####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 98 ( 392), selected 98 , name T0523AL285_1-D1 # Molecule2: number of CA atoms 111 ( 868), selected 98 , name T0523-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0523AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 98 16 - 114 3.16 3.16 LCS_AVERAGE: 88.29 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 16 - 56 1.79 3.58 LCS_AVERAGE: 29.89 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 16 - 51 0.87 3.46 LCS_AVERAGE: 20.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 98 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 16 L 16 36 40 98 9 47 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT V 17 V 17 36 40 98 5 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 18 L 18 36 40 98 4 28 65 74 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 19 S 19 36 40 98 16 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 20 R 20 36 40 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 21 D 21 36 40 98 16 44 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 22 R 22 36 40 98 11 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT V 23 V 23 36 40 98 7 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 24 I 24 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT E 25 E 25 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 26 D 26 36 40 98 7 41 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT C 27 C 27 36 40 98 5 28 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT N 28 N 28 36 40 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 29 D 29 36 40 98 5 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT E 30 E 30 36 40 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 31 L 31 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 32 A 32 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 33 A 33 36 40 98 13 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 34 I 34 36 40 98 5 25 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT F 35 F 35 36 40 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 36 R 36 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT C 37 C 37 36 40 98 4 8 67 74 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 38 A 38 36 40 98 6 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 39 R 39 36 40 98 16 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 40 A 40 36 40 98 16 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 41 D 41 36 40 98 16 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 42 L 42 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 43 I 43 36 40 98 18 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 44 G 44 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 45 R 45 36 40 98 16 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 46 S 46 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT F 47 F 47 36 40 98 12 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT E 48 E 48 36 40 98 8 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT V 49 V 49 36 40 98 7 40 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 50 L 50 36 40 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT Y 51 Y 51 36 40 98 11 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 53 S 53 4 40 98 3 7 19 44 74 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 54 S 54 4 40 98 4 10 18 26 35 70 82 87 89 89 91 91 92 92 94 95 96 97 97 98 LCS_GDT D 55 D 55 4 40 98 3 4 9 12 22 28 35 71 84 88 90 91 92 92 93 95 95 97 97 98 LCS_GDT E 56 E 56 4 40 98 3 10 26 61 74 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT F 57 F 57 14 21 98 4 8 12 16 19 22 26 32 45 71 80 91 91 92 93 95 96 97 97 98 LCS_GDT E 58 E 58 14 21 98 6 11 16 31 54 79 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 59 R 59 14 21 98 4 10 15 19 39 77 81 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 60 I 60 14 33 98 6 12 16 21 54 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 61 G 61 14 37 98 6 12 51 71 76 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT E 62 E 62 14 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 63 R 63 14 37 98 6 28 64 74 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 64 I 64 14 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 65 S 65 14 37 98 6 12 29 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT P 66 P 66 14 37 98 8 20 40 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT V 67 V 67 14 37 98 7 22 41 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT M 68 M 68 14 37 98 6 22 44 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 69 I 69 14 37 98 5 12 19 40 64 80 81 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 70 A 70 14 37 98 5 12 16 26 48 78 81 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT H 71 H 71 14 37 98 4 9 15 21 29 39 