####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 96 , name T0527AL396_1-D1 # Molecule2: number of CA atoms 99 ( 823), selected 96 , name T0527-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0527AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 96 20 - 121 2.84 2.84 LCS_AVERAGE: 96.97 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 63 58 - 121 1.95 3.16 LCS_AVERAGE: 50.42 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 82 - 107 0.95 3.03 LCS_AVERAGE: 16.11 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 96 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 20 A 20 11 26 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 21 G 21 11 26 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 22 L 22 11 26 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT W 23 W 23 11 26 96 13 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 24 D 24 11 26 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT W 25 W 25 11 26 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT N 26 N 26 11 26 96 13 34 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT P 27 P 27 11 26 96 7 24 50 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT K 28 K 28 11 26 96 5 24 50 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT T 29 T 29 11 26 96 10 38 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 30 G 30 11 26 96 6 19 46 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 31 A 31 4 26 96 3 16 34 61 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT M 32 M 32 6 26 96 3 8 16 24 37 77 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Y 33 Y 33 6 26 96 13 34 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 34 L 34 6 26 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT S 35 S 35 8 26 96 7 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT P 36 P 36 8 26 96 13 36 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT H 37 H 37 8 26 96 12 36 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT F 38 F 38 8 26 96 5 13 45 65 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT K 39 K 39 8 26 96 5 14 42 62 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT K 40 K 40 8 26 96 5 14 50 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT I 41 I 41 9 26 96 5 26 53 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT M 42 M 42 9 26 96 5 36 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 43 G 43 9 26 96 4 23 48 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Y 44 Y 44 9 26 96 3 9 31 44 66 77 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT E 45 E 45 9 26 96 5 8 15 19 37 59 73 86 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 46 D 46 9 17 96 5 9 15 19 37 59 73 86 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT H 47 H 47 9 17 96 5 9 15 18 25 40 59 70 76 84 93 94 95 95 95 95 96 96 96 96 LCS_GDT E 48 E 48 9 17 96 5 8 15 17 25 35 53 64 75 84 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 49 L 49 9 17 96 5 8 15 17 25 33 47 64 75 87 93 94 95 95 95 95 96 96 96 96 LCS_GDT P 50 P 50 4 17 96 3 4 13 18 25 33 44 64 70 79 90 94 95 95 95 95 96 96 96 96 LCS_GDT D 51 D 51 3 11 96 3 4 4 5 11 15 19 21 34 41 63 72 79 84 93 95 96 96 96 96 LCS_GDT T 54 T 54 0 51 96 0 0 0 18 25 33 40 63 73 82 91 94 95 95 95 95 96 96 96 96 LCS_GDT E 58 E 58 3 63 96 3 6 16 36 53 70 84 86 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT S 59 S 59 3 63 96 3 21 33 52 70 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT I 60 I 60 3 63 96 5 10 16 47 63 74 83 87 88 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT H 61 H 61 17 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT P 62 P 62 17 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 63 D 63 17 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 64 D 64 17 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 65 R 65 17 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 66 A 66 17 63 96 3 3 31 57 68 79 83 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 67 R 67 17 63 96 8 34 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT V 68 V 68 17 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 69 L 69 17 63 96 15 38 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 70 A 70 17 63 96 8 34 50 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 71 A 71 17 63 96 8 32 50 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 72 L 72 17 63 96 10 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT K 73 K 73 17 63 96 8 26 50 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 74 A 74 17 63 96 7 17 44 62 72 80 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT H 75 H 75 17 63 96 10 37 54 66 73 80 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 76 L 76 17 63 96 7 14 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT E 77 E 77 25 63 96 9 28 