####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 98 ( 392), selected 96 , name T0527AL285_1-D1 # Molecule2: number of CA atoms 99 ( 823), selected 96 , name T0527-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0527AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 96 22 - 121 2.84 2.84 LCS_AVERAGE: 96.97 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 50 72 - 121 1.98 3.11 LCS_AVERAGE: 36.08 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 82 - 104 0.93 3.02 LCS_AVERAGE: 14.18 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 96 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 22 L 22 6 22 96 9 20 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT W 23 W 23 6 22 96 7 27 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 24 D 24 6 22 96 9 23 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT W 25 W 25 6 22 96 9 24 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT N 26 N 26 6 22 96 6 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT P 27 P 27 6 22 96 7 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT K 28 K 28 4 22 96 4 4 10 31 54 63 72 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT T 29 T 29 4 22 96 4 4 4 5 6 7 17 27 62 79 88 93 96 96 96 96 96 96 96 96 LCS_GDT G 30 G 30 4 22 96 3 15 41 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 31 A 31 4 22 96 3 3 14 27 61 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT M 32 M 32 12 22 96 3 7 19 34 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Y 33 Y 33 12 22 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT L 34 L 34 12 22 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT S 35 S 35 12 22 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT P 36 P 36 12 22 96 9 28 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT H 37 H 37 12 22 96 9 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT F 38 F 38 12 22 96 9 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT K 39 K 39 12 22 96 9 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT K 40 K 40 12 22 96 9 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT I 41 I 41 12 22 96 5 20 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT M 42 M 42 12 22 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT G 43 G 43 12 22 96 4 17 42 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Y 44 Y 44 11 18 96 6 18 35 56 62 73 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 45 E 45 11 18 96 5 13 23 34 53 64 76 82 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 46 D 46 11 18 96 4 13 20 31 47 64 71 80 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT H 47 H 47 11 18 96 5 13 17 25 37 54 69 75 84 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 48 E 48 11 18 96 5 13 17 25 35 54 69 75 87 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT L 49 L 49 11 18 96 4 13 17 22 39 61 71 77 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT P 50 P 50 11 18 96 6 11 17 28 46 64 71 77 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 51 D 51 4 15 96 3 4 7 10 30 39 51 62 72 87 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 52 E 52 4 13 96 3 11 21 27 31 37 45 64 77 88 93 94 96 96 96 96 96 96 96 96 LCS_GDT I 53 I 53 4 13 96 3 11 20 27 34 47 60 74 83 90 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 58 E 58 5 7 96 4 14 28 51 65 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT S 59 S 59 5 7 96 4 10 30 51 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT I 60 I 60 5 7 96 4 14 45 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT H 61 H 61 5 7 96 4 11 31 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT P 62 P 62 5 7 96 4 26 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 63 D 63 5 7 96 4 4 23 51 60 74 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 64 D 64 5 17 96 5 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 65 R 65 14 19 96 4 13 14 15 29 58 73 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 66 A 66 14 19 96 10 13 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 67 R 67 14 19 96 9 13 14 21 31 59 78 83 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT V 68 V 68 14 39 96 10 13 14 14 42 64 76 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT L 69 L 69 14 41 96 10 21 45 57 64 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 70 A 70 14 41 96 10 19 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 71 A 71 14 41 96 10 13 16 42 60 70 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT L 72 L 72 14 50 96 10 18 39 56 64 74 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT K 73 K 73 14 50 96 10 13 27 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 74 A 74 14 50 96 10 19 36 56 65 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT H 75 H 75 14 50 96 10 18 45 57 64 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT L 76 L 76 14 50 96 6 13 14 49 64 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 77 E 77 14 50 96 10 13 14 35 62 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT H 78 H 78 14 50 96 4 10 26 51 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 79 R 79 6 50 96 3 8 26 51 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 80 D 80 6 50 96 3 5 25 45 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT T 81 T 81 18 50 96 3 14 27 52 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Y 82 Y 82 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 83 D 83 23 50 96 7 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT V 84 V 84 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 85 E 85 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Y 86 Y 86 23 50 96 4 16 40 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 87 R 87 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT V 88 V 88 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 89 R 89 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT T 90 T 90 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 91 R 91 23 50 96 4 17 41 56 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT S 92 S 92 23 50 96 6 24 42 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT G 93 G 93 23 50 96 8 29 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 94 D 94 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT F 95 F 95 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 96 R 96 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT W 97 W 97 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT I 98 I 98 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Q 99 Q 99 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT S 100 S 100 23 50 96 8 21 45 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 101 R 101 23 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT G 102 G 102 23 50 96 8 20 46 57 65 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Q 103 Q 103 23 50 96 7 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 104 A 104 23 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT L 105 L 105 18 50 96 6 16 38 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT W 106 W 106 18 50 96 8 16 36 56 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT N 107 N 107 18 50 96 8 16 36 56 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT S 108 S 108 18 50 96 7 16 27 48 65 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT A 109 A 109 18 50 96 8 16 33 48 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT G 110 G 110 18 50 96 8 15 22 33 57 73 81 83 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT E 111 E 111 18 50 96 8 15 22 48 65 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT P 112 P 112 18 50 96 8 21 39 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT Y 113 Y 113 18 50 96 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT R 114 R 114 18 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT M 115 M 115 18 50 96 8 21 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT V 116 V 116 18 50 96 8 21 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT G 117 G 117 18 50 96 8 20 28 55 64 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT W 118 W 118 15 50 96 4 27 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT I 119 I 119 8 50 96 8 19 40 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT M 120 M 120 8 50 96 8 26 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_GDT D 121 D 121 8 50 96 8 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 LCS_AVERAGE LCS_A: 49.08 ( 14.18 36.08 96.97 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 30 46 57 66 76 81 84 88 91 93 94 96 96 96 96 96 96 96 96 GDT PERCENT_AT 12.12 30.30 46.46 57.58 66.67 76.77 81.82 84.85 88.89 91.92 93.94 94.95 96.97 96.97 96.97 96.97 96.97 96.97 96.97 96.97 GDT RMS_LOCAL 0.38 0.70 0.99 1.22 1.61 1.83 1.95 2.10 2.30 2.46 2.59 2.67 2.84 2.84 2.84 2.84 2.84 2.84 2.84 2.84 GDT RMS_ALL_AT 2.91 2.95 3.01 2.98 3.01 3.05 3.01 2.97 2.91 2.87 2.85 2.84 2.84 2.84 2.84 2.84 2.84 2.84 2.84 2.84 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 22 L 22 1.620 4 0.140 0.140 1.784 79.405 39.702 LGA W 23 W 23 1.154 10 0.051 0.051 1.892 79.286 22.653 LGA D 24 D 24 1.805 4 0.110 0.110 1.805 75.000 37.500 LGA W 25 W 25 1.726 10 0.143 0.143 1.817 77.143 22.041 LGA N 26 N 26 1.586 4 0.250 0.250 2.158 72.976 36.488 LGA P 27 P 27 1.267 3 0.073 0.073 2.391 72.976 41.701 LGA K 28 K 28 4.451 5 0.203 0.203 5.847 33.690 14.974 LGA T 29 T 29 6.898 3 0.142 0.142 6.898 19.524 11.156 LGA G 30 G 30 1.817 0 0.644 0.644 2.874 71.071 71.071 LGA A 31 A 31 3.269 1 0.069 0.069 3.474 55.714 44.571 LGA M 32 M 32 2.551 4 0.623 0.623 3.155 63.333 31.667 LGA Y 33 Y 33 0.445 8 0.030 0.030 1.319 88.333 29.444 LGA L 34 L 34 0.737 