68 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 72 G 72 25 37 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 73 S 73 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT Y 74 Y 74 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 75 A 75 25 37 98 9 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 76 D 76 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 77 D 77 25 37 98 9 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 78 R 78 25 37 98 6 20 47 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT I 79 I 79 25 37 98 12 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT M 80 M 80 25 37 98 16 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT K 81 K 81 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 82 R 82 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 83 A 83 25 37 98 8 41 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 84 G 84 25 37 98 7 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 85 G 85 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT E 86 E 86 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 87 L 87 25 37 98 6 47 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT F 88 F 88 25 37 98 7 32 65 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT W 89 W 89 25 37 98 9 33 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT C 90 C 90 25 37 98 9 45 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT H 91 H 91 25 37 98 9 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT V 92 V 92 25 37 98 9 40 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT T 93 T 93 25 37 98 8 44 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 94 G 94 25 37 98 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 95 R 95 25 37 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 96 A 96 25 37 98 8 42 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 97 L 97 19 37 98 5 28 65 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 98 D 98 4 37 98 4 4 4 17 25 30 75 80 83 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT R 99 R 99 4 5 98 4 4 4 5 7 8 9 12 14 20 34 43 45 57 94 95 95 96 97 98 LCS_GDT T 100 T 100 4 5 98 4 4 4 5 9 12 18 32 37 73 84 88 92 94 94 95 96 97 97 98 LCS_GDT A 101 A 101 4 5 98 4 4 4 4 4 9 13 31 51 73 82 88 92 94 94 95 96 97 97 98 LCS_GDT P 102 P 102 4 6 98 3 4 4 5 9 12 18 32 67 79 84 88 92 94 94 95 96 97 97 98 LCS_GDT L 103 L 103 4 7 98 3 5 6 8 10 15 30 70 77 82 87 90 92 94 94 95 96 97 97 98 LCS_GDT A 104 A 104 4 11 98 3 5 12 28 50 69 78 82 85 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT A 105 A 105 9 11 98 8 39 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT G 106 G 106 9 11 98 5 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT V 107 V 107 9 11 98 8 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT W 108 W 108 9 11 98 6 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT T 109 T 109 9 11 98 8 22 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT F 110 F 110 9 11 98 3 18 31 62 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT E 111 E 111 9 11 98 9 21 56 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT D 112 D 112 9 11 98 9 42 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT L 113 L 113 9 11 98 14 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_GDT S 114 S 114 6 11 98 3 9 63 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 LCS_AVERAGE LCS_A: 46.38 ( 20.97 29.89 88.29 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 19 48 67 75 79 81 84 87 89 89 91 91 92 94 94 95 96 97 97 98 GDT PERCENT_AT 17.12 43.24 60.36 67.57 71.17 72.97 75.68 78.38 80.18 80.18 81.98 81.98 82.88 84.68 84.68 85.59 86.49 87.39 87.39 88.29 GDT RMS_LOCAL 0.39 0.68 0.92 1.16 1.22 1.38 1.52 1.76 1.96 1.96 2.13 2.13 2.27 2.68 2.60 2.66 2.86 2.96 2.96 3.16 GDT RMS_ALL_AT 3.39 3.39 3.35 3.31 3.30 3.32 3.31 3.30 3.26 3.26 3.22 3.22 3.23 3.18 3.18 3.20 3.17 3.17 3.17 3.16 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 16 L 16 1.344 4 0.152 0.152 1.570 79.286 39.643 LGA V 17 V 17 1.055 3 0.100 0.100 1.466 81.429 46.531 LGA L 18 L 18 1.561 4 0.083 0.083 1.561 81.548 40.774 LGA S 19 S 19 0.518 2 0.039 0.039 0.784 95.238 63.492 LGA R 20 R 20 0.924 7 0.216 0.216 2.941 77.738 28.268 LGA D 21 D 21 1.059 4 0.266 0.266 1.364 85.952 42.976 LGA R 22 R 22 1.104 7 0.104 0.104 1.615 79.286 28.831 LGA V 23 V 23 1.249 3 0.049 0.049 1.249 81.429 46.531 LGA I 24 I 24 0.562 4 0.030 0.030 0.831 90.476 45.238 LGA E 25 E 25 0.826 5 0.030 0.030 1.258 90.595 40.265 LGA D 26 D 26 1.348 4 0.066 0.066 1.467 83.690 41.845 LGA C 27 C 27 1.191 2 0.603 0.603 2.032 75.119 50.079 LGA N 28 N 28 1.054 4 0.048 0.048 1.054 88.214 44.107 LGA D 29 D 29 1.154 4 0.095 0.095 1.250 88.333 44.167 LGA E 30 E 30 0.793 5 0.047 0.047 0.903 92.857 41.270 LGA L 31 L 31 0.566 