49 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT H 78 H 78 25 63 96 5 28 49 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 79 R 79 25 63 96 4 23 45 62 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 80 D 80 25 63 96 4 10 43 62 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT T 81 T 81 25 63 96 3 10 43 60 72 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Y 82 Y 82 26 63 96 3 38 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 83 D 83 26 63 96 15 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT V 84 V 84 26 63 96 16 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT E 85 E 85 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Y 86 Y 86 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 87 R 87 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT V 88 V 88 26 63 96 8 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 89 R 89 26 63 96 4 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT T 90 T 90 26 63 96 13 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 91 R 91 26 63 96 6 35 53 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT S 92 S 92 26 63 96 12 37 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 93 G 93 26 63 96 13 36 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 94 D 94 26 63 96 13 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT F 95 F 95 26 63 96 20 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 96 R 96 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT W 97 W 97 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT I 98 I 98 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Q 99 Q 99 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT S 100 S 100 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 101 R 101 26 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 102 G 102 26 63 96 15 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Q 103 Q 103 26 63 96 13 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 104 A 104 26 63 96 7 35 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT L 105 L 105 26 63 96 5 36 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT W 106 W 106 26 63 96 6 24 52 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT N 107 N 107 26 63 96 6 18 42 65 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT S 108 S 108 16 63 96 6 11 19 39 69 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT A 109 A 109 16 63 96 6 13 22 41 68 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 110 G 110 16 63 96 6 13 22 41 67 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT E 111 E 111 16 63 96 6 13 33 58 71 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT P 112 P 112 16 63 96 5 21 48 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT Y 113 Y 113 16 63 96 7 31 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT R 114 R 114 16 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT M 115 M 115 16 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT V 116 V 116 16 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT G 117 G 117 13 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT W 118 W 118 13 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT I 119 I 119 0 63 96 0 5 19 45 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_GDT D 121 D 121 0 63 96 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 LCS_AVERAGE LCS_A: 54.50 ( 16.11 50.42 96.97 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 24 39 54 66 73 81 84 87 89 90 93 94 95 95 95 95 96 96 96 96 GDT PERCENT_AT 24.24 39.39 54.55 66.67 73.74 81.82 84.85 87.88 89.90 90.91 93.94 94.95 95.96 95.96 95.96 95.96 96.97 96.97 96.97 96.97 GDT RMS_LOCAL 0.36 0.58 0.89 1.19 1.39 1.72 1.82 1.90 2.07 2.10 2.42 2.51 2.62 2.62 2.62 2.62 2.84 2.84 2.84 2.84 GDT RMS_ALL_AT 3.16 3.11 3.02 3.01 3.00 2.98 2.97 2.98 2.90 2.91 2.86 2.85 2.84 2.84 2.84 2.84 2.84 2.84 2.84 2.84 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 20 A 20 1.232 1 0.050 0.050 1.232 81.429 65.143 LGA G 21 G 21 0.990 0 0.073 0.073 1.181 85.952 85.952 LGA L 22 L 22 1.000 4 0.025 0.025 1.011 85.952 42.976 LGA W 23 W 23 0.891 10 0.066 0.066 1.008 88.214 25.204 LGA D 24 D 24 1.404 4 0.140 0.140 1.404 81.429 40.714 LGA W 25 W 25 1.277 10 0.032 0.032 1.313 81.429 23.265 LGA N 26 N 26 1.000 4 0.027 0.027 1.451 81.429 40.714 LGA P 27 P 27 1.590 3 0.058 0.058 1.650 75.000 42.857 LGA K 28 K 28 1.558 5 0.029 0.029 1.976 72.857 32.381 LGA T 29 T 29 1.699 3 0.058 0.058 2.246 70.952 40.544 LGA G 30 G 30 1.630 0 0.684 0.684 3.150 69.286 69.286 LGA A 31 A 31 2.697 1 0.050 0.050 2.837 62.976 50.381 LGA M 32 M 32 3.768 4 0.598 0.598 4.255 46.905 23.452 LGA Y 33 Y 33 1.018 8 0.077 0.077 1.539 79.286 26.429 LGA L 34 L 34 1.257 4 0.047 0.047 1.257 85.952 42.976 LGA S 35 S 35 0.742 2 0.101 0.101 0.936 90.476 60.317 