####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 103 ( 412), selected 103 , name T0523AL396_1-D1 # Molecule2: number of CA atoms 111 ( 868), selected 103 , name T0523-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0523AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 95 20 - 114 4.28 6.78 LCS_AVERAGE: 80.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 21 - 52 1.88 6.88 LONGEST_CONTINUOUS_SEGMENT: 32 22 - 53 1.97 6.92 LCS_AVERAGE: 21.64 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 22 - 46 0.97 7.12 LONGEST_CONTINUOUS_SEGMENT: 25 23 - 47 0.95 7.22 LCS_AVERAGE: 14.90 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 103 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT D 4 D 4 3 3 8 0 3 3 3 3 4 4 4 4 7 8 8 12 14 19 21 31 34 41 44 LCS_GDT Y 5 Y 5 3 3 8 0 3 3 3 3 4 4 7 7 10 14 18 20 22 26 33 39 47 60 68 LCS_GDT K 6 K 6 3 3 8 1 3 3 3 4 4 6 7 7 8 27 38 46 51 71 76 86 88 89 89 LCS_GDT T 7 T 7 3 3 8 3 3 3 3 4 4 6 7 7 8 9 10 12 14 15 47 52 53 68 73 LCS_GDT A 8 A 8 4 4 8 3 4 4 4 4 4 6 7 7 19 21 34 45 48 51 58 62 66 77 79 LCS_GDT F 9 F 9 4 4 8 3 4 4 4 4 4 11 17 19 22 22 38 44 47 52 59 62 71 77 85 LCS_GDT H 10 H 10 4 4 80 3 4 4 4 4 4 6 17 17 22 22 26 28 31 35 38 42 52 69 76 LCS_GDT L 11 L 11 4 4 82 3 4 4 4 4 4 6 10 12 13 16 20 22 23 26 29 33 44 52 57 LCS_GDT R 20 R 20 3 28 95 3 3 3 6 19 33 45 63 72 74 80 82 85 88 88 88 89 91 92 94 LCS_GDT D 21 D 21 3 32 95 3 25 31 45 54 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 22 R 22 25 32 95 6 11 21 40 53 61 67 72 75 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT V 23 V 23 25 32 95 6 12 29 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 24 I 24 25 32 95 6 24 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT E 25 E 25 25 32 95 6 30 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 26 D 26 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT C 27 C 27 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT N 28 N 28 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 29 D 29 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT E 30 E 30 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT L 31 L 31 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 32 A 32 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 33 A 33 25 32 95 13 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 34 I 34 25 32 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT F 35 F 35 25 32 95 9 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 36 R 36 25 32 95 6 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT C 37 C 37 25 32 95 5 21 40 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 38 A 38 25 32 95 6 25 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 39 R 39 25 32 95 8 25 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 40 A 40 25 32 95 6 25 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 41 D 41 25 32 95 6 23 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT L 42 L 42 25 32 95 6 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 43 I 43 25 32 95 9 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT G 44 G 44 25 32 95 6 30 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 45 R 45 25 32 95 4 23 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT S 46 S 46 25 32 95 6 23 40 50 57 61 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT F 47 F 47 25 32 95 4 10 19 34 49 60 65 71 75 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT E 48 E 48 20 32 95 4 6 9 27 33 49 60 69 73 76 80 83 85 88 88 88 89 91 92 94 LCS_GDT V 49 V 49 20 32 95 3 3 27 42 56 60 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT L 50 L 50 3 32 95 3 4 9 32 52 61 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT Y 51 Y 51 3 32 95 3 16 29 36 49 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT P 52 P 52 5 32 95 4 8 35 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT S 53 S 53 5 32 95 4 7 31 40 52 60 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT S 54 S 54 5 18 95 4 5 5 13 20 25 34 50 59 64 73 81 84 88 88 88 88 90 90 94 LCS_GDT D 55 D 55 5 18 95 4 5 5 10 12 20 25 34 42 61 67 81 84 88 88 88 88 90 90 94 LCS_GDT E 56 E 56 5 18 95 4 7 20 34 46 57 63 71 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT F 57 F 57 12 18 95 6 10 11 15 19 23 32 37 52 63 72 78 84 88 88 88 88 91 92 94 LCS_GDT E 58 E 58 14 18 95 6 10 14 27 41 51 61 70 73 76 80 82 85 88 88 88 89 91 92 94 LCS_GDT R 59 R 59 14 18 95 6 10 14 41 51 58 66 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 60 I 60 14 18 95 6 13 32 43 54 59 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT G 61 G 61 14 18 95 6 11 14 27 39 56 66 71 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT E 62 E 62 14 18 95 6 11 20 41 55 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 63 R 63 14 18 95 6 14 35 50 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 64 I 64 14 18 95 6 11 14 35 49 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT S 65 S 65 14 30 95 7 11 14 19 36 50 57 69 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT