543 -61.772 -27.556 1.00 0.00 C ATOM 137 H SER 325 55.740 -60.272 -25.075 1.00 0.00 H ATOM 138 N ILE 326 57.013 -59.000 -28.551 1.00 0.00 N ATOM 139 CA ILE 326 56.939 -57.701 -29.210 1.00 0.00 C ATOM 140 C ILE 326 57.055 -57.843 -30.722 1.00 0.00 C ATOM 141 O ILE 326 57.748 -58.728 -31.221 1.00 0.00 O ATOM 142 CB ILE 326 58.041 -56.749 -28.707 1.00 0.00 C ATOM 143 CEN ILE 326 58.313 -56.026 -27.938 1.00 0.00 C ATOM 144 H ILE 326 57.719 -59.660 -28.843 1.00 0.00 H ATOM 145 N THR 327 56.369 -56.965 -31.447 1.00 0.00 N ATOM 146 CA THR 327 56.564 -56.843 -32.887 1.00 0.00 C ATOM 147 C THR 327 57.275 -55.541 -33.237 1.00 0.00 C ATOM 148 O THR 327 56.973 -54.487 -32.678 1.00 0.00 O ATOM 149 CB THR 327 55.226 -56.905 -33.646 1.00 0.00 C ATOM 150 CEN THR 327 54.732 -57.179 -33.794 1.00 0.00 C ATOM 151 H THR 327 55.697 -56.367 -30.989 1.00 0.00 H ATOM 152 N GLY 328 58.221 -55.622 -34.167 1.00 0.00 N ATOM 153 CA GLY 328 58.850 -54.431 -34.725 1.00 0.00 C ATOM 154 C GLY 328 58.497 -54.260 -36.197 1.00 0.00 C ATOM 155 O GLY 328 58.582 -55.207 -36.979 1.00 0.00 O ATOM 156 CEN GLY 328 58.851 -54.431 -34.726 1.00 0.00 C ATOM 157 H GLY 328 58.512 -56.531 -34.495 1.00 0.00 H ATOM 158 N ARG 329 58.101 -53.048 -36.569 1.00 0.00 N ATOM 159 CA ARG 329 57.999 -52.671 -37.974 1.00 0.00 C ATOM 160 C ARG 329 58.321 -51.196 -38.173 1.00 0.00 C ATOM 161 O ARG 329 57.888 -50.346 -37.395 1.00 0.00 O ATOM 162 CB ARG 329 56.646 -53.033 -38.568 1.00 0.00 C ATOM 163 CEN ARG 329 54.880 -54.288 -39.775 1.00 0.00 C ATOM 164 H ARG 329 57.863 -52.369 -35.859 1.00 0.00 H ATOM 165 N ALA 330 59.081 -50.898 -39.221 1.00 0.00 N ATOM 166 CA ALA 330 59.382 -49.517 -39.581 1.00 0.00 C ATOM 167 C ALA 330 58.469 -49.028 -40.699 1.00 0.00 C ATOM 168 O ALA 330 57.692 -49.800 -41.260 1.00 0.00 O ATOM 169 CB ALA 330 60.842 -49.382 -39.987 1.00 0.00 C ATOM 170 CEN ALA 330 60.841 -49.381 -39.988 1.00 0.00 C ATOM 171 H ALA 330 59.460 -51.646 -39.783 1.00 0.00 H ATOM 172 N TRP 331 58.569 -47.742 -41.017 1.00 0.00 N ATOM 173 CA TRP 331 57.733 -47.141 -42.049 1.00 0.00 C ATOM 174 C TRP 331 58.058 -47.711 -43.423 1.00 0.00 C ATOM 175 O TRP 331 59.187 -47.599 -43.902 1.00 0.00 O ATOM 176 CB TRP 331 57.907 -45.621 -42.058 1.00 0.00 C ATOM 177 CEN TRP 331 57.028 -44.125 -41.809 1.00 0.00 C ATOM 178 H TRP 331 59.243 -47.166 -40.532 1.00 0.00 H ATOM 179 N GLU 332 57.062 -48.326 -44.053 1.00 0.00 N ATOM 180 CA GLU 332 57.221 -48.856 -45.403 1.00 0.00 C ATOM 181 C GLU 332 58.237 -49.989 -45.435 1.00 0.00 C ATOM 182 O GLU 332 58.839 -50.269 -46.471 1.00 0.00 O ATOM 183 CB GLU 332 57.643 -47.745 -46.368 1.00 0.00 C ATOM 184 CEN GLU 332 57.245 -46.594 -47.560 1.00 0.00 C ATOM 185 H GLU 332 56.174 -48.429 -43.586 1.00 0.00 H ATOM 186 N ASN 333 58.424 -50.641 -44.291 1.00 0.00 N ATOM 187 CA ASN 333 59.352 -51.762 -44.191 1.00 0.00 C ATOM 188 C ASN 333 58.639 -53.028 -43.736 1.00 0.00 C ATOM 189 O ASN 333 57.560 -52.968 -43.146 1.00 0.00 O ATOM 190 CB ASN 333 60.505 -51.444 -43.258 1.00 0.00 C ATOM 191 CEN ASN 333 61.477 -51.054 -43.320 1.00 0.00 C ATOM 192 H ASN 333 57.909 -50.353 -43.471 1.00 0.00 H ATOM 193 N THR 334 59.250 -54.177 -44.011 1.00 0.00 N ATOM 194 CA THR 334 58.682 -55.459 -43.616 1.00 0.00 C ATOM 195 C THR 334 58.679 -55.617 -42.101 1.00 0.00 C ATOM 196 O THR 334 59.526 -55.055 -41.407 1.00 0.00 O ATOM 197 CB THR 334 59.453 -56.636 -44.242 1.00 0.00 C ATOM 198 CEN THR 334 59.653 -56.932 -44.705 1.00 0.00 C ATOM 199 H THR 334 60.129 -54.159 -44.508 1.00 0.00 H ATOM 200 N VAL 335 57.721 -56.385 -41.593 1.00 0.00 N ATOM 201 CA VAL 335 57.618 -56.634 -40.160 1.00 0.00 C ATOM 202 C VAL 335 58.656 -57.650 -39.702 1.00 0.00 C ATOM 203 O VAL 335 58.978 -58.593 -40.424 1.00 0.00 O ATOM 204 CB VAL 335 56.215 -57.139 -39.773 1.00 0.00 C ATOM 205 CEN VAL 335 55.632 -56.964 -39.451 1.00 0.00 C ATOM 206 H VAL 335 57.046 -56.807 -42.216 1.00 0.00 H ATOM 207 N VAL 336 59.179 -57.450 -38.496 1.00 0.00 N ATOM 208 CA VAL 336 60.187 -58.347 -37.941 1.00 0.00 C ATOM 209 C VAL 336 59.713 -58.962 -36.630 1.00 0.00 C ATOM 210 O VAL 336 59.088 -58.292 -35.808 1.00 0.00 O ATOM 211 CB VAL 336 61.522 -57.618 -37.701 1.00 0.00 C ATOM 212 CEN VAL 336 62.171 -57.562 -37.926 1.00 0.00 C ATOM 213 H VAL 336 58.872 -56.658 -37.952 1.00 0.00 H ATOM 214 N ASP 337 60.013 -60.243 -36.441 1.00 0.00 N ATOM 215 CA ASP 337 59.647 -60.943 -35.216 1.00 0.00 C ATOM 216 C ASP 337 60.724 -60.789 -34.149 1.00 0.00 C ATOM 217 O ASP 337 61.860 -61.227 -34.335 1.00 0.00 O ATOM 218 CB ASP 337 59.396 -62.425 -35.499 1.00 0.00 C ATOM 219 CEN ASP 337 58.628 -63.072 -35.674 1.00 0.00 C ATOM 220 H ASP 337 60.508 -60.744 -37.165 1.00 0.00 H ATOM 221 N LEU 338 60.363 -60.165 -33.034 1.00 0.00 N ATOM 222 CA LEU 338 61.316 -59.886 -31.968 1.00 0.00 C ATOM 223 C LEU 338 61.659 -61.151 -31.191 1.00 0.00 C ATOM 224 O LEU 338 60.771 -61.892 -30.771 1.00 0.00 O ATOM 225 CB LEU 338 60.757 -58.813 -31.024 1.00 0.00 C ATOM 226 CEN LEU 338 61.067 -57.315 -30.843 1.00 0.00 C ATOM 227 H LEU 338 59.401 -59.875 -32.923 1.00 0.00 H ATOM 228 N GLU 339 62.952 -61.391 -31.003 1.00 0.00 N ATOM 229 CA GLU 339 63.415 -62.561 -30.266 1.00 0.00 C ATOM 230 C GLU 339 63.072 -62.451 -28.786 1.00 0.00 C ATOM 231 O GLU 339 63.264 -61.403 -28.170 1.00 0.00 O ATOM 232 CB GLU 339 64.923 -62.745 -30.445 1.00 0.00 C ATOM 233 CEN GLU 339 66.236 -63.510 -31.214 1.00 0.00 C ATOM 234 H GLU 339 63.633 -60.746 -31.379 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 167 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 82.60 29.5 44 6.9 639 ARMSMC SECONDARY STRUCTURE . . 100.24 7.7 13 3.9 336 ARMSMC SURFACE . . . . . . . . 40.00 50.0 6 1.8 326 ARMSMC BURIED . . . . . . . . 