4 0.012 0.012 0.707 95.238 47.619 LGA A 32 A 32 0.300 1 0.016 0.016 0.486 100.000 80.000 LGA A 33 A 33 0.486 1 0.173 0.173 1.145 92.976 74.381 LGA I 34 I 34 1.279 4 0.036 0.036 1.279 85.952 42.976 LGA F 35 F 35 0.242 7 0.054 0.054 0.422 100.000 36.364 LGA R 36 R 36 0.629 7 0.030 0.030 1.159 90.595 32.944 LGA C 37 C 37 1.649 2 0.167 0.167 1.875 75.000 50.000 LGA A 38 A 38 0.930 1 0.064 0.064 1.223 85.952 68.762 LGA R 39 R 39 0.801 7 0.103 0.103 1.211 88.214 32.078 LGA A 40 A 40 0.962 1 0.074 0.074 0.962 90.476 72.381 LGA D 41 D 41 1.067 4 0.064 0.064 1.067 88.214 44.107 LGA L 42 L 42 0.275 4 0.236 0.236 0.802 95.238 47.619 LGA I 43 I 43 0.633 4 0.047 0.047 0.633 95.238 47.619 LGA G 44 G 44 0.457 0 0.086 0.086 0.917 95.238 95.238 LGA R 45 R 45 0.926 7 0.119 0.119 1.314 88.214 32.078 LGA S 46 S 46 0.718 2 0.038 0.038 0.778 90.476 60.317 LGA F 47 F 47 1.029 7 0.030 0.030 1.094 85.952 31.255 LGA E 48 E 48 0.924 5 0.081 0.081 1.321 85.952 38.201 LGA V 49 V 49 1.670 3 0.188 0.188 1.670 79.286 45.306 LGA L 50 L 50 0.440 4 0.077 0.077 0.870 92.857 46.429 LGA Y 51 Y 51 1.227 8 0.034 0.034 1.227 88.333 29.444 LGA S 53 S 53 3.622 2 0.691 0.691 4.966 45.714 30.476 LGA S 54 S 54 5.515 2 0.084 0.084 6.996 22.262 14.841 LGA D 55 D 55 7.722 4 0.058 0.058 7.722 11.905 5.952 LGA E 56 E 56 3.729 5 0.571 0.571 4.681 38.810 17.249 LGA F 57 F 57 7.749 7 0.562 0.562 7.749 14.643 5.325 LGA E 58 E 58 4.292 5 0.160 0.160 5.727 39.762 17.672 LGA R 59 R 59 3.961 7 0.062 0.062 4.131 46.905 17.056 LGA I 60 I 60 3.436 4 0.046 0.046 3.826 53.810 26.905 LGA G 61 G 61 2.570 0 0.023 0.023 2.917 65.000 65.000 LGA E 62 E 62 0.185 5 0.085 0.085 1.765 88.452 39.312 LGA R 63 R 63 1.858 7 0.037 0.037 1.858 77.143 28.052 LGA I 64 I 64 0.466 4 0.064 0.064 1.672 88.571 44.286 LGA S 65 S 65 2.628 2 0.126 0.126 3.364 59.286 39.524 LGA P 66 P 66 3.192 3 0.029 0.029 3.568 50.119 28.639 LGA V 67 V 67 2.997 3 0.048 0.048 3.599 51.905 29.660 LGA M 68 M 68 2.865 4 0.085 0.085 4.257 48.690 24.345 LGA I 69 I 69 5.054 4 0.143 0.143 6.247 25.476 12.738 LGA A 70 A 70 5.963 1 0.297 0.297 5.963 22.619 18.095 LGA H 71 H 71 6.673 6 0.082 0.082 6.673 24.762 9.905 LGA G 72 G 72 1.142 0 0.597 0.597 3.052 69.405 69.405 LGA S 73 S 73 0.241 2 0.073 0.073 0.282 100.000 66.667 LGA Y 74 Y 74 0.697 8 0.030 0.030 0.790 90.476 30.159 LGA A 75 A 75 0.979 1 0.066 0.066 0.994 90.476 72.381 LGA D 76 D 76 0.641 4 0.028 0.028 0.859 90.476 45.238 LGA D 77 D 77 1.249 4 0.060 0.060 2.341 75.119 37.560 LGA R 78 R 78 2.201 7 0.138 0.138 2.201 75.119 27.316 LGA I 79 I 79 1.022 4 0.057 0.057 1.404 81.429 40.714 LGA M 80 M 80 1.030 4 0.058 0.058 1.030 83.690 41.845 LGA K 81 K 81 1.087 5 0.026 0.026 1.087 83.690 37.196 LGA R 82 R 82 0.901 7 0.718 0.718 3.049 75.833 27.576 LGA A 83 A 83 1.533 1 0.600 0.600 4.366 61.905 49.524 LGA G 84 G 84 0.662 0 0.144 0.144 0.662 90.476 90.476 LGA G 85 G 85 1.074 0 0.030 0.030 1.175 83.690 83.690 LGA E 86 E 86 1.063 5 0.108 0.108 1.141 83.690 37.196 LGA L 87 L 87 0.991 4 0.062 0.062 1.682 83.810 41.905 LGA F 88 F 88 1.789 7 0.054 0.054 1.789 75.000 27.273 LGA W 89 W 89 1.574 10 0.040 0.040 1.887 77.143 22.041 LGA C 90 C 90 0.760 2 0.153 0.153 0.910 92.857 61.905 LGA H 91 H 91 0.687 6 0.045 0.045 1.602 83.810 33.524 LGA V 92 V 92 1.198 3 0.030 0.030 1.198 81.429 46.531 LGA T 93 T 93 1.067 3 0.103 0.103 1.225 83.690 47.823 LGA G 94 G 94 0.710 0 0.116 0.116 0.926 90.476 90.476 LGA R 95 R 95 0.833 7 0.046 0.046 0.833 90.476 32.900 LGA A 96 A 96 1.490 1 0.035 0.035 2.136 75.119 60.095 LGA L 97 L 97 2.202 4 0.631 0.631 2.856 64.881 32.440 LGA D 98 D 98 6.887 4 0.297 0.297 9.697 10.357 5.179 LGA R 99 R 99 12.659 7 0.671 0.671 12.659 0.000 0.000 LGA T 100 T 100 10.657 3 0.593 0.593 11.262 0.238 0.136 LGA A 101 A 101 9.850 1 0.150 0.150 9.850 2.143 1.714 LGA P 102 P 102 8.930 3 0.664 0.664 9.831 1.905 1.088 LGA L 103 L 103 8.169 4 0.577 0.577 8.169 6.071 3.036 LGA A 104 A 104 5.667 1 0.525 0.525 6.352 26.786 21.429 LGA A 105 A 105 1.830 1 0.151 0.151 3.271 69.286 55.429 LGA G 106 G 106 1.084 0 0.156 0.156 1.276 83.690 83.690 LGA V 107 V 107 0.976 3 0.043 0.043 1.018 88.214 50.408 LGA W 108 W 108 1.067 10 0.101 0.101 1.103 81.429 23.265 LGA T 109 T 109 1.609 3 0.110 0.110 2.927 69.048 39.456 LGA F 110 F 110 2.434 7 0.055 0.055 2.434 66.786 24.286 LGA E 111 E 111 1.716 5 0.072 0.072 2.392 75.119 33.386 LGA D 112 D 112 0.888 4 0.075 0.075 1.121 88.214 44.107 LGA L 113 L 113 0.460 4 0.157 0.157 1.930 86.190 43.095 LGA S 114 S 114 1.929 2 0.087 0.087 5.353 58.214 38.810 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 98 392 392 100.00 767 392 51.11 111 SUMMARY(RMSD_GDC): 3.164 3.133 3.133 62.921 35.104 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 98 111 4.0 87 1.76 68.694 61.648 4.683 LGA_LOCAL RMSD: 1.758 