LGA P 36 P 36 1.325 3 0.137 0.137 1.325 81.429 46.531 LGA H 37 H 37 1.046 6 0.066 0.066 1.378 81.429 32.571 LGA F 38 F 38 2.086 7 0.132 0.132 2.119 66.786 24.286 LGA K 39 K 39 2.274 5 0.023 0.023 2.297 64.762 28.783 LGA K 40 K 40 1.700 5 0.058 0.058 1.944 72.857 32.381 LGA I 41 I 41 1.465 4 0.099 0.099 1.844 75.000 37.500 LGA M 42 M 42 1.234 4 0.055 0.055 1.271 85.952 42.976 LGA G 43 G 43 2.131 0 0.235 0.235 3.131 63.333 63.333 LGA Y 44 Y 44 4.173 8 0.077 0.077 4.729 38.929 12.976 LGA E 45 E 45 6.191 5 0.056 0.056 6.191 20.357 9.048 LGA D 46 D 46 5.685 4 0.016 0.016 6.456 19.286 9.643 LGA H 47 H 47 7.683 6 0.015 0.015 8.700 7.024 2.810 LGA E 48 E 48 7.851 5 0.098 0.098 7.897 7.143 3.175 LGA L 49 L 49 7.162 4 0.266 0.266 8.453 7.976 3.988 LGA P 50 P 50 8.715 3 0.617 0.617 9.557 2.976 1.701 LGA D 51 D 51 12.133 4 0.691 0.691 12.133 0.000 0.000 LGA T 54 T 54 7.467 3 0.454 0.454 7.467 10.833 6.190 LGA E 58 E 58 4.390 5 0.189 0.189 4.390 45.119 20.053 LGA S 59 S 59 2.995 2 0.196 0.196 2.995 60.952 40.635 LGA I 60 I 60 3.805 4 0.370 0.370 5.185 44.405 22.202 LGA H 61 H 61 1.624 6 0.025 0.025 1.624 75.000 30.000 LGA P 62 P 62 1.674 3 0.024 0.024 1.741 77.143 44.082 LGA D 63 D 63 1.137 4 0.054 0.054 1.337 81.429 40.714 LGA D 64 D 64 1.090 4 0.115 0.115 1.154 81.429 40.714 LGA R 65 R 65 1.346 7 0.126 0.126 2.255 75.119 27.316 LGA A 66 A 66 3.350 1 0.190 0.190 4.191 48.571 38.857 LGA R 67 R 67 1.593 7 0.074 0.074 1.724 75.000 27.273 LGA V 68 V 68 1.245 3 0.028 0.028 1.249 81.429 46.531 LGA L 69 L 69 1.514 4 0.061 0.061 1.537 75.000 37.500 LGA A 70 A 70 2.039 1 0.018 0.018 2.110 66.786 53.429 LGA A 71 A 71 2.223 1 0.097 0.097 2.286 66.786 53.429 LGA L 72 L 72 1.574 4 0.026 0.026 1.580 77.143 38.571 LGA K 73 K 73 2.098 5 0.027 0.027 2.318 66.786 29.683 LGA A 74 A 74 2.921 1 0.066 0.066 3.016 57.262 45.810 LGA H 75 H 75 2.414 6 0.084 0.084 2.414 68.810 27.524 LGA L 76 L 76 1.649 4 0.144 0.144 1.661 75.000 37.500 LGA E 77 E 77 2.155 5 0.043 0.043 2.608 64.881 28.836 LGA H 78 H 78 2.071 6 0.036 0.036 2.559 64.881 25.952 LGA R 79 R 79 2.621 7 0.157 0.157 2.965 59.048 21.472 LGA D 80 D 80 2.679 4 0.117 0.117 2.679 65.119 32.560 LGA T 81 T 81 2.827 3 0.063 0.063 3.149 61.190 34.966 LGA Y 82 Y 82 1.325 8 0.252 0.252 1.325 88.214 29.405 LGA D 83 D 83 0.742 4 0.262 0.262 1.360 88.214 44.107 LGA V 84 V 84 0.428 3 0.061 0.061 0.545 97.619 55.782 LGA E 85 E 85 0.323 5 0.031 0.031 0.447 100.000 44.444 LGA Y 86 Y 86 0.667 8 0.019 0.019 0.898 90.476 30.159 LGA R 87 R 87 1.288 7 0.091 0.091 1.476 81.429 29.610 LGA V 88 V 88 1.459 3 0.045 0.045 1.459 81.429 46.531 LGA R 89 R 89 1.048 7 0.016 0.016 1.254 85.952 31.255 LGA T 90 T 90 0.707 3 0.095 0.095 1.165 88.214 50.408 LGA R 91 R 91 1.453 7 0.050 0.050 1.588 81.548 29.654 LGA S 92 S 92 0.730 2 0.132 0.132 0.942 90.476 60.317 LGA G 93 G 93 1.660 0 0.125 0.125 1.660 75.000 75.000 LGA D 94 D 94 1.314 4 0.109 0.109 1.435 85.952 42.976 LGA F 95 F 95 1.235 7 0.019 0.019 1.384 81.429 29.610 LGA R 96 R 96 1.140 7 0.123 0.123 1.486 81.429 29.610 LGA W 97 W 97 1.159 10 0.087 0.087 1.159 83.690 23.912 LGA I 98 I 98 0.350 4 0.021 0.021 0.680 97.619 48.810 LGA Q 99 Q 99 0.463 5 0.041 0.041 0.624 95.238 42.328 LGA S 100 S 100 0.464 2 0.034 0.034 0.464 100.000 66.667 LGA R 101 R 101 0.190 7 0.060 0.060 0.876 95.238 34.632 LGA G 102 G 102 1.480 0 0.159 0.159 1.480 88.214 88.214 LGA Q 103 Q 103 0.597 5 0.065 0.065 1.413 85.952 38.201 LGA A 104 A 104 1.636 1 0.139 0.139 1.636 79.286 63.429 LGA L 105 L 105 0.759 4 0.051 0.051 1.040 88.214 44.107 LGA W 106 W 106 1.224 10 0.028 0.028 1.687 81.548 23.299 LGA N 107 N 107 1.839 4 0.032 0.032 2.785 67.143 33.571 LGA S 108 S 108 4.074 2 0.060 0.060 4.986 38.929 25.952 LGA A 109 A 109 4.055 1 0.025 0.025 4.680 37.262 29.810 LGA G 110 G 110 3.981 0 0.020 0.020 3.981 43.333 43.333 LGA E 111 E 111 2.842 5 0.046 0.046 2.975 62.976 27.989 LGA P 112 P 112 2.175 3 0.038 0.038 2.489 64.762 37.007 LGA Y 113 Y 113 1.826 8 0.104 0.104 2.058 70.833 23.611 LGA R 114 R 114 1.731 7 0.053 0.053 1.731 77.143 28.052 LGA M 115 M 115 1.450 4 0.060 0.060 1.585 79.286 39.643 LGA V 116 V 116 1.145 3 0.019 0.019 1.249 85.952 49.116 LGA G 117 G 117 0.770 0 0.029 0.029 0.853 90.476 90.476 LGA W 118 W 118 0.753 10 0.068 0.068 0.757 90.476 25.850 LGA I 119 I 119 2.960 4 0.064 0.064 4.179 52.143 26.071 LGA D 121 D 121 1.293 4 0.050 0.050 1.896 79.286 39.643 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 96 384 384 100.00 798 384 48.12 99 SUMMARY(RMSD_GDC): 2.837 2.796 2.796 67.599 35.744 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 99 4.0 87 1.90 72.475 70.974 4.352 LGA_LOCAL RMSD: 1.899 Number of atoms: 87 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.984 Number of assigned atoms: 96 Std_ASGN_ATOMS RMSD: 2.837 Standard rmsd on all 