####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 34 ( 234), selected 34 , name T0529TS042_1_3-D1 # Molecule2: number of CA atoms 322 ( 2507), selected 34 , name T0529-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0529TS042_1_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 325 - 339 4.87 15.34 LCS_AVERAGE: 4.48 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 320 - 328 1.96 16.31 LCS_AVERAGE: 2.03 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 333 - 338 0.85 16.61 LONGEST_CONTINUOUS_SEGMENT: 6 334 - 339 0.72 16.12 LCS_AVERAGE: 1.28 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 34 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 306 I 306 3 4 14 3 3 4 5 5 5 5 5 6 9 12 15 15 17 17 18 19 21 22 23 LCS_GDT L 307 L 307 3 4 14 3 5 5 7 7 7 8 8 10 11 13 15 15 17 17 18 19 21 22 23 LCS_GDT Y 308 Y 308 3 4 14 3 3 4 5 5 5 5 5 8 11 12 13 14 17 18 19 21 21 23 25 LCS_GDT K 309 K 309 3 4 14 1 3 4 5 5 6 8 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT I 310 I 310 3 3 14 1 3 3 4 5 6 7 8 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT C 311 C 311 3 6 14 0 3 3 4 5 6 7 8 10 11 12 13 14 15 18 19 21 21 23 25 LCS_GDT L 312 L 312 4 6 14 3 4 4 5 5 6 7 8 9 11 12 12 14 14 15 16 17 20 21 25 LCS_GDT S 313 S 313 4 6 14 3 4 4 5 5 7 7 8 10 11 12 13 14 14 16 17 18 20 23 25 LCS_GDT G 314 G 314 4 6 14 3 4 4 5 6 7 7 8 10 11 12 13 14 14 16 17 18 20 23 25 LCS_GDT D 315 D 315 4 6 14 3 4 4 5 6 7 7 8 10 11 12 13 14 14 16 17 18 20 21 22 LCS_GDT G 316 G 316 4 6 14 3 4 4 5 6 7 7 8 10 11 12 13 14 14 16 17 18 20 20 22 LCS_GDT W 317 W 317 4 6 14 3 4 4 4 6 7 7 8 10 11 12 13 14 14 16 19 20 21 23 25 LCS_GDT P 318 P 318 4 6 14 3 4 4 4 6 7 7 8 10 11 12 13 14 15 18 19 21 21 23 25 LCS_GDT Y 319 Y 319 4 6 14 3 4 4 4 6 7 7 8 10 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT I 320 I 320 4 9 14 3 3 5 6 9 9 10 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT A 321 A 321 4 9 14 3 3 6 7 9 9 10 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT S 322 S 322 4 9 14 3 3 6 7 9 9 10 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT R 323 R 323 4 9 14 3 3 6 7 9 9 10 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT T 324 T 324 3 9 14 3 3 5 6 8 9 10 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT S 325 S 325 4 9 15 3 4 6 7 9 9 10 11 11 12 13 14 14 16 18 19 21 21 23 25 LCS_GDT I 326 I 326 4 9 15 3 4 5 6 9 9 10 11 11 12 13 15 15 17 18 19 21 21 23 25 LCS_GDT T 327 T 327 4 9 15 3 4 6 7 9 9 10 11 11 12 13 15 15 17 18 19 21 21 23 25 LCS_GDT G 328 G 328 4 9 15 3 4 6 7 9 9 10 11 11 12 13 14 14 17 18 19 21 21 23 25 LCS_GDT R 329 R 329 4 6 15 3 4 5 7 9 9 10 11 11 12 13 15 15 17 18 19 21 21 23 25 LCS_GDT A 330 A 330 3 5 15 0 3 3 4 5 6 10 11 11 12 13 15 15 17 18 19 21 21 23 25 LCS_GDT W 331 W 331 3 4 15 3 3 3 3 4 4 6 6 7 10 13 15 15 17 18 19 21 21 23 25 LCS_GDT E 332 E 332 3 4 15 3 3 3 4 4 5 7 8 10 11 13 15 15 17 18 19 21 