4 0.477 0.477 1.543 86.071 43.036 LGA S 35 S 35 0.837 2 0.102 0.102 0.837 90.476 60.317 LGA P 36 P 36 1.305 3 0.034 0.034 1.342 85.952 49.116 LGA H 37 H 37 0.983 6 0.125 0.125 0.999 92.857 37.143 LGA F 38 F 38 0.523 7 0.044 0.044 0.628 92.857 33.766 LGA K 39 K 39 0.528 5 0.018 0.018 1.018 90.595 40.265 LGA K 40 K 40 0.962 5 0.175 0.175 1.476 88.214 39.206 LGA I 41 I 41 1.258 4 0.070 0.070 1.837 81.548 40.774 LGA M 42 M 42 0.539 4 0.017 0.017 1.233 88.214 44.107 LGA G 43 G 43 2.054 0 0.172 0.172 3.091 65.238 65.238 LGA Y 44 Y 44 3.201 8 0.061 0.061 3.820 52.024 17.341 LGA E 45 E 45 5.395 5 0.061 0.061 5.469 27.500 12.222 LGA D 46 D 46 5.783 4 0.080 0.080 6.219 19.286 9.643 LGA H 47 H 47 7.168 6 0.051 0.051 7.620 10.119 4.048 LGA E 48 E 48 6.612 5 0.106 0.106 6.612 15.238 6.772 LGA L 49 L 49 5.280 4 0.545 0.545 8.018 17.381 8.690 LGA P 50 P 50 5.505 3 0.114 0.114 5.794 25.119 14.354 LGA D 51 D 51 8.882 4 0.033 0.033 10.103 3.214 1.607 LGA E 52 E 52 7.387 5 0.208 0.208 7.387 11.667 5.185 LGA I 53 I 53 6.725 4 0.081 0.081 6.905 16.310 8.155 LGA E 58 E 58 3.004 5 0.289 0.289 3.716 56.190 24.974 LGA S 59 S 59 2.757 2 0.039 0.039 2.757 60.952 40.635 LGA I 60 I 60 1.580 4 0.108 0.108 3.043 67.143 33.571 LGA H 61 H 61 2.197 6 0.675 0.675 4.248 59.881 23.952 LGA P 62 P 62 1.538 3 0.092 0.092 2.259 68.810 39.320 LGA D 63 D 63 3.161 4 0.119 0.119 3.161 57.262 28.631 LGA D 64 D 64 0.834 4 0.667 0.667 3.650 72.262 36.131 LGA R 65 R 65 4.691 7 0.561 0.561 4.691 43.690 15.887 LGA A 66 A 66 1.667 1 0.142 0.142 2.519 64.881 51.905 LGA R 67 R 67 4.027 7 0.047 0.047 4.027 45.119 16.407 LGA V 68 V 68 4.236 3 0.053 0.053 4.236 45.119 25.782 LGA L 69 L 69 2.273 4 0.026 0.026 2.771 66.905 33.452 LGA A 70 A 70 1.820 1 0.026 0.026 2.189 70.952 56.762 LGA A 71 A 71 3.390 1 0.037 0.037 3.390 55.357 44.286 LGA L 72 L 72 2.977 4 0.080 0.080 2.977 60.952 30.476 LGA K 73 K 73 1.807 5 0.076 0.076 1.977 75.000 33.333 LGA A 74 A 74 2.606 1 0.030 0.030 2.606 62.976 50.381 LGA H 75 H 75 2.618 6 0.051 0.051 2.618 62.857 25.143 LGA L 76 L 76 2.767 4 0.062 0.062 3.151 59.167 29.583 LGA E 77 E 77 3.142 5 0.081 0.081 3.870 52.024 23.122 LGA H 78 H 78 3.030 6 0.132 0.132 3.182 51.786 20.714 LGA R 79 R 79 2.999 7 0.130 0.130 3.667 51.905 18.874 LGA D 80 D 80 3.353 4 0.141 0.141 3.353 55.476 27.738 LGA T 81 T 81 2.781 3 0.071 0.071 3.324 61.190 34.966 LGA Y 82 Y 82 0.983 8 0.148 0.148 0.983 90.476 30.159 LGA D 83 D 83 1.065 4 0.180 0.180 1.244 83.690 41.845 LGA V 84 V 84 1.109 3 0.056 0.056 1.159 85.952 49.116 LGA E 85 E 85 0.385 5 0.063 0.063 1.487 90.595 40.265 LGA Y 86 Y 86 1.678 8 0.156 0.156 1.678 81.548 27.183 LGA R 87 R 87 0.846 7 0.078 0.078 0.986 90.476 32.900 LGA V 88 V 88 0.655 3 0.084 0.084 0.686 92.857 53.061 LGA R 89 R 89 0.695 7 0.029 0.029 0.803 90.476 32.900 LGA T 90 T 90 0.587 3 0.695 0.695 2.943 79.881 45.646 LGA R 91 R 91 2.231 7 0.068 0.068 2.231 64.762 23.550 LGA S 92 S 92 1.694 2 0.070 0.070 1.790 77.143 51.429 LGA G 93 G 93 0.705 0 0.029 0.029 0.937 90.476 90.476 LGA D 94 D 94 0.599 4 0.059 0.059 0.779 90.476 45.238 LGA F 95 F 95 0.719 7 0.054 0.054 1.382 88.214 32.078 LGA R 96 R 96 1.014 7 0.067 0.067 1.014 90.595 32.944 LGA W 97 W 97 1.229 10 0.038 0.038 1.454 81.429 23.265 LGA I 98 I 98 0.964 4 0.073 0.073 1.031 88.214 44.107 LGA Q 99 Q 99 1.074 5 0.049 0.049 1.830 79.405 35.291 LGA S 100 S 100 1.585 2 0.076 0.076 1.820 72.857 48.571 LGA R 101 R 101 1.086 7 0.061 0.061 1.258 81.429 29.610 LGA G 102 G 102 2.107 0 0.159 0.159 2.107 70.833 70.833 LGA Q 103 Q 103 1.026 5 0.030 0.030 1.610 79.286 35.238 LGA A 104 A 104 0.474 1 0.079 0.079 0.732 92.857 74.286 LGA L 105 L 105 1.605 4 0.050 0.050 1.605 79.286 39.643 LGA W 106 W 106 2.327 10 0.085 0.085 3.418 59.167 16.905 LGA N 107 N 107 2.306 4 0.063 0.063 4.935 51.071 25.536 LGA S 108 S 108 4.011 2 0.711 0.711 4.985 38.810 25.873 LGA A 109 A 109 3.694 1 0.562 0.562 5.311 39.167 31.333 LGA G 110 G 110 4.435 0 0.213 0.213 4.435 40.238 40.238 LGA E 111 E 111 3.122 5 0.055 0.055 3.403 59.405 26.402 LGA P 112 P 112 1.874 3 0.016 0.016 2.637 66.905 38.231 LGA Y 113 Y 113 1.165 8 0.120 0.120 1.972 79.286 26.429 LGA R 114 R 114 1.432 7 0.052 0.052 1.432 85.952 31.255 LGA M 115 M 115 1.670 4 0.046 0.046 1.670 75.000 37.500 LGA V 116 V 116 1.651 3 0.034 0.034 2.223 70.833 40.476 LGA G 117 G 117 2.508 0 0.262 0.262 2.508 66.905 66.905 LGA W 118 W 118 1.525 10 0.172 0.172 2.395 72.976 20.850 LGA I 119 I 119 1.952 4 0.115 0.115 1.952 75.000 37.500 LGA M 120 M 120 1.480 4 0.071 0.071 1.965 79.286 39.643 LGA D 121 D 121 1.402 4 0.034 0.034 1.402 81.429 40.714 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 96 384 384 100.00 807 384 47.58 99 SUMMARY(RMSD_GDC): 2.837 2.812 2.812 63.948 33.186 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 98 99 4.0 84 2.10 67.424 64.416 3.820 