96 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.941831 * X + -0.092444 * Y + 0.323123 * Z + 36.532356 Y_new = -0.238616 * X + -0.493127 * Y + -0.836593 * Z + 102.517822 Z_new = 0.236679 * X + -0.865032 * Y + 0.442383 * Z + -3.233539 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.893460 -0.238946 -1.098065 [DEG: -165.7831 -13.6906 -62.9145 ] ZXZ: 0.368586 1.112542 2.874522 [DEG: 21.1184 63.7439 164.6980 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0527AL396_1-D1 REMARK 2: T0527-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0527AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 99 4.0 87 1.90 70.974 2.84 REMARK ---------------------------------------------------------- MOLECULE T0527AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3h9w_A ATOM 5 N ALA 20 47.497 27.775 9.233 1.00 0.00 N ATOM 6 CA ALA 20 46.759 26.584 9.643 1.00 0.00 C ATOM 7 C ALA 20 45.273 26.916 9.659 1.00 0.00 C ATOM 8 O ALA 20 44.879 28.029 9.997 1.00 0.00 O ATOM 9 N GLY 21 44.448 25.949 9.285 1.00 0.00 N ATOM 10 CA GLY 21 43.012 26.156 9.252 1.00 0.00 C ATOM 11 C GLY 21 42.350 25.312 10.320 1.00 0.00 C ATOM 12 O GLY 21 42.319 24.084 10.221 1.00 0.00 O ATOM 13 N LEU 22 41.819 25.958 11.367 1.00 0.00 N ATOM 14 CA LEU 22 41.156 25.234 12.449 1.00 0.00 C ATOM 15 C LEU 22 39.753 24.806 12.040 1.00 0.00 C ATOM 16 O LEU 22 39.100 25.482 11.241 1.00 0.00 O ATOM 17 N TRP 23 39.303 23.676 12.572 1.00 0.00 N ATOM 18 CA TRP 23 37.963 23.184 12.276 1.00 0.00 C ATOM 19 C TRP 23 37.511 22.202 13.352 1.00 0.00 C ATOM 20 O TRP 23 38.327 21.668 14.111 1.00 0.00 O ATOM 21 N ASP 24 36.205 21.973 13.402 1.00 0.00 N ATOM 22 CA ASP 24 35.603 21.056 14.355 1.00 0.00 C ATOM 23 C ASP 24 34.359 20.472 13.714 1.00 0.00 C ATOM 24 O ASP 24 33.631 21.173 13.000 1.00 0.00 O ATOM 25 N TRP 25 34.132 19.189 13.965 1.00 0.00 N ATOM 26 CA TRP 25 32.983 18.469 13.426 1.00 0.00 C ATOM 27 C TRP 25 32.170 17.820 14.541 1.00 0.00 C ATOM 28 O TRP 25 32.723 17.150 15.415 1.00 0.00 O ATOM 29 N ASN 26 30.858 18.022 14.506 1.00 0.00 N ATOM 30 CA ASN 26 29.961 17.421 15.490 1.00 0.00 C ATOM 31 C ASN 26 29.792 15.981 15.020 1.00 0.00 C ATOM 32 O ASN 26 29.257 15.737 13.945 1.00 0.00 O ATOM 33 N PRO 27 30.265 15.033 15.821 1.00 0.00 N ATOM 34 CA PRO 27 30.202 13.624 15.470 1.00 0.00 C ATOM 35 C PRO 27 28.796 13.101 15.182 1.00 0.00 C ATOM 36 O PRO 27 28.591 12.354 14.225 1.00 0.00 O ATOM 37 N LYS 28 27.830 13.501 15.999 1.00 0.00 N ATOM 38 CA LYS 28 26.453 13.041 15.831 1.00 0.00 C ATOM 39 C LYS 28 25.835 13.444 14.495 1.00 0.00 C ATOM 40 O LYS 28 25.267 12.610 13.794 1.00 0.00 O ATOM 41 N THR 29 25.949 14.718 14.143 1.00 0.00 N ATOM 42 CA THR 29 25.383 15.220 12.895 1.00 0.00 C ATOM 43 C THR 29 26.392 15.215 11.748 1.00 0.00 C ATOM 44 O THR 29 26.019 15.341 10.579 1.00 0.00 O ATOM 45 N GLY 30 28.389 17.463 11.057 1.00 0.00 N ATOM 46 CA GLY 30 28.387 18.787 10.456 1.00 0.00 C ATOM 47 C GLY 30 29.523 19.620 11.041 1.00 0.00 C ATOM 48 O GLY 30 29.953 19.390 12.171 1.00 0.00 O ATOM 49 N ALA 31 30.012 20.581 10.267 1.00 0.00 N ATOM 50 CA ALA 31 31.084 21.451 10.726 1.00 0.00 C ATOM 51 C ALA 31 30.544 22.458 11.732 1.00 0.00 C ATOM 52 O ALA 31 29.582 23.172 11.450 1.00 0.00 O ATOM 53 N MET 32 31.160 22.501 12.908 1.00 0.00 N ATOM 54 CA MET 32 30.763 23.444 13.952 1.00 0.00 C ATOM 55 C MET 32 31.382 24.782 13.546 1.00 0.00 C ATOM 56 O MET 32 30.774 25.847 13.683 1.00 0.00 O ATOM 57 N TYR 33 32.606 24.713 13.035 1.00 0.00 N ATOM 58 CA TYR 33 33.303 25.898 12.574 1.00 0.00 C ATOM 59 C TYR 33 34.508 25.478 11.743 1.00 0.00 C ATOM 60 O TYR 33 34.971 24.340 11.828 1.00 0.00 O ATOM 61 N LEU 34 34.975 26.399 10.912 1.00 0.00 N ATOM 62 CA LEU 34 36.151 26.183 10.089 1.00 0.00 C ATOM 63 C LEU 34 36.721 27.562 9.800 1.00 0.00 C ATOM 64 O LEU 34 35.993 28.475 9.414 1.00 0.00 O ATOM 65 N SER 35 38.021 27.711 10.027 1.00 0.00 N ATOM 66 CA SER 35 38.679 28.987 9.816 1.00 0.00 C ATOM 67 C SER 35 38.468 29.644 8.466 1.00 0.00 C ATOM 68 O SER 35 38.348 28.959 7.446 1.00 0.00 O ATOM 69 N PRO 36 38.419 30.984 8.427 1.00 0.00 N ATOM 70 CA PRO 36 38.221 31.705 7.168 1.00 0.00 C ATOM 71 C PRO 36 39.355 31.492 6.173 1.00 0.00 C ATOM 72 O PRO 36 39.184 31.712 4.979 1.00 0.00 O ATOM 73 N HIS 37 40.510 31.048 6.658 1.00 0.00 N ATOM 74 CA HIS 37 41.653 30.807 5.777 1.00 0.00 C ATOM 75 C HIS 37 41.332 29.706 4.755 1.00 0.00 C ATOM 76 O HIS 37 42.027 29.567 3.744 1.00 0.00 O ATOM 77 N PHE 38 40.285 28.923 5.018 1.00 0.00 N ATOM 78 CA PHE 38 39.906 27.840 4.107 1.00 0.00 C ATOM 79 C PHE 38 39.448 28.404 2.764 1.00 0.00 C ATOM 80 O PHE 38 39.551 27.740 1.724 1.00 0.00 O ATOM 81 N LYS 39 38.950 29.636 2.785 1.00 0.00 N ATOM 82 CA LYS 39 38.470 30.283 1.569 1.00 0.00 C ATOM 83 C LYS 39 39.647 30.763 0.725 1.00 0.00 C ATOM 84 O LYS 39 39.673 30.576 -0.497 