P 66 P 66 14 30 95 7 11 14 25 40 50 59 69 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT V 67 V 67 14 30 95 7 11 14 17 34 49 55 65 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT M 68 M 68 14 30 95 7 11 14 17 33 48 55 64 70 77 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 69 I 69 14 30 95 7 11 14 17 33 48 55 64 70 75 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 70 A 70 14 30 95 7 11 14 26 34 47 55 62 69 75 81 83 85 88 88 88 89 91 92 94 LCS_GDT H 71 H 71 14 30 95 7 11 14 17 20 35 41 56 66 71 79 83 85 88 88 88 89 91 92 94 LCS_GDT G 72 G 72 24 30 95 3 6 18 33 52 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT S 73 S 73 24 30 95 14 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT Y 74 Y 74 24 30 95 15 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 75 A 75 24 30 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 76 D 76 24 30 95 10 25 40 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 77 D 77 24 30 95 11 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 78 R 78 24 30 95 11 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT I 79 I 79 24 30 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT M 80 M 80 24 30 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT K 81 K 81 24 30 95 9 30 41 50 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 82 R 82 24 30 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 83 A 83 24 30 95 9 31 42 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT G 84 G 84 24 30 95 6 25 38 47 55 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT G 85 G 85 24 30 95 10 28 39 49 56 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT E 86 E 86 24 30 95 11 30 40 50 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT L 87 L 87 24 30 95 10 30 40 50 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT F 88 F 88 24 30 95 11 30 42 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT W 89 W 89 24 30 95 14 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT C 90 C 90 24 30 95 13 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT H 91 H 91 24 30 95 11 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT V 92 V 92 24 30 95 11 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT T 93 T 93 24 30 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT G 94 G 94 24 30 95 9 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT R 95 R 95 24 30 95 4 22 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT A 96 A 96 24 29 95 6 23 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT L 97 L 97 12 29 95 6 17 33 51 57 61 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 98 D 98 4 27 95 4 4 4 23 32 43 54 61 67 70 75 81 84 85 86 88 89 91 92 94 LCS_GDT R 99 R 99 4 5 95 4 4 4 5 7 8 26 28 35 36 40 46 69 74 78 81 86 90 92 93 LCS_GDT T 100 T 100 4 5 95 4 4 4 5 15 20 26 30 45 58 65 73 75 77 84 87 89 91 92 94 LCS_GDT A 101 A 101 4 5 95 4 4 4 4 5 9 15 41 52 64 69 73 76 79 84 87 89 91 92 94 LCS_GDT P 102 P 102 4 6 95 3 4 4 5 8 11 26 28 37 49 60 73 75 77 84 87 89 91 92 94 LCS_GDT L 103 L 103 4 7 95 3 4 5 5 15 20 37 47 60 64 70 73 76 80 84 88 89 91 92 94 LCS_GDT A 104 A 104 4 11 95 3 4 5 16 32 43 54 60 62 69 73 78 84 85 86 88 89 91 92 94 LCS_GDT A 105 A 105 10 11 95 5 20 31 51 57 61 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT G 106 G 106 10 11 95 10 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT V 107 V 107 10 11 95 10 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT W 108 W 108 10 11 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT T 109 T 109 10 11 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT F 110 F 110 10 11 95 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT E 111 E 111 10 11 95 11 31 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT D 112 D 112 10 11 95 7 24 38 50 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT L 113 L 113 10 11 95 7 19 29 44 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_GDT S 114 S 114 10 11 95 3 8 27 38 49 61 67 72 76 78 81 83 85 88 88 88 89 91 92 94 LCS_AVERAGE LCS_A: 39.10 ( 14.90 21.64 80.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 32 43 51 57 62 67 72 76 78 81 83 85 88 88 88 89 91 92 94 GDT PERCENT_AT 14.41 28.83 38.74 45.95 51.35 55.86 60.36 64.86 68.47 70.27 72.97 74.77 76.58 79.28 79.28 79.28 80.18 81.98 82.88 84.68 GDT RMS_LOCAL 0.37 0.66 0.92 1.19 1.34 1.57 1.76 2.00 2.28 2.35 2.63 2.80 2.95 3.33 3.33 3.33 3.55 3.72 3.88 4.12 GDT RMS_ALL_AT 6.74 6.74 6.77 6.83 6.81 6.70 6.74 6.72 6.72 6.72 6.73 6.73 6.68 6.67 6.67 6.67 6.78 6.76 6.79 6.75 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA D 4 D 4 16.477 4 0.032 0.032 16.542 0.000 0.000 LGA Y 5 Y 5 13.759 8 0.654 0.654 14.944 0.000 0.000 LGA K 6 K 6 11.861 5 0.590 0.590 13.371 0.000 0.000 LGA T 7 T 7 17.686 3 0.616 0.616 17.794 0.000 0.000 LGA A 8 A 8 19.107 1 0.580 0.580 20.426 0.000 0.000 LGA F 9 F 9 18.033 7 0.128 0.128 21.003 0.000 0.000 LGA H 10 H 10 22.558 6 0.289 0.289 25.297 0.000 0.000 LGA L 11 L 11 26.461 4 0.689 0.689 