Number of atoms: 87 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.297 Number of assigned atoms: 98 Std_ASGN_ATOMS RMSD: 3.164 Standard rmsd on all 98 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.498676 * X + 0.407950 * Y + 0.764787 * Z + 52.920174 Y_new = -0.699342 * X + -0.710634 * Y + -0.076939 * Z + -4.876493 Z_new = 0.512096 * X + -0.573215 * Y + 0.639673 * Z + -33.442631 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.190237 -0.537623 -0.730660 [DEG: -125.4913 -30.8036 -41.8637 ] ZXZ: 1.470532 0.876723 2.412450 [DEG: 84.2552 50.2325 138.2232 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0523AL285_1-D1 REMARK 2: T0523-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0523AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 98 111 4.0 87 1.76 61.648 3.16 REMARK ---------------------------------------------------------- MOLECULE T0523AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3ewkA ATOM 1 N LEU 16 13.973 24.980 9.178 1.00 0.00 N ATOM 2 CA LEU 16 13.196 23.900 9.836 1.00 0.00 C ATOM 3 C LEU 16 11.703 23.735 9.350 1.00 0.00 C ATOM 4 O LEU 16 10.856 24.674 9.300 1.00 0.00 O ATOM 5 N VAL 17 11.387 22.516 8.954 1.00 0.00 N ATOM 6 CA VAL 17 9.962 22.192 8.740 1.00 0.00 C ATOM 7 C VAL 17 9.611 20.740 9.136 1.00 0.00 C ATOM 8 O VAL 17 10.495 19.853 9.278 1.00 0.00 O ATOM 9 N LEU 18 8.306 20.543 9.316 1.00 0.00 N ATOM 10 CA LEU 18 7.674 19.243 9.621 1.00 0.00 C ATOM 11 C LEU 18 6.460 19.009 8.730 1.00 0.00 C ATOM 12 O LEU 18 5.657 19.916 8.471 1.00 0.00 O ATOM 13 N SER 19 6.350 17.772 8.271 1.00 0.00 N ATOM 14 CA SER 19 5.265 17.373 7.394 1.00 0.00 C ATOM 15 C SER 19 4.622 16.118 7.909 1.00 0.00 C ATOM 16 O SER 19 5.232 15.414 8.747 1.00 0.00 O ATOM 17 N ARG 20 3.385 15.830 7.454 1.00 0.00 N ATOM 18 CA ARG 20 2.823 14.489 7.665 1.00 0.00 C ATOM 19 C ARG 20 3.449 13.520 6.744 1.00 0.00 C ATOM 20 O ARG 20 4.338 13.859 5.996 1.00 0.00 O ATOM 21 N ASP 21 2.615 12.522 4.026 1.00 0.00 N ATOM 22 CA ASP 21 2.462 12.737 2.618 1.00 0.00 C ATOM 23 C ASP 21 3.216 13.941 2.171 1.00 0.00 C ATOM 24 O ASP 21 3.277 14.178 0.951 1.00 0.00 O ATOM 25 N ARG 22 3.814 14.696 3.123 1.00 0.00 N ATOM 26 CA ARG 22 4.654 15.805 2.705 1.00 0.00 C ATOM 27 C ARG 22 3.951 17.134 2.896 1.00 0.00 C ATOM 28 O ARG 22 4.477 18.165 2.588 1.00 0.00 O ATOM 29 N VAL 23 2.764 17.113 3.476 1.00 0.00 N ATOM 30 CA VAL 23 2.058 18.361 3.698 1.00 0.00 C ATOM 31 C VAL 23 2.689 19.022 4.920 1.00 0.00 C ATOM 32 O VAL 23 2.803 18.412 5.977 1.00 0.00 O ATOM 33 N ILE 24 3.086 20.272 4.741 1.00 0.00 N ATOM 34 CA ILE 24 3.811 21.056 5.755 1.00 0.00 C ATOM 35 C ILE 24 2.844 21.328 6.887 1.00 0.00 C ATOM 36 O ILE 24 1.771 21.931 6.680 1.00 0.00 O ATOM 37 N GLU 25 3.196 20.858 8.076 1.00 0.00 N ATOM 38 CA GLU 25 2.425 21.170 9.281 1.00 0.00 C ATOM 39 C GLU 25 3.100 22.344 9.955 1.00 0.00 C ATOM 40 O GLU 25 2.454 23.134 10.664 1.00 0.00 O ATOM 41 N ASP 26 4.415 22.436 9.710 1.00 0.00 N ATOM 42 CA ASP 26 5.289 23.474 10.250 1.00 0.00 C ATOM 43 C ASP 26 6.691 23.441 9.676 1.00 0.00 C ATOM 44 O ASP 26 7.169 22.354 9.462 1.00 0.00 O ATOM 45 N CYS 27 7.441 24.511 9.401 1.00 0.00 N ATOM 46 CA CYS 27 7.213 25.941 8.995 1.00 0.00 C ATOM 47 C CYS 27 7.946 27.040 9.855 1.00 0.00 C ATOM 48 O CYS 27 7.399 28.121 10.112 1.00 0.00 O ATOM 49 N ASN 28 9.195 26.787 10.271 1.00 0.00 N ATOM 50 CA ASN 28 9.877 27.781 11.163 1.00 0.00 C ATOM 51 C ASN 28 10.244 29.112 10.555 1.00 0.00 C ATOM 52 O ASN 28 10.029 29.337 9.367 1.00 0.00 O ATOM 53 N ASP 29 10.811 29.994 11.372 1.00 0.00 N ATOM 54 CA ASP 29 10.997 31.407 10.960 1.00 0.00 C ATOM 55 C ASP 29 12.033 31.607 9.879 1.00 0.00 C ATOM 56 O ASP 29 11.760 32.256 8.873 1.00 0.00 O ATOM 57 N GLU 30 13.207 31.019 10.076 1.00 0.00 N ATOM 58 CA GLU 30 14.232 30.883 9.042 1.00 0.00 C ATOM 59 C GLU 30 13.680 30.298 7.743 1.00 0.00 C ATOM 60 O GLU 30 13.876 30.855 6.682 1.00 0.00 O ATOM 61 N LEU 31 12.974 29.175 7.808 1.00 0.00 N ATOM 62 CA LEU 31 12.394 28.610 6.581 1.00 0.00 C ATOM 63 C LEU 31 11.557 29.665 5.819 1.00 0.00 C ATOM 64 O LEU 31 11.697 29.838 4.630 1.00 0.00 O ATOM 65 N ALA 32 10.719 30.386 6.536 1.00 0.00 N ATOM 66 CA ALA 32 9.896 31.431 5.925 1.00 0.00 C ATOM 67 C ALA 32 10.783 32.542 5.421 1.00 0.00 C ATOM 68 O ALA 32 10.583 33.070 4.298 1.00 0.00 O ATOM 69 N ALA 33 11.757 32.890 6.257 1.00 0.00 N ATOM 70 CA ALA 33 12.648 33.978 5.910 1.00 0.00 C ATOM 71 C ALA 33 13.212 33.670 4.527 1.00 0.00 C ATOM 72 O ALA 33 12.705 34.230 3.531 1.00 0.00 O ATOM 73 N ILE 34 14.169 32.726 4.460 1.00 0.00 N ATOM 74 CA ILE 34 14.893 32.426 3.224 1.00 0.00 C ATOM 75 C ILE 34 14.020 32.023 2.045 1.00 0.00 C ATOM 76 O ILE 34 14.247 32.498 0.973 1.00 0.00 O ATOM 77 N PHE 35 12.982 31.224 2.233 1.00 0.00 N ATOM 78 CA PHE 35 12.079 30.813 1.117 1.00 0.00 C