21 23 25 LCS_GDT N 333 N 333 6 7 15 3 4 7 7 7 7 9 9 10 11 13 15 15 17 18 19 21 21 23 25 LCS_GDT T 334 T 334 6 7 15 3 5 7 7 7 7 9 9 10 11 13 15 15 17 17 18 21 21 22 25 LCS_GDT V 335 V 335 6 7 15 4 5 7 7 7 7 9 9 10 11 13 15 15 17 17 18 19 21 22 23 LCS_GDT V 336 V 336 6 7 15 4 5 7 7 7 7 9 9 10 11 13 15 15 17 17 18 19 21 22 23 LCS_GDT D 337 D 337 6 7 15 4 5 7 7 7 7 9 9 10 11 13 15 15 17 17 18 19 21 22 23 LCS_GDT L 338 L 338 6 7 15 4 5 7 7 7 7 9 9 10 11 13 15 15 17 17 18 19 21 22 23 LCS_GDT E 339 E 339 6 7 15 0 5 7 7 7 7 9 9 10 11 13 15 15 17 17 18 19 21 22 23 LCS_AVERAGE LCS_A: 2.60 ( 1.28 2.03 4.48 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 7 7 9 9 10 11 11 12 13 15 15 17 18 19 21 21 23 25 GDT PERCENT_AT 1.24 1.55 2.17 2.17 2.80 2.80 3.11 3.42 3.42 3.73 4.04 4.66 4.66 5.28 5.59 5.90 6.52 6.52 7.14 7.76 GDT RMS_LOCAL 0.12 0.49 1.02 1.02 1.71 1.71 2.07 2.49 2.49 3.03 3.31 4.40 4.40 9.05 5.62 5.81 6.29 6.14 6.98 7.45 GDT RMS_ALL_AT 16.46 16.33 16.42 16.42 16.20 16.20 16.12 16.33 16.33 15.27 15.45 15.89 15.89 16.04 13.43 13.29 12.90 14.31 12.88 12.55 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 306 I 306 13.137 3 0.604 0.594 15.544 0.000 0.000 LGA L 307 L 307 16.488 3 0.164 0.160 18.708 0.000 0.000 LGA Y 308 Y 308 12.535 7 0.561 0.573 13.341 0.119 0.040 LGA K 309 K 309 7.008 4 0.605 0.591 9.253 4.762 5.026 LGA I 310 I 310 10.754 3 0.585 0.585 12.586 0.357 0.179 LGA C 311 C 311 13.326 1 0.674 0.641 17.059 0.000 0.000 LGA L 312 L 312 16.488 3 0.626 0.593 17.523 0.000 0.000 LGA S 313 S 313 17.237 1 0.136 0.220 17.442 0.000 0.000 LGA G 314 G 314 17.919 0 0.199 0.199 19.325 0.000 0.000 LGA D 315 D 315 19.930 3 0.407 0.378 21.705 0.000 0.000 LGA G 316 G 316 17.883 0 0.663 0.663 17.952 0.000 0.000 LGA W 317 W 317 12.586 9 0.070 0.084 14.407 0.000 0.000 LGA P 318 P 318 11.462 2 0.635 0.616 12.561 0.000 0.000 LGA Y 319 Y 319 6.959 7 0.666 0.613 7.683 19.524 7.937 LGA I 320 I 320 2.570 3 0.675 0.609 4.544 54.524 34.405 LGA A 321 A 321 1.659 0 0.100 0.177 2.464 68.810 68.000 LGA S 322 S 322 1.423 1 0.105 0.106 1.880 81.429 66.429 LGA R 323 R 323 1.189 6 0.551 0.516 3.867 72.024 32.078 LGA T 324 T 324 3.941 2 0.086 0.091 6.222 52.143 32.245 LGA S 325 S 325 1.954 1 0.667 0.602 3.744 63.452 50.635 LGA I 326 I 326 2.907 3 0.098 0.110 4.420 60.952 35.119 LGA T 327 T 327 1.896 2 0.239 0.289 2.412 66.786 48.571 LGA G 328 G 328 2.055 0 0.202 0.202 2.055 70.833 70.833 LGA R 329 R 329 0.828 6 0.672 0.623 2.268 81.786 35.628 LGA A 330 A 330 4.384 0 0.630 0.606 7.374 28.571 25.524 LGA W 331 W 331 10.351 9 0.659 0.600 11.919 1.786 0.510 LGA E 332 E 332 12.447 4 0.606 0.588 14.006 0.000 0.000 LGA N 333 N 333 12.267 3 0.707 0.653 13.221 0.000 0.000 LGA T 334 T 334 16.400 2 0.064 0.081 19.705 0.000 0.000 LGA V 335 V 335 21.639 2 0.105 0.157 23.368 0.000 0.000 LGA V 336 V 336 27.425 2 0.124 0.139 30.656 0.000 0.000 LGA D 337 D 337 31.492 3 0.094 0.105 