27.413 0.000 0.000 LGA R 20 R 20 7.095 7 0.643 0.643 7.740 16.190 5.887 LGA D 21 D 21 3.094 4 0.214 0.214 4.316 60.357 30.179 LGA R 22 R 22 3.943 7 0.133 0.133 4.177 43.452 15.801 LGA V 23 V 23 2.757 3 0.034 0.034 3.089 59.167 33.810 LGA I 24 I 24 1.656 4 0.020 0.020 1.983 72.857 36.429 LGA E 25 E 25 1.498 5 0.149 0.149 1.793 79.286 35.238 LGA D 26 D 26 0.480 4 0.066 0.066 0.596 97.619 48.810 LGA C 27 C 27 0.599 2 0.165 0.165 1.054 90.595 60.397 LGA N 28 N 28 0.022 4 0.040 0.040 0.233 100.000 50.000 LGA D 29 D 29 0.298 4 0.031 0.031 0.298 100.000 50.000 LGA E 30 E 30 0.205 5 0.027 0.027 0.299 100.000 44.444 LGA L 31 L 31 0.215 4 0.032 0.032 0.370 100.000 50.000 LGA A 32 A 32 0.258 1 0.018 0.018 0.321 100.000 80.000 LGA A 33 A 33 0.545 1 0.087 0.087 0.545 97.619 78.095 LGA I 34 I 34 0.339 4 0.036 0.036 0.389 100.000 50.000 LGA F 35 F 35 0.604 7 0.137 0.137 1.123 90.595 32.944 LGA R 36 R 36 1.142 7 0.196 0.196 1.432 83.690 30.433 LGA C 37 C 37 2.360 2 0.150 0.150 2.621 62.857 41.905 LGA A 38 A 38 1.730 1 0.020 0.020 1.893 72.857 58.286 LGA R 39 R 39 1.558 7 0.042 0.042 1.608 72.857 26.494 LGA A 40 A 40 1.682 1 0.026 0.026 1.682 72.857 58.286 LGA D 41 D 41 1.747 4 0.109 0.109 1.787 72.857 36.429 LGA L 42 L 42 0.936 4 0.095 0.095 1.141 85.952 42.976 LGA I 43 I 43 0.885 4 0.078 0.078 1.386 85.952 42.976 LGA G 44 G 44 1.152 0 0.056 0.056 1.810 79.405 79.405 LGA R 45 R 45 2.036 7 0.083 0.083 2.063 68.810 25.022 LGA S 46 S 46 2.609 2 0.066 0.066 3.232 55.476 36.984 LGA F 47 F 47 4.111 7 0.102 0.102 5.584 35.000 12.727 LGA E 48 E 48 5.288 5 0.136 0.136 5.434 27.500 12.222 LGA V 49 V 49 3.263 3 0.024 0.024 3.263 57.381 32.789 LGA L 50 L 50 3.418 4 0.038 0.038 4.496 52.500 26.250 LGA Y 51 Y 51 3.394 8 0.667 0.667 3.394 59.167 19.722 LGA P 52 P 52 2.275 3 0.631 0.631 2.617 64.881 37.075 LGA S 53 S 53 3.985 2 0.123 0.123 5.705 38.929 25.952 LGA S 54 S 54 9.868 2 0.080 0.080 10.411 1.905 1.270 LGA D 55 D 55 10.525 4 0.129 0.129 10.525 1.071 0.536 LGA E 56 E 56 5.001 5 0.577 0.577 6.761 21.786 9.683 LGA F 57 F 57 8.204 7 0.568 0.568 8.204 10.357 3.766 LGA E 58 E 58 6.145 5 0.095 0.095 7.046 23.929 10.635 LGA R 59 R 59 4.179 7 0.057 0.057 4.993 40.476 14.719 LGA I 60 I 60 3.640 4 0.033 0.033 3.968 45.000 22.500 LGA G 61 G 61 4.546 0 0.015 0.015 4.546 37.262 37.262 LGA E 62 E 62 2.833 5 0.051 0.051 3.284 55.476 24.656 LGA R 63 R 63 1.861 7 0.047 0.047 3.143 65.119 23.680 LGA I 64 I 64 3.306 4 0.040 0.040 5.129 42.619 21.310 LGA S 65 S 65 5.310 2 0.067 0.067 6.054 26.667 17.778 LGA P 66 P 66 5.259 3 0.098 0.098 6.444 22.738 12.993 LGA V 67 V 67 5.762 3 0.022 0.022 6.841 19.524 11.156 LGA M 68 M 68 6.739 4 0.037 0.037 8.038 11.310 5.655 LGA I 69 I 69 7.323 4 0.048 0.048 8.412 8.810 4.405 LGA A 70 A 70 7.716 1 0.300 0.300 7.850 7.857 6.286 LGA H 71 H 71 8.606 6 0.333 0.333 8.606 10.476 4.190 LGA G 72 G 72 3.633 0 0.629 0.629 4.827 40.476 40.476 LGA S 73 S 73 0.868 2 0.186 0.186 1.580 88.452 58.968 LGA Y 74 Y 74 0.382 8 0.044 0.044 1.381 90.595 30.198 LGA A 75 A 75 0.557 1 0.077 0.077 0.873 92.857 74.286 LGA D 76 D 76 2.058 4 0.192 0.192 2.472 68.929 34.464 LGA D 77 D 77 1.496 4 0.115 0.115 1.762 79.286 39.643 LGA R 78 R 78 1.300 7 0.077 0.077 1.300 85.952 31.255 LGA I 79 I 79 0.452 4 0.069 0.069 1.128 90.595 45.298 LGA M 80 M 80 0.685 4 0.095 0.095 1.002 90.595 45.298 LGA K 81 K 81 1.273 5 0.033 0.033 1.273 81.429 36.190 LGA R 82 R 82 0.551 7 0.077 0.077 0.805 90.476 32.900 LGA A 83 A 83 0.965 1 0.669 0.669 2.348 81.786 65.429 LGA G 84 G 84 2.696 0 0.115 0.115 2.965 57.143 57.143 LGA G 85 G 85 1.999 0 0.091 0.091 1.999 72.857 72.857 LGA E 86 E 86 1.620 5 0.070 0.070 1.706 79.405 35.291 LGA L 87 L 87 1.507 4 0.022 0.022 1.763 75.000 37.500 LGA F 88 F 88 0.823 7 0.051 0.051 0.945 95.238 34.632 LGA W 89 W 89 0.571 10 0.101 0.101 1.399 90.595 25.884 LGA C 90 C 90 0.740 2 0.057 0.057 1.010 88.214 58.810 LGA H 91 H 91 1.289 6 0.081 0.081 1.289 81.429 32.571 LGA V 92 V 92 1.116 3 0.052 0.052 1.307 83.690 47.823 LGA T 93 T 93 0.415 3 0.239 0.239 0.656 95.238 54.422 LGA G 94 G 94 1.016 0 0.191 0.191 1.016 88.214 88.214 LGA R 95 R 95 1.644 7 0.109 0.109 1.644 75.000 27.273 LGA A 96 A 96 2.036 1 0.019 0.019 2.921 62.976 50.381 LGA L 97 L 97 3.155 4 0.595 0.595 3.293 51.786 25.893 LGA D 98 D 98 8.061 4 0.267 0.267 10.186 5.595 2.798 LGA R 99 R 99 13.134 7 0.082 0.082 14.299 0.000 0.000 LGA T 100 T 100 12.419 3 0.017 0.017 12.419 0.000 0.000 LGA A 101 A 101 10.601 1 0.327 0.327 10.853 0.833 0.667 LGA P 102 P 102 10.719 3 0.674 0.674 11.229 0.000 0.000 LGA L 103 L 103 9.623 4 0.496 0.496 9.656 0.952 0.476 LGA A 104 A 104 8.153 1 0.440 0.440 8.657 10.476 8.381 LGA A 105 A 105 3.445 1 0.137 0.137 5.168 47.619 38.095 LGA G 106 G 106 0.910 0 0.094 0.094 1.597 83.810 83.810 LGA V 107 V 107 0.878 3 0.081 0.081 1.026 88.214 50.408 LGA W 108 W 108 0.634 10 0.077 0.077 0.875 90.476 25.850 LGA T 109 T 109 0.329 3 0.102 0.102 0.943 95.238 54.422 LGA F 110 F 110 0.509 7 0.046 0.046 1.023 90.595 32.944 LGA E 111 E 111 1.152 5 0.046 0.046 1.398 