ATOM 79 C PHE 35 11.323 31.983 0.509 1.00 0.00 C ATOM 80 O PHE 35 10.583 31.815 -0.466 1.00 0.00 O ATOM 81 N ARG 36 11.490 33.146 1.139 1.00 0.00 N ATOM 82 CA ARG 36 10.606 34.322 0.971 1.00 0.00 C ATOM 83 C ARG 36 9.106 33.968 0.864 1.00 0.00 C ATOM 84 O ARG 36 8.394 34.468 -0.021 1.00 0.00 O ATOM 85 N CYS 37 8.658 33.083 1.766 1.00 0.00 N ATOM 86 CA CYS 37 7.243 32.677 1.850 1.00 0.00 C ATOM 87 C CYS 37 6.755 32.906 3.272 1.00 0.00 C ATOM 88 O CYS 37 7.498 32.686 4.255 1.00 0.00 O ATOM 89 N ALA 38 5.499 33.342 3.375 1.00 0.00 N ATOM 90 CA ALA 38 4.883 33.557 4.670 1.00 0.00 C ATOM 91 C ALA 38 4.374 32.238 5.229 1.00 0.00 C ATOM 92 O ALA 38 3.807 31.439 4.483 1.00 0.00 O ATOM 93 N ARG 39 4.568 32.045 6.541 1.00 0.00 N ATOM 94 CA ARG 39 4.103 30.876 7.304 1.00 0.00 C ATOM 95 C ARG 39 2.689 30.358 6.967 1.00 0.00 C ATOM 96 O ARG 39 2.399 29.174 7.084 1.00 0.00 O ATOM 97 N ALA 40 1.815 31.235 6.519 1.00 0.00 N ATOM 98 CA ALA 40 0.454 30.814 6.219 1.00 0.00 C ATOM 99 C ALA 40 0.369 30.345 4.775 1.00 0.00 C ATOM 100 O ALA 40 -0.609 29.722 4.372 1.00 0.00 O ATOM 101 N ASP 41 1.372 30.662 3.974 1.00 0.00 N ATOM 102 CA ASP 41 1.397 30.173 2.604 1.00 0.00 C ATOM 103 C ASP 41 2.138 28.844 2.577 1.00 0.00 C ATOM 104 O ASP 41 2.122 28.091 1.605 1.00 0.00 O ATOM 105 N LEU 42 2.813 28.577 3.668 1.00 0.00 N ATOM 106 CA LEU 42 3.568 27.374 3.775 1.00 0.00 C ATOM 107 C LEU 42 2.704 26.288 4.424 1.00 0.00 C ATOM 108 O LEU 42 2.365 25.308 3.773 1.00 0.00 O ATOM 109 N ILE 43 2.359 26.479 5.698 1.00 0.00 N ATOM 110 CA ILE 43 1.507 25.534 6.414 1.00 0.00 C ATOM 111 C ILE 43 0.271 25.090 5.575 1.00 0.00 C ATOM 112 O ILE 43 -0.488 25.904 5.027 1.00 0.00 O ATOM 113 N GLY 44 0.144 23.775 5.419 1.00 0.00 N ATOM 114 CA GLY 44 -0.937 23.189 4.637 1.00 0.00 C ATOM 115 C GLY 44 -0.663 22.940 3.173 1.00 0.00 C ATOM 116 O GLY 44 -1.509 22.414 2.459 1.00 0.00 O ATOM 117 N ARG 45 0.527 23.329 2.744 1.00 0.00 N ATOM 118 CA ARG 45 0.987 23.182 1.410 1.00 0.00 C ATOM 119 C ARG 45 1.808 21.913 1.294 1.00 0.00 C ATOM 120 O ARG 45 2.323 21.411 2.317 1.00 0.00 O ATOM 121 N SER 46 1.919 21.380 0.070 1.00 0.00 N ATOM 122 CA SER 46 2.798 20.233 -0.208 1.00 0.00 C ATOM 123 C SER 46 4.216 20.796 -0.168 1.00 0.00 C ATOM 124 O SER 46 4.466 21.901 -0.721 1.00 0.00 O ATOM 125 N PHE 47 5.155 20.036 0.393 1.00 0.00 N ATOM 126 CA PHE 47 6.557 20.518 0.464 1.00 0.00 C ATOM 127 C PHE 47 7.131 20.640 -0.940 1.00 0.00 C ATOM 128 O PHE 47 8.146 21.327 -1.178 1.00 0.00 O ATOM 129 N GLU 48 6.454 19.992 -1.886 1.00 0.00 N ATOM 130 CA GLU 48 6.695 20.333 -3.289 1.00 0.00 C ATOM 131 C GLU 48 6.557 21.850 -3.614 1.00 0.00 C ATOM 132 O GLU 48 7.093 22.311 -4.592 1.00 0.00 O ATOM 133 N VAL 49 5.879 22.637 -2.779 1.00 0.00 N ATOM 134 CA VAL 49 5.756 24.068 -3.056 1.00 0.00 C ATOM 135 C VAL 49 7.115 24.655 -3.452 1.00 0.00 C ATOM 136 O VAL 49 7.213 25.290 -4.513 1.00 0.00 O ATOM 137 N LEU 50 8.179 24.404 -2.666 1.00 0.00 N ATOM 138 CA LEU 50 9.543 24.900 -2.937 1.00 0.00 C ATOM 139 C LEU 50 10.351 24.066 -3.929 1.00 0.00 C ATOM 140 O LEU 50 11.528 24.411 -4.188 1.00 0.00 O ATOM 141 N TYR 51 9.769 23.012 -4.514 1.00 0.00 N ATOM 142 CA TYR 51 10.570 22.188 -5.440 1.00 0.00 C ATOM 143 C TYR 51 11.122 23.074 -6.588 1.00 0.00 C ATOM 144 O TYR 51 10.661 24.180 -6.798 1.00 0.00 O ATOM 145 N SER 53 12.127 22.654 -7.331 1.00 0.00 N ATOM 146 CA SER 53 12.666 23.576 -8.346 1.00 0.00 C ATOM 147 C SER 53 12.816 22.957 -9.757 1.00 0.00 C ATOM 148 O SER 53 12.976 23.669 -10.739 1.00 0.00 O ATOM 149 N SER 54 12.756 21.640 -9.866 1.00 0.00 N ATOM 150 CA SER 54 12.862 21.023 -11.147 1.00 0.00 C ATOM 151 C SER 54 14.309 20.619 -11.294 1.00 0.00 C ATOM 152 O SER 54 14.597 19.684 -12.051 1.00 0.00 O ATOM 153 N ASP 55 15.204 21.279 -10.541 1.00 0.00 N ATOM 154 CA ASP 55 16.612 20.985 -10.575 1.00 0.00 C ATOM 155 C ASP 55 16.949 19.503 -10.400 1.00 0.00 C ATOM 156 O ASP 55 17.753 18.982 -11.170 1.00 0.00 O ATOM 157 N GLU 56 16.365 18.843 -9.385 1.00 0.00 N ATOM 158 CA GLU 56 16.677 17.435 -9.066 1.00 0.00 C ATOM 159 C GLU 56 15.864 16.430 -9.901 1.00 0.00 C ATOM 160 O GLU 56 14.672 16.657 -10.172 1.00 0.00 O ATOM 161 N PHE 57 16.505 15.338 -10.325 1.00 0.00 N ATOM 162 CA PHE 57 15.813 14.271 -11.025 1.00 0.00 C ATOM 163 C PHE 57 15.037 13.418 -10.040 1.00 0.00 C ATOM 164 O PHE 57 15.312 13.431 -8.845 1.00 0.00 O ATOM 165 N GLU 58 14.088 12.655 -10.561 1.00 0.00 N ATOM 166 CA GLU 58 13.102 11.942 -9.783 1.00 0.00 C ATOM 167 C GLU 58 13.753 10.871 -8.918 1.00 0.00 C ATOM 168 O GLU 58 13.157 10.393 -7.914 1.00 0.00 O ATOM 169 N ARG 59 14.959 10.448 -9.297 1.00 0.00 N ATOM 170 CA ARG 59 15.603 9.351 -8.531 1.00 0.00 C ATOM 171 C ARG 59 16.202 9.937 -7.250 1.00 0.00 C ATOM 172 O ARG 59 16.186 9.302 -6.193 1.00 0.00 O ATOM 173 N ILE 60 16.643 11.187 -7.330 1.00 0.00 N ATOM 174 CA ILE 60 17.096 11.849 -6.139 1.00 0.00 C ATOM 175 C ILE 60 15.966 11.954 -5.141 1.00 0.00 C ATOM 176 O ILE 60 16.186 11.758 -3.972 1.00 0.00 O ATOM 177 N GLY 61 14.758 12.261 -5.611 1.00 0.00 N ATOM 178 CA GLY 61 13.592 12.426 -4.735 1.00 0.00 C ATOM 179 C GLY 61 13.130 11.084 -4.242 1.00 0.00 C ATOM 180 O GLY 61 12.841 10.920 -3.058 1.00 0.00 O ATOM 181 N GLU 62 13.065 10.130 -5.170 1.00 0.00 N ATOM 182 CA GLU 62 12.669 8.721 -4.876 1.00 0.00 C ATOM 183 C GLU 62 13.587 8.027 -3.872 1.00 0.00 C ATOM 184 O GLU 62 13.097 7.369 -2.969 1.00 0.00 O ATOM 185 N ARG 63 14.903 8.185 -4.000 1.00 0.00 N ATOM 186 CA ARG 63 15.838 7.703 -2.946 1.00 0.00 C ATOM 187 C ARG 63 15.607 8.398 -1.603 1.00 0.00 C ATOM 188 O ARG 63 15.614 7.742 -0.586 1.00 0.00 O ATOM 189 N ILE 64 15.373 9.713 -1.582 1.00 0.00 N ATOM 190 CA ILE 64 15.070 10.424 -0.319 1.00 0.00 C ATOM 191 C ILE 64 13.863 9.799 0.472 1.00 0.00 C ATOM 192 O ILE 64 13.984 9.398 1.638 1.00 0.00 O ATOM 193 N SER 65 12.745 9.615 -0.239 1.00 0.00 N ATOM 194 CA SER 65 11.491 9.116 0.297 1.00 0.00 C ATOM 195 C SER 65 11.620 7.653 0.617 1.00 0.00 C ATOM 196 O SER 65 11.000 7.147 1.587 1.00 0.00 O ATOM 197 N PRO 66 12.372 6.949 -0.233 1.00 0.00 N ATOM 198 CA PRO 66 12.698 5.555 0.058 1.00 0.00 C ATOM 199 C PRO 66 13.562 5.392 1.275 1.00 0.00 C ATOM 200 O PRO 66 13.409 4.398 1.969 1.00 0.00 O ATOM 201 N VAL 67 14.394 6.379 1.598 1.00 0.00 N ATOM 202 CA VAL 67 15.143 6.248 2.837 1.00 0.00 C ATOM 203 C VAL 67 14.366 6.620 4.053 1.00 0.00 C ATOM 204 O VAL 67 14.363 5.892 4.981 1.00 0.00 O ATOM 205 N MET 68 13.686 7.760 4.050 1.00 0.00 N ATOM 206 CA MET 68 12.948 8.245 5.258 1.00 0.00 C ATOM 207 C MET 68 11.726 7.405 5.663 1.00 0.00 C ATOM 208 O MET 68 11.389 7.288 6.846 1.00 0.00 O ATOM 209 N ILE 69 11.049 6.841 4.670 1.00 0.00 N ATOM 210 CA ILE 69 9.823 6.080 4.929 1.00 0.00 C ATOM 211 C ILE 69 10.114 4.702 5.524 1.00 0.00 C ATOM 212 O ILE 69 9.254 4.095 6.191 1.00 0.00 O ATOM 213 N ALA 70 11.316 4.189 5.278 1.00 0.00 N ATOM 214 CA ALA 70 11.771 3.036 6.072 1.00 0.00 C ATOM 215 C ALA 70 12.419 3.416 7.442 1.00 0.00 C ATOM 216 O ALA 70 13.118 2.603 7.989 1.00 0.00 O ATOM 217 N HIS 71 12.171 4.611 7.999 1.00 0.00 N ATOM 218 CA HIS 71 12.604 4.916 9.360 1.00 0.00 C ATOM 219 C HIS 71 13.963 5.604 9.579 1.00 0.00 C ATOM 220 O HIS 71 14.100 6.385 10.554 1.00 0.00 O ATOM 221 N GLY 72 14.946 5.299 8.715 1.00 0.00 N ATOM 222 CA GLY 72 16.234 6.005 8.528 1.00 0.00 C ATOM 223 C GLY 72 16.299 7.531 8.294 1.00 0.00 C ATOM 224 O GLY 72 15.482 8.079 7.492 1.00 0.00 O ATOM 225 N SER 73 17.305 8.200 8.912 1.00 0.00 N ATOM 226 CA SER 73 17.635 9.625 8.656 1.00 0.00 C ATOM 227 C SER 73 18.121 9.750 7.233 1.00 0.00 C ATOM 228 O SER 73 18.786 8.821 6.773 1.00 0.00 O ATOM 229 N TYR 74 17.812 10.879 6.544 1.00 0.00 N ATOM 230 CA TYR 74 18.343 11.186 5.162 1.00 0.00 C ATOM 231 C TYR 74 19.152 12.481 5.177 1.00 0.00 C ATOM 232 O TYR 74 18.822 13.438 5.917 1.00 0.00 O ATOM 233 N ALA 75 20.212 12.523 4.357 1.00 0.00 N ATOM 234 CA ALA 75 20.955 13.769 4.232 1.00 0.00 C ATOM 235 C ALA 75 21.298 14.172 2.818 1.00 0.00 C ATOM 236 O ALA 75 21.643 13.357 1.954 1.00 0.00 O ATOM 237 N ASP 76 21.171 15.456 2.572 1.00 0.00 N ATOM 238 CA ASP 76 21.378 15.916 1.220 1.00 0.00 C ATOM 239 C ASP 76 21.233 17.398 1.087 1.00 0.00 C ATOM 240 O ASP 76 20.850 18.106 2.024 1.00 0.00 O ATOM 241 N ASP 77 21.583 17.854 -0.099 1.00 0.00 N ATOM 242 CA ASP 77 21.365 19.241 -0.528 1.00 0.00 C ATOM 243 C ASP 77 20.097 19.321 -1.351 1.00 0.00 C ATOM 244 O ASP 77 19.668 18.347 -1.977 1.00 0.00 O ATOM 245 N ARG 78 19.516 20.502 -1.324 1.00 0.00 N ATOM 246 CA ARG 78 18.347 20.808 -2.117 1.00 0.00 C ATOM 247 C ARG 78 18.520 22.145 -2.789 1.00 0.00 C ATOM 248 O ARG 78 18.851 23.149 -2.154 1.00 0.00 O ATOM 249 N ILE 79 18.310 22.152 -4.089 1.00 0.00 N ATOM 250 CA ILE 79 18.172 23.403 -4.769 1.00 0.00 C ATOM 251 C ILE 79 16.665 23.685 -4.831 1.00 0.00 C ATOM 252 O ILE 79 15.892 22.924 -5.456 1.00 0.00 O ATOM 253 N MET 80 16.254 24.764 -4.158 1.00 0.00 N ATOM 254 CA MET 80 14.819 25.084 -4.044 1.00 0.00 C ATOM 255 C MET 80 14.439 26.395 -4.752 1.00 0.00 C ATOM 256 O MET 80 15.315 27.152 -5.090 1.00 0.00 O ATOM 257 N LYS 81 13.140 26.642 -4.934 1.00 0.00 N ATOM 258 CA LYS 81 12.574 27.825 -5.635 1.00 0.00 C ATOM 259 C LYS 81 11.893 28.756 -4.636 1.00 0.00 C ATOM 260 O LYS 81 10.995 28.320 -3.894 1.00 0.00 O ATOM 261 N ARG 82 12.301 30.037 -4.640 1.00 0.00 N ATOM 262 CA ARG 82 11.862 31.067 -3.667 1.00 0.00 C ATOM 263 C ARG 82 10.436 31.709 -3.721 1.00 0.00 C ATOM 264 O ARG 82 9.971 32.239 -2.691 1.00 0.00 O ATOM 265 N ALA 83 9.737 31.647 -4.857 1.00 0.00 N ATOM 266 CA ALA 83 8.371 32.274 -5.055 1.00 0.00 C ATOM 267 C ALA 83 8.395 33.235 -6.216 1.00 0.00 C ATOM 