LGA_LOCAL RMSD: 2.099 Number of atoms: 84 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.972 Number of assigned atoms: 96 Std_ASGN_ATOMS RMSD: 2.837 Standard rmsd on all 96 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.498382 * X + 0.252009 * Y + 0.829522 * Z + 71.761414 Y_new = -0.283274 * X + -0.951638 * Y + 0.118915 * Z + -27.320501 Z_new = 0.819372 * X + -0.175717 * Y + 0.545667 * Z + -15.295434 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.624743 -0.960315 -0.311536 [DEG: -150.3867 -55.0220 -17.8497 ] ZXZ: 1.713180 0.993611 1.782049 [DEG: 98.1580 56.9297 102.1039 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0527AL285_1-D1 REMARK 2: T0527-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0527AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 98 99 4.0 84 2.10 64.416 2.84 REMARK ---------------------------------------------------------- MOLECULE T0527AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3ewkA ATOM 1 N LEU 22 42.104 24.898 9.576 1.00 0.00 N ATOM 2 CA LEU 22 41.311 24.397 10.727 1.00 0.00 C ATOM 3 C LEU 22 39.758 24.256 10.479 1.00 0.00 C ATOM 4 O LEU 22 39.016 25.176 10.029 1.00 0.00 O ATOM 5 N TRP 23 39.265 23.062 10.752 1.00 0.00 N ATOM 6 CA TRP 23 37.799 22.901 10.815 1.00 0.00 C ATOM 7 C TRP 23 37.351 21.889 11.893 1.00 0.00 C ATOM 8 O TRP 23 38.147 21.051 12.395 1.00 0.00 O ATOM 9 N ASP 24 36.068 22.008 12.228 1.00 0.00 N ATOM 10 CA ASP 24 35.347 21.127 13.170 1.00 0.00 C ATOM 11 C ASP 24 34.009 20.689 12.587 1.00 0.00 C ATOM 12 O ASP 24 33.279 21.476 11.967 1.00 0.00 O ATOM 13 N TRP 25 33.709 19.417 12.801 1.00 0.00 N ATOM 14 CA TRP 25 32.483 18.823 12.302 1.00 0.00 C ATOM 15 C TRP 25 31.784 18.083 13.405 1.00 0.00 C ATOM 16 O TRP 25 32.421 17.778 14.440 1.00 0.00 O ATOM 17 N ASN 26 30.475 17.810 13.229 1.00 0.00 N ATOM 18 CA ASN 26 29.807 16.838 14.105 1.00 0.00 C ATOM 19 C ASN 26 30.201 15.463 13.740 1.00 0.00 C ATOM 20 O ASN 26 31.015 15.262 12.868 1.00 0.00 O ATOM 21 N PRO 27 29.569 14.490 14.363 1.00 0.00 N ATOM 22 CA PRO 27 29.959 13.144 14.119 1.00 0.00 C ATOM 23 C PRO 27 29.763 12.710 12.668 1.00 0.00 C ATOM 24 O PRO 27 30.363 11.696 12.228 1.00 0.00 O ATOM 25 N LYS 28 28.917 13.435 11.918 1.00 0.00 N ATOM 26 CA LYS 28 28.605 12.974 10.599 1.00 0.00 C ATOM 27 C LYS 28 29.417 13.686 9.573 1.00 0.00 C ATOM 28 O LYS 28 29.342 13.300 8.392 1.00 0.00 O ATOM 29 N THR 29 30.211 14.699 9.992 1.00 0.00 N ATOM 30 CA THR 29 31.101 15.328 9.033 1.00 0.00 C ATOM 31 C THR 29 30.573 16.678 8.591 1.00 0.00 C ATOM 32 O THR 29 31.160 17.342 7.785 1.00 0.00 O ATOM 33 N GLY 30 29.477 17.122 9.181 1.00 0.00 N ATOM 34 CA GLY 30 28.942 18.418 8.806 1.00 0.00 C ATOM 35 C GLY 30 29.795 19.474 9.505 1.00 0.00 C ATOM 36 O GLY 30 29.980 19.432 10.717 1.00 0.00 O ATOM 37 N ALA 31 30.295 20.408 8.712 1.00 0.00 N ATOM 38 CA ALA 31 31.224 21.456 9.163 1.00 0.00 C ATOM 39 C ALA 31 30.448 22.382 10.076 1.00 0.00 C ATOM 40 O ALA 31 29.427 22.972 9.668 1.00 0.00 O ATOM 41 N MET 32 30.901 22.487 11.317 1.00 0.00 N ATOM 42 CA MET 32 30.332 23.451 12.260 1.00 0.00 C ATOM 43 C MET 32 31.209 24.682 12.229 1.00 0.00 C ATOM 44 O MET 32 30.749 25.805 12.498 1.00 0.00 O ATOM 45 N TYR 33 32.483 24.441 11.888 1.00 0.00 N ATOM 46 CA TYR 33 33.525 25.459 11.793 1.00 0.00 C ATOM 47 C TYR 33 34.829 24.939 11.223 1.00 0.00 C ATOM 48 O TYR 33 35.157 23.822 11.539 1.00 0.00 O ATOM 49 N LEU 34 35.645 25.617 10.412 1.00 0.00 N ATOM 50 CA LEU 34 35.518 26.696 9.372 1.00 0.00 C ATOM 51 C LEU 34 36.470 27.942 9.534 1.00 0.00 C ATOM 52 O LEU 34 36.078 29.086 9.263 1.00 0.00 O ATOM 53 N SER 35 37.728 27.726 9.942 1.00 0.00 N ATOM 54 CA SER 35 38.622 28.906 10.187 1.00 0.00 C ATOM 55 C SER 35 39.045 29.710 8.983 1.00 0.00 C ATOM 56 O SER 35 38.701 29.372 7.854 1.00 0.00 O ATOM 57 N PRO 36 39.804 30.774 9.225 1.00 0.00 N ATOM 58 CA PRO 36 40.083 31.771 8.163 1.00 0.00 C ATOM 59 C PRO 36 40.984 31.267 7.060 1.00 0.00 C ATOM 60 O PRO 36 40.652 31.392 5.885 1.00 0.00 O ATOM 61 N HIS 37 42.105 30.669 7.446 1.00 0.00 N ATOM 62 CA HIS 37 42.966 29.899 6.549 1.00 0.00 C ATOM 63 C HIS 37 42.190 28.860 5.741 1.00 0.00 C ATOM 64 O HIS 37 42.302 28.806 4.533 1.00 0.00 O ATOM 65 N PHE 38 41.383 28.030 6.392 1.00 0.00 N ATOM 66 CA PHE 38 40.591 27.046 5.639 1.00 0.00 C ATOM 67 C PHE 38 39.778 27.727 4.512 1.00 0.00 C ATOM 68 O PHE 38 39.778 27.288 3.385 1.00 0.00 O ATOM 69 N LYS 39 39.122 28.823 4.834 1.00 0.00 N ATOM 70 CA LYS 39 38.341 29.564 3.843 1.00 0.00 C ATOM 71 C LYS 39 39.266 30.147 2.805 1.00 0.00 C ATOM 72 O LYS 39 38.978 30.100 1.582 1.00 0.00 O ATOM 73 N LYS 40 40.373 30.695 3.299 1.00 0.00 N ATOM 74 CA LYS 40 41.321 31.332 2.409 1.00 0.00 C ATOM 75 C LYS 40 41.663 30.318 1.321 1.00 0.00 C ATOM 76 O LYS 40 41.092 30.407 0.213 1.00 0.00 O ATOM 77 N ILE 41 42.498 29.321 1.666 1.00 0.00 N ATOM 