83.690 37.196 LGA D 112 D 112 2.063 4 0.062 0.062 2.476 66.786 33.393 LGA L 113 L 113 2.721 4 0.250 0.250 2.972 59.048 29.524 LGA S 114 S 114 3.911 2 0.609 0.609 5.529 36.310 24.206 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 103 412 412 100.00 815 412 50.55 111 SUMMARY(RMSD_GDC): 6.552 6.535 6.535 51.774 28.700 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 103 111 4.0 72 2.00 54.730 49.056 3.436 LGA_LOCAL RMSD: 1.996 Number of atoms: 72 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.722 Number of assigned atoms: 103 Std_ASGN_ATOMS RMSD: 6.552 Standard rmsd on all 103 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.718209 * X + 0.626286 * Y + -0.303218 * Z + 16.222012 Y_new = -0.141508 * X + 0.295197 * Y + 0.944899 * Z + 5.175955 Z_new = 0.681287 * X + 0.721543 * Y + -0.123389 * Z + -11.296539 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.947055 -0.749519 1.740165 [DEG: -168.8538 -42.9443 99.7041 ] ZXZ: -2.831074 1.694500 0.756710 [DEG: -162.2086 97.0877 43.3563 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0523AL396_1-D1 REMARK 2: T0523-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0523AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 103 111 4.0 72 2.00 49.056 6.55 REMARK ---------------------------------------------------------- MOLECULE T0523AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1byw ATOM 13 N ASP 4 13.332 25.187 9.995 1.00 0.00 N ATOM 14 CA ASP 4 12.770 23.844 9.940 1.00 0.00 C ATOM 15 C ASP 4 11.261 23.831 9.750 1.00 0.00 C ATOM 16 O ASP 4 10.608 24.871 9.797 1.00 0.00 O ATOM 17 N TYR 5 10.726 22.632 9.537 1.00 0.00 N ATOM 18 CA TYR 5 9.296 22.434 9.346 1.00 0.00 C ATOM 19 C TYR 5 8.892 21.063 9.885 1.00 0.00 C ATOM 20 O TYR 5 9.690 20.128 9.875 1.00 0.00 O ATOM 21 N LYS 6 7.654 20.950 10.358 1.00 0.00 N ATOM 22 CA LYS 6 7.148 19.685 10.885 1.00 0.00 C ATOM 23 C LYS 6 6.048 19.150 9.977 1.00 0.00 C ATOM 24 O LYS 6 5.094 19.857 9.663 1.00 0.00 O ATOM 25 N THR 7 6.187 17.899 9.554 1.00 0.00 N ATOM 26 CA THR 7 5.204 17.282 8.674 1.00 0.00 C ATOM 27 C THR 7 4.396 16.215 9.395 1.00 0.00 C ATOM 28 O THR 7 4.861 15.620 10.366 1.00 0.00 O ATOM 29 N ALA 8 3.184 15.981 8.908 1.00 0.00 N ATOM 30 CA ALA 8 2.284 14.983 9.475 1.00 0.00 C ATOM 31 C ALA 8 2.492 13.663 8.743 1.00 0.00 C ATOM 32 O ALA 8 1.978 13.466 7.643 1.00 0.00 O ATOM 33 N PHE 9 3.249 12.763 9.357 1.00 0.00 N ATOM 34 CA PHE 9 3.540 11.469 8.755 1.00 0.00 C ATOM 35 C PHE 9 2.288 10.633 8.532 1.00 0.00 C ATOM 36 O PHE 9 2.230 9.833 7.602 1.00 0.00 O ATOM 37 N HIS 10 1.285 10.827 9.383 1.00 0.00 N ATOM 38 CA HIS 10 0.034 10.075 9.285 1.00 0.00 C ATOM 39 C HIS 10 -0.894 10.595 8.189 1.00 0.00 C ATOM 40 O HIS 10 -2.115 10.545 8.320 1.00 0.00 O ATOM 41 N LEU 11 -0.308 11.097 7.108 1.00 0.00 N ATOM 42 CA LEU 11 -1.083 11.613 5.986 1.00 0.00 C ATOM 43 C LEU 11 -0.397 11.198 4.692 1.00 0.00 C ATOM 44 O LEU 11 0.808 10.950 4.673 1.00 0.00 O ATOM 45 N ARG 20 -1.165 11.125 3.611 1.00 0.00 N ATOM 46 CA ARG 20 -0.623 10.723 2.319 1.00 0.00 C ATOM 47 C ARG 20 0.364 11.733 1.739 1.00 0.00 C ATOM 48 O ARG 20 1.381 11.352 1.154 1.00 0.00 O ATOM 49 N ASP 21 0.067 13.018 1.904 1.00 0.00 N ATOM 50 CA ASP 21 0.927 14.071 1.370 1.00 0.00 C ATOM 51 C ASP 21 1.911 14.654 2.381 1.00 0.00 C ATOM 52 O ASP 21 2.638 15.598 2.066 1.00 0.00 O ATOM 53 N ARG 22 1.940 14.092 3.586 1.00 0.00 N ATOM 54 CA ARG 22 2.837 14.579 4.630 1.00 0.00 C ATOM 55 C ARG 22 2.690 16.092 4.773 1.00 0.00 C ATOM 56 O ARG 22 3.679 16.819 4.875 1.00 0.00 O ATOM 57 N VAL 23 1.443 16.550 4.775 1.00 0.00 N ATOM 58 CA VAL 23 1.129 17.968 4.885 1.00 0.00 C ATOM 59 C VAL 23 1.917 18.665 5.986 1.00 0.00 C ATOM 60 O VAL 23 2.036 18.153 7.098 1.00 0.00 O ATOM 61 N ILE 24 2.451 19.839 5.665 1.00 0.00 N ATOM 62 CA ILE 24 3.218 20.624 6.623 1.00 0.00 C ATOM 63 C ILE 24 2.281 21.160 7.704 1.00 0.00 C ATOM 64 O ILE 24 1.374 21.934 7.422 1.00 0.00 O ATOM 65 N GLU 25 2.501 20.739 8.942 1.00 0.00 N ATOM 66 CA GLU 25 1.666 21.186 10.048 1.00 0.00 C ATOM 67 C GLU 25 2.321 22.326 10.815 1.00 0.00 C ATOM 68 O GLU 25 1.757 22.832 11.780 1.00 0.00 O ATOM 69 N ASP 26 3.512 22.725 10.379 1.00 0.00 N ATOM 70 CA ASP 26 4.238 23.815 11.018 1.00 0.00 C ATOM 71 C ASP 26 5.527 24.170 10.290 1.00 0.00 C ATOM 72 O ASP 26 6.202 23.305 9.734 1.00 0.00 O ATOM 73 N CYS 27 5.857 25.457 10.312 1.00 0.00 N ATOM 74 CA CYS 27 7.068 25.977 9.689 1.00 0.00 C ATOM 75 C CYS 27 7.479 27.215 10.480 1.00 0.00 C ATOM 76 O CYS 27 6.682 28.136 10.659 1.00 0.00 O ATOM 77 N ASN 28 8.717 27.229 10.964 1.00 0.00 N ATOM 78 CA ASN 28 9.207 28.355 11.747 1.00 0.00 C ATOM 79 C ASN 28 9.527 29.574 10.884 1.00 0.00 C ATOM 80 O ASN 28 9.609 29.479 9.660 1.00 0.00 O ATOM 81 N ASP 29 9.702 30.720 11.539 1.00 0.00 N ATOM 82 CA ASP 29 10.002 31.974 10.858 1.00 0.00 C ATOM 83 C ASP 29 11.215 31.866 9.947 1.00 0.00 C ATOM 84 O ASP 29 11.238 32.452 8.863 1.00 0.00 O ATOM 85 N GLU 30 12.221 31.118 10.391 1.00 0.00 N ATOM 86 CA GLU 30 13.432 30.949 9.604 1.00 0.00 C ATOM 87 C GLU 30 13.210 