1.00 0.00 O ATOM 85 N LYS 40 40.635 31.372 1.372 1.00 0.00 N ATOM 86 CA LYS 40 41.803 31.846 0.642 1.00 0.00 C ATOM 87 C LYS 40 42.553 30.656 0.051 1.00 0.00 C ATOM 88 O LYS 40 43.066 30.729 -1.066 1.00 0.00 O ATOM 89 N ILE 41 42.606 29.556 0.802 1.00 0.00 N ATOM 90 CA ILE 41 43.308 28.364 0.351 1.00 0.00 C ATOM 91 C ILE 41 42.571 27.568 -0.730 1.00 0.00 C ATOM 92 O ILE 41 43.146 27.250 -1.775 1.00 0.00 O ATOM 93 N MET 42 41.308 27.237 -0.484 1.00 0.00 N ATOM 94 CA MET 42 40.546 26.436 -1.449 1.00 0.00 C ATOM 95 C MET 42 39.479 27.163 -2.273 1.00 0.00 C ATOM 96 O MET 42 38.785 26.540 -3.084 1.00 0.00 O ATOM 97 N GLY 43 39.341 28.468 -2.059 1.00 0.00 N ATOM 98 CA GLY 43 38.391 29.255 -2.825 1.00 0.00 C ATOM 99 C GLY 43 36.903 29.181 -2.513 1.00 0.00 C ATOM 100 O GLY 43 36.195 30.178 -2.660 1.00 0.00 O ATOM 101 N TYR 44 36.406 28.022 -2.101 1.00 0.00 N ATOM 102 CA TYR 44 34.982 27.910 -1.805 1.00 0.00 C ATOM 103 C TYR 44 34.638 28.868 -0.671 1.00 0.00 C ATOM 104 O TYR 44 35.454 29.097 0.217 1.00 0.00 O ATOM 105 N GLU 45 33.427 29.452 -0.691 1.00 0.00 N ATOM 106 CA GLU 45 33.051 30.372 0.386 1.00 0.00 C ATOM 107 C GLU 45 33.176 29.642 1.722 1.00 0.00 C ATOM 108 O GLU 45 32.812 28.474 1.826 1.00 0.00 O ATOM 109 N ASP 46 33.701 30.322 2.731 1.00 0.00 N ATOM 110 CA ASP 46 33.857 29.714 4.041 1.00 0.00 C ATOM 111 C ASP 46 32.543 29.098 4.513 1.00 0.00 C ATOM 112 O ASP 46 32.518 27.985 5.046 1.00 0.00 O ATOM 113 N HIS 47 31.445 29.811 4.297 1.00 0.00 N ATOM 114 CA HIS 47 30.151 29.310 4.732 1.00 0.00 C ATOM 115 C HIS 47 29.650 28.073 4.006 1.00 0.00 C ATOM 116 O HIS 47 28.660 27.469 4.426 1.00 0.00 O ATOM 117 N GLU 48 30.327 27.688 2.924 1.00 0.00 N ATOM 118 CA GLU 48 29.928 26.522 2.132 1.00 0.00 C ATOM 119 C GLU 48 30.347 25.191 2.757 1.00 0.00 C ATOM 120 O GLU 48 29.875 24.129 2.348 1.00 0.00 O ATOM 121 N LEU 49 31.244 25.244 3.731 1.00 0.00 N ATOM 122 CA LEU 49 31.692 24.026 4.394 1.00 0.00 C ATOM 123 C LEU 49 30.682 23.664 5.471 1.00 0.00 C ATOM 124 O LEU 49 30.838 24.035 6.631 1.00 0.00 O ATOM 125 N PRO 50 29.643 22.934 5.067 1.00 0.00 N ATOM 126 CA PRO 50 28.560 22.534 5.964 1.00 0.00 C ATOM 127 C PRO 50 28.749 21.207 6.697 1.00 0.00 C ATOM 128 O PRO 50 28.428 21.104 7.882 1.00 0.00 O ATOM 129 N ASP 51 29.251 20.190 6.003 1.00 0.00 N ATOM 130 CA ASP 51 29.449 18.887 6.633 1.00 0.00 C ATOM 131 C ASP 51 30.598 18.093 6.031 1.00 0.00 C ATOM 132 O ASP 51 31.254 18.524 5.079 1.00 0.00 O ATOM 133 N THR 54 30.808 16.906 6.587 1.00 0.00 N ATOM 134 CA THR 54 31.858 16.013 6.129 1.00 0.00 C ATOM 135 C THR 54 31.690 15.699 4.651 1.00 0.00 C ATOM 136 O THR 54 32.669 15.466 3.933 1.00 0.00 O ATOM 137 N GLY 55 30.443 15.699 4.191 1.00 0.00 N ATOM 138 CA GLY 55 30.148 15.416 2.792 1.00 0.00 C ATOM 139 C GLY 55 30.854 16.424 1.892 1.00 0.00 C ATOM 140 O GLY 55 31.354 16.076 0.819 1.00 0.00 O ATOM 141 N HIS 56 30.896 17.679 2.331 1.00 0.00 N ATOM 142 CA HIS 56 31.554 18.733 1.553 1.00 0.00 C ATOM 143 C HIS 56 33.059 18.471 1.510 1.00 0.00 C ATOM 144 O HIS 56 33.710 18.640 0.479 1.00 0.00 O ATOM 145 N ARG 57 33.601 18.068 2.651 1.00 0.00 N ATOM 146 CA ARG 57 35.020 17.759 2.779 1.00 0.00 C ATOM 147 C ARG 57 35.374 16.589 1.860 1.00 0.00 C ATOM 148 O ARG 57 36.387 16.619 1.155 1.00 0.00 O ATOM 149 N GLU 58 34.530 15.562 1.869 1.00 0.00 N ATOM 150 CA GLU 58 34.743 14.370 1.044 1.00 0.00 C ATOM 151 C GLU 58 34.618 14.650 -0.453 1.00 0.00 C ATOM 152 O GLU 58 35.332 14.062 -1.271 1.00 0.00 O ATOM 153 N SER 59 33.705 15.543 -0.814 1.00 0.00 N ATOM 154 CA SER 59 33.495 15.882 -2.216 1.00 0.00 C ATOM 155 C SER 59 34.625 16.722 -2.800 1.00 0.00 C ATOM 156 O SER 59 35.057 16.494 -3.927 1.00 0.00 O ATOM 157 N ILE 60 35.105 17.685 -2.023 1.00 0.00 N ATOM 158 CA ILE 60 36.166 18.586 -2.465 1.00 0.00 C ATOM 159 C ILE 60 37.538 17.950 -2.287 1.00 0.00 C ATOM 160 O ILE 60 38.413 18.480 -1.597 1.00 0.00 O ATOM 161 N HIS 61 40.516 15.072 -4.417 1.00 0.00 N ATOM 162 CA HIS 61 40.940 14.374 -5.631 1.00 0.00 C ATOM 163 C HIS 61 40.278 12.992 -5.659 1.00 0.00 C ATOM 164 O HIS 61 40.158 12.335 -4.623 1.00 0.00 O ATOM 165 N PRO 62 39.832 12.532 -6.846 1.00 0.00 N ATOM 166 CA PRO 62 39.183 11.221 -6.957 1.00 0.00 C ATOM 167 C PRO 62 39.988 10.021 -6.453 1.00 0.00 C ATOM 168 O PRO 62 39.417 9.089 -5.890 1.00 0.00 O ATOM 169 N ASP 63 41.303 10.038 -6.644 1.00 0.00 N ATOM 170 CA ASP 63 42.128 8.925 -6.192 1.00 0.00 C ATOM 171 C ASP 63 42.356 8.968 -4.684 1.00 0.00 C ATOM 172 O ASP 63 42.780 7.981 -4.082 1.00 0.00 O ATOM 173 N ASP 64 42.081 10.116 -4.073 1.00 0.00 N ATOM 174 CA ASP 64 42.249 10.248 -2.636 1.00 0.00 C ATOM 175 C ASP 64 40.936 9.933 -1.933 1.00 0.00 C ATOM 176 O ASP 64 40.924 9.375 -0.831 1.00 0.00 O ATOM 177 N ARG 65 39.823 10.273 -2.572 1.00 0.00 N ATOM 178 CA ARG 65 38.521 9.986 -1.985 1.00 0.00 C ATOM 179 