33.818 0.000 0.000 LGA L 338 L 338 37.961 3 0.548 0.495 41.396 0.000 0.000 LGA E 339 E 339 42.096 4 0.670 0.603 42.974 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 34 136 136 100.00 269 167 62.08 322 SUMMARY(RMSD_GDC): 11.124 11.066 11.157 2.260 1.594 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 34 322 4.0 11 2.49 3.261 2.990 0.424 LGA_LOCAL RMSD: 2.492 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.328 Number of assigned atoms: 34 Std_ASGN_ATOMS RMSD: 11.124 Standard rmsd on all 34 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.971465 * X + -0.061225 * Y + -0.229146 * Z + 58.965588 Y_new = -0.060744 * X + -0.998111 * Y + 0.009157 * Z + -49.906330 Z_new = -0.229274 * X + 0.005024 * Y + -0.973349 * Z + -22.561453 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.062447 0.231332 3.136431 [DEG: -3.5780 13.2543 179.7043 ] ZXZ: -1.610734 2.910204 -1.548887 [DEG: -92.2883 166.7424 -88.7447 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0529TS042_1_3-D1 REMARK 2: T0529-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0529TS042_1_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 34 322 4.0 11 2.49 2.990 11.12 REMARK ---------------------------------------------------------- MOLECULE T0529TS042_1_3-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 3 REMARK PFRMAT TS REMARK TARGET T0529 REMARK PARENT N/A ATOM 1 N ILE 306 58.966 -49.906 -22.561 1.00 0.00 N ATOM 2 CA ILE 306 60.382 -49.995 -22.896 1.00 0.00 C ATOM 3 C ILE 306 60.830 -51.446 -23.015 1.00 0.00 C ATOM 4 O ILE 306 60.451 -52.291 -22.204 1.00 0.00 O ATOM 5 CB ILE 306 61.256 -49.282 -21.847 1.00 0.00 C ATOM 6 CEN ILE 306 61.680 -48.325 -21.541 1.00 0.00 C ATOM 7 H ILE 306 58.678 -49.451 -21.719 1.00 0.00 H ATOM 8 N LEU 307 61.639 -51.729 -24.030 1.00 0.00 N ATOM 9 CA LEU 307 62.128 -53.082 -24.267 1.00 0.00 C ATOM 10 C LEU 307 61.254 -53.814 -25.276 1.00 0.00 C ATOM 11 O LEU 307 61.641 -54.857 -25.804 1.00 0.00 O ATOM 12 CB LEU 307 62.189 -53.861 -22.948 1.00 0.00 C ATOM 13 CEN LEU 307 63.355 -54.269 -22.026 1.00 0.00 C ATOM 14 H LEU 307 61.922 -50.987 -24.655 1.00 0.00 H ATOM 15 N TYR 308 60.074 -53.263 -25.539 1.00 0.00 N ATOM 16 CA TYR 308 59.149 -53.856 -26.499 1.00 0.00 C ATOM 17 C TYR 308 58.050 -52.874 -26.882 1.00 0.00 C ATOM 18 O TYR 308 57.597 -52.080 -26.056 1.00 0.00 O ATOM 19 CB TYR 308 58.534 -55.137 -25.928 1.00 0.00 C ATOM 20 CEN TYR 308 58.713 -56.876 -26.024 1.00 0.00 C ATOM 21 H TYR 308 59.811 -52.413 -25.063 1.00 0.00 H ATOM 22 N LYS 309 57.623 -52.932 -28.138 1.00 0.00 N ATOM 23 CA LYS 309 56.540 -52.083 -28.620 1.00 0.00 C ATOM 24 C LYS 309 55.571 -52.869 -29.495 1.00 0.00 C ATOM 25 O LYS 309 55.979 -53.527 -30.452 1.00 0.00 O ATOM 26 CB LYS 309 57.099 -50.889 -29.395 1.00 0.00 C ATOM 27 CEN LYS 309 57.559 -48.825 -29.455 1.00 0.00 C ATOM 28 H LYS 309 58.060 -53.581 -28.777 1.00 0.00 H ATOM 29 N ILE 310 54.287 -52.796 -29.162 1.00 0.00 N ATOM 30 CA ILE 310 53.278 -53.622 -29.813 1.00 0.00 C ATOM 31 C ILE 310 52.299 -52.768 -30.610 1.00 0.00 C ATOM 32 O ILE 310 51.675 -51.854 -30.070 1.00 0.00 O ATOM 33 CB ILE 310 52.495 -54.467 -28.793 1.00 0.00 C ATOM 34 CEN ILE 310 52.484 -55.400 -28.228 1.00 0.00 C ATOM 35 H ILE 310 54.003 -52.150 -28.438 1.00 0.00 H ATOM 36 N CYS 311 52.168 -53.072 -31.897 1.00 0.00 N ATOM 37 CA CYS 311 51.434 -52.212 -32.816 1.00 0.00 C ATOM 38 C CYS 311 50.479 -53.021 -33.685 1.00 0.00 C ATOM 39 O CYS 311 50.446 -54.249 -33.608 1.00 0.00 O ATOM 40 CB CYS 311 52.547 -51.600 -33.667 1.00 0.00 C ATOM 41 CEN CYS 311 52.911 -50.641 -33.685 1.00 0.00 C ATOM 42 H CYS 311 52.588 -53.922 -32.246 1.00 0.00 H ATOM 43 N LEU 312 49.703 -52.325 -34.509 1.00 0.00 N ATOM 44 CA LEU 312 48.705 -52.973 -35.351 1.00 0.00 C ATOM 45 C LEU 312 48.786 -52.471 -36.786 1.00 0.00 C ATOM 46 O LEU 312 48.822 -51.266 -37.032 1.00 0.00 O ATOM 47 CB LEU 312 47.300 -52.740 -34.782 1.00 0.00 C ATOM 48 CEN LEU 312 46.323 -53.643 -34.004 1.00 0.00 C ATOM 49 H LEU 312 49.808 -51.322 -34.553 1.00 0.00 H ATOM 50 N SER 313 48.815 -53.403 -37.734 1.00 0.00 N ATOM 51 CA SER 313 48.948 -53.058 -39.144 1.00 0.00 C ATOM 52 C SER 313 47.619 -52.595 -39.726 1.00 0.00 C ATOM 53 O SER 313 46.572 -52.734 -39.095 1.00 0.00 O ATOM 54 CB SER 313 49.482 -54.245 -39.923 1.00 0.00 C ATOM 55 CEN SER 313 49.561 -54.764 -40.067 1.00 0.00 C ATOM 56 H SER 313 48.743 -54.375 -37.469 1.00 0.00 H ATOM 57 N GLY 314 47.669 -52.044 -40.934 1.00 0.00 N ATOM 58 CA GLY 314 46.463 -51.599 -41.623 1.00 0.00 C ATOM 59 C GLY 314 45.538 -52.771 -41.925 1.00 0.00 C ATOM 60 O GLY 314 44.331 -52.594 -42.089 1.00 0.00 O ATOM 61 CEN GLY 314 46.463 -51.599 -41.623 1.00 0.00 C ATOM 62 H GLY 314 48.565 -51.930 -41.386 1.00 0.00 H ATOM 63 N ASP 315 46.111 -53.967 -41.998 1.00 0.00 N ATOM 64 CA ASP 315 45.334 -55.175 -42.252 1.00 0.00 C ATOM 65 C ASP 315 44.904 -55.838 -40.950 1.00 0.00 C ATOM 66 O ASP 315 44.394 -56.958 -40.951 1.00 0.00 O ATOM 67 CB ASP 315 46.138 -56.160 -43.104 1.00 0.00 C ATOM 68 CEN ASP 315 46.244 -56.454 -44.074 1.00 0.00 C ATOM 69 H ASP 315 47.110 -54.042 -41.873 1.00 0.00 H ATOM 70 N GLY 316 45.113 -55.139 -39.839 1.00 0.00 N ATOM 71 CA GLY 316 44.643 -55.606 -38.541 1.00 0.00 C ATOM 72 C GLY 316 45.575 -56.667 -37.966 1.00 0.00 C ATOM 73 O GLY 316 45.191 -57.429 -37.080 1.00 0.00 O ATOM 74 CEN GLY 316 44.643 -55.606 -38.540 1.00 0.00 C ATOM 75 H GLY 316 45.611 -54.262 -39.896 1.00 0.00 H ATOM 76 N TRP 317 46.800 -56.710 -38.478 1.00 0.00 N ATOM 77 CA TRP 317 47.770 -57.714 -38.058 1.00 0.00 C ATOM 78 C TRP 317 48.683 -57.175 -36.964 1.00 0.00 C ATOM 79 O TRP 317 49.360 -56.164 -37.149 1.00 0.00 O ATOM 80 CB TRP 317 48.603 -58.182 -39.253 1.00 0.00 C ATOM 81 CEN TRP 317 48.971 -59.602 -40.214 1.00 0.00 C ATOM 82 H TRP 317 47.067 -56.030 -39.176 1.00 0.00 H ATOM 83 N PRO 318 48.696 -57.855 -35.822 1.00 0.00 N ATOM 84 CA PRO 318 49.491 -57.420 -34.681 1.00 0.00 C ATOM 85 C PRO 318 50.979 -57.629 -34.934 1.00 0.00 C ATOM 86 O PRO 318 51.371 -58.512 -35.698 1.00 0.00 O ATOM 87 CB PRO 318 48.977 -58.282 -33.515 1.00 0.00 C ATOM 88 CEN PRO 318 47.942 -59.020 -34.768 1.00 0.00 C ATOM 89 N TYR 319 51.804 -56.812 -34.289 1.00 0.00 N ATOM 90 CA TYR 319 53.251 -56.985 -34.342 1.00 0.00 C ATOM 91 C TYR 319 53.900 -56.603 -33.018 1.00 0.00 C ATOM 92 O TYR 319 53.498 -55.634 -32.374 1.00 0.00 O ATOM 93 CB TYR 319 53.849 -56.153 -35.478 1.00 0.00 C ATOM 94 CEN TYR 319 54.427 -56.334 -37.122 1.00 0.00 C ATOM 95 H TYR 319 51.419 -56.050 -33.748 1.00 0.00 H ATOM 96 N ILE 320 54.907 -57.370 -32.615 1.00 0.00 N ATOM 97 CA ILE 320 55.684 -57.052 -31.423 1.00 0.00 C ATOM 98 C ILE 320 57.119 -56.690 -31.781 1.00 0.00 C ATOM 99 O ILE 320 57.764 -57.377 -32.573 1.00 0.00 O ATOM 100 CB ILE 320 55.694 -58.226 -30.426 1.00 0.00 C ATOM 101 CEN ILE 320 55.160 -58.703 -29.604 1.00 0.00 C ATOM 102 H ILE 320 55.140 -58.196 -33.149 1.00 0.00 H ATOM 103 N ALA 321 57.615 -55.607 -31.192 1.00 0.00 N ATOM 104 CA ALA 321 58.994 -55.184 -31.403 1.00 0.00 C ATOM 105 C ALA 321 59.783 -55.210 -30.100 1.00 0.00 C ATOM 106 O ALA 321 59.244 -55.537 -29.042 1.00 0.00 O ATOM 107 CB ALA 321 59.033 -53.794 -32.023 1.00 0.00 C ATOM 108 CEN ALA 321 59.034 -53.795 -32.022 1.00 0.00 C ATOM 109 H ALA 321 57.021 -55.062 -30.584 1.00 0.00 H ATOM 110 N SER 322 61.063 -54.864 -30.183 1.00 0.00 N ATOM 111 CA SER 322 61.936 -54.870 -29.013 1.00 0.00 C ATOM 112 C SER 322 62.805 -53.620 -28.969 1.00 0.00 C ATOM 113 O SER 322 63.320 -53.173 -29.993 1.00 0.00 O ATOM 114 CB SER 322 62.800 -56.115 -29.014 1.00 0.00 C ATOM 115 CEN SER 322 63.100 -56.525 -29.209 1.00 0.00 C ATOM 116 H SER 322 61.442 -54.591 -31.078 1.00 0.00 H ATOM 117 N ARG 323 62.963 -53.058 -27.775 1.00 0.00 N ATOM 118 CA ARG 323 63.841 -51.912 -27.579 1.00 0.00 C ATOM 119 C ARG 323 65.301 -52.292 -27.794 1.00 0.00 C ATOM 120 O ARG 323 65.807 -53.225 -27.171 1.00 0.00 O ATOM 121 CB ARG 323 63.631 -51.254 -26.223 1.00 0.00 C ATOM 122 CEN ARG 323 62.803 -49.696 -24.479 1.00 0.00 C ATOM 123 H ARG 323 62.461 -53.436 -26.984 1.00 0.00 H ATOM 124 N THR 324 65.971 -51.564 -28.680 1.00 0.00 N ATOM 125 CA THR 324 67.390 -51.782 -28.933 1.00 0.00 C ATOM 126 C THR 324 68.232 -50.647 -28.365 1.00 0.00 C ATOM 127 O THR 324 69.435 -50.800 -28.150 1.00 0.00 O ATOM 128 CB THR 324 67.682 -51.919 -30.439 1.00 0.00 C ATOM 129 CEN THR 324 67.607 -52.184 -30.955 1.00 0.00 C ATOM 130 H THR 324 65.486 -50.841 -29.192 1.00 0.00 H ATOM 131 N SER 325 67.593 -49.507 -28.125 1.00 0.00 N ATOM 132 CA SER 325 68.278 -48.351 -27.556 1.00 0.00 C ATOM 133 C SER 325 67.296 -47.420 -26.855 1.00 0.00 C ATOM 134 O SER 325 66.154 -47.266 -27.289 1.00 0.00 O ATOM 135 CB SER 325 69.031 -47.605 -28.640 1.00 0.00 C ATOM 136 CEN SER 325 69.142 -47.398 -29.130 1.00 0.00 C ATOM 137 H SER 325 66.610 -49.439 -28.341 1.00 0.00 H ATOM 138 N ILE 326 67.747 -46.802 -25.770 1.00 0.00 N ATOM 139 CA ILE 326 66.973 -45.762 -25.103 1.00 0.00 C ATOM 140 C ILE 326 67.848 -44.564 -24.752 1.00 0.00 C ATOM 141 O ILE 326 68.786 -44.679 -23.963 1.00 0.00 O ATOM 142 CB ILE 326 66.303 -46.289 -23.822 1.00 0.00 C ATOM 143 CEN ILE 326 65.428 -46.799 -23.418 1.00 0.00 C ATOM 144 H ILE 326 68.650 -47.059 -25.396 1.00 0.00 H ATOM 145 N THR 327 67.535 -43.416 -25.342 1.00 0.00 N ATOM 146 CA THR 327 68.209 -42.170 -24.999 1.00 0.00 C ATOM 147 C THR 327 67.209 -41.039 -24.794 1.00 0.00 C ATOM 148 O THR 327 66.720 -40.447 -25.756 1.00 0.00 O ATOM 149 CB THR 327 69.219 -41.756 -26.086 1.00 0.00 C ATOM 150 CEN THR 327 69.694 -41.856 -26.411 1.00 0.00 C ATOM 151 H THR 327 66.811 -43.406 -26.045 1.00 0.00 H ATOM 152 N GLY 328 66.907 -40.745 -23.533 1.00 0.00 N ATOM 153 CA GLY 328 65.873 -39.773 -23.200 1.00 0.00 C ATOM 154 C GLY 328 64.502 -40.246 -23.666 1.00 0.00 C ATOM 155 O GLY 328 64.107 -41.383 -23.409 1.00 0.00 O ATOM 156 CEN GLY 328 65.873 -39.772 -23.200 1.00 0.00 C ATOM 157 H GLY 328 67.407 -41.207 -22.787 1.00 0.00 H ATOM 158 N ARG 329 63.780 -39.366 -24.352 1.00 0.00 N ATOM 159 CA ARG 329 62.435 -39.680 -24.822 1.00 0.00 C ATOM 160 C ARG 329 62.478 -40.514 -26.096 1.00 0.00 C ATOM 161 O ARG 329 61.461 -41.054 -26.530 1.00 0.00 O ATOM 162 CB ARG 329 61.586 -38.430 -25.003 1.00 0.00 C ATOM 163 CEN ARG 329 59.956 -36.621 -24.534 1.00 0.00 C ATOM 164 H ARG 329 64.171 -38.457 -24.552 1.00 0.00 H ATOM 165 N ALA 330 63.662 -40.616 -26.691 1.00 0.00 N ATOM 166 CA ALA 330 63.821 -41.302 -27.967 1.00 0.00 C ATOM 167 C ALA 330 64.336 -42.722 -27.770 1.00 0.00 C ATOM 168 O ALA 330 65.099 -42.992 -26.843 1.00 0.00 O ATOM 169 CB ALA 330 64.755 -40.517 -28.876 1.00 0.00 C ATOM 170 CEN ALA 330 64.755 -40.518 -28.876 1.00 0.00 C ATOM 171 H ALA 330 64.473 -40.209 -26.247 1.00 0.00 H ATOM 172 N TRP 331 63.915 -43.626 -28.647 1.00 0.00 N ATOM 173 CA TRP 331 64.312 -45.026 -28.557 1.00 0.00 C ATOM 174 C TRP 331 64.586 -45.611 -29.936 1.00 0.00 C ATOM 175 O TRP 331 63.965 -45.218 -30.923 1.00 0.00 O ATOM 176 CB TRP 331 63.231 -45.841 -27.845 1.00 0.00 C ATOM 177 CEN TRP 331 62.946 -46.814 -26.414 1.00 0.00 C ATOM 178 H TRP 331 63.303 -43.336 -29.397 1.00 0.00 H ATOM 179 N GLU 332 65.519 -46.555 -29.997 1.00 0.00 N ATOM 180 CA GLU 332 65.752 -47.324 -31.214 1.00 0.00 C ATOM 181 C GLU 332 65.106 -48.701 -31.126 1.00 0.00 C ATOM 182 O GLU 332 65.413 -49.486 -30.228 1.00 0.00 O ATOM 183 CB GLU 332 67.252 -47.463 -31.482 1.00 0.00 C ATOM 184 CEN GLU 332 68.659 -46.960 -32.301 1.00 0.00 C ATOM 185 H GLU 332 66.083 -46.743 -29.181 1.00 0.00 H ATOM 186 N ASN 333 64.210 -48.989 -32.064 1.00 0.00 N ATOM 187 CA ASN 333 63.331 -50.147 -31.953 1.00 0.00 C ATOM 188 C ASN 333 62.896 -50.641 -33.327 1.00 0.00 C ATOM 189 O ASN 333 63.003 -49.921 -34.319 1.00 0.00 O ATOM 190 CB ASN 333 62.117 -49.842 -31.096 1.00 0.00 C ATOM 191 CEN ASN 333 61.829 -49.925 -30.090 1.00 0.00 C ATOM 192 H ASN 333 64.137 -48.391 -32.874 1.00 0.00 H ATOM 193 N THR 334 62.403 -51.875 -33.378 1.00 0.00 N ATOM 194 CA THR 334 61.924 -52.457 -34.625 1.00 0.00 C ATOM 195 C THR 334 60.695 -53.326 -34.391 1.00 0.00 C ATOM 196 O THR 334 60.694 -54.194 -33.518 1.00 0.00 O ATOM 197 CB THR 334 63.014 -53.302 -35.311 1.00 0.00 C ATOM 198 CEN THR 334 63.543 -53.359 -35.554 1.00 0.00 C ATOM 199 H THR 334 62.361 -52.423 -32.531 1.00 0.00 H ATOM 200 N VAL 335 59.650 -53.089 -35.176 1.00 0.00 N ATOM 201 CA VAL 335 58.416 -53.856 -35.062 1.00 0.00 C ATOM 202 C VAL 335 58.341 -54.941 -36.128 1.00 0.00 C ATOM 203 O VAL 335 58.544 -54.675 -37.314 1.00 0.00 O ATOM 204 CB VAL 335 57.174 -52.952 -35.176 1.00 0.00 C ATOM 205 CEN VAL 335 56.652 -52.680 -34.819 1.00 0.00 C ATOM 206 H VAL 335 59.712 -52.357 -35.870 1.00 0.00 H ATOM 207 N VAL 336 58.051 -56.165 -35.701 1.00 0.00 N ATOM 208 CA VAL 336 58.008 -57.304 -36.610 1.00 0.00 C ATOM 209 C VAL 336 56.605 -57.891 -36.694 1.00 0.00 C ATOM 210 O VAL 336 56.087 -58.429 -35.715 1.00 0.00 O ATOM 211 CB VAL 336 58.991 -58.409 -36.178 1.00 0.00 C ATOM 212 CEN VAL 336 59.583 -58.719 -36.342 1.00 0.00 C ATOM 213 H VAL 336 57.853 -56.310 -34.721 1.00 0.00 H ATOM 214 N ASP 337 55.994 -57.783 -37.869 1.00 0.00 N ATOM 215 CA ASP 337 54.604 -58.187 -38.049 1.00 0.00 C ATOM 216 C ASP 337 54.506 -59.639 -38.498 1.00 0.00 C ATOM 217 O ASP 337 55.016 -60.007 -39.557 1.00 0.00 O ATOM 218 CB ASP 337 53.908 -57.275 -39.062 1.00 0.00 C ATOM 219 CEN ASP 337 53.300 -56.458 -39.094 1.00 0.00 C ATOM 220 H ASP 337 56.504 -57.412 -38.657 1.00 0.00 H ATOM 221 N LEU 338 53.850 -60.461 -37.687 1.00 0.00 N ATOM 222 CA LEU 338 53.803 -61.899 -37.927 1.00 0.00 C ATOM 223 C LEU 338 52.681 -62.260 -38.893 1.00 0.00 C ATOM 224 O LEU 338 52.708 -63.317 -39.522 1.00 0.00 O ATOM 225 CB LEU 338 53.630 -62.652 -36.603 1.00 0.00 C ATOM 226 CEN LEU 338 54.604 -63.459 -35.724 1.00 0.00 C ATOM 227 H LEU 338 53.370 -60.081 -36.884 1.00 0.00 H ATOM 228 N GLU 339 51.696 -61.376 -39.004 1.00 0.00 N ATOM 229 CA GLU 339 50.484 -61.671 -39.759 1.00 0.00 C ATOM 230 C GLU 339 50.384 -60.798 -41.003 1.00 0.00 C ATOM 231 O GLU 339 49.594 -61.075 -41.906 1.00 0.00 O ATOM 232 CB GLU 339 49.246 -61.477 -38.881 1.00 0.00 C ATOM 233 CEN GLU 339 48.017 -62.128 -37.895 1.00 0.00 C ATOM 234 H GLU 339 51.789 -60.476 -38.554 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 167 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 85.46 40.9 44 6.9 639 ARMSMC SECONDARY STRUCTURE . . 91.68 38.5 13 3.9 336 ARMSMC SURFACE . . . . . . . . 58.66 50.0 6 1.8 326 ARMSMC BURIED . . . . . . . . 