30.353 8.226 1.00 0.00 C ATOM 88 O GLU 30 13.772 30.827 7.238 1.00 0.00 O ATOM 89 N LEU 31 12.402 29.303 8.154 1.00 0.00 N ATOM 90 CA LEU 31 12.122 28.656 6.882 1.00 0.00 C ATOM 91 C LEU 31 11.461 29.641 5.923 1.00 0.00 C ATOM 92 O LEU 31 11.933 29.854 4.804 1.00 0.00 O ATOM 93 N ALA 32 10.367 30.241 6.382 1.00 0.00 N ATOM 94 CA ALA 32 9.607 31.203 5.593 1.00 0.00 C ATOM 95 C ALA 32 10.482 32.304 4.997 1.00 0.00 C ATOM 96 O ALA 32 10.341 32.654 3.823 1.00 0.00 O ATOM 97 N ALA 33 11.386 32.844 5.805 1.00 0.00 N ATOM 98 CA ALA 33 12.276 33.903 5.344 1.00 0.00 C ATOM 99 C ALA 33 13.281 33.363 4.338 1.00 0.00 C ATOM 100 O ALA 33 13.689 34.063 3.413 1.00 0.00 O ATOM 101 N ILE 34 13.675 32.108 4.525 1.00 0.00 N ATOM 102 CA ILE 34 14.636 31.463 3.643 1.00 0.00 C ATOM 103 C ILE 34 14.072 31.250 2.243 1.00 0.00 C ATOM 104 O ILE 34 14.690 31.639 1.252 1.00 0.00 O ATOM 105 N PHE 35 12.898 30.632 2.166 1.00 0.00 N ATOM 106 CA PHE 35 12.261 30.359 0.883 1.00 0.00 C ATOM 107 C PHE 35 11.519 31.571 0.326 1.00 0.00 C ATOM 108 O PHE 35 11.248 31.644 -0.876 1.00 0.00 O ATOM 109 N ARG 36 11.186 32.517 1.199 1.00 0.00 N ATOM 110 CA ARG 36 10.481 33.708 0.759 1.00 0.00 C ATOM 111 C ARG 36 8.975 33.535 0.719 1.00 0.00 C ATOM 112 O ARG 36 8.255 34.412 0.242 1.00 0.00 O ATOM 113 N CYS 37 8.498 32.399 1.219 1.00 0.00 N ATOM 114 CA CYS 37 7.067 32.116 1.244 1.00 0.00 C ATOM 115 C CYS 37 6.533 32.331 2.656 1.00 0.00 C ATOM 116 O CYS 37 7.237 32.091 3.631 1.00 0.00 O ATOM 117 N ALA 38 5.286 32.777 2.760 1.00 0.00 N ATOM 118 CA ALA 38 4.675 33.037 4.056 1.00 0.00 C ATOM 119 C ALA 38 4.124 31.775 4.706 1.00 0.00 C ATOM 120 O ALA 38 3.817 30.800 4.024 1.00 0.00 O ATOM 121 N ARG 39 3.994 31.808 6.030 1.00 0.00 N ATOM 122 CA ARG 39 3.489 30.669 6.788 1.00 0.00 C ATOM 123 C ARG 39 2.144 30.172 6.276 1.00 0.00 C ATOM 124 O ARG 39 1.898 28.966 6.235 1.00 0.00 O ATOM 125 N ALA 40 1.273 31.098 5.891 1.00 0.00 N ATOM 126 CA ALA 40 -0.049 30.732 5.390 1.00 0.00 C ATOM 127 C ALA 40 0.044 29.953 4.080 1.00 0.00 C ATOM 128 O ALA 40 -0.790 29.089 3.805 1.00 0.00 O ATOM 129 N ASP 41 1.060 30.261 3.278 1.00 0.00 N ATOM 130 CA ASP 41 1.262 29.581 2.002 1.00 0.00 C ATOM 131 C ASP 41 1.812 28.169 2.201 1.00 0.00 C ATOM 132 O ASP 41 1.343 27.217 1.582 1.00 0.00 O ATOM 133 N LEU 42 2.819 28.049 3.062 1.00 0.00 N ATOM 134 CA LEU 42 3.462 26.771 3.341 1.00 0.00 C ATOM 135 C LEU 42 2.556 25.764 4.044 1.00 0.00 C ATOM 136 O LEU 42 2.556 24.581 3.706 1.00 0.00 O ATOM 137 N ILE 43 1.786 26.232 5.018 1.00 0.00 N ATOM 138 CA ILE 43 0.889 25.361 5.771 1.00 0.00 C ATOM 139 C ILE 43 0.045 24.440 4.892 1.00 0.00 C ATOM 140 O ILE 43 -0.487 24.852 3.864 1.00 0.00 O ATOM 141 N GLY 44 -0.059 23.182 5.308 1.00 0.00 N ATOM 142 CA GLY 44 -0.849 22.174 4.609 1.00 0.00 C ATOM 143 C GLY 44 -0.332 21.726 3.252 1.00 0.00 C ATOM 144 O GLY 44 -1.057 21.080 2.499 1.00 0.00 O ATOM 145 N ARG 45 0.912 22.058 2.934 1.00 0.00 N ATOM 146 CA ARG 45 1.485 21.666 1.653 1.00 0.00 C ATOM 147 C ARG 45 2.436 20.484 1.836 1.00 0.00 C ATOM 148 O ARG 45 3.031 20.317 2.901 1.00 0.00 O ATOM 149 N SER 46 2.579 19.636 0.802 1.00 0.00 N ATOM 150 CA SER 46 3.475 18.476 0.888 1.00 0.00 C ATOM 151 C SER 46 4.848 18.884 1.414 1.00 0.00 C ATOM 152 O SER 46 5.501 19.762 0.848 1.00 0.00 O ATOM 153 N PHE 47 5.280 18.237 2.493 1.00 0.00 N ATOM 154 CA PHE 47 6.560 18.552 3.112 1.00 0.00 C ATOM 155 C PHE 47 7.771 18.426 2.195 1.00 0.00 C ATOM 156 O PHE 47 8.888 18.743 2.602 1.00 0.00 O ATOM 157 N GLU 48 7.562 17.970 0.965 1.00 0.00 N ATOM 158 CA GLU 48 8.665 17.846 0.021 1.00 0.00 C ATOM 159 C GLU 48 8.954 19.221 -0.577 1.00 0.00 C ATOM 160 O GLU 48 9.958 19.416 -1.266 1.00 0.00 O ATOM 161 N VAL 49 7.556 21.142 -3.072 1.00 0.00 N ATOM 162 CA VAL 49 7.708 21.169 -4.521 1.00 0.00 C ATOM 163 C VAL 49 7.674 22.593 -5.060 1.00 0.00 C ATOM 164 O VAL 49 8.162 22.859 -6.162 1.00 0.00 O ATOM 165 N LEU 50 7.096 23.510 -4.289 1.00 0.00 N ATOM 166 CA LEU 50 7.013 24.899 -4.720 1.00 0.00 C ATOM 167 C LEU 50 8.385 25.556 -4.713 1.00 0.00 C ATOM 168 O LEU 50 8.554 26.661 -5.221 1.00 0.00 O ATOM 169 N TYR 51 9.366 24.864 -4.145 1.00 0.00 N ATOM 170 CA TYR 51 10.724 25.379 -4.082 1.00 0.00 C ATOM 171 C TYR 51 11.567 24.813 -5.217 1.00 0.00 C ATOM 172 O TYR 51 12.717 25.205 -5.399 1.00 0.00 O ATOM 173 N PRO 52 10.990 23.888 -5.978 1.00 0.00 N ATOM 174 CA PRO 52 11.701 23.253 -7.087 1.00 0.00 C ATOM 175 C PRO 52 11.832 24.160 -8.308 1.00 0.00 C ATOM 176 O PRO 52 11.027 25.064 -8.513 1.00 0.00 O ATOM 177 N SER 53 12.853 23.906 -9.118 1.00 0.00 N ATOM 178 CA SER 53 13.068 24.709 -10.304 1.00 0.00 C ATOM 179 C SER 53 13.983 24.048 -11.318 1.00 0.00 C ATOM 180 O SER 53 14.175 22.833 -11.283 1.00 0.00 O ATOM 181 N SER 54 14.565 24.829 -12.237 1.00 0.00 N ATOM 182 CA SER 54 15.472 24.343 -13.285 1.00 0.00 C ATOM 183 C SER 54 16.605 23.435 -12.816 1.00 0.00 C ATOM 184 O SER 54 16.737 22.307 -13.283 1.00 0.00 O ATOM 185 N ASP 55 17.423 23.933 -11.894 1.00 0.00 N ATOM 186 CA ASP 55 18.560 23.177 -11.381 1.00 0.00 C ATOM 187 C ASP 55 