C ARG 65 38.450 8.475 -1.811 1.00 0.00 C ATOM 180 O ARG 65 37.752 7.980 -0.939 1.00 0.00 O ATOM 181 N ALA 66 39.198 7.763 -2.652 1.00 0.00 N ATOM 182 CA ALA 66 39.244 6.299 -2.646 1.00 0.00 C ATOM 183 C ALA 66 39.804 5.663 -1.374 1.00 0.00 C ATOM 184 O ALA 66 39.681 4.449 -1.185 1.00 0.00 O ATOM 185 N ARG 67 40.408 6.461 -0.496 1.00 0.00 N ATOM 186 CA ARG 67 40.977 5.893 0.722 1.00 0.00 C ATOM 187 C ARG 67 40.873 6.772 1.960 1.00 0.00 C ATOM 188 O ARG 67 40.710 6.270 3.071 1.00 0.00 O ATOM 189 N VAL 68 40.969 8.083 1.767 1.00 0.00 N ATOM 190 CA VAL 68 40.920 9.025 2.883 1.00 0.00 C ATOM 191 C VAL 68 39.630 8.954 3.697 1.00 0.00 C ATOM 192 O VAL 68 39.662 8.919 4.926 1.00 0.00 O ATOM 193 N LEU 69 38.495 8.937 3.013 1.00 0.00 N ATOM 194 CA LEU 69 37.218 8.875 3.702 1.00 0.00 C ATOM 195 C LEU 69 37.120 7.629 4.582 1.00 0.00 C ATOM 196 O LEU 69 36.812 7.725 5.771 1.00 0.00 O ATOM 197 N ALA 70 37.402 6.460 4.015 1.00 0.00 N ATOM 198 CA ALA 70 37.327 5.218 4.787 1.00 0.00 C ATOM 199 C ALA 70 38.309 5.195 5.954 1.00 0.00 C ATOM 200 O ALA 70 37.973 4.743 7.048 1.00 0.00 O ATOM 201 N ALA 71 39.523 5.674 5.713 1.00 0.00 N ATOM 202 CA ALA 71 40.537 5.711 6.754 1.00 0.00 C ATOM 203 C ALA 71 40.066 6.605 7.908 1.00 0.00 C ATOM 204 O ALA 71 40.017 6.172 9.058 1.00 0.00 O ATOM 205 N LEU 72 39.690 7.843 7.605 1.00 0.00 N ATOM 206 CA LEU 72 39.253 8.750 8.664 1.00 0.00 C ATOM 207 C LEU 72 38.037 8.245 9.435 1.00 0.00 C ATOM 208 O LEU 72 37.964 8.393 10.654 1.00 0.00 O ATOM 209 N LYS 73 37.087 7.648 8.727 1.00 0.00 N ATOM 210 CA LYS 73 35.900 7.107 9.371 1.00 0.00 C ATOM 211 C LYS 73 36.288 6.013 10.364 1.00 0.00 C ATOM 212 O LYS 73 35.876 6.034 11.525 1.00 0.00 O ATOM 213 N ALA 74 37.091 5.063 9.901 1.00 0.00 N ATOM 214 CA ALA 74 37.533 3.951 10.737 1.00 0.00 C ATOM 215 C ALA 74 38.277 4.422 11.985 1.00 0.00 C ATOM 216 O ALA 74 38.008 3.954 13.088 1.00 0.00 O ATOM 217 N HIS 75 39.216 5.346 11.811 1.00 0.00 N ATOM 218 CA HIS 75 39.984 5.850 12.941 1.00 0.00 C ATOM 219 C HIS 75 39.131 6.649 13.915 1.00 0.00 C ATOM 220 O HIS 75 39.291 6.530 15.133 1.00 0.00 O ATOM 221 N LEU 76 38.226 7.463 13.382 1.00 0.00 N ATOM 222 CA LEU 76 37.345 8.270 14.218 1.00 0.00 C ATOM 223 C LEU 76 36.435 7.386 15.072 1.00 0.00 C ATOM 224 O LEU 76 36.309 7.598 16.278 1.00 0.00 O ATOM 225 N GLU 77 35.808 6.397 14.445 1.00 0.00 N ATOM 226 CA GLU 77 34.917 5.488 15.156 1.00 0.00 C ATOM 227 C GLU 77 35.657 4.764 16.278 1.00 0.00 C ATOM 228 O GLU 77 35.069 4.437 17.306 1.00 0.00 O ATOM 229 N HIS 78 36.947 4.514 16.078 1.00 0.00 N ATOM 230 CA HIS 78 37.747 3.834 17.089 1.00 0.00 C ATOM 231 C HIS 78 38.313 4.814 18.111 1.00 0.00 C ATOM 232 O HIS 78 39.018 4.413 19.037 1.00 0.00 O ATOM 233 N ARG 79 37.999 6.096 17.939 1.00 0.00 N ATOM 234 CA ARG 79 38.481 7.115 18.856 1.00 0.00 C ATOM 235 C ARG 79 39.985 7.316 18.801 1.00 0.00 C ATOM 236 O ARG 79 40.595 7.789 19.760 1.00 0.00 O ATOM 237 N ASP 80 40.587 6.968 17.669 1.00 0.00 N ATOM 238 CA ASP 80 42.030 7.098 17.501 1.00 0.00 C ATOM 239 C ASP 80 42.415 8.331 16.680 1.00 0.00 C ATOM 240 O ASP 80 41.955 8.495 15.554 1.00 0.00 O ATOM 241 N THR 81 43.254 9.199 17.242 1.00 0.00 N ATOM 242 CA THR 81 43.684 10.393 16.516 1.00 0.00 C ATOM 243 C THR 81 44.378 9.947 15.255 1.00 0.00 C ATOM 244 O THR 81 45.032 8.911 15.236 1.00 0.00 O ATOM 245 N TYR 82 44.244 10.729 14.194 1.00 0.00 N ATOM 246 CA TYR 82 44.865 10.357 12.935 1.00 0.00 C ATOM 247 C TYR 82 45.143 11.581 12.087 1.00 0.00 C ATOM 248 O TYR 82 44.772 12.699 12.445 1.00 0.00 O ATOM 249 N ASP 83 45.803 11.358 10.957 1.00 0.00 N ATOM 250 CA ASP 83 46.116 12.433 10.026 1.00 0.00 C ATOM 251 C ASP 83 46.219 11.819 8.638 1.00 0.00 C ATOM 252 O ASP 83 46.545 10.643 8.504 1.00 0.00 O ATOM 253 N VAL 84 45.922 12.611 7.614 1.00 0.00 N ATOM 254 CA VAL 84 45.982 12.142 6.235 1.00 0.00 C ATOM 255 C VAL 84 46.431 13.252 5.302 1.00 0.00 C ATOM 256 O VAL 84 46.105 14.423 5.506 1.00 0.00 O ATOM 257 N GLU 85 47.195 12.871 4.285 1.00 0.00 N ATOM 258 CA GLU 85 47.683 13.808 3.285 1.00 0.00 C ATOM 259 C GLU 85 46.907 13.524 2.009 1.00 0.00 C ATOM 260 O GLU 85 46.823 12.377 1.574 1.00 0.00 O ATOM 261 N TYR 86 46.331 14.562 1.415 1.00 0.00 N ATOM 262 CA TYR 86 45.575 14.379 0.187 1.00 0.00 C ATOM 263 C TYR 86 45.481 15.664 -0.621 1.00 0.00 C ATOM 264 O TYR 86 45.820 16.759 -0.148 1.00 0.00 O ATOM 265 N ARG 87 45.019 15.512 -1.856 1.00 0.00 N ATOM 266 CA ARG 87 44.850 16.627 -2.762 1.00 0.00 C ATOM 267 C ARG 87 43.432 17.152 -2.614 1.00 0.00 C ATOM 268 O ARG 87 42.461 16.462 -2.944 1.00 0.00 O ATOM 269 N VAL 88 43.315 18.366 -2.085 1.00 0.00 N ATOM 270 CA VAL 88 42.016 18.994 -1.897 1.00 0.00 C ATOM 271 C VAL 88 41.662 19.712 -3.186 1.00 0.00 C ATOM 272 O VAL 88 42.540 20.196 -3.900 1.00 0.00 O ATOM 273 N ARG 89 40.373 19.782 -3.476 1.00 0.00 N ATOM 274 