78 CA ILE 41 43.018 28.359 0.693 1.00 0.00 C ATOM 79 C ILE 41 41.961 27.584 -0.080 1.00 0.00 C ATOM 80 O ILE 41 42.094 27.449 -1.259 1.00 0.00 O ATOM 81 N MET 42 40.877 27.145 0.541 1.00 0.00 N ATOM 82 CA MET 42 39.798 26.398 -0.172 1.00 0.00 C ATOM 83 C MET 42 39.096 27.239 -1.225 1.00 0.00 C ATOM 84 O MET 42 38.221 26.744 -1.945 1.00 0.00 O ATOM 85 N GLY 43 39.466 28.519 -1.259 1.00 0.00 N ATOM 86 CA GLY 43 38.697 29.594 -1.926 1.00 0.00 C ATOM 87 C GLY 43 37.167 29.471 -1.750 1.00 0.00 C ATOM 88 O GLY 43 36.403 29.593 -2.720 1.00 0.00 O ATOM 89 N TYR 44 36.750 29.205 -0.505 1.00 0.00 N ATOM 90 CA TYR 44 35.324 29.115 -0.144 1.00 0.00 C ATOM 91 C TYR 44 35.053 30.067 1.012 1.00 0.00 C ATOM 92 O TYR 44 35.891 30.229 1.927 1.00 0.00 O ATOM 93 N GLU 45 33.875 30.689 0.966 1.00 0.00 N ATOM 94 CA GLU 45 33.459 31.588 2.025 1.00 0.00 C ATOM 95 C GLU 45 32.891 30.792 3.190 1.00 0.00 C ATOM 96 O GLU 45 32.151 29.834 2.969 1.00 0.00 O ATOM 97 N ASP 46 33.235 31.220 4.413 1.00 0.00 N ATOM 98 CA ASP 46 32.752 30.645 5.679 1.00 0.00 C ATOM 99 C ASP 46 31.260 30.257 5.728 1.00 0.00 C ATOM 100 O ASP 46 30.864 29.334 6.429 1.00 0.00 O ATOM 101 N HIS 47 30.432 30.939 4.964 1.00 0.00 N ATOM 102 CA HIS 47 29.007 30.644 4.995 1.00 0.00 C ATOM 103 C HIS 47 28.684 29.563 3.975 1.00 0.00 C ATOM 104 O HIS 47 27.602 28.985 3.992 1.00 0.00 O ATOM 105 N GLU 48 29.602 29.300 3.061 1.00 0.00 N ATOM 106 CA GLU 48 29.395 28.220 2.108 1.00 0.00 C ATOM 107 C GLU 48 29.982 26.942 2.689 1.00 0.00 C ATOM 108 O GLU 48 29.759 25.829 2.214 1.00 0.00 O ATOM 109 N LEU 49 30.761 27.125 3.725 1.00 0.00 N ATOM 110 CA LEU 49 31.393 26.017 4.361 1.00 0.00 C ATOM 111 C LEU 49 30.512 25.522 5.512 1.00 0.00 C ATOM 112 O LEU 49 29.989 24.417 5.448 1.00 0.00 O ATOM 113 N PRO 50 30.358 26.348 6.547 1.00 0.00 N ATOM 114 CA PRO 50 29.512 26.004 7.687 1.00 0.00 C ATOM 115 C PRO 50 28.138 25.413 7.253 1.00 0.00 C ATOM 116 O PRO 50 27.404 25.975 6.425 1.00 0.00 O ATOM 117 N ASP 51 27.853 24.221 7.770 1.00 0.00 N ATOM 118 CA ASP 51 26.623 23.510 7.445 1.00 0.00 C ATOM 119 C ASP 51 26.675 22.554 6.277 1.00 0.00 C ATOM 120 O ASP 51 25.692 21.890 5.967 1.00 0.00 O ATOM 121 N GLU 52 27.833 22.500 5.639 1.00 0.00 N ATOM 122 CA GLU 52 28.096 21.666 4.522 1.00 0.00 C ATOM 123 C GLU 52 28.756 20.384 4.991 1.00 0.00 C ATOM 124 O GLU 52 29.345 20.357 6.094 1.00 0.00 O ATOM 125 N ILE 53 28.649 19.323 4.182 1.00 0.00 N ATOM 126 CA ILE 53 29.358 18.061 4.447 1.00 0.00 C ATOM 127 C ILE 53 30.820 18.345 4.116 1.00 0.00 C ATOM 128 O ILE 53 31.112 18.999 3.078 1.00 0.00 O ATOM 129 N HIS 56 31.739 17.809 4.917 1.00 0.00 N ATOM 130 CA HIS 56 33.181 18.041 4.654 1.00 0.00 C ATOM 131 C HIS 56 33.576 17.388 3.338 1.00 0.00 C ATOM 132 O HIS 56 34.618 17.711 2.730 1.00 0.00 O ATOM 133 N ARG 57 32.717 16.482 2.876 1.00 0.00 N ATOM 134 CA ARG 57 32.806 16.071 1.474 1.00 0.00 C ATOM 135 C ARG 57 32.788 17.251 0.456 1.00 0.00 C ATOM 136 O ARG 57 33.237 17.099 -0.654 1.00 0.00 O ATOM 137 N GLU 58 32.312 18.435 0.839 1.00 0.00 N ATOM 138 CA GLU 58 32.306 19.561 -0.095 1.00 0.00 C ATOM 139 C GLU 58 33.656 19.667 -0.813 1.00 0.00 C ATOM 140 O GLU 58 33.680 19.697 -2.053 1.00 0.00 O ATOM 141 N SER 59 34.781 19.658 -0.073 1.00 0.00 N ATOM 142 CA SER 59 36.142 19.746 -0.638 1.00 0.00 C ATOM 143 C SER 59 36.721 18.426 -1.143 1.00 0.00 C ATOM 144 O SER 59 37.884 18.417 -1.610 1.00 0.00 O ATOM 145 N ILE 60 35.960 17.326 -1.098 1.00 0.00 N ATOM 146 CA ILE 60 36.540 16.046 -1.549 1.00 0.00 C ATOM 147 C ILE 60 37.028 16.180 -3.017 1.00 0.00 C ATOM 148 O ILE 60 36.663 17.110 -3.712 1.00 0.00 O ATOM 149 N HIS 61 37.877 15.306 -3.520 1.00 0.00 N ATOM 150 CA HIS 61 38.373 15.536 -4.888 1.00 0.00 C ATOM 151 C HIS 61 38.270 14.305 -5.821 1.00 0.00 C ATOM 152 O HIS 61 38.375 14.428 -7.033 1.00 0.00 O ATOM 153 N PRO 62 38.058 13.122 -5.266 1.00 0.00 N ATOM 154 CA PRO 62 37.929 11.962 -6.084 1.00 0.00 C ATOM 155 C PRO 62 39.294 11.316 -6.105 1.00 0.00 C ATOM 156 O PRO 62 39.380 10.101 -6.323 1.00 0.00 O ATOM 157 N ASP 63 40.344 12.107 -5.831 1.00 0.00 N ATOM 158 CA ASP 63 41.697 11.616 -5.805 1.00 0.00 C ATOM 159 C ASP 63 41.896 10.365 -4.947 1.00 0.00 C ATOM 160 O ASP 63 42.532 9.422 -5.412 1.00 0.00 O ATOM 161 N ASP 64 41.383 10.369 -3.704 1.00 0.00 N ATOM 162 CA ASP 64 41.583 9.254 -2.756 1.00 0.00 C ATOM 163 C ASP 64 40.567 8.114 -2.939 1.00 0.00 C ATOM 164 O ASP 64 39.380 8.367 -3.211 1.00 0.00 O ATOM 165 N ARG 65 41.027 6.866 -2.813 1.00 0.00 N ATOM 166 CA ARG 65 40.141 5.718 -2.854 1.00 0.00 C ATOM 167 C ARG 65 39.415 5.570 -1.531 1.00 0.00 C ATOM 168 O ARG 65 39.845 6.108 -0.516 1.00 0.00 O ATOM 169 N ALA 66 38.330 4.809 -1.551 1.00 0.00 N ATOM 170 CA ALA 66 37.385 4.717 -0.462 1.00 0.00 C ATOM 171 C ALA 66 38.028 4.101 0.774 1.00 0.00 C ATOM 172 O ALA 66 37.521 4.259 1.918 1.00 0.00 O ATOM 