87.44 26.3 38 12.1 313 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 259 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 240 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 138 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 135 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 124 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 170 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 116 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 95 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 58 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 34 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.16 (Number of atoms: 34) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.16 34 10.6 322 CRMSCA CRN = ALL/NP . . . . . 0.3282 CRMSCA SECONDARY STRUCTURE . . 9.95 10 6.0 168 CRMSCA SURFACE . . . . . . . . 14.37 9 5.5 164 CRMSCA BURIED . . . . . . . . 9.75 25 15.8 158 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.35 167 10.5 1589 CRMSMC SECONDARY STRUCTURE . . 10.18 50 6.0 834 CRMSMC SURFACE . . . . . . . . 14.74 45 5.6 807 CRMSMC BURIED . . . . . . . . 9.81 122 15.6 782 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.22 31 2.5 1219 CRMSSC RELIABLE SIDE CHAINS . 12.22 31 3.1 1005 CRMSSC SECONDARY STRUCTURE . . 10.76 10 1.6 638 CRMSSC SURFACE . . . . . . . . 15.20 9 1.4 630 CRMSSC BURIED . . . . . . . . 10.76 22 3.7 589 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.35 167 6.7 2507 CRMSALL SECONDARY STRUCTURE . . 10.18 50 3.8 1310 CRMSALL SURFACE . . . . . . . . 14.74 45 3.5 1286 CRMSALL BURIED . . . . . . . . 9.81 122 10.0 1221 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.220 1.000 0.500 34 10.6 322 ERRCA SECONDARY STRUCTURE . . 8.960 1.000 0.500 10 6.0 168 ERRCA SURFACE . . . . . . . . 13.113 1.000 0.500 9 5.5 164 ERRCA BURIED . . . . . . . . 9.179 1.000 0.500 25 15.8 158 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.340 1.000 0.500 167 10.5 1589 ERRMC SECONDARY STRUCTURE . . 9.199 1.000 0.500 50 6.0 834 ERRMC SURFACE . . . . . . . . 13.380 1.000 0.500 45 5.6 807 ERRMC BURIED . . . . . . . . 9.218 1.000 0.500 122 15.6 782 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.199 1.000 0.500 31 2.5 1219 ERRSC RELIABLE SIDE CHAINS . 11.199 1.000 0.500 31 3.1 1005 ERRSC SECONDARY STRUCTURE . . 9.653 1.000 0.500 10 1.6 638 ERRSC SURFACE . . . . . . . . 14.007 1.000 0.500 9 1.4 630 ERRSC BURIED . . . . . . . . 10.050 1.000 0.500 22 3.7 589 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.340 1.000 0.500 167 6.7 2507 ERRALL SECONDARY STRUCTURE . . 9.199 1.000 0.500 50 3.8 1310 ERRALL SURFACE . . . . . . . . 13.380 1.000 0.500 45 3.5 1286 ERRALL BURIED . . . . . . . . 9.218 1.000 0.500 122 10.0 1221 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 2 20 34 322 DISTCA CA (P) 0.00 0.00 0.31 0.62 6.21 322 DISTCA CA (RMS) 0.00 0.00 2.63 2.98 7.51 DISTCA ALL (N) 0 2 4 13 95 167 2507 DISTALL ALL (P) 0.00 0.08 0.16 0.52 3.79 2507 DISTALL ALL (RMS) 0.00 1.78 2.16 3.79 7.47 DISTALL END of the results output