CA ARG 89 39.893 20.427 -4.691 1.00 0.00 C ATOM 275 C ARG 89 39.589 21.900 -4.470 1.00 0.00 C ATOM 276 O ARG 89 38.759 22.252 -3.632 1.00 0.00 O ATOM 277 N THR 90 40.270 22.759 -5.220 1.00 0.00 N ATOM 278 CA THR 90 40.046 24.194 -5.136 1.00 0.00 C ATOM 279 C THR 90 38.796 24.462 -5.972 1.00 0.00 C ATOM 280 O THR 90 38.505 23.703 -6.901 1.00 0.00 O ATOM 281 N ARG 91 38.044 25.514 -5.661 1.00 0.00 N ATOM 282 CA ARG 91 36.844 25.774 -6.452 1.00 0.00 C ATOM 283 C ARG 91 37.164 25.987 -7.929 1.00 0.00 C ATOM 284 O ARG 91 36.357 25.637 -8.792 1.00 0.00 O ATOM 285 N SER 92 38.335 26.547 -8.235 1.00 0.00 N ATOM 286 CA SER 92 38.678 26.778 -9.638 1.00 0.00 C ATOM 287 C SER 92 39.095 25.512 -10.389 1.00 0.00 C ATOM 288 O SER 92 39.462 25.567 -11.563 1.00 0.00 O ATOM 289 N GLY 93 39.038 24.371 -9.713 1.00 0.00 N ATOM 290 CA GLY 93 39.373 23.124 -10.376 1.00 0.00 C ATOM 291 C GLY 93 40.733 22.507 -10.132 1.00 0.00 C ATOM 292 O GLY 93 40.892 21.306 -10.346 1.00 0.00 O ATOM 293 N ASP 94 41.721 23.290 -9.704 1.00 0.00 N ATOM 294 CA ASP 94 43.028 22.703 -9.458 1.00 0.00 C ATOM 295 C ASP 94 43.091 22.081 -8.066 1.00 0.00 C ATOM 296 O ASP 94 42.225 22.326 -7.221 1.00 0.00 O ATOM 297 N PHE 95 44.117 21.269 -7.837 1.00 0.00 N ATOM 298 CA PHE 95 44.290 20.576 -6.568 1.00 0.00 C ATOM 299 C PHE 95 45.357 21.184 -5.672 1.00 0.00 C ATOM 300 O PHE 95 46.389 21.656 -6.151 1.00 0.00 O ATOM 301 N ARG 96 45.097 21.165 -4.366 1.00 0.00 N ATOM 302 CA ARG 96 46.031 21.687 -3.377 1.00 0.00 C ATOM 303 C ARG 96 46.312 20.592 -2.347 1.00 0.00 C ATOM 304 O ARG 96 45.389 20.027 -1.761 1.00 0.00 O ATOM 305 N TRP 97 47.591 20.295 -2.143 1.00 0.00 N ATOM 306 CA TRP 97 48.004 19.283 -1.187 1.00 0.00 C ATOM 307 C TRP 97 47.763 19.758 0.235 1.00 0.00 C ATOM 308 O TRP 97 48.301 20.782 0.661 1.00 0.00 O ATOM 309 N ILE 98 46.971 18.987 0.966 1.00 0.00 N ATOM 310 CA ILE 98 46.625 19.319 2.337 1.00 0.00 C ATOM 311 C ILE 98 46.866 18.161 3.297 1.00 0.00 C ATOM 312 O ILE 98 46.768 16.991 2.926 1.00 0.00 O ATOM 313 N GLN 99 47.215 18.508 4.530 1.00 0.00 N ATOM 314 CA GLN 99 47.411 17.533 5.587 1.00 0.00 C ATOM 315 C GLN 99 46.310 17.858 6.584 1.00 0.00 C ATOM 316 O GLN 99 46.220 18.983 7.070 1.00 0.00 O ATOM 317 N SER 100 45.461 16.879 6.862 1.00 0.00 N ATOM 318 CA SER 100 44.369 17.060 7.804 1.00 0.00 C ATOM 319 C SER 100 44.793 16.283 9.055 1.00 0.00 C ATOM 320 O SER 100 45.117 15.095 8.973 1.00 0.00 O ATOM 321 N ARG 101 44.824 16.970 10.196 1.00 0.00 N ATOM 322 CA ARG 101 45.221 16.375 11.471 1.00 0.00 C ATOM 323 C ARG 101 44.014 16.391 12.378 1.00 0.00 C ATOM 324 O ARG 101 43.429 17.445 12.623 1.00 0.00 O ATOM 325 N GLY 102 43.664 15.215 12.890 1.00 0.00 N ATOM 326 CA GLY 102 42.465 15.056 13.695 1.00 0.00 C ATOM 327 C GLY 102 42.616 14.498 15.095 1.00 0.00 C ATOM 328 O GLY 102 43.250 13.462 15.305 1.00 0.00 O ATOM 329 N GLN 103 42.005 15.192 16.047 1.00 0.00 N ATOM 330 CA GLN 103 41.988 14.747 17.429 1.00 0.00 C ATOM 331 C GLN 103 40.537 14.348 17.694 1.00 0.00 C ATOM 332 O GLN 103 39.622 15.101 17.361 1.00 0.00 O ATOM 333 N ALA 104 40.328 13.170 18.277 1.00 0.00 N ATOM 334 CA ALA 104 38.977 12.686 18.573 1.00 0.00 C ATOM 335 C ALA 104 38.613 12.988 20.022 1.00 0.00 C ATOM 336 O ALA 104 39.342 12.619 20.937 1.00 0.00 O ATOM 337 N LEU 105 37.481 13.658 20.217 1.00 0.00 N ATOM 338 CA LEU 105 37.007 14.022 21.550 1.00 0.00 C ATOM 339 C LEU 105 35.856 13.119 21.989 1.00 0.00 C ATOM 340 O LEU 105 34.920 12.882 21.225 1.00 0.00 O ATOM 341 N TRP 106 35.930 12.623 23.221 1.00 0.00 N ATOM 342 CA TRP 106 34.893 11.753 23.774 1.00 0.00 C ATOM 343 C TRP 106 34.126 12.493 24.863 1.00 0.00 C ATOM 344 O TRP 106 34.688 13.345 25.550 1.00 0.00 O ATOM 345 N ASN 107 32.843 12.167 25.013 1.00 0.00 N ATOM 346 CA ASN 107 32.005 12.808 26.023 1.00 0.00 C ATOM 347 C ASN 107 32.161 12.132 27.379 1.00 0.00 C ATOM 348 O ASN 107 32.928 11.180 27.523 1.00 0.00 O ATOM 349 N SER 108 31.415 12.620 28.365 1.00 0.00 N ATOM 350 CA SER 108 31.473 12.081 29.722 1.00 0.00 C ATOM 351 C SER 108 31.180 10.592 29.837 1.00 0.00 C ATOM 352 O SER 108 31.635 9.945 30.779 1.00 0.00 O ATOM 353 N ALA 109 30.422 10.043 28.893 1.00 0.00 N ATOM 354 CA ALA 109 30.104 8.620 28.937 1.00 0.00 C ATOM 355 C ALA 109 31.125 7.787 28.168 1.00 0.00 C ATOM 356 O ALA 109 30.997 6.566 28.063 1.00 0.00 O ATOM 357 N GLY 110 32.140 8.455 27.628 1.00 0.00 N ATOM 358 CA GLY 110 33.177 7.751 26.895 1.00 0.00 C ATOM 359 C GLY 110 32.907 7.531 25.419 1.00 0.00 C ATOM 360 O GLY 110 33.657 6.817 24.754 1.00 0.00 O ATOM 361 N GLU 111 31.846 8.138 24.899 1.00 0.00 N ATOM 362 CA GLU 111 31.518 7.980 23.490 1.00 0.00 C ATOM 363 C GLU 111 32.047 9.142 22.655 1.00 0.00 C ATOM 364 O GLU 111 32.151 10.271 23.138 1.00 0.00 O ATOM 365 N PRO 112 32.389 8.853 21.402 1.00 0.00 N ATOM 366 CA PRO 112 32.901 9.870 