173 N ARG 67 39.122 3.366 0.575 1.00 0.00 N ATOM 174 CA ARG 67 39.741 2.682 1.738 1.00 0.00 C ATOM 175 C ARG 67 40.562 3.706 2.527 1.00 0.00 C ATOM 176 O ARG 67 40.617 3.662 3.758 1.00 0.00 O ATOM 177 N VAL 68 41.117 4.681 1.817 1.00 0.00 N ATOM 178 CA VAL 68 41.790 5.750 2.500 1.00 0.00 C ATOM 179 C VAL 68 40.818 6.492 3.387 1.00 0.00 C ATOM 180 O VAL 68 41.167 6.846 4.485 1.00 0.00 O ATOM 181 N LEU 69 39.598 6.723 2.904 1.00 0.00 N ATOM 182 CA LEU 69 38.580 7.464 3.658 1.00 0.00 C ATOM 183 C LEU 69 38.048 6.610 4.773 1.00 0.00 C ATOM 184 O LEU 69 37.901 7.078 5.901 1.00 0.00 O ATOM 185 N ALA 70 37.762 5.353 4.438 1.00 0.00 N ATOM 186 CA ALA 70 37.261 4.336 5.410 1.00 0.00 C ATOM 187 C ALA 70 38.224 4.071 6.565 1.00 0.00 C ATOM 188 O ALA 70 37.790 4.008 7.704 1.00 0.00 O ATOM 189 N ALA 71 39.522 3.941 6.293 1.00 0.00 N ATOM 190 CA ALA 71 40.530 3.881 7.387 1.00 0.00 C ATOM 191 C ALA 71 40.552 5.158 8.228 1.00 0.00 C ATOM 192 O ALA 71 40.623 5.074 9.434 1.00 0.00 O ATOM 193 N LEU 72 40.462 6.342 7.617 1.00 0.00 N ATOM 194 CA LEU 72 40.405 7.606 8.385 1.00 0.00 C ATOM 195 C LEU 72 39.252 7.631 9.455 1.00 0.00 C ATOM 196 O LEU 72 39.481 7.821 10.658 1.00 0.00 O ATOM 197 N LYS 73 38.038 7.307 8.997 1.00 0.00 N ATOM 198 CA LYS 73 36.819 7.327 9.787 1.00 0.00 C ATOM 199 C LYS 73 36.833 6.193 10.774 1.00 0.00 C ATOM 200 O LYS 73 36.295 6.314 11.905 1.00 0.00 O ATOM 201 N ALA 74 37.389 5.062 10.333 1.00 0.00 N ATOM 202 CA ALA 74 37.601 3.944 11.248 1.00 0.00 C ATOM 203 C ALA 74 38.595 4.247 12.333 1.00 0.00 C ATOM 204 O ALA 74 38.431 3.742 13.432 1.00 0.00 O ATOM 205 N HIS 75 39.562 5.125 12.077 1.00 0.00 N ATOM 206 CA HIS 75 40.449 5.486 13.171 1.00 0.00 C ATOM 207 C HIS 75 39.882 6.508 14.095 1.00 0.00 C ATOM 208 O HIS 75 39.923 6.321 15.258 1.00 0.00 O ATOM 209 N LEU 76 39.331 7.599 13.577 1.00 0.00 N ATOM 210 CA LEU 76 38.813 8.709 14.435 1.00 0.00 C ATOM 211 C LEU 76 37.573 8.367 15.276 1.00 0.00 C ATOM 212 O LEU 76 37.383 8.881 16.383 1.00 0.00 O ATOM 213 N GLU 77 36.715 7.511 14.732 1.00 0.00 N ATOM 214 CA GLU 77 35.460 7.167 15.407 1.00 0.00 C ATOM 215 C GLU 77 35.680 6.213 16.581 1.00 0.00 C ATOM 216 O GLU 77 34.855 6.140 17.514 1.00 0.00 O ATOM 217 N HIS 78 36.778 5.464 16.544 1.00 0.00 N ATOM 218 CA HIS 78 37.209 4.774 17.770 1.00 0.00 C ATOM 219 C HIS 78 38.068 5.655 18.734 1.00 0.00 C ATOM 220 O HIS 78 38.742 5.103 19.564 1.00 0.00 O ATOM 221 N ARG 79 38.022 6.993 18.649 1.00 0.00 N ATOM 222 CA ARG 79 38.659 7.837 19.655 1.00 0.00 C ATOM 223 C ARG 79 40.100 8.325 19.422 1.00 0.00 C ATOM 224 O ARG 79 40.446 9.444 19.878 1.00 0.00 O ATOM 225 N ASP 80 40.923 7.496 18.759 1.00 0.00 N ATOM 226 CA ASP 80 42.243 7.817 18.169 1.00 0.00 C ATOM 227 C ASP 80 42.438 9.016 17.214 1.00 0.00 C ATOM 228 O ASP 80 41.586 9.235 16.300 1.00 0.00 O ATOM 229 N THR 81 43.582 9.732 17.360 1.00 0.00 N ATOM 230 CA THR 81 44.024 10.791 16.418 1.00 0.00 C ATOM 231 C THR 81 44.330 10.146 15.089 1.00 0.00 C ATOM 232 O THR 81 44.826 9.019 15.102 1.00 0.00 O ATOM 233 N TYR 82 44.054 10.843 13.956 1.00 0.00 N ATOM 234 CA TYR 82 44.430 10.367 12.571 1.00 0.00 C ATOM 235 C TYR 82 45.365 11.368 11.898 1.00 0.00 C ATOM 236 O TYR 82 45.237 12.600 12.093 1.00 0.00 O ATOM 237 N ASP 83 46.307 10.848 11.098 1.00 0.00 N ATOM 238 CA ASP 83 47.154 11.751 10.332 1.00 0.00 C ATOM 239 C ASP 83 47.350 11.372 8.883 1.00 0.00 C ATOM 240 O ASP 83 47.491 10.202 8.510 1.00 0.00 O ATOM 241 N VAL 84 47.329 12.386 8.048 1.00 0.00 N ATOM 242 CA VAL 84 47.404 12.108 6.634 1.00 0.00 C ATOM 243 C VAL 84 47.400 13.349 5.802 1.00 0.00 C ATOM 244 O VAL 84 47.221 14.468 6.293 1.00 0.00 O ATOM 245 N GLU 85 47.638 13.123 4.525 1.00 0.00 N ATOM 246 CA GLU 85 47.514 14.153 3.486 1.00 0.00 C ATOM 247 C GLU 85 46.165 14.028 2.811 1.00 0.00 C ATOM 248 O GLU 85 45.557 12.954 2.771 1.00 0.00 O ATOM 249 N TYR 86 45.720 15.154 2.292 1.00 0.00 N ATOM 250 CA TYR 86 44.496 15.223 1.526 1.00 0.00 C ATOM 251 C TYR 86 44.720 16.032 0.276 1.00 0.00 C ATOM 252 O TYR 86 45.236 17.152 0.315 1.00 0.00 O ATOM 253 N ARG 87 44.344 15.451 -0.845 1.00 0.00 N ATOM 254 CA ARG 87 44.251 16.232 -2.041 1.00 0.00 C ATOM 255 C ARG 87 42.787 16.682 -2.138 1.00 0.00 C ATOM 256 O ARG 87 41.863 15.846 -2.259 1.00 0.00 O ATOM 257 N VAL 88 42.583 18.000 -2.056 1.00 0.00 N ATOM 258 CA VAL 88 41.217 18.554 -2.022 1.00 0.00 C ATOM 259 C VAL 88 40.889 19.411 -3.256 1.00 0.00 C ATOM 260 O VAL 88 41.788 19.768 -3.977 1.00 0.00 O ATOM 261 N ARG 89 39.611 19.740 -3.454 1.00 0.00 N ATOM 262 CA ARG 89 39.086 20.519 -4.609 1.00 0.00 C ATOM 263 C ARG 89 38.644 21.906 -4.153 1.00 0.00 C ATOM 264 O ARG 89 37.810 22.023 -3.237 1.00 0.00 O ATOM 265 N THR 90 39.181 22.950 -4.810 1.00 0.00 N ATOM 266 CA THR 90 38.985 24.372 -4.441 1.00 0.00 C ATOM 267 C THR 90 37.640 25.124 -4.713 1.00 0.00 C ATOM 268 O THR 90 