18.207 22.043 -10.413 1.00 0.00 C ATOM 188 O ASP 55 19.052 21.199 -10.105 1.00 0.00 O ATOM 189 N GLU 56 16.969 22.020 -9.930 1.00 0.00 N ATOM 190 CA GLU 56 16.551 20.976 -9.002 1.00 0.00 C ATOM 191 C GLU 56 16.692 19.601 -9.638 1.00 0.00 C ATOM 192 O GLU 56 15.987 19.273 -10.595 1.00 0.00 O ATOM 193 N PHE 57 17.602 18.800 -9.093 1.00 0.00 N ATOM 194 CA PHE 57 17.863 17.454 -9.596 1.00 0.00 C ATOM 195 C PHE 57 16.782 16.444 -9.218 1.00 0.00 C ATOM 196 O PHE 57 16.389 16.345 -8.057 1.00 0.00 O ATOM 197 N GLU 58 16.317 15.690 -10.210 1.00 0.00 N ATOM 198 CA GLU 58 15.284 14.684 -10.002 1.00 0.00 C ATOM 199 C GLU 58 15.733 13.621 -9.003 1.00 0.00 C ATOM 200 O GLU 58 14.916 13.072 -8.263 1.00 0.00 O ATOM 201 N ARG 59 17.032 13.330 -8.988 1.00 0.00 N ATOM 202 CA ARG 59 17.583 12.334 -8.072 1.00 0.00 C ATOM 203 C ARG 59 17.617 12.887 -6.654 1.00 0.00 C ATOM 204 O ARG 59 17.374 12.163 -5.686 1.00 0.00 O ATOM 205 N ILE 60 17.926 14.174 -6.536 1.00 0.00 N ATOM 206 CA ILE 60 17.991 14.828 -5.240 1.00 0.00 C ATOM 207 C ILE 60 16.601 14.874 -4.628 1.00 0.00 C ATOM 208 O ILE 60 16.434 14.704 -3.421 1.00 0.00 O ATOM 209 N GLY 61 15.601 15.100 -5.471 1.00 0.00 N ATOM 210 CA GLY 61 14.216 15.168 -5.024 1.00 0.00 C ATOM 211 C GLY 61 13.698 13.786 -4.637 1.00 0.00 C ATOM 212 O GLY 61 13.076 13.617 -3.592 1.00 0.00 O ATOM 213 N GLU 62 13.959 12.800 -5.490 1.00 0.00 N ATOM 214 CA GLU 62 13.518 11.429 -5.242 1.00 0.00 C ATOM 215 C GLU 62 14.082 10.891 -3.930 1.00 0.00 C ATOM 216 O GLU 62 13.406 10.161 -3.207 1.00 0.00 O ATOM 217 N ARG 63 15.322 11.255 -3.623 1.00 0.00 N ATOM 218 CA ARG 63 15.949 10.803 -2.393 1.00 0.00 C ATOM 219 C ARG 63 15.169 11.333 -1.191 1.00 0.00 C ATOM 220 O ARG 63 14.927 10.602 -0.225 1.00 0.00 O ATOM 221 N ILE 64 14.771 12.602 -1.255 1.00 0.00 N ATOM 222 CA ILE 64 14.018 13.221 -0.170 1.00 0.00 C ATOM 223 C ILE 64 12.661 12.549 -0.052 1.00 0.00 C ATOM 224 O ILE 64 12.146 12.349 1.046 1.00 0.00 O ATOM 225 N SER 65 12.085 12.198 -1.193 1.00 0.00 N ATOM 226 CA SER 65 10.785 11.548 -1.212 1.00 0.00 C ATOM 227 C SER 65 10.882 10.170 -0.568 1.00 0.00 C ATOM 228 O SER 65 10.039 9.794 0.248 1.00 0.00 O ATOM 229 N PRO 66 11.920 9.425 -0.937 1.00 0.00 N ATOM 230 CA PRO 66 12.138 8.082 -0.407 1.00 0.00 C ATOM 231 C PRO 66 12.275 8.113 1.109 1.00 0.00 C ATOM 232 O PRO 66 11.655 7.313 1.813 1.00 0.00 O ATOM 233 N VAL 67 13.089 9.040 1.604 1.00 0.00 N ATOM 234 CA VAL 67 13.309 9.180 3.037 1.00 0.00 C ATOM 235 C VAL 67 11.979 9.302 3.774 1.00 0.00 C ATOM 236 O VAL 67 11.748 8.626 4.776 1.00 0.00 O ATOM 237 N MET 68 11.106 10.166 3.268 1.00 0.00 N ATOM 238 CA MET 68 9.800 10.384 3.877 1.00 0.00 C ATOM 239 C MET 68 8.950 9.120 3.846 1.00 0.00 C ATOM 240 O MET 68 8.210 8.838 4.789 1.00 0.00 O ATOM 241 N ILE 69 9.064 8.362 2.759 1.00 0.00 N ATOM 242 CA ILE 69 8.301 7.127 2.600 1.00 0.00 C ATOM 243 C ILE 69 8.700 6.061 3.614 1.00 0.00 C ATOM 244 O ILE 69 7.876 5.608 4.406 1.00 0.00 O ATOM 245 N ALA 70 9.970 5.669 3.588 1.00 0.00 N ATOM 246 CA ALA 70 10.444 4.647 4.502 1.00 0.00 C ATOM 247 C ALA 70 10.930 5.160 5.843 1.00 0.00 C ATOM 248 O ALA 70 11.673 4.466 6.536 1.00 0.00 O ATOM 249 N HIS 71 10.511 6.366 6.217 1.00 0.00 N ATOM 250 CA HIS 71 10.925 6.953 7.490 1.00 0.00 C ATOM 251 C HIS 71 12.439 6.848 7.651 1.00 0.00 C ATOM 252 O HIS 71 12.944 6.412 8.690 1.00 0.00 O ATOM 253 N GLY 72 13.159 7.251 6.611 1.00 0.00 N ATOM 254 CA GLY 72 14.612 7.201 6.621 1.00 0.00 C ATOM 255 C GLY 72 15.211 8.515 7.092 1.00 0.00 C ATOM 256 O GLY 72 14.769 9.587 6.687 1.00 0.00 O ATOM 257 N SER 73 16.208 8.428 7.965 1.00 0.00 N ATOM 258 CA SER 73 16.898 9.616 8.446 1.00 0.00 C ATOM 259 C SER 73 17.923 9.878 7.346 1.00 0.00 C ATOM 260 O SER 73 18.835 9.074 7.138 1.00 0.00 O ATOM 261 N TYR 74 17.773 10.993 6.636 1.00 0.00 N ATOM 262 CA TYR 74 18.678 11.285 5.532 1.00 0.00 C ATOM 263 C TYR 74 18.905 12.764 5.230 1.00 0.00 C ATOM 264 O TYR 74 18.005 13.587 5.388 1.00 0.00 O ATOM 265 N ALA 75 20.118 13.083 4.782 1.00 0.00 N ATOM 266 CA ALA 75 20.493 14.451 4.425 1.00 0.00 C ATOM 267 C ALA 75 20.663 14.517 2.911 1.00 0.00 C ATOM 268 O ALA 75 21.438 13.753 2.339 1.00 0.00 O ATOM 269 N ASP 76 19.942 15.431 2.266 1.00 0.00 N ATOM 270 CA ASP 76 20.011 15.575 0.815 1.00 0.00 C ATOM 271 C ASP 76 20.302 17.008 0.372 1.00 0.00 C ATOM 272 O ASP 76 19.641 17.946 0.812 1.00 0.00 O ATOM 273 N ASP 77 21.294 17.173 -0.496 1.00 0.00 N ATOM 274 CA ASP 77 21.642 18.491 -1.012 1.00 0.00 C ATOM 275 C ASP 77 20.807 18.703 -2.265 1.00 0.00 C ATOM 276 O ASP 77 20.941 17.968 -3.239 1.00 0.00 O ATOM 277 N ARG 78 19.937 19.703 -2.237 1.00 0.00 N ATOM 278 CA ARG 78 19.065 19.971 -3.371 1.00 0.00 C ATOM 279 C ARG 78 19.016 21.461 -3.709 1.00 0.00 C ATOM 280 O ARG 78 19.084 22.314 -2.824 1.00 0.00 O ATOM 281 N ILE 79 18.912 21.763 -4.999 1.00 0.00 N ATOM 282 CA ILE 79 18.849 23.140 -5.470 1.00 0.00 C ATOM 283 C ILE 79 17.428 23.658 -5.319 1.00 0.00 C ATOM 284 O ILE 79 16.500 23.151 -5.952 1.00 0.00 O ATOM 285 N MET 80 17.263 24.676 -4.482 1.00 0.00 N ATOM 286 CA