268 O ALA 83 7.572 33.143 -7.146 1.00 0.00 O ATOM 269 N GLY 84 9.330 34.185 -6.112 1.00 0.00 N ATOM 270 CA GLY 84 9.668 35.086 -7.190 1.00 0.00 C ATOM 271 C GLY 84 10.471 34.299 -8.229 1.00 0.00 C ATOM 272 O GLY 84 11.112 34.872 -9.144 1.00 0.00 O ATOM 273 N GLY 85 10.416 32.977 -8.065 1.00 0.00 N ATOM 274 CA GLY 85 11.016 32.007 -8.984 1.00 0.00 C ATOM 275 C GLY 85 12.514 31.819 -8.892 1.00 0.00 C ATOM 276 O GLY 85 13.063 30.994 -9.627 1.00 0.00 O ATOM 277 N GLU 86 13.183 32.577 -8.014 1.00 0.00 N ATOM 278 CA GLU 86 14.659 32.486 -7.876 1.00 0.00 C ATOM 279 C GLU 86 15.128 31.252 -7.074 1.00 0.00 C ATOM 280 O GLU 86 14.373 30.693 -6.239 1.00 0.00 O ATOM 281 N LEU 87 16.380 30.839 -7.292 1.00 0.00 N ATOM 282 CA LEU 87 16.865 29.599 -6.668 1.00 0.00 C ATOM 283 C LEU 87 17.733 29.772 -5.396 1.00 0.00 C ATOM 284 O LEU 87 18.553 30.688 -5.299 1.00 0.00 O ATOM 285 N PHE 88 17.496 28.925 -4.396 1.00 0.00 N ATOM 286 CA PHE 88 18.409 28.824 -3.276 1.00 0.00 C ATOM 287 C PHE 88 18.842 27.409 -2.990 1.00 0.00 C ATOM 288 O PHE 88 18.353 26.439 -3.603 1.00 0.00 O ATOM 289 N TRP 89 19.796 27.295 -2.066 1.00 0.00 N ATOM 290 CA TRP 89 20.343 26.003 -1.724 1.00 0.00 C ATOM 291 C TRP 89 20.267 25.753 -0.261 1.00 0.00 C ATOM 292 O TRP 89 20.365 26.637 0.569 1.00 0.00 O ATOM 293 N CYS 90 20.081 24.499 0.066 1.00 0.00 N ATOM 294 CA CYS 90 19.911 24.172 1.435 1.00 0.00 C ATOM 295 C CYS 90 20.654 22.833 1.596 1.00 0.00 C ATOM 296 O CYS 90 20.850 22.105 0.612 1.00 0.00 O ATOM 297 N HIS 91 21.103 22.553 2.818 1.00 0.00 N ATOM 298 CA HIS 91 21.819 21.317 3.153 1.00 0.00 C ATOM 299 C HIS 91 20.953 20.730 4.274 1.00 0.00 C ATOM 300 O HIS 91 20.745 21.391 5.301 1.00 0.00 O ATOM 301 N VAL 92 20.400 19.536 4.058 1.00 0.00 N ATOM 302 CA VAL 92 19.268 19.048 4.855 1.00 0.00 C ATOM 303 C VAL 92 19.596 17.769 5.511 1.00 0.00 C ATOM 304 O VAL 92 20.320 16.945 4.984 1.00 0.00 O ATOM 305 N THR 93 18.988 17.579 6.651 1.00 0.00 N ATOM 306 CA THR 93 18.870 16.259 7.262 1.00 0.00 C ATOM 307 C THR 93 17.369 16.132 7.512 1.00 0.00 C ATOM 308 O THR 93 16.688 17.065 8.102 1.00 0.00 O ATOM 309 N GLY 94 16.836 15.038 7.002 1.00 0.00 N ATOM 310 CA GLY 94 15.413 14.677 7.271 1.00 0.00 C ATOM 311 C GLY 94 15.320 13.415 8.104 1.00 0.00 C ATOM 312 O GLY 94 15.882 12.343 7.768 1.00 0.00 O ATOM 313 N ARG 95 14.579 13.577 9.178 1.00 0.00 N ATOM 314 CA ARG 95 14.471 12.600 10.249 1.00 0.00 C ATOM 315 C ARG 95 13.018 12.196 10.415 1.00 0.00 C ATOM 316 O ARG 95 12.137 13.053 10.522 1.00 0.00 O ATOM 317 N ALA 96 12.762 10.906 10.513 1.00 0.00 N ATOM 318 CA ALA 96 11.396 10.522 10.840 1.00 0.00 C ATOM 319 C ALA 96 11.060 10.558 12.333 1.00 0.00 C ATOM 320 O ALA 96 11.870 10.255 13.153 1.00 0.00 O ATOM 321 N LEU 97 9.834 10.915 12.661 1.00 0.00 N ATOM 322 CA LEU 97 9.270 10.701 13.976 1.00 0.00 C ATOM 323 C LEU 97 8.285 9.499 13.948 1.00 0.00 C ATOM 324 O LEU 97 7.428 9.451 13.079 1.00 0.00 O ATOM 325 N ASP 98 5.654 6.165 15.808 1.00 0.00 N ATOM 326 CA ASP 98 4.669 5.635 16.840 1.00 0.00 C ATOM 327 C ASP 98 5.393 5.080 18.095 1.00 0.00 C ATOM 328 O ASP 98 6.552 5.426 18.212 1.00 0.00 O ATOM 329 N ARG 99 4.914 4.217 19.031 1.00 0.00 N ATOM 330 CA ARG 99 4.051 3.038 18.935 1.00 0.00 C ATOM 331 C ARG 99 4.537 2.346 17.673 1.00 0.00 C ATOM 332 O ARG 99 5.619 2.740 17.117 1.00 0.00 O ATOM 333 N THR 100 3.816 1.330 17.239 1.00 0.00 N ATOM 334 CA THR 100 4.291 0.478 16.147 1.00 0.00 C ATOM 335 C THR 100 5.457 1.188 15.467 1.00 0.00 C ATOM 336 O THR 100 5.225 2.257 14.867 1.00 0.00 O ATOM 337 N ALA 101 6.698 0.720 15.560 1.00 0.00 N ATOM 338 CA ALA 101 7.807 1.640 15.141 1.00 0.00 C ATOM 339 C ALA 101 7.721 2.287 13.742 1.00 0.00 C ATOM 340 O ALA 101 8.664 2.217 12.964 1.00 0.00 O ATOM 341 N PRO 102 6.614 2.946 13.436 1.00 0.00 N ATOM 342 CA PRO 102 6.311 3.410 12.100 1.00 0.00 C ATOM 343 C PRO 102 6.424 4.923 12.026 1.00 0.00 C ATOM 344 O PRO 102 5.802 5.624 12.841 1.00 0.00 O ATOM 345 N LEU 103 7.180 5.441 11.032 1.00 0.00 N ATOM 346 CA LEU 103 7.190 6.890 10.779 1.00 0.00 C ATOM 347 C LEU 103 5.775 7.447 10.665 1.00 0.00 C ATOM 348 O LEU 103 4.890 6.845 10.021 1.00 0.00 O ATOM 349 N ALA 104 5.607 8.597 11.300 1.00 0.00 N ATOM 350 CA ALA 104 4.358 9.263 11.460 1.00 0.00 C ATOM 351 C ALA 104 4.472 10.761 11.037 1.00 0.00 C ATOM 352 O ALA 104 3.515 11.306 10.444 1.00 0.00 O ATOM 353 N ALA 105 5.627 11.411 11.318 1.00 0.00 N ATOM 354 CA ALA 105 5.939 12.738 10.783 1.00 0.00 C ATOM 355 C ALA 105 7.385 12.805 10.405 1.00 0.00 C ATOM 356 O ALA 105 8.153 11.889 10.665 1.00 0.00 O ATOM 357 N GLY 106 7.755 13.902 9.763 1.00 0.00 N ATOM 358 CA GLY 106 9.086 14.100 9.190 1.00 0.00 C ATOM 359 C GLY 106 9.604 15.442 9.569 1.00 0.00 C ATOM 360 O GLY 106 8.884 16.422 9.405 1.00 0.00 O ATOM 361 N VAL 107 10.825 15.491 10.127 1.00 0.00 N