37.372 26.146 -4.048 1.00 0.00 O ATOM 269 N ARG 91 36.794 24.638 -5.626 1.00 0.00 N ATOM 270 CA ARG 91 35.489 25.300 -6.020 1.00 0.00 C ATOM 271 C ARG 91 35.462 25.574 -7.502 1.00 0.00 C ATOM 272 O ARG 91 34.519 25.180 -8.213 1.00 0.00 O ATOM 273 N SER 92 36.497 26.301 -7.936 1.00 0.00 N ATOM 274 CA SER 92 36.785 26.513 -9.336 1.00 0.00 C ATOM 275 C SER 92 37.357 25.213 -9.904 1.00 0.00 C ATOM 276 O SER 92 37.930 25.172 -11.020 1.00 0.00 O ATOM 277 N GLY 93 37.184 24.155 -9.110 1.00 0.00 N ATOM 278 CA GLY 93 37.553 22.784 -9.471 1.00 0.00 C ATOM 279 C GLY 93 39.022 22.432 -9.393 1.00 0.00 C ATOM 280 O GLY 93 39.380 21.282 -9.663 1.00 0.00 O ATOM 281 N ASP 94 39.877 23.402 -9.044 1.00 0.00 N ATOM 282 CA ASP 94 41.340 23.158 -8.972 1.00 0.00 C ATOM 283 C ASP 94 41.778 22.399 -7.700 1.00 0.00 C ATOM 284 O ASP 94 41.083 22.432 -6.652 1.00 0.00 O ATOM 285 N PHE 95 42.939 21.743 -7.766 1.00 0.00 N ATOM 286 CA PHE 95 43.368 20.892 -6.646 1.00 0.00 C ATOM 287 C PHE 95 44.408 21.512 -5.680 1.00 0.00 C ATOM 288 O PHE 95 45.326 22.223 -6.095 1.00 0.00 O ATOM 289 N ARG 96 44.216 21.293 -4.380 1.00 0.00 N ATOM 290 CA ARG 96 45.252 21.596 -3.414 1.00 0.00 C ATOM 291 C ARG 96 45.567 20.441 -2.499 1.00 0.00 C ATOM 292 O ARG 96 44.903 19.386 -2.526 1.00 0.00 O ATOM 293 N TRP 97 46.616 20.634 -1.701 1.00 0.00 N ATOM 294 CA TRP 97 47.064 19.594 -0.804 1.00 0.00 C ATOM 295 C TRP 97 47.154 20.087 0.595 1.00 0.00 C ATOM 296 O TRP 97 47.453 21.232 0.877 1.00 0.00 O ATOM 297 N ILE 98 46.882 19.186 1.506 1.00 0.00 N ATOM 298 CA ILE 98 46.858 19.581 2.867 1.00 0.00 C ATOM 299 C ILE 98 47.471 18.384 3.617 1.00 0.00 C ATOM 300 O ILE 98 47.457 17.255 3.106 1.00 0.00 O ATOM 301 N GLN 99 48.043 18.654 4.788 1.00 0.00 N ATOM 302 CA GLN 99 48.662 17.633 5.640 1.00 0.00 C ATOM 303 C GLN 99 47.894 17.794 6.956 1.00 0.00 C ATOM 304 O GLN 99 47.893 18.888 7.539 1.00 0.00 O ATOM 305 N SER 100 47.194 16.744 7.389 1.00 0.00 N ATOM 306 CA SER 100 46.132 16.879 8.392 1.00 0.00 C ATOM 307 C SER 100 46.405 16.033 9.568 1.00 0.00 C ATOM 308 O SER 100 46.963 14.956 9.468 1.00 0.00 O ATOM 309 N ARG 101 45.935 16.507 10.691 1.00 0.00 N ATOM 310 CA ARG 101 45.759 15.674 11.877 1.00 0.00 C ATOM 311 C ARG 101 44.299 15.918 12.251 1.00 0.00 C ATOM 312 O ARG 101 43.804 17.112 12.349 1.00 0.00 O ATOM 313 N GLY 102 43.591 14.811 12.377 1.00 0.00 N ATOM 314 CA GLY 102 42.186 14.849 12.878 1.00 0.00 C ATOM 315 C GLY 102 42.070 14.169 14.226 1.00 0.00 C ATOM 316 O GLY 102 42.467 12.994 14.424 1.00 0.00 O ATOM 317 N GLN 103 41.498 14.937 15.127 1.00 0.00 N ATOM 318 CA GLN 103 41.427 14.619 16.544 1.00 0.00 C ATOM 319 C GLN 103 39.974 14.574 16.977 1.00 0.00 C ATOM 320 O GLN 103 39.210 15.504 16.706 1.00 0.00 O ATOM 321 N ALA 104 39.599 13.545 17.711 1.00 0.00 N ATOM 322 CA ALA 104 38.255 13.582 18.270 1.00 0.00 C ATOM 323 C ALA 104 38.123 14.376 19.571 1.00 0.00 C ATOM 324 O ALA 104 38.996 14.379 20.382 1.00 0.00 O ATOM 325 N LEU 105 36.994 15.033 19.758 1.00 0.00 N ATOM 326 CA LEU 105 36.589 15.562 21.042 1.00 0.00 C ATOM 327 C LEU 105 35.486 14.663 21.669 1.00 0.00 C ATOM 328 O LEU 105 34.523 14.341 20.992 1.00 0.00 O ATOM 329 N TRP 106 35.653 14.294 22.963 1.00 0.00 N ATOM 330 CA TRP 106 34.788 13.371 23.728 1.00 0.00 C ATOM 331 C TRP 106 33.696 13.951 24.613 1.00 0.00 C ATOM 332 O TRP 106 33.697 15.151 24.865 1.00 0.00 O ATOM 333 N ASN 107 32.784 13.075 25.086 1.00 0.00 N ATOM 334 CA ASN 107 31.893 13.261 26.305 1.00 0.00 C ATOM 335 C ASN 107 32.712 13.266 27.622 1.00 0.00 C ATOM 336 O ASN 107 33.907 13.440 27.482 1.00 0.00 O ATOM 337 N SER 108 32.271 13.041 28.890 1.00 0.00 N ATOM 338 CA SER 108 31.284 12.109 29.438 1.00 0.00 C ATOM 339 C SER 108 31.524 10.834 28.650 1.00 0.00 C ATOM 340 O SER 108 32.559 10.741 27.905 1.00 0.00 O ATOM 341 N ALA 109 30.650 9.860 28.815 1.00 0.00 N ATOM 342 CA ALA 109 30.885 8.529 28.254 1.00 0.00 C ATOM 343 C ALA 109 32.020 8.637 27.241 1.00 0.00 C ATOM 344 O ALA 109 31.826 9.312 26.210 1.00 0.00 O ATOM 345 N GLY 110 33.206 8.082 27.473 1.00 0.00 N ATOM 346 CA GLY 110 34.341 8.506 26.588 1.00 0.00 C ATOM 347 C GLY 110 34.142 8.413 25.060 1.00 0.00 C ATOM 348 O GLY 110 34.963 7.834 24.359 1.00 0.00 O ATOM 349 N GLU 111 33.081 9.010 24.541 1.00 0.00 N ATOM 350 CA GLU 111 32.656 8.821 23.171 1.00 0.00 C ATOM 351 C GLU 111 32.918 10.078 22.359 1.00 0.00 C ATOM 352 O GLU 111 32.484 11.170 22.762 1.00 0.00 O ATOM 353 N PRO 112 33.587 9.934 21.192 1.00 0.00 N ATOM 354 CA PRO 112 33.717 11.066 20.261 1.00 0.00 C ATOM 355 C PRO 112 32.366 11.715 19.979 1.00 0.00 C ATOM 356 O PRO 112 31.345 11.025 19.770 1.00 0.00 O ATOM 357 N TYR 113 32.405 13.038 19.978 1.00 0.00 N ATOM 358 CA TYR 113 31.265 13.886 19.869 1.00 0.00 C ATOM 359 C TYR 113 31.480 14.962 18.760 1.00 0.00 C ATOM 360 O TYR 113 30.517 15.301 18.037 1.00 0.00 O ATOM 361 N