MET 80 15.949 25.253 -4.239 1.00 0.00 C ATOM 287 C MET 80 15.840 26.677 -4.789 1.00 0.00 C ATOM 288 O MET 80 16.844 27.379 -4.940 1.00 0.00 O ATOM 289 N LYS 81 14.611 27.093 -5.084 1.00 0.00 N ATOM 290 CA LYS 81 14.350 28.427 -5.615 1.00 0.00 C ATOM 291 C LYS 81 13.352 29.176 -4.736 1.00 0.00 C ATOM 292 O LYS 81 12.268 28.668 -4.440 1.00 0.00 O ATOM 293 N ARG 82 13.721 30.383 -4.321 1.00 0.00 N ATOM 294 CA ARG 82 12.854 31.201 -3.483 1.00 0.00 C ATOM 295 C ARG 82 11.709 31.781 -4.306 1.00 0.00 C ATOM 296 O ARG 82 11.622 31.551 -5.513 1.00 0.00 O ATOM 297 N ALA 83 10.830 32.531 -3.652 1.00 0.00 N ATOM 298 CA ALA 83 9.695 33.136 -4.338 1.00 0.00 C ATOM 299 C ALA 83 10.150 34.224 -5.308 1.00 0.00 C ATOM 300 O ALA 83 9.477 34.501 -6.307 1.00 0.00 O ATOM 301 N GLY 84 11.293 34.834 -5.006 1.00 0.00 N ATOM 302 CA GLY 84 11.849 35.891 -5.841 1.00 0.00 C ATOM 303 C GLY 84 12.606 35.307 -7.033 1.00 0.00 C ATOM 304 O GLY 84 13.293 36.030 -7.759 1.00 0.00 O ATOM 305 N GLY 85 12.479 33.997 -7.229 1.00 0.00 N ATOM 306 CA GLY 85 13.157 33.343 -8.335 1.00 0.00 C ATOM 307 C GLY 85 14.590 32.958 -8.012 1.00 0.00 C ATOM 308 O GLY 85 15.167 32.085 -8.664 1.00 0.00 O ATOM 309 N GLU 86 15.167 33.611 -7.007 1.00 0.00 N ATOM 310 CA GLU 86 16.536 33.339 -6.594 1.00 0.00 C ATOM 311 C GLU 86 16.748 31.850 -6.347 1.00 0.00 C ATOM 312 O GLU 86 15.854 31.156 -5.865 1.00 0.00 O ATOM 313 N LEU 87 17.939 31.366 -6.677 1.00 0.00 N ATOM 314 CA LEU 87 18.272 29.957 -6.499 1.00 0.00 C ATOM 315 C LEU 87 19.338 29.787 -5.426 1.00 0.00 C ATOM 316 O LEU 87 20.233 30.623 -5.289 1.00 0.00 O ATOM 317 N PHE 88 19.240 28.706 -4.661 1.00 0.00 N ATOM 318 CA PHE 88 20.215 28.446 -3.616 1.00 0.00 C ATOM 319 C PHE 88 20.359 26.957 -3.337 1.00 0.00 C ATOM 320 O PHE 88 19.394 26.197 -3.429 1.00 0.00 O ATOM 321 N TRP 89 21.584 26.552 -3.013 1.00 0.00 N ATOM 322 CA TRP 89 21.895 25.161 -2.703 1.00 0.00 C ATOM 323 C TRP 89 21.483 24.884 -1.262 1.00 0.00 C ATOM 324 O TRP 89 22.066 25.427 -0.322 1.00 0.00 O ATOM 325 N CYS 90 20.476 24.034 -1.092 1.00 0.00 N ATOM 326 CA CYS 90 19.978 23.711 0.237 1.00 0.00 C ATOM 327 C CYS 90 20.246 22.270 0.655 1.00 0.00 C ATOM 328 O CYS 90 20.158 21.347 -0.157 1.00 0.00 O ATOM 329 N HIS 91 20.580 22.089 1.928 1.00 0.00 N ATOM 330 CA HIS 91 20.830 20.764 2.476 1.00 0.00 C ATOM 331 C HIS 91 19.616 20.387 3.321 1.00 0.00 C ATOM 332 O HIS 91 19.402 20.951 4.393 1.00 0.00 O ATOM 333 N VAL 92 18.819 19.444 2.827 1.00 0.00 N ATOM 334 CA VAL 92 17.630 19.007 3.545 1.00 0.00 C ATOM 335 C VAL 92 17.945 17.876 4.515 1.00 0.00 C ATOM 336 O VAL 92 18.589 16.891 4.157 1.00 0.00 O ATOM 337 N THR 93 17.486 18.032 5.751 1.00 0.00 N ATOM 338 CA THR 93 17.705 17.034 6.784 1.00 0.00 C ATOM 339 C THR 93 16.364 16.413 7.158 1.00 0.00 C ATOM 340 O THR 93 15.600 16.987 7.933 1.00 0.00 O ATOM 341 N GLY 94 16.072 15.247 6.588 1.00 0.00 N ATOM 342 CA GLY 94 14.824 14.544 6.876 1.00 0.00 C ATOM 343 C GLY 94 14.971 13.742 8.167 1.00 0.00 C ATOM 344 O GLY 94 15.641 12.713 8.191 1.00 0.00 O ATOM 345 N ARG 95 14.348 14.221 9.238 1.00 0.00 N ATOM 346 CA ARG 95 14.426 13.543 10.524 1.00 0.00 C ATOM 347 C ARG 95 13.086 12.956 10.956 1.00 0.00 C ATOM 348 O ARG 95 12.216 13.670 11.460 1.00 0.00 O ATOM 349 N ALA 96 12.903 11.643 10.762 1.00 0.00 N ATOM 350 CA ALA 96 11.644 11.006 11.157 1.00 0.00 C ATOM 351 C ALA 96 11.533 10.939 12.677 1.00 0.00 C ATOM 352 O ALA 96 12.541 10.806 13.372 1.00 0.00 O ATOM 353 N LEU 97 10.311 11.042 13.190 1.00 0.00 N ATOM 354 CA LEU 97 10.076 10.985 14.628 1.00 0.00 C ATOM 355 C LEU 97 9.098 9.855 14.952 1.00 0.00 C ATOM 356 O LEU 97 7.896 9.971 14.708 1.00 0.00 O ATOM 357 N ASP 98 7.454 6.719 17.639 1.00 0.00 N ATOM 358 CA ASP 98 7.005 6.518 19.011 1.00 0.00 C ATOM 359 C ASP 98 7.581 5.214 19.540 1.00 0.00 C ATOM 360 O ASP 98 8.458 4.614 18.917 1.00 0.00 O ATOM 361 N ARG 99 7.076 4.774 20.688 1.00 0.00 N ATOM 362 CA ARG 99 7.538 3.529 21.290 1.00 0.00 C ATOM 363 C ARG 99 7.251 2.377 20.330 1.00 0.00 C ATOM 364 O ARG 99 8.074 1.471 20.162 1.00 0.00 O ATOM 365 N THR 100 6.081 2.427 19.697 1.00 0.00 N ATOM 366 CA THR 100 5.697 1.390 18.756 1.00 0.00 C ATOM 367 C THR 100 6.515 1.434 17.479 1.00 0.00 C ATOM 368 O THR 100 6.341 0.596 16.593 1.00 0.00 O ATOM 369 N ALA 101 7.407 2.414 17.380 1.00 0.00 N ATOM 370 CA ALA 101 8.233 2.534 16.194 1.00 0.00 C ATOM 371 C ALA 101 7.488 3.136 15.019 1.00 0.00 C ATOM 372 O ALA 101 8.013 3.200 13.906 1.00 0.00 O ATOM 373 N PRO 102 6.259 3.580 15.260 1.00 0.00 N ATOM 374 CA PRO 102 5.454 4.187 14.211 1.00 0.00 C ATOM 375 C PRO 102 5.877 5.638 14.022 1.00 0.00 C ATOM 376 O PRO 102 6.119 6.354 14.997 1.00 0.00 O ATOM 377 N LEU 103 5.970 6.067 12.767 1.00 0.00 N ATOM 378 CA LEU 103 6.355 7.439 12.461 1.00 0.00 C ATOM 379 C LEU 103 5.174 8.370 12.707 1.00 0.00 C ATOM 380 O LEU 103 4.162 8.305 12.012 1.00 0.00 O ATOM 381 N ALA 104 5.308 9.230 13.708 1.00 0.00 N ATOM 382 CA ALA 104 4.251 10.171 14.049 1.00 0.00 C ATOM 383 C ALA 104 4.336 11.432 13.199 1.00 0.00 C ATOM 384 O ALA 104 3.371 11.817 12.535 