ATOM 362 CA VAL 107 11.413 16.775 10.511 1.00 0.00 C ATOM 363 C VAL 107 12.607 17.012 9.616 1.00 0.00 C ATOM 364 O VAL 107 13.429 16.095 9.354 1.00 0.00 O ATOM 365 N TRP 108 12.628 18.218 9.051 1.00 0.00 N ATOM 366 CA TRP 108 13.709 18.630 8.172 1.00 0.00 C ATOM 367 C TRP 108 14.400 19.852 8.746 1.00 0.00 C ATOM 368 O TRP 108 13.780 20.902 8.936 1.00 0.00 O ATOM 369 N THR 109 15.679 19.634 9.078 1.00 0.00 N ATOM 370 CA THR 109 16.593 20.641 9.621 1.00 0.00 C ATOM 371 C THR 109 17.663 20.852 8.554 1.00 0.00 C ATOM 372 O THR 109 18.339 19.880 8.126 1.00 0.00 O ATOM 373 N PHE 110 17.780 22.117 8.138 1.00 0.00 N ATOM 374 CA PHE 110 18.545 22.553 6.945 1.00 0.00 C ATOM 375 C PHE 110 19.340 23.845 7.176 1.00 0.00 C ATOM 376 O PHE 110 18.778 24.868 7.670 1.00 0.00 O ATOM 377 N GLU 111 20.593 23.903 6.766 1.00 0.00 N ATOM 378 CA GLU 111 21.081 25.284 6.635 1.00 0.00 C ATOM 379 C GLU 111 21.131 25.781 5.193 1.00 0.00 C ATOM 380 O GLU 111 21.443 25.041 4.241 1.00 0.00 O ATOM 381 N ASP 112 20.730 27.034 5.084 1.00 0.00 N ATOM 382 CA ASP 112 20.896 27.833 3.910 1.00 0.00 C ATOM 383 C ASP 112 22.363 27.865 3.470 1.00 0.00 C ATOM 384 O ASP 112 23.238 28.322 4.217 1.00 0.00 O ATOM 385 N LEU 113 22.638 27.334 2.287 1.00 0.00 N ATOM 386 CA LEU 113 24.001 27.331 1.796 1.00 0.00 C ATOM 387 C LEU 113 23.948 28.265 0.597 1.00 0.00 C ATOM 388 O LEU 113 24.610 28.041 -0.426 1.00 0.00 O ATOM 389 N SER 114 23.191 29.360 0.843 1.00 0.00 N ATOM 390 CA SER 114 22.527 30.276 -0.135 1.00 0.00 C ATOM 391 C SER 114 23.064 30.293 -1.535 1.00 0.00 C ATOM 392 O SER 114 22.206 30.075 -2.369 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 392 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 54.06 72.9 192 87.3 220 ARMSMC SECONDARY STRUCTURE . . 39.43 84.6 117 87.3 134 ARMSMC SURFACE . . . . . . . . 57.84 69.2 120 85.7 140 ARMSMC BURIED . . . . . . . . 47.09 79.2 72 90.0 80 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 89 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 83 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 56 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 58 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 69 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 43 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 22 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.16 (Number of atoms: 98) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.16 98 88.3 111 CRMSCA CRN = ALL/NP . . . . . 0.0323 CRMSCA SECONDARY STRUCTURE . . 2.79 59 88.1 67 CRMSCA SURFACE . . . . . . . . 3.52 61 85.9 71 CRMSCA BURIED . . . . . . . . 2.47 37 92.5 40 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.14 392 71.7 547 CRMSMC SECONDARY STRUCTURE . . 2.71 236 71.3 331 CRMSMC SURFACE . . . . . . . . 3.49 244 69.3 352 CRMSMC BURIED . . . . . . . . 2.44 148 75.9 195 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 424 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 378 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 270 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 265 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 159 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.14 392 45.2 868 CRMSALL SECONDARY STRUCTURE . . 2.71 236 43.9 538 CRMSALL SURFACE . . . . . . . . 3.49 244 44.4 549 CRMSALL BURIED . . . . . . . . 2.44 148 46.4 319 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.292 1.000 0.500 98 88.3 111 ERRCA SECONDARY STRUCTURE . . 2.198 1.000 0.500 59 88.1 67 ERRCA SURFACE . . . . . . . . 2.579 1.000 0.500 61 85.9 71 ERRCA BURIED . . . . . . . . 1.818 1.000 0.500 37 92.5 40 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.301 1.000 0.500 392 71.7 547 ERRMC SECONDARY STRUCTURE . . 2.169 1.000 0.500 236 71.3 331 ERRMC SURFACE . . . . . . . . 2.589 1.000 0.500 244 69.3 352 ERRMC BURIED . . . . . . . . 1.825 1.000 0.500 148 75.9 195 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 424 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 378 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 270 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 265 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 159 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.301 1.000 0.500 392 45.2 868 ERRALL SECONDARY STRUCTURE . . 2.169 1.000 0.500 236 43.9 538 ERRALL SURFACE . . . . . . . . 2.589 1.000 0.500 244 44.4 549 ERRALL BURIED . . . . . . . . 1.825 1.000 0.500 148 46.4 319 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 23 70 78 87 97 98 111 DISTCA CA (P) 20.72 63.06 70.27 78.38 87.39 111 DISTCA CA (RMS) 0.69 1.30 1.46 1.91 2.97 DISTCA ALL (N) 89 273 306 347 389 392 868 DISTALL ALL (P) 10.25 31.45 35.25 39.98 44.82 868 DISTALL ALL (RMS) 0.69 1.29 1.46 1.92 3.00 DISTALL END of the results output