ARG 114 32.724 15.478 18.613 1.00 0.00 N ATOM 362 CA ARG 114 33.102 16.323 17.478 1.00 0.00 C ATOM 363 C ARG 114 34.485 15.975 17.025 1.00 0.00 C ATOM 364 O ARG 114 35.179 15.187 17.652 1.00 0.00 O ATOM 365 N MET 115 34.881 16.561 15.906 1.00 0.00 N ATOM 366 CA MET 115 36.139 16.251 15.227 1.00 0.00 C ATOM 367 C MET 115 36.842 17.513 14.866 1.00 0.00 C ATOM 368 O MET 115 36.213 18.394 14.288 1.00 0.00 O ATOM 369 N VAL 116 38.123 17.630 15.250 1.00 0.00 N ATOM 370 CA VAL 116 38.888 18.832 14.918 1.00 0.00 C ATOM 371 C VAL 116 39.973 18.424 13.948 1.00 0.00 C ATOM 372 O VAL 116 40.653 17.378 14.118 1.00 0.00 O ATOM 373 N GLY 117 40.047 19.196 12.865 1.00 0.00 N ATOM 374 CA GLY 117 41.041 18.965 11.831 1.00 0.00 C ATOM 375 C GLY 117 41.927 20.187 11.687 1.00 0.00 C ATOM 376 O GLY 117 41.452 21.283 11.376 1.00 0.00 O ATOM 377 N TRP 118 43.208 19.958 12.002 1.00 0.00 N ATOM 378 CA TRP 118 44.287 20.945 11.923 1.00 0.00 C ATOM 379 C TRP 118 45.224 20.452 10.824 1.00 0.00 C ATOM 380 O TRP 118 45.731 19.302 10.887 1.00 0.00 O ATOM 381 N ILE 119 45.418 21.331 9.835 1.00 0.00 N ATOM 382 CA ILE 119 46.063 21.019 8.537 1.00 0.00 C ATOM 383 C ILE 119 47.013 22.124 8.054 1.00 0.00 C ATOM 384 O ILE 119 46.631 23.332 8.017 1.00 0.00 O ATOM 385 N MET 120 48.200 21.783 7.591 1.00 0.00 N ATOM 386 CA MET 120 48.810 22.839 6.769 1.00 0.00 C ATOM 387 C MET 120 48.722 22.574 5.269 1.00 0.00 C ATOM 388 O MET 120 48.828 21.431 4.784 1.00 0.00 O ATOM 389 N ASP 121 48.446 23.670 4.585 1.00 0.00 N ATOM 390 CA ASP 121 48.540 23.775 3.162 1.00 0.00 C ATOM 391 C ASP 121 49.931 23.364 2.672 1.00 0.00 C ATOM 392 O ASP 121 50.941 23.979 3.042 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 384 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 50.98 76.9 182 94.3 193 ARMSMC SECONDARY STRUCTURE . . 43.51 83.0 106 95.5 111 ARMSMC SURFACE . . . . . . . . 56.35 70.8 120 93.0 129 ARMSMC BURIED . . . . . . . . 38.50 88.7 62 96.9 64 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 74 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 71 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 42 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 51 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 44 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 3 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 2 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.84 (Number of atoms: 96) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.84 96 97.0 99 CRMSCA CRN = ALL/NP . . . . . 0.0296 CRMSCA SECONDARY STRUCTURE . . 2.04 56 98.2 57 CRMSCA SURFACE . . . . . . . . 3.20 64 97.0 66 CRMSCA BURIED . . . . . . . . 1.90 32 97.0 33 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.81 384 78.7 488 CRMSMC SECONDARY STRUCTURE . . 1.94 224 79.4 282 CRMSMC SURFACE . . . . . . . . 3.17 256 78.5 326 CRMSMC BURIED . . . . . . . . 1.92 128 79.0 162 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 427 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 377 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 279 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 297 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 130 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.81 384 46.7 823 CRMSALL SECONDARY STRUCTURE . . 1.94 224 44.2 507 CRMSALL SURFACE . . . . . . . . 3.17 256 45.6 561 CRMSALL BURIED . . . . . . . . 1.92 128 48.9 262 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.367 1.000 0.500 96 97.0 99 ERRCA SECONDARY STRUCTURE . . 1.788 1.000 0.500 56 98.2 57 ERRCA SURFACE . . . . . . . . 2.727 1.000 0.500 64 97.0 66 ERRCA BURIED . . . . . . . . 1.646 1.000 0.500 32 97.0 33 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.347 1.000 0.500 384 78.7 488 ERRMC SECONDARY STRUCTURE . . 1.721 1.000 0.500 224 79.4 282 ERRMC SURFACE . . . . . . . . 2.675 1.000 0.500 256 78.5 326 ERRMC BURIED . . . . . . . . 1.690 1.000 0.500 128 79.0 162 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 427 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 377 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 279 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 297 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 130 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.347 1.000 0.500 384 46.7 823 ERRALL SECONDARY STRUCTURE . . 1.721 1.000 0.500 224 44.2 507 ERRALL SURFACE . . . . . . . . 2.675 1.000 0.500 256 45.6 561 ERRALL BURIED . . . . . . . . 1.690 1.000 0.500 128 48.9 262 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 48 69 90 96 96 99 DISTCA CA (P) 16.16 48.48 69.70 90.91 96.97 99 DISTCA CA (RMS) 0.71 1.20 1.71 2.45 2.84 DISTCA ALL (N) 62 202 279 354 384 384 823 DISTALL ALL (P) 7.53 24.54 33.90 43.01 46.66 823 DISTALL ALL (RMS) 0.75 1.25 1.69 2.35 2.81 DISTALL END of the results output