1.00 0.00 O ATOM 385 N ALA 105 5.497 12.074 13.230 1.00 0.00 N ATOM 386 CA ALA 105 5.712 13.292 12.469 1.00 0.00 C ATOM 387 C ALA 105 7.113 13.312 11.872 1.00 0.00 C ATOM 388 O ALA 105 7.951 12.467 12.187 1.00 0.00 O ATOM 389 N GLY 106 7.355 14.287 11.005 1.00 0.00 N ATOM 390 CA GLY 106 8.652 14.439 10.359 1.00 0.00 C ATOM 391 C GLY 106 9.200 15.817 10.699 1.00 0.00 C ATOM 392 O GLY 106 8.436 16.765 10.895 1.00 0.00 O ATOM 393 N VAL 107 10.519 15.927 10.776 1.00 0.00 N ATOM 394 CA VAL 107 11.151 17.203 11.055 1.00 0.00 C ATOM 395 C VAL 107 12.185 17.429 9.965 1.00 0.00 C ATOM 396 O VAL 107 13.218 16.757 9.931 1.00 0.00 O ATOM 397 N TRP 108 11.895 18.361 9.065 1.00 0.00 N ATOM 398 CA TRP 108 12.812 18.677 7.978 1.00 0.00 C ATOM 399 C TRP 108 13.581 19.956 8.304 1.00 0.00 C ATOM 400 O TRP 108 12.987 20.995 8.599 1.00 0.00 O ATOM 401 N THR 109 14.905 19.871 8.256 1.00 0.00 N ATOM 402 CA THR 109 15.755 21.014 8.543 1.00 0.00 C ATOM 403 C THR 109 16.457 21.456 7.266 1.00 0.00 C ATOM 404 O THR 109 17.091 20.654 6.585 1.00 0.00 O ATOM 405 N PHE 110 16.330 22.735 6.941 1.00 0.00 N ATOM 406 CA PHE 110 16.952 23.280 5.746 1.00 0.00 C ATOM 407 C PHE 110 18.112 24.185 6.134 1.00 0.00 C ATOM 408 O PHE 110 18.055 24.891 7.136 1.00 0.00 O ATOM 409 N GLU 111 19.171 24.148 5.337 1.00 0.00 N ATOM 410 CA GLU 111 20.344 24.972 5.582 1.00 0.00 C ATOM 411 C GLU 111 20.993 25.296 4.246 1.00 0.00 C ATOM 412 O GLU 111 21.116 24.428 3.382 1.00 0.00 O ATOM 413 N ASP 112 21.399 26.549 4.075 1.00 0.00 N ATOM 414 CA ASP 112 22.026 26.972 2.830 1.00 0.00 C ATOM 415 C ASP 112 23.479 26.526 2.741 1.00 0.00 C ATOM 416 O ASP 112 24.291 26.830 3.614 1.00 0.00 O ATOM 417 N LEU 113 23.799 25.801 1.676 1.00 0.00 N ATOM 418 CA LEU 113 25.152 25.308 1.457 1.00 0.00 C ATOM 419 C LEU 113 25.950 26.313 0.635 1.00 0.00 C ATOM 420 O LEU 113 27.138 26.522 0.878 1.00 0.00 O ATOM 421 N SER 114 25.291 26.939 -0.334 1.00 0.00 N ATOM 422 CA SER 114 25.953 27.912 -1.190 1.00 0.00 C ATOM 423 C SER 114 24.948 28.679 -2.044 1.00 0.00 C ATOM 424 O SER 114 23.934 28.128 -2.471 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 412 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 56.59 71.8 202 91.8 220 ARMSMC SECONDARY STRUCTURE . . 48.78 77.9 122 91.0 134 ARMSMC SURFACE . . . . . . . . 60.60 66.7 132 94.3 140 ARMSMC BURIED . . . . . . . . 48.10 81.4 70 87.5 80 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 89 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 56 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 58 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.55 (Number of atoms: 103) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.55 103 92.8 111 CRMSCA CRN = ALL/NP . . . . . 0.0636 CRMSCA SECONDARY STRUCTURE . . 6.91 62 92.5 67 CRMSCA SURFACE . . . . . . . . 7.42 68 95.8 71 CRMSCA BURIED . . . . . . . . 4.41 35 87.5 40 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.54 412 75.3 547 CRMSMC SECONDARY STRUCTURE . . 6.95 248 74.9 331 CRMSMC SURFACE . . . . . . . . 7.34 272 77.3 352 CRMSMC BURIED . . . . . . . . 4.58 140 71.8 195 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 424 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 378 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 270 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 265 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 159 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.54 412 47.5 868 CRMSALL SECONDARY STRUCTURE . . 6.95 248 46.1 538 CRMSALL SURFACE . . . . . . . . 7.34 272 49.5 549 CRMSALL BURIED . . . . . . . . 4.58 140 43.9 319 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.580 1.000 0.500 103 92.8 111 ERRCA SECONDARY STRUCTURE . . 4.723 1.000 0.500 62 92.5 67 ERRCA SURFACE . . . . . . . . 5.314 1.000 0.500 68 95.8 71 ERRCA BURIED . . . . . . . . 3.154 1.000 0.500 35 87.5 40 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.560 1.000 0.500 412 75.3 547 ERRMC SECONDARY STRUCTURE . . 4.724 1.000 0.500 248 74.9 331 ERRMC SURFACE . . . . . . . . 5.244 1.000 0.500 272 77.3 352 ERRMC BURIED . . . . . . . . 3.231 1.000 0.500 140 71.8 195 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 424 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 378 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 270 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 265 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 159 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.560 1.000 0.500 412 47.5 868 ERRALL SECONDARY STRUCTURE . . 4.724 1.000 0.500 248 46.1 538 ERRALL SURFACE . . . . . . . . 5.244 1.000 0.500 272 49.5 549 ERRALL BURIED . . . . . . . . 3.231 1.000 0.500 140 43.9 319 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 8 37 55 73 90 103 111 DISTCA CA (P) 7.21 33.33 49.55 65.77 81.08 111 DISTCA CA (RMS) 0.73 1.33 1.79 2.46 3.78 DISTCA ALL (N) 31 153 221 292 359 412 868 DISTALL ALL (P) 3.57 17.63 25.46 33.64 41.36 868 DISTALL ALL (RMS) 0.76 1.37 1.80 2.46 3.69 DISTALL END of the results output