88.96 39.5 38 12.1 313 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 259 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 240 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 138 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 135 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 124 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 170 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 116 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 95 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 58 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 34 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.12 (Number of atoms: 34) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.12 34 10.6 322 CRMSCA CRN = ALL/NP . . . . . 0.3272 CRMSCA SECONDARY STRUCTURE . . 9.05 10 6.0 168 CRMSCA SURFACE . . . . . . . . 13.46 9 5.5 164 CRMSCA BURIED . . . . . . . . 10.15 25 15.8 158 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.16 167 10.5 1589 CRMSMC SECONDARY STRUCTURE . . 9.35 50 6.0 834 CRMSMC SURFACE . . . . . . . . 13.70 45 5.6 807 CRMSMC BURIED . . . . . . . . 10.07 122 15.6 782 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.55 31 2.5 1219 CRMSSC RELIABLE SIDE CHAINS . 11.55 31 3.1 1005 CRMSSC SECONDARY STRUCTURE . . 10.61 10 1.6 638 CRMSSC SURFACE . . . . . . . . 14.13 9 1.4 630 CRMSSC BURIED . . . . . . . . 10.31 22 3.7 589 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.16 167 6.7 2507 CRMSALL SECONDARY STRUCTURE . . 9.35 50 3.8 1310 CRMSALL SURFACE . . . . . . . . 13.70 45 3.5 1286 CRMSALL BURIED . . . . . . . . 10.07 122 10.0 1221 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.190 1.000 0.500 34 10.6 322 ERRCA SECONDARY STRUCTURE . . 7.985 1.000 0.500 10 6.0 168 ERRCA SURFACE . . . . . . . . 12.529 1.000 0.500 9 5.5 164 ERRCA BURIED . . . . . . . . 9.349 1.000 0.500 25 15.8 158 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.234 1.000 0.500 167 10.5 1589 ERRMC SECONDARY STRUCTURE . . 8.335 1.000 0.500 50 6.0 834 ERRMC SURFACE . . . . . . . . 12.795 1.000 0.500 45 5.6 807 ERRMC BURIED . . . . . . . . 9.289 1.000 0.500 122 15.6 782 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.548 1.000 0.500 31 2.5 1219 ERRSC RELIABLE SIDE CHAINS . 10.548 1.000 0.500 31 3.1 1005 ERRSC SECONDARY STRUCTURE . . 9.444 1.000 0.500 10 1.6 638 ERRSC SURFACE . . . . . . . . 13.168 1.000 0.500 9 1.4 630 ERRSC BURIED . . . . . . . . 9.476 1.000 0.500 22 3.7 589 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.234 1.000 0.500 167 6.7 2507 ERRALL SECONDARY STRUCTURE . . 8.335 1.000 0.500 50 3.8 1310 ERRALL SURFACE . . . . . . . . 12.795 1.000 0.500 45 3.5 1286 ERRALL BURIED . . . . . . . . 9.289 1.000 0.500 122 10.0 1221 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 2 4 18 34 322 DISTCA CA (P) 0.31 0.31 0.62 1.24 5.59 322 DISTCA CA (RMS) 0.96 0.96 2.16 3.17 7.39 DISTCA ALL (N) 1 4 10 18 85 167 2507 DISTALL ALL (P) 0.04 0.16 0.40 0.72 3.39 2507 DISTALL ALL (RMS) 0.96 1.52 2.18 3.24 7.18 DISTALL END of the results output