20.486 1.00 0.00 C ATOM 367 C PRO 112 31.882 11.000 20.380 1.00 0.00 C ATOM 368 O PRO 112 30.713 10.770 20.072 1.00 0.00 O ATOM 369 N TYR 113 32.334 12.223 20.629 1.00 0.00 N ATOM 370 CA TYR 113 31.454 13.379 20.601 1.00 0.00 C ATOM 371 C TYR 113 31.768 14.366 19.482 1.00 0.00 C ATOM 372 O TYR 113 30.867 14.977 18.907 1.00 0.00 O ATOM 373 N ARG 114 33.045 14.528 19.168 1.00 0.00 N ATOM 374 CA ARG 114 33.415 15.456 18.121 1.00 0.00 C ATOM 375 C ARG 114 34.811 15.204 17.607 1.00 0.00 C ATOM 376 O ARG 114 35.565 14.410 18.171 1.00 0.00 O ATOM 377 N MET 115 35.137 15.887 16.516 1.00 0.00 N ATOM 378 CA MET 115 36.448 15.804 15.889 1.00 0.00 C ATOM 379 C MET 115 36.939 17.245 15.805 1.00 0.00 C ATOM 380 O MET 115 36.208 18.126 15.357 1.00 0.00 O ATOM 381 N VAL 116 38.169 17.487 16.243 1.00 0.00 N ATOM 382 CA VAL 116 38.740 18.830 16.224 1.00 0.00 C ATOM 383 C VAL 116 40.149 18.755 15.655 1.00 0.00 C ATOM 384 O VAL 116 40.904 17.842 15.978 1.00 0.00 O ATOM 385 N GLY 117 40.518 19.716 14.823 1.00 0.00 N ATOM 386 CA GLY 117 41.854 19.669 14.274 1.00 0.00 C ATOM 387 C GLY 117 42.213 20.845 13.407 1.00 0.00 C ATOM 388 O GLY 117 41.631 21.926 13.521 1.00 0.00 O ATOM 389 N TRP 118 43.179 20.622 12.526 1.00 0.00 N ATOM 390 CA TRP 118 43.646 21.660 11.622 1.00 0.00 C ATOM 391 C TRP 118 43.912 21.080 10.242 1.00 0.00 C ATOM 392 O TRP 118 44.251 19.908 10.109 1.00 0.00 O ATOM 393 N ILE 119 46.293 21.827 6.920 1.00 0.00 N ATOM 394 CA ILE 119 47.519 22.540 6.579 1.00 0.00 C ATOM 395 C ILE 119 47.827 22.434 5.094 1.00 0.00 C ATOM 396 O ILE 119 47.688 21.362 4.502 1.00 0.00 O ATOM 397 N ASP 121 48.261 23.544 4.506 1.00 0.00 N ATOM 398 CA ASP 121 48.650 23.580 3.101 1.00 0.00 C ATOM 399 C ASP 121 50.059 22.989 3.089 1.00 0.00 C ATOM 400 O ASP 121 50.968 23.548 3.708 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 384 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 33.06 82.8 180 93.3 193 ARMSMC SECONDARY STRUCTURE . . 25.91 87.6 105 94.6 111 ARMSMC SURFACE . . . . . . . . 37.88 79.7 118 91.5 129 ARMSMC BURIED . . . . . . . . 21.02 88.7 62 96.9 64 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 74 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 71 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 42 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 3 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.84 (Number of atoms: 96) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.84 96 97.0 99 CRMSCA CRN = ALL/NP . . . . . 0.0295 CRMSCA SECONDARY STRUCTURE . . 1.81 56 98.2 57 CRMSCA SURFACE . . . . . . . . 3.25 63 95.5 66 CRMSCA BURIED . . . . . . . . 1.82 33 100.0 33 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.80 384 78.7 488 CRMSMC SECONDARY STRUCTURE . . 1.80 224 79.4 282 CRMSMC SURFACE . . . . . . . . 3.20 252 77.3 326 CRMSMC BURIED . . . . . . . . 1.77 132 81.5 162 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 427 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 377 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 279 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 297 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 130 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.80 384 46.7 823 CRMSALL SECONDARY STRUCTURE . . 1.80 224 44.2 507 CRMSALL SURFACE . . . . . . . . 3.20 252 44.9 561 CRMSALL BURIED . . . . . . . . 1.77 132 50.4 262 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.195 1.000 0.500 96 97.0 99 ERRCA SECONDARY STRUCTURE . . 1.518 1.000 0.500 56 98.2 57 ERRCA SURFACE . . . . . . . . 2.537 1.000 0.500 63 95.5 66 ERRCA BURIED . . . . . . . . 1.542 1.000 0.500 33 100.0 33 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.153 1.000 0.500 384 78.7 488 ERRMC SECONDARY STRUCTURE . . 1.507 1.000 0.500 224 79.4 282 ERRMC SURFACE . . . . . . . . 2.510 1.000 0.500 252 77.3 326 ERRMC BURIED . . . . . . . . 1.472 1.000 0.500 132 81.5 162 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 427 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 377 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 279 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 297 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 130 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.153 1.000 0.500 384 46.7 823 ERRALL SECONDARY STRUCTURE . . 1.507 1.000 0.500 224 44.2 507 ERRALL SURFACE . . . . . . . . 2.510 1.000 0.500 252 44.9 561 ERRALL BURIED . . . . . . . . 1.472 1.000 0.500 132 50.4 262 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 24 58 73 90 95 96 99 DISTCA CA (P) 24.24 58.59 73.74 90.91 95.96 99 DISTCA CA (RMS) 0.67 1.20 1.57 2.20 2.62 DISTCA ALL (N) 107 239 295 356 381 384 823 DISTALL ALL (P) 13.00 29.04 35.84 43.26 46.29 823 DISTALL ALL (RMS) 